Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046100.t1 | XP_013445554.1 | 98.9 | 274 | 3 | 0 | 1 | 274 | 105 | 378 | 7.60E-156 | 559.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046100.t1 | Q38945 | 72.2 | 277 | 61 | 3 | 2 | 274 | 109 | 373 | 2.7e-109 | 396.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046100.t1 | A0A072U199 | 98.9 | 274 | 3 | 0 | 1 | 274 | 105 | 378 | 5.5e-156 | 559.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35178 | MS.gene046100 | PPI |
| MS.gene028282 | MS.gene046100 | PPI |
| MS.gene023190 | MS.gene046100 | PPI |
| MS.gene36509 | MS.gene046100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046100.t1 | MTR_8g464260 | 98.905 | 274 | 3 | 0 | 1 | 274 | 105 | 378 | 0.0 | 564 |
| MS.gene046100.t1 | MTR_2g012510 | 72.527 | 273 | 75 | 0 | 2 | 274 | 194 | 466 | 1.74e-147 | 421 |
| MS.gene046100.t1 | MTR_4g090525 | 61.455 | 275 | 105 | 1 | 1 | 274 | 176 | 450 | 1.19e-116 | 342 |
| MS.gene046100.t1 | MTR_4g094672 | 44.292 | 219 | 97 | 5 | 11 | 229 | 53 | 246 | 3.15e-55 | 179 |
| MS.gene046100.t1 | MTR_2g011680 | 30.035 | 283 | 148 | 12 | 10 | 265 | 146 | 405 | 1.28e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046100.t1 | AT5G54390 | 72.202 | 277 | 61 | 3 | 2 | 274 | 109 | 373 | 1.23e-139 | 398 |
| MS.gene046100.t1 | AT5G63980 | 46.245 | 253 | 110 | 5 | 10 | 262 | 107 | 333 | 5.02e-71 | 223 |
| MS.gene046100.t1 | AT5G09290 | 42.264 | 265 | 119 | 6 | 10 | 274 | 107 | 337 | 1.20e-62 | 201 |
| MS.gene046100.t1 | AT5G63990 | 40.824 | 267 | 129 | 7 | 2 | 268 | 103 | 340 | 9.84e-60 | 194 |
| MS.gene046100.t1 | AT5G64000 | 42.424 | 264 | 126 | 7 | 11 | 274 | 65 | 302 | 2.15e-56 | 183 |
| MS.gene046100.t1 | AT5G64000 | 42.424 | 264 | 126 | 7 | 11 | 274 | 108 | 345 | 3.66e-56 | 184 |
| MS.gene046100.t1 | AT5G63990 | 38.073 | 218 | 108 | 5 | 2 | 219 | 103 | 293 | 6.06e-45 | 154 |
| MS.gene046100.t1 | AT4G05090 | 28.986 | 276 | 158 | 9 | 8 | 268 | 109 | 361 | 2.45e-21 | 92.4 |
| MS.gene046100.t1 | AT4G05090 | 28.986 | 276 | 158 | 9 | 8 | 268 | 141 | 393 | 4.13e-21 | 92.0 |
Find 91 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGACTTCACTGGGTAAT+TGG | 0.114406 | 8.4:-45733193 | None:intergenic |
| TTCAAAGGGAACGTACTTAG+AGG | 0.300891 | 8.4:+45734337 | MS.gene046100:CDS |
| AAAGTTGTTCTTGGAGTTCT+TGG | 0.314451 | 8.4:+45733165 | MS.gene046100:CDS |
| GAGGATGGAAAAGTTGTTCT+TGG | 0.316763 | 8.4:+45733156 | MS.gene046100:CDS |
| CGAATAGGCCTAGCACAATT+TGG | 0.328303 | 8.4:-45733372 | None:intergenic |
| AATCCCAATGTGCCGTCAAC+AGG | 0.339938 | 8.4:-45733093 | None:intergenic |
| TTGATGCTGTTTATGCTAGC+TGG | 0.345159 | 8.4:+45734414 | MS.gene046100:CDS |
| GACCCTGTTGACGGCACATT+GGG | 0.370234 | 8.4:+45733090 | MS.gene046100:CDS |
| TTCATGAAATTTGCAAAGTC+AGG | 0.372813 | 8.4:+45734218 | MS.gene046100:CDS |
| ATTGGCCGCTGCAGCTCAAC+GGG | 0.373644 | 8.4:+45733039 | MS.gene046100:CDS |
| TTTGAGTTTGCCCTTTCTAC+TGG | 0.375537 | 8.4:-45733438 | None:intergenic |
| CAGGTTACAAAGAAAAGATA+TGG | 0.389849 | 8.4:+45734237 | MS.gene046100:CDS |
| CATTCTAATGTCCTATCTTC+AGG | 0.398532 | 8.4:-45733348 | None:intergenic |
| TCTGACTTCACTGGGTAATT+GGG | 0.398839 | 8.4:-45733192 | None:intergenic |
| ATATCGTTGTTTGATGATAC+TGG | 0.400328 | 8.4:-45733233 | None:intergenic |
| ACTCTTGATGCATGCGGAAA+AGG | 0.410703 | 8.4:+45733270 | MS.gene046100:CDS |
| TGCAAATTTCATGAATATCT+CGG | 0.414493 | 8.4:-45734210 | None:intergenic |
| AGTTTCTTCTGTTGATGATC+CGG | 0.429160 | 8.4:+45733395 | MS.gene046100:CDS |
| CAAGAGTTATGTCTGGACTT+TGG | 0.431295 | 8.4:-45732993 | None:intergenic |
| ACGGCACATTGGGATTTGTA+CGG | 0.436123 | 8.4:+45733100 | MS.gene046100:CDS |
| TTTAGCCATTCTGACTTCAC+TGG | 0.439440 | 8.4:-45733201 | None:intergenic |
| GCCCTTACGTGTCCACAGTA+TGG | 0.443252 | 8.4:+45734157 | MS.gene046100:CDS |
| TTCTGTTGATGATCCGGCAT+TGG | 0.445837 | 8.4:+45733401 | MS.gene046100:CDS |
| AAGTTGTTCTTGGAGTTCTT+GGG | 0.448569 | 8.4:+45733166 | MS.gene046100:CDS |
| CGTTGAGCTGCAGCGGCCAA+TGG | 0.448822 | 8.4:-45733037 | None:intergenic |
| AGGTGCTAGTGGAAGGCATT+GGG | 0.449905 | 8.4:+45733062 | MS.gene046100:CDS |
| GATGTTCCAAGAGTTATGTC+TGG | 0.451980 | 8.4:-45733000 | None:intergenic |
| CGGCACATTGGGATTTGTAC+GGG | 0.465953 | 8.4:+45733101 | MS.gene046100:CDS |
| TGGGACTCCTCAAATTTATG+AGG | 0.466477 | 8.4:+45734434 | MS.gene046100:CDS |
| CAAAGTCCAGACATAACTCT+TGG | 0.467323 | 8.4:+45732994 | MS.gene046100:CDS |
| CATTGGCCGCTGCAGCTCAA+CGG | 0.472445 | 8.4:+45733038 | MS.gene046100:CDS |
| TGGGTACTTGACCCTGTTGA+CGG | 0.474366 | 8.4:+45733081 | MS.gene046100:CDS |
| GGTGGTGTGGTAACCGATGC+CGG | 0.477095 | 8.4:+45734296 | MS.gene046100:CDS |
| CTCTATGCGAACCAGTAGAA+AGG | 0.478562 | 8.4:+45733427 | MS.gene046100:CDS |
| AGTCGTTGATTCCTGAAGAT+AGG | 0.478934 | 8.4:+45733337 | MS.gene046100:CDS |
| TAGAGGTCGGCCTCCGGCAT+CGG | 0.486133 | 8.4:-45734309 | None:intergenic |
| TCAACAGAAGAAACTCGAAT+AGG | 0.492310 | 8.4:-45733387 | None:intergenic |
| TGATGCTGTTTATGCTAGCT+GGG | 0.492410 | 8.4:+45734415 | MS.gene046100:CDS |
| TCAGAAGTTCTCGCGGCCAT+TGG | 0.498717 | 8.4:+45733021 | MS.gene046100:CDS |
| TACCATACTGTGGACACGTA+AGG | 0.499750 | 8.4:-45734159 | None:intergenic |
| GTGAGCAAGGCCAGCTGTGA+AGG | 0.502989 | 8.4:-45733466 | None:intergenic |
| GAGGTGCTAGTGGAAGGCAT+TGG | 0.506229 | 8.4:+45733061 | MS.gene046100:CDS |
| GCTCTAGCTTTGATTGAGGA+TGG | 0.519160 | 8.4:+45733141 | MS.gene046100:CDS |
| CAAGGCCAGCTGTGAAGGAA+TGG | 0.524890 | 8.4:-45733461 | None:intergenic |
| TCAAACCATTCCTTCACAGC+TGG | 0.535193 | 8.4:+45733456 | MS.gene046100:CDS |
| GGCCGCTGCAGCTCAACGGG+AGG | 0.542625 | 8.4:+45733042 | MS.gene046100:CDS |
| AAAGTCTAGAGGTCGGCCTC+CGG | 0.545768 | 8.4:-45734315 | None:intergenic |
| CGAGGCATAATTGCATGCTC+TGG | 0.546827 | 8.4:+45734368 | MS.gene046100:CDS |
| TCAAAGGGAACGTACTTAGA+GGG | 0.547056 | 8.4:+45734338 | MS.gene046100:CDS |
| TGACCCTGTTGACGGCACAT+TGG | 0.552603 | 8.4:+45733089 | MS.gene046100:CDS |
| TCGCATAGAGTTGCCAATGC+CGG | 0.553182 | 8.4:-45733414 | None:intergenic |
| TCTATGCGAACCAGTAGAAA+GGG | 0.553675 | 8.4:+45733428 | MS.gene046100:CDS |
| CACCTCCCGTTGAGCTGCAG+CGG | 0.555384 | 8.4:-45733044 | None:intergenic |
| TTGCTCACAGTGTAGGACTA+AGG | 0.556338 | 8.4:+45733481 | MS.gene046100:CDS |
| CGGTGTTGTGATTGTTGAAG+AGG | 0.559759 | 8.4:+45734271 | MS.gene046100:CDS |
| AGCTCAACGGGAGGTGCTAG+TGG | 0.561690 | 8.4:+45733051 | MS.gene046100:CDS |
| CAACGGGAGGTGCTAGTGGA+AGG | 0.562576 | 8.4:+45733055 | MS.gene046100:CDS |
| TTAGCCATTCTGACTTCACT+GGG | 0.565040 | 8.4:-45733200 | None:intergenic |
| AGGTTACAAAGAAAAGATAT+GGG | 0.567323 | 8.4:+45734238 | MS.gene046100:CDS |
| TAAAGTATGCAGCAATAGCA+AGG | 0.571197 | 8.4:+45734180 | MS.gene046100:CDS |
| TAGAATGGCCAAATTGTGCT+AGG | 0.579511 | 8.4:+45733364 | MS.gene046100:CDS |
| ATTACCCAGTGAAGTCAGAA+TGG | 0.582785 | 8.4:+45733196 | MS.gene046100:CDS |
| CTGAAGATAGGACATTAGAA+TGG | 0.584862 | 8.4:+45733349 | MS.gene046100:CDS |
| TGGACTTTGGAGACCATACA+TGG | 0.586518 | 8.4:-45732980 | None:intergenic |
| AAGATATGGGATCATGCTGC+CGG | 0.592595 | 8.4:+45734251 | MS.gene046100:CDS |
| AAAGTATGCAGCAATAGCAA+GGG | 0.593183 | 8.4:+45734181 | MS.gene046100:CDS |
| GCTGGCCTTGCTCACAGTGT+AGG | 0.593474 | 8.4:+45733474 | MS.gene046100:CDS |
| GGTTGCTCTAGCTTTGATTG+AGG | 0.597081 | 8.4:+45733137 | MS.gene046100:CDS |
| ACCATACTGTGGACACGTAA+GGG | 0.598695 | 8.4:-45734158 | None:intergenic |
| CTGCATACTTTACCATACTG+TGG | 0.600089 | 8.4:-45734169 | None:intergenic |
| TTAGTCCTACACTGTGAGCA+AGG | 0.600437 | 8.4:-45733479 | None:intergenic |
| GTTGTGATTGTTGAAGAGGC+CGG | 0.603344 | 8.4:+45734275 | MS.gene046100:CDS |
| CAGAGCATGCAATTATGCCT+CGG | 0.606208 | 8.4:-45734367 | None:intergenic |
| TGTACGGGGCGATCAGTATG+CGG | 0.612887 | 8.4:+45733116 | MS.gene046100:CDS |
| CTCTTCAACAATCACAACAC+CGG | 0.618190 | 8.4:-45734270 | None:intergenic |
| TTGTATGCAAAGAGAGGCAG+TGG | 0.622560 | 8.4:+45733300 | MS.gene046100:CDS |
| GGCACATTGGGATTTGTACG+GGG | 0.624183 | 8.4:+45733102 | MS.gene046100:CDS |
| ATCCCAATGTGCCGTCAACA+GGG | 0.626643 | 8.4:-45733092 | None:intergenic |
| AGAGAGGCAGTGGTGAGGCG+TGG | 0.628860 | 8.4:+45733310 | MS.gene046100:CDS |
| TGTTGAAGAGGCCGGTGGTG+TGG | 0.638056 | 8.4:+45734283 | MS.gene046100:CDS |
| CCTTTGAAAAGTCTAGAGGT+CGG | 0.639579 | 8.4:-45734322 | None:intergenic |
| GGCATCGGTTACCACACCAC+CGG | 0.647173 | 8.4:-45734294 | None:intergenic |
| GTTCCCTTTGAAAAGTCTAG+AGG | 0.652497 | 8.4:-45734326 | None:intergenic |
| TGCAAAGAGAGGCAGTGGTG+AGG | 0.660835 | 8.4:+45733305 | MS.gene046100:CDS |
| TCAACAACTCTTGATGCATG+CGG | 0.662013 | 8.4:+45733264 | MS.gene046100:CDS |
| TGGAACATCAGAAGTTCTCG+CGG | 0.662297 | 8.4:+45733014 | MS.gene046100:CDS |
| TACTTAGAGGGTCTTGACCG+AGG | 0.675960 | 8.4:+45734350 | MS.gene046100:CDS |
| AAGTATGCAGCAATAGCAAG+GGG | 0.677278 | 8.4:+45734182 | MS.gene046100:CDS |
| GTGATTGTTGAAGAGGCCGG+TGG | 0.685575 | 8.4:+45734278 | MS.gene046100:CDS |
| GGTGTGGTAACCGATGCCGG+AGG | 0.697260 | 8.4:+45734299 | MS.gene046100:CDS |
| TGTGTGTTGTATGCAAAGAG+AGG | 0.730469 | 8.4:+45733294 | MS.gene046100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATAATATAATTCC+AGG | + | chr8.4:45733834-45733853 | MS.gene046100:intron | 10.0% |
| !! | CTAAAAAAAAAAAAAAAAAC+TGG | + | chr8.4:45733896-45733915 | MS.gene046100:intron | 10.0% |
| !!! | CAGTTTTTTTTTTTTTTTTT+AGG | - | chr8.4:45733898-45733917 | None:intergenic | 10.0% |
| !!! | AATAAACTTAGATTATGTTT+TGG | - | chr8.4:45734044-45734063 | None:intergenic | 15.0% |
| !!! | TATGTATAATTTTAGTTGTA+CGG | - | chr8.4:45733815-45733834 | None:intergenic | 15.0% |
| !! | TTAATTATTGTACTTTCGAT+AGG | + | chr8.4:45733860-45733879 | MS.gene046100:intron | 20.0% |
| ! | AAGTACAATAATTAAATGCC+TGG | - | chr8.4:45733855-45733874 | None:intergenic | 25.0% |
| ! | AATTTCAGAGAATACAGATT+AGG | - | chr8.4:45734003-45734022 | None:intergenic | 25.0% |
| ! | AGGTTACAAAGAAAAGATAT+GGG | + | chr8.4:45734238-45734257 | MS.gene046100:CDS | 25.0% |
| ! | TGCAAATTTCATGAATATCT+CGG | - | chr8.4:45734213-45734232 | None:intergenic | 25.0% |
| ! | TTTGGAAGATATTGTAAACA+AGG | - | chr8.4:45734026-45734045 | None:intergenic | 25.0% |
| AGCTTATGCATATCAATAAG+TGG | - | chr8.4:45733665-45733684 | None:intergenic | 30.0% | |
| CAGGTTACAAAGAAAAGATA+TGG | + | chr8.4:45734237-45734256 | MS.gene046100:CDS | 30.0% | |
| TACTTTCGATAGGAACAATA+TGG | + | chr8.4:45733870-45733889 | MS.gene046100:intron | 30.0% | |
| TTCATGAAATTTGCAAAGTC+AGG | + | chr8.4:45734218-45734237 | MS.gene046100:CDS | 30.0% | |
| ! | AATTCCAACAATGGTGTTAA+AGG | - | chr8.4:45734099-45734118 | None:intergenic | 30.0% |
| ! | ATATCGTTGTTTGATGATAC+TGG | - | chr8.4:45733236-45733255 | None:intergenic | 30.0% |
| !! | AGTGTCTTGTTTGAAGATTA+AGG | + | chr8.4:45733622-45733641 | MS.gene046100:intron | 30.0% |
| AAAGATAGGAATCATAGACC+AGG | + | chr8.4:45733955-45733974 | MS.gene046100:intron | 35.0% | |
| AAAGTATGCAGCAATAGCAA+GGG | + | chr8.4:45734181-45734200 | MS.gene046100:CDS | 35.0% | |
| AAAGTTGTTCTTGGAGTTCT+TGG | + | chr8.4:45733165-45733184 | MS.gene046100:CDS | 35.0% | |
| AAGTTGTTCTTGGAGTTCTT+GGG | + | chr8.4:45733166-45733185 | MS.gene046100:CDS | 35.0% | |
| CATAGGAAGCTATGAAAGAT+AGG | + | chr8.4:45733941-45733960 | MS.gene046100:intron | 35.0% | |
| CATTCTAATGTCCTATCTTC+AGG | - | chr8.4:45733351-45733370 | None:intergenic | 35.0% | |
| CTGAAGATAGGACATTAGAA+TGG | + | chr8.4:45733349-45733368 | MS.gene046100:CDS | 35.0% | |
| CTTTCATATCTACTGGACAT+AGG | + | chr8.4:45733924-45733943 | MS.gene046100:intron | 35.0% | |
| GAGCATTTCAATTCCAACAA+TGG | - | chr8.4:45734108-45734127 | None:intergenic | 35.0% | |
| GATTAGGAACTCAAAACAGA+AGG | - | chr8.4:45733987-45734006 | None:intergenic | 35.0% | |
| TAAAGTATGCAGCAATAGCA+AGG | + | chr8.4:45734180-45734199 | MS.gene046100:CDS | 35.0% | |
| TACAGTTGCAGAACAATTGA+CGG | - | chr8.4:45733530-45733549 | None:intergenic | 35.0% | |
| TCAACAGAAGAAACTCGAAT+AGG | - | chr8.4:45733390-45733409 | None:intergenic | 35.0% | |
| TCTTCCTTTAACACCATTGT+TGG | + | chr8.4:45734092-45734111 | MS.gene046100:intron | 35.0% | |
| !! | AGTTTCTTCTGTTGATGATC+CGG | + | chr8.4:45733395-45733414 | MS.gene046100:CDS | 35.0% |
| AAGACCCGAGGTAACAAATA+GGG | + | chr8.4:45733788-45733807 | MS.gene046100:intron | 40.0% | |
| AAGTATGCAGCAATAGCAAG+GGG | + | chr8.4:45734182-45734201 | MS.gene046100:CDS | 40.0% | |
| ACAGTTGCAGAACAATTGAC+GGG | - | chr8.4:45733529-45733548 | None:intergenic | 40.0% | |
| AGGAACTCAAAACAGAAGGA+AGG | - | chr8.4:45733983-45734002 | None:intergenic | 40.0% | |
| ATTACCCAGTGAAGTCAGAA+TGG | + | chr8.4:45733196-45733215 | MS.gene046100:CDS | 40.0% | |
| CAAAGTCCAGACATAACTCT+TGG | + | chr8.4:45732994-45733013 | MS.gene046100:CDS | 40.0% | |
| CAAGAGTTATGTCTGGACTT+TGG | - | chr8.4:45732996-45733015 | None:intergenic | 40.0% | |
| CTCTTCAACAATCACAACAC+CGG | - | chr8.4:45734273-45734292 | None:intergenic | 40.0% | |
| CTGCATACTTTACCATACTG+TGG | - | chr8.4:45734172-45734191 | None:intergenic | 40.0% | |
| GAGGATGGAAAAGTTGTTCT+TGG | + | chr8.4:45733156-45733175 | MS.gene046100:CDS | 40.0% | |
| GATGTTCCAAGAGTTATGTC+TGG | - | chr8.4:45733003-45733022 | None:intergenic | 40.0% | |
| TAGAATGGCCAAATTGTGCT+AGG | + | chr8.4:45733364-45733383 | MS.gene046100:CDS | 40.0% | |
| TCAAAGGGAACGTACTTAGA+GGG | + | chr8.4:45734338-45734357 | MS.gene046100:CDS | 40.0% | |
| TCAACAACTCTTGATGCATG+CGG | + | chr8.4:45733264-45733283 | MS.gene046100:CDS | 40.0% | |
| TCTATGCGAACCAGTAGAAA+GGG | + | chr8.4:45733428-45733447 | MS.gene046100:CDS | 40.0% | |
| TCTGACTTCACTGGGTAATT+GGG | - | chr8.4:45733195-45733214 | None:intergenic | 40.0% | |
| TGCTCTACACTCTCAAAATC+TGG | + | chr8.4:45734123-45734142 | MS.gene046100:intron | 40.0% | |
| TGTGTGTTGTATGCAAAGAG+AGG | + | chr8.4:45733294-45733313 | MS.gene046100:CDS | 40.0% | |
| TTAGCCATTCTGACTTCACT+GGG | - | chr8.4:45733203-45733222 | None:intergenic | 40.0% | |
| TTCAAAGGGAACGTACTTAG+AGG | + | chr8.4:45734337-45734356 | MS.gene046100:CDS | 40.0% | |
| TTCTGACTTCACTGGGTAAT+TGG | - | chr8.4:45733196-45733215 | None:intergenic | 40.0% | |
| TTTAGCCATTCTGACTTCAC+TGG | - | chr8.4:45733204-45733223 | None:intergenic | 40.0% | |
| ! | CCTTTGAAAAGTCTAGAGGT+CGG | - | chr8.4:45734325-45734344 | None:intergenic | 40.0% |
| ! | CGACCTCTAGACTTTTCAAA+GGG | + | chr8.4:45734323-45734342 | MS.gene046100:CDS | 40.0% |
| ! | GTTCCCTTTGAAAAGTCTAG+AGG | - | chr8.4:45734329-45734348 | None:intergenic | 40.0% |
| ! | TGATGCTGTTTATGCTAGCT+GGG | + | chr8.4:45734415-45734434 | MS.gene046100:CDS | 40.0% |
| ! | TTGATGCTGTTTATGCTAGC+TGG | + | chr8.4:45734414-45734433 | MS.gene046100:CDS | 40.0% |
| ! | TTTGAGTTTGCCCTTTCTAC+TGG | - | chr8.4:45733441-45733460 | None:intergenic | 40.0% |
| !! | AGTCGTTGATTCCTGAAGAT+AGG | + | chr8.4:45733337-45733356 | MS.gene046100:CDS | 40.0% |
| AAGATATGGGATCATGCTGC+CGG | + | chr8.4:45734251-45734270 | MS.gene046100:CDS | 45.0% | |
| ACCATACTGTGGACACGTAA+GGG | - | chr8.4:45734161-45734180 | None:intergenic | 45.0% | |
| ACGGCACATTGGGATTTGTA+CGG | + | chr8.4:45733100-45733119 | MS.gene046100:CDS | 45.0% | |
| ACTCTTGATGCATGCGGAAA+AGG | + | chr8.4:45733270-45733289 | MS.gene046100:CDS | 45.0% | |
| CAAGACCCGAGGTAACAAAT+AGG | + | chr8.4:45733787-45733806 | MS.gene046100:intron | 45.0% | |
| CAGAGCATGCAATTATGCCT+CGG | - | chr8.4:45734370-45734389 | None:intergenic | 45.0% | |
| CGAATAGGCCTAGCACAATT+TGG | - | chr8.4:45733375-45733394 | None:intergenic | 45.0% | |
| CTCTATGCGAACCAGTAGAA+AGG | + | chr8.4:45733427-45733446 | MS.gene046100:CDS | 45.0% | |
| GGGACGACTTTCATATCTAC+TGG | + | chr8.4:45733917-45733936 | MS.gene046100:intron | 45.0% | |
| GTTGTGATTGTTGAAGAGGC+CGG | + | chr8.4:45734275-45734294 | MS.gene046100:CDS | 45.0% | |
| TACCATACTGTGGACACGTA+AGG | - | chr8.4:45734162-45734181 | None:intergenic | 45.0% | |
| TCAAACCATTCCTTCACAGC+TGG | + | chr8.4:45733456-45733475 | MS.gene046100:CDS | 45.0% | |
| TGGAACATCAGAAGTTCTCG+CGG | + | chr8.4:45733014-45733033 | MS.gene046100:CDS | 45.0% | |
| TTAGTCCTACACTGTGAGCA+AGG | - | chr8.4:45733482-45733501 | None:intergenic | 45.0% | |
| TTGCTCACAGTGTAGGACTA+AGG | + | chr8.4:45733481-45733500 | MS.gene046100:CDS | 45.0% | |
| TTGTATGCAAAGAGAGGCAG+TGG | + | chr8.4:45733300-45733319 | MS.gene046100:CDS | 45.0% | |
| ! | ACGGACCCTATTTGTTACCT+CGG | - | chr8.4:45733796-45733815 | None:intergenic | 45.0% |
| ! | CCGACCTCTAGACTTTTCAA+AGG | + | chr8.4:45734322-45734341 | MS.gene046100:CDS | 45.0% |
| !! | CGGTGTTGTGATTGTTGAAG+AGG | + | chr8.4:45734271-45734290 | MS.gene046100:CDS | 45.0% |
| !! | GCTCTAGCTTTGATTGAGGA+TGG | + | chr8.4:45733141-45733160 | MS.gene046100:CDS | 45.0% |
| !! | GGTTGCTCTAGCTTTGATTG+AGG | + | chr8.4:45733137-45733156 | MS.gene046100:CDS | 45.0% |
| !! | TTCTGTTGATGATCCGGCAT+TGG | + | chr8.4:45733401-45733420 | MS.gene046100:CDS | 45.0% |
| !!! | ACCTCGGGTCTTGTTTTGAT+AGG | - | chr8.4:45733780-45733799 | None:intergenic | 45.0% |
| !! | TAAAAAAAAAAAAAAAAACT+GGG | + | chr8.4:45733897-45733916 | MS.gene046100:intron | 5.0% |
| !!! | AGTTTTTTTTTTTTTTTTTA+GGG | - | chr8.4:45733897-45733916 | None:intergenic | 5.0% |
| AATCCCAATGTGCCGTCAAC+AGG | - | chr8.4:45733096-45733115 | None:intergenic | 50.0% | |
| ATCCCAATGTGCCGTCAACA+GGG | - | chr8.4:45733095-45733114 | None:intergenic | 50.0% | |
| CGAGGCATAATTGCATGCTC+TGG | + | chr8.4:45734368-45734387 | MS.gene046100:CDS | 50.0% | |
| CGGCACATTGGGATTTGTAC+GGG | + | chr8.4:45733101-45733120 | MS.gene046100:CDS | 50.0% | |
| GCCTATCAAAACAAGACCCG+AGG | + | chr8.4:45733776-45733795 | MS.gene046100:intron | 50.0% | |
| GGCACATTGGGATTTGTACG+GGG | + | chr8.4:45733102-45733121 | MS.gene046100:CDS | 50.0% | |
| TACTTAGAGGGTCTTGACCG+AGG | + | chr8.4:45734350-45734369 | MS.gene046100:CDS | 50.0% | |
| TCGCATAGAGTTGCCAATGC+CGG | - | chr8.4:45733417-45733436 | None:intergenic | 50.0% | |
| TGGGTACTTGACCCTGTTGA+CGG | + | chr8.4:45733081-45733100 | MS.gene046100:CDS | 50.0% | |
| ! | CGGACCCTATTTGTTACCTC+GGG | - | chr8.4:45733795-45733814 | None:intergenic | 50.0% |
| !! | AGGTGCTAGTGGAAGGCATT+GGG | + | chr8.4:45733062-45733081 | MS.gene046100:CDS | 50.0% |
| !! | CAAAACAGAAGGAAGGTGCC+TGG | - | chr8.4:45733976-45733995 | None:intergenic | 50.0% |
| AAAGTCTAGAGGTCGGCCTC+CGG | - | chr8.4:45734318-45734337 | None:intergenic | 55.0% | |
| CAAGGCCAGCTGTGAAGGAA+TGG | - | chr8.4:45733464-45733483 | None:intergenic | 55.0% | |
| GACCCTGTTGACGGCACATT+GGG | + | chr8.4:45733090-45733109 | MS.gene046100:CDS | 55.0% | |
| GCCCTTACGTGTCCACAGTA+TGG | + | chr8.4:45734157-45734176 | MS.gene046100:CDS | 55.0% | |
| GTGATTGTTGAAGAGGCCGG+TGG | + | chr8.4:45734278-45734297 | MS.gene046100:CDS | 55.0% | |
| TCAGAAGTTCTCGCGGCCAT+TGG | + | chr8.4:45733021-45733040 | MS.gene046100:CDS | 55.0% | |
| TGACCCTGTTGACGGCACAT+TGG | + | chr8.4:45733089-45733108 | MS.gene046100:CDS | 55.0% | |
| TGCAAAGAGAGGCAGTGGTG+AGG | + | chr8.4:45733305-45733324 | MS.gene046100:CDS | 55.0% | |
| TGTACGGGGCGATCAGTATG+CGG | + | chr8.4:45733116-45733135 | MS.gene046100:CDS | 55.0% | |
| ! | GAGGTGCTAGTGGAAGGCAT+TGG | + | chr8.4:45733061-45733080 | MS.gene046100:CDS | 55.0% |
| ATTGGCCGCTGCAGCTCAAC+GGG | + | chr8.4:45733039-45733058 | MS.gene046100:CDS | 60.0% | |
| CATTGGCCGCTGCAGCTCAA+CGG | + | chr8.4:45733038-45733057 | MS.gene046100:CDS | 60.0% | |
| GGTGGTGTGGTAACCGATGC+CGG | + | chr8.4:45734296-45734315 | MS.gene046100:CDS | 60.0% | |
| GTGAGCAAGGCCAGCTGTGA+AGG | - | chr8.4:45733469-45733488 | None:intergenic | 60.0% | |
| TGTTGAAGAGGCCGGTGGTG+TGG | + | chr8.4:45734283-45734302 | MS.gene046100:CDS | 60.0% | |
| !! | AGCTCAACGGGAGGTGCTAG+TGG | + | chr8.4:45733051-45733070 | MS.gene046100:CDS | 60.0% |
| !! | CAACGGGAGGTGCTAGTGGA+AGG | + | chr8.4:45733055-45733074 | MS.gene046100:CDS | 60.0% |
| !! | GCTGGCCTTGCTCACAGTGT+AGG | + | chr8.4:45733474-45733493 | MS.gene046100:CDS | 60.0% |
| !! | GGCATCGGTTACCACACCAC+CGG | - | chr8.4:45734297-45734316 | None:intergenic | 60.0% |
| AGAGAGGCAGTGGTGAGGCG+TGG | + | chr8.4:45733310-45733329 | MS.gene046100:CDS | 65.0% | |
| CACCTCCCGTTGAGCTGCAG+CGG | - | chr8.4:45733047-45733066 | None:intergenic | 65.0% | |
| CGTTGAGCTGCAGCGGCCAA+TGG | - | chr8.4:45733040-45733059 | None:intergenic | 65.0% | |
| GGTGTGGTAACCGATGCCGG+AGG | + | chr8.4:45734299-45734318 | MS.gene046100:CDS | 65.0% | |
| TAGAGGTCGGCCTCCGGCAT+CGG | - | chr8.4:45734312-45734331 | None:intergenic | 65.0% | |
| GGCCGCTGCAGCTCAACGGG+AGG | + | chr8.4:45733042-45733061 | MS.gene046100:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 45732982 | 45734454 | 45732982 | ID=MS.gene046100 |
| chr8.4 | mRNA | 45732982 | 45734454 | 45732982 | ID=MS.gene046100.t1;Parent=MS.gene046100 |
| chr8.4 | exon | 45732982 | 45733502 | 45732982 | ID=MS.gene046100.t1.exon1;Parent=MS.gene046100.t1 |
| chr8.4 | CDS | 45732982 | 45733502 | 45732982 | ID=cds.MS.gene046100.t1;Parent=MS.gene046100.t1 |
| chr8.4 | exon | 45734151 | 45734454 | 45734151 | ID=MS.gene046100.t1.exon2;Parent=MS.gene046100.t1 |
| chr8.4 | CDS | 45734151 | 45734454 | 45734151 | ID=cds.MS.gene046100.t1;Parent=MS.gene046100.t1 |
| Gene Sequence |
| Protein sequence |
