Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046260.t1 | XP_003598417.1 | 98.3 | 419 | 7 | 0 | 82 | 500 | 82 | 500 | 4.50E-223 | 783.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046260.t1 | Q8L518 | 68.5 | 340 | 107 | 0 | 115 | 454 | 7 | 346 | 9.1e-140 | 498.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046260.t1 | G7IVT5 | 98.3 | 419 | 7 | 0 | 82 | 500 | 82 | 500 | 3.3e-223 | 783.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038844 | MS.gene046260 | PPI |
| MS.gene045848 | MS.gene046260 | PPI |
| MS.gene52160 | MS.gene046260 | PPI |
| MS.gene046260 | MS.gene27633 | PPI |
| MS.gene50958 | MS.gene046260 | PPI |
| MS.gene046260 | MS.gene58299 | PPI |
| MS.gene57514 | MS.gene046260 | PPI |
| MS.gene046260 | MS.gene019492 | PPI |
| MS.gene36871 | MS.gene046260 | PPI |
| MS.gene83346 | MS.gene046260 | PPI |
| MS.gene067354 | MS.gene046260 | PPI |
| MS.gene42220 | MS.gene046260 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046260.t1 | MTR_3g013430 | 98.000 | 500 | 10 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1017 |
| MS.gene046260.t1 | MTR_8g041330 | 72.051 | 390 | 106 | 1 | 113 | 499 | 19 | 408 | 0.0 | 586 |
| MS.gene046260.t1 | MTR_6g039820 | 66.667 | 327 | 108 | 1 | 128 | 453 | 17 | 343 | 2.39e-168 | 479 |
| MS.gene046260.t1 | MTR_1g097850 | 62.534 | 363 | 120 | 3 | 113 | 473 | 2 | 350 | 8.74e-167 | 475 |
| MS.gene046260.t1 | MTR_1g097850 | 64.122 | 262 | 79 | 2 | 113 | 373 | 2 | 249 | 2.06e-119 | 351 |
| MS.gene046260.t1 | MTR_6g040230 | 66.239 | 234 | 77 | 1 | 220 | 453 | 265 | 496 | 3.44e-112 | 341 |
| MS.gene046260.t1 | MTR_2g054370 | 35.312 | 320 | 192 | 5 | 140 | 453 | 56 | 366 | 5.85e-55 | 189 |
| MS.gene046260.t1 | MTR_8g041220 | 74.118 | 85 | 22 | 0 | 356 | 440 | 47 | 131 | 3.63e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046260.t1 | AT1G74320 | 68.529 | 340 | 107 | 0 | 115 | 454 | 7 | 346 | 5.38e-180 | 509 |
| MS.gene046260.t1 | AT4G09760 | 63.030 | 330 | 119 | 3 | 126 | 453 | 14 | 342 | 3.60e-158 | 453 |
| MS.gene046260.t1 | AT4G09760 | 63.030 | 330 | 119 | 3 | 126 | 453 | 14 | 342 | 3.60e-158 | 453 |
| MS.gene046260.t1 | AT1G71697 | 62.310 | 329 | 122 | 2 | 126 | 452 | 16 | 344 | 8.14e-156 | 447 |
| MS.gene046260.t1 | AT4G09760 | 58.294 | 211 | 85 | 3 | 126 | 334 | 14 | 223 | 5.78e-85 | 263 |
| MS.gene046260.t1 | AT4G09760 | 56.633 | 196 | 82 | 3 | 126 | 319 | 14 | 208 | 4.10e-75 | 236 |
| MS.gene046260.t1 | AT2G26830 | 36.254 | 331 | 192 | 6 | 131 | 453 | 45 | 364 | 9.18e-60 | 201 |
Find 114 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACAAGGAAATCTCTATTT+TGG | 0.136724 | 3.4:+9319839 | MS.gene046260:CDS |
| CCACCTGCTTGATTGCTTAT+AGG | 0.171347 | 3.4:-9318664 | None:intergenic |
| CGGTCAGCTTTGCTGCTTAC+AGG | 0.183900 | 3.4:-9318928 | None:intergenic |
| CAGGAAGATGAAGAGAGTTT+TGG | 0.228691 | 3.4:+9322874 | MS.gene046260:CDS |
| ATCATGGAACTCCTTCATTT+TGG | 0.238394 | 3.4:-9319582 | None:intergenic |
| TGATATCATTAGCAGGTAAA+TGG | 0.242873 | 3.4:+9318977 | MS.gene046260:CDS |
| TGCCACAATGATTTGCAATA+TGG | 0.280053 | 3.4:+9319900 | MS.gene046260:CDS |
| GTAGGAGTCGCCTGGTTTAC+AGG | 0.321895 | 3.4:-9318631 | None:intergenic |
| ACCAGAGTTCTTCGATCCTT+TGG | 0.338796 | 3.4:-9322846 | None:intergenic |
| ACTAGATGCAAATGCGTTAC+AGG | 0.349443 | 3.4:+9319008 | MS.gene046260:CDS |
| GTACCCTCAGGGGTATTAAA+AGG | 0.354524 | 3.4:-9322678 | None:intergenic |
| CAAAGAGAAACTCACTATTA+TGG | 0.357350 | 3.4:-9319958 | None:intergenic |
| AGAATCTCCTTTGCTTCTGC+TGG | 0.358458 | 3.4:-9318955 | None:intergenic |
| GGGCCTTTGGGGAATAATTT+CGG | 0.370418 | 3.4:+9321624 | MS.gene046260:CDS |
| AGGAGCGTGAAAGATTTGTT+AGG | 0.370918 | 3.4:+9321215 | MS.gene046260:CDS |
| CCACCTAAAGTGTCATTTAC+GGG | 0.371609 | 3.4:-9318739 | None:intergenic |
| ACAGAGGTTTCAAGAGTATT+GGG | 0.371611 | 3.4:+9322617 | MS.gene046260:CDS |
| GTGAAAAGAAAGCCAATCTT+TGG | 0.373883 | 3.4:+9319618 | MS.gene046260:CDS |
| CCTCACGAAAGGTTCTTGTT+AGG | 0.384064 | 3.4:+9319100 | MS.gene046260:CDS |
| CGAAGAACTCTGGTATCTTC+AGG | 0.394810 | 3.4:+9322855 | MS.gene046260:CDS |
| ACAGGGGTTTCAATGGCATC+TGG | 0.397243 | 3.4:-9318910 | None:intergenic |
| AACAGAGGTTTCAAGAGTAT+TGG | 0.403796 | 3.4:+9322616 | MS.gene046260:CDS |
| GAGGTTTCCTCCGTTGTAGC+TGG | 0.416370 | 3.4:-9319081 | None:intergenic |
| GGCCGCTATAAGAGCAGAAA+TGG | 0.419826 | 3.4:-9319561 | None:intergenic |
| AAGGTTCTTGTTAGGATCTA+CGG | 0.422916 | 3.4:+9319108 | MS.gene046260:CDS |
| ACCACCTAAAGTGTCATTTA+CGG | 0.432131 | 3.4:-9318740 | None:intergenic |
| CACCAGGCATATCTAGATCA+TGG | 0.437311 | 3.4:-9319598 | None:intergenic |
| GCATCAGAGCTTAGAAGATA+AGG | 0.442159 | 3.4:-9322648 | None:intergenic |
| GCTGCTTACAGGGGTTTCAA+TGG | 0.448428 | 3.4:-9318917 | None:intergenic |
| GGAGCGTGAAAGATTTGTTA+GGG | 0.461297 | 3.4:+9321216 | MS.gene046260:CDS |
| GATATCATTAGCAGGTAAAT+GGG | 0.461907 | 3.4:+9318978 | MS.gene046260:CDS |
| GATTCTTCCGCAATGGGTGC+AGG | 0.463434 | 3.4:+9318568 | None:intergenic |
| GGTCAGCTTTGCTGCTTACA+GGG | 0.464141 | 3.4:-9318927 | None:intergenic |
| AGGTTCTTGTTAGGATCTAC+GGG | 0.464881 | 3.4:+9319109 | MS.gene046260:CDS |
| CCTCAATGTAGGCCAAAGAT+TGG | 0.466655 | 3.4:-9319630 | None:intergenic |
| GGTCAGGGACCTCGTCTACT+AGG | 0.470717 | 3.4:+9319198 | MS.gene046260:CDS |
| TGCTCCACTTCACTCTCACT+TGG | 0.482533 | 3.4:-9321553 | None:intergenic |
| CACAATTGAATTTGACTACA+AGG | 0.487535 | 3.4:+9322584 | MS.gene046260:CDS |
| TTGCTATAATCAAGAATATG+AGG | 0.491630 | 3.4:-9321094 | None:intergenic |
| GTACATGTCAAAGAATGGTC+AGG | 0.492273 | 3.4:+9319182 | MS.gene046260:CDS |
| GAATATGAGGCGTTTCTGTA+TGG | 0.492535 | 3.4:-9321081 | None:intergenic |
| TAGGATCTACGGGGAGGGTG+TGG | 0.493067 | 3.4:+9319119 | MS.gene046260:CDS |
| AATGATACAGCAGGTGATGA+TGG | 0.495476 | 3.4:+9318811 | MS.gene046260:CDS |
| AGGGGATATTTGAAGACCTC+AGG | 0.498453 | 3.4:+9321235 | MS.gene046260:CDS |
| ACTTCTCAACTTCTTGTAGC+AGG | 0.499317 | 3.4:-9321576 | None:intergenic |
| TTGATAGGGATGATGAAATA+CGG | 0.500021 | 3.4:+9319151 | MS.gene046260:CDS |
| GCGTCCGCAGCGCACGCCAA+AGG | 0.501248 | 3.4:+9322830 | MS.gene046260:CDS |
| TTTAATACCCCTGAGGGTAC+AGG | 0.501366 | 3.4:+9322681 | MS.gene046260:CDS |
| TTTGTCTTCTCCAAAAGAAG+TGG | 0.502871 | 3.4:+9319794 | MS.gene046260:CDS |
| TCAGGCTCGCATCAACGGAT+AGG | 0.503411 | 3.4:+9319873 | MS.gene046260:CDS |
| CTTGATTATAGCAAATATCC+TGG | 0.508261 | 3.4:+9321103 | MS.gene046260:CDS |
| ATGAGGTATTTGAAATAAAG+TGG | 0.508683 | 3.4:+9319058 | MS.gene046260:CDS |
| AATCAAATACCTGTACCCTC+AGG | 0.510529 | 3.4:-9322690 | None:intergenic |
| CCAATCTTTGGCCTACATTG+AGG | 0.512237 | 3.4:+9319630 | MS.gene046260:CDS |
| TCTTATAGCGGCCAAAATGA+AGG | 0.519658 | 3.4:+9319571 | MS.gene046260:CDS |
| CAGGCTCGCATCAACGGATA+GGG | 0.520005 | 3.4:+9319874 | MS.gene046260:CDS |
| TCGCAGCCATCTCACAAAAG+TGG | 0.525991 | 3.4:-9321054 | None:intergenic |
| AACCCCGTAAATGACACTTT+AGG | 0.528458 | 3.4:+9318736 | MS.gene046260:CDS |
| TTTGCTATATCATACGCTAC+AGG | 0.530263 | 3.4:-9321031 | None:intergenic |
| ATCAAATACCTGTACCCTCA+GGG | 0.530271 | 3.4:-9322689 | None:intergenic |
| TTTGAGTACATGTCAAAGAA+TGG | 0.530571 | 3.4:+9319177 | MS.gene046260:CDS |
| AGCTGTCAGGCTCGCATCAA+CGG | 0.536968 | 3.4:+9319868 | MS.gene046260:CDS |
| TGAAGAGTTTATACATGCAC+GGG | 0.537689 | 3.4:+9319242 | MS.gene046260:CDS |
| TTATGTACATACCTCAATGT+AGG | 0.540731 | 3.4:-9319641 | None:intergenic |
| CGATCCTTTGGCGTGCGCTG+CGG | 0.542797 | 3.4:-9322834 | None:intergenic |
| CTTGTTAGGATCTACGGGGA+GGG | 0.546574 | 3.4:+9319114 | MS.gene046260:CDS |
| TCTCCTTTGCTTCTGCTGGA+AGG | 0.547716 | 3.4:-9318951 | None:intergenic |
| GAGATTCTGATATCATTAGC+AGG | 0.548741 | 3.4:+9318970 | MS.gene046260:CDS |
| GCAGGTGATGATGGAAAAGA+AGG | 0.548923 | 3.4:+9318820 | MS.gene046260:CDS |
| CACTATTATGGTCACAGAGT+TGG | 0.554152 | 3.4:-9319946 | None:intergenic |
| TTACAGGTGATCCCTCTCAA+GGG | 0.554414 | 3.4:+9319024 | MS.gene046260:CDS |
| TTGAAGAGTTTATACATGCA+CGG | 0.561716 | 3.4:+9319241 | MS.gene046260:CDS |
| TTTCTGTAGTAGGAGTCGCC+TGG | 0.566230 | 3.4:-9318639 | None:intergenic |
| TTCCATGATCTAGATATGCC+TGG | 0.568317 | 3.4:+9319596 | MS.gene046260:CDS |
| ATCCATTTCTGCTCTTATAG+CGG | 0.576198 | 3.4:+9319559 | MS.gene046260:CDS |
| TGCTGAGAATCCTGTAAACC+AGG | 0.576627 | 3.4:+9318621 | MS.gene046260:CDS |
| CCGCCTTCCAGCAGAAGCAA+AGG | 0.580944 | 3.4:+9318948 | MS.gene046260:CDS |
| AGAACCAAGTGAGAGTGAAG+TGG | 0.582495 | 3.4:+9321549 | MS.gene046260:CDS |
| CACCTAAAGTGTCATTTACG+GGG | 0.582742 | 3.4:-9318738 | None:intergenic |
| GGTTCTCTTGACAGACGTTG+AGG | 0.584712 | 3.4:+9321195 | MS.gene046260:intron |
| AATTCTACAAATGATACAGC+AGG | 0.584713 | 3.4:+9318802 | MS.gene046260:CDS |
| GCCAAAGGATCGAAGAACTC+TGG | 0.587761 | 3.4:+9322845 | MS.gene046260:CDS |
| CCTATAAGCAATCAAGCAGG+TGG | 0.589660 | 3.4:+9318664 | MS.gene046260:CDS |
| GTTACAGGTGATCCCTCTCA+AGG | 0.595301 | 3.4:+9319023 | MS.gene046260:CDS |
| AATAAAGTGGCCAGCTACAA+CGG | 0.598692 | 3.4:+9319071 | MS.gene046260:CDS |
| GTCAGCTTTGCTGCTTACAG+GGG | 0.606553 | 3.4:-9318926 | None:intergenic |
| AAAGTGGCCAGCTACAACGG+AGG | 0.608846 | 3.4:+9319074 | MS.gene046260:CDS |
| TATAAGCAATCAAGCAGGTG+GGG | 0.609550 | 3.4:+9318666 | MS.gene046260:CDS |
| TACCATATTGCAAATCATTG+TGG | 0.610437 | 3.4:-9319902 | None:intergenic |
| CTTCAGAAATTGGCTTAGTG+AGG | 0.612289 | 3.4:+9319764 | MS.gene046260:intron |
| TACATGTCAAAGAATGGTCA+GGG | 0.612766 | 3.4:+9319183 | MS.gene046260:CDS |
| CCTTTGCTTCTGCTGGAAGG+CGG | 0.617396 | 3.4:-9318948 | None:intergenic |
| TTATTTGGACACGGTCGACA+AGG | 0.618896 | 3.4:+9319824 | MS.gene046260:CDS |
| GTTGCAAAAGACCAAGCAGT+TGG | 0.619982 | 3.4:+9318706 | MS.gene046260:CDS |
| TCAGGGGTATTAAAAGGAGA+AGG | 0.620836 | 3.4:-9322672 | None:intergenic |
| AATCCTATAAGCAATCAAGC+AGG | 0.622217 | 3.4:+9318661 | MS.gene046260:CDS |
| GCTATAAGAGCAGAAATGGA+TGG | 0.622251 | 3.4:-9319557 | None:intergenic |
| AACGGAGGAAACCTCACGAA+AGG | 0.628248 | 3.4:+9319089 | MS.gene046260:CDS |
| TACAGGTGATCCCTCTCAAG+GGG | 0.630983 | 3.4:+9319025 | MS.gene046260:CDS |
| CTATAAGCAATCAAGCAGGT+GGG | 0.632457 | 3.4:+9318665 | MS.gene046260:CDS |
| GGTGCTATGAAAGACAAAGC+AGG | 0.639091 | 3.4:+9318841 | MS.gene046260:CDS |
| CCCGTAAATGACACTTTAGG+TGG | 0.644090 | 3.4:+9318739 | MS.gene046260:CDS |
| CCTAACAAGAACCTTTCGTG+AGG | 0.644921 | 3.4:-9319100 | None:intergenic |
| TCTTGTTAGGATCTACGGGG+AGG | 0.648442 | 3.4:+9319113 | MS.gene046260:CDS |
| GGTTTCAAGAGTATTGGGCA+AGG | 0.650192 | 3.4:+9322622 | MS.gene046260:CDS |
| ATCATTAGCAGGTAAATGGG+AGG | 0.658690 | 3.4:+9318981 | MS.gene046260:CDS |
| GAGCGTGAAAGATTTGTTAG+GGG | 0.665492 | 3.4:+9321217 | MS.gene046260:CDS |
| TCAAATACCTGTACCCTCAG+GGG | 0.678051 | 3.4:-9322688 | None:intergenic |
| ATACCGAAATTATTCCCCAA+AGG | 0.681258 | 3.4:-9321627 | None:intergenic |
| GCAGGTGAAGATGACAAACA+AGG | 0.687986 | 3.4:+9318859 | MS.gene046260:CDS |
| ACAAGGAGTATGCGAAACAG+AGG | 0.696997 | 3.4:+9322601 | MS.gene046260:CDS |
| GTAAAACGTCCTAGTAGACG+AGG | 0.707228 | 3.4:-9319207 | None:intergenic |
| ACAGGTGATCCCTCTCAAGG+GGG | 0.737784 | 3.4:+9319026 | MS.gene046260:CDS |
| GGTTCTTGTTAGGATCTACG+GGG | 0.808372 | 3.4:+9319110 | MS.gene046260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAAAAAAAATGAAAAAA+GGG | + | chr3.4:9320382-9320401 | MS.gene046260:intron | 10.0% |
| !! | TTTGTAAAAAAAATGAAAAA+AGG | + | chr3.4:9320381-9320400 | MS.gene046260:intron | 10.0% |
| !!! | ATATTTAATTTAATTTTCGT+TGG | + | chr3.4:9320038-9320057 | MS.gene046260:intron | 10.0% |
| !!! | CCTTTTATTTTTATTTTTTT+GGG | + | chr3.4:9321325-9321344 | MS.gene046260:intron | 10.0% |
| !!! | TATATATAATTATTGTTTTC+AGG | + | chr3.4:9322800-9322819 | MS.gene046260:intron | 10.0% |
| !!! | TATTTTTTACTTTTAAAACA+GGG | - | chr3.4:9320487-9320506 | None:intergenic | 10.0% |
| !!! | TCCTTTTATTTTTATTTTTT+TGG | + | chr3.4:9321324-9321343 | MS.gene046260:intron | 10.0% |
| !!! | TTATTTTTTACTTTTAAAAC+AGG | - | chr3.4:9320488-9320507 | None:intergenic | 10.0% |
| !! | ACATTAAATCATAAGATATT+TGG | - | chr3.4:9320973-9320992 | None:intergenic | 15.0% |
| !! | CCCAAAAAAATAAAAATAAA+AGG | - | chr3.4:9321328-9321347 | None:intergenic | 15.0% |
| !! | GTTGCAAAAATAAAAATAAA+AGG | - | chr3.4:9321876-9321895 | None:intergenic | 15.0% |
| !!! | AAGTTTCTAGAAAATTATTT+TGG | + | chr3.4:9322239-9322258 | MS.gene046260:intron | 15.0% |
| !!! | AATTTTTTTGACAAAACAAA+AGG | - | chr3.4:9320230-9320249 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGACAAAACAAAA+GGG | - | chr3.4:9320229-9320248 | None:intergenic | 15.0% |
| !!! | CTTTTGTAATTTTAAATGTT+TGG | + | chr3.4:9322471-9322490 | MS.gene046260:intron | 15.0% |
| !!! | TTTAAAATTGTGTACATATT+GGG | + | chr3.4:9320775-9320794 | MS.gene046260:intron | 15.0% |
| !!! | TTTATAATGCATCAATTTTA+TGG | - | chr3.4:9319361-9319380 | None:intergenic | 15.0% |
| !!! | TTTTAAAATTGTGTACATAT+TGG | + | chr3.4:9320774-9320793 | MS.gene046260:intron | 15.0% |
| !! | AAAAAAATTGTCAACGAAAA+AGG | - | chr3.4:9320259-9320278 | None:intergenic | 20.0% |
| !! | AATAAACCTATCTGTATTTA+TGG | + | chr3.4:9320638-9320657 | MS.gene046260:intron | 20.0% |
| !! | AATATGAATTAACCATAAGT+GGG | + | chr3.4:9322408-9322427 | MS.gene046260:intron | 20.0% |
| !! | ATTCATGATTATATGAATGA+TGG | - | chr3.4:9321468-9321487 | None:intergenic | 20.0% |
| !! | CAAAAATAAAAATAAAAGGC+GGG | - | chr3.4:9321872-9321891 | None:intergenic | 20.0% |
| !! | GCAAAAATAAAAATAAAAGG+CGG | - | chr3.4:9321873-9321892 | None:intergenic | 20.0% |
| !! | TCAATGAACAAATAAAACAA+AGG | - | chr3.4:9320866-9320885 | None:intergenic | 20.0% |
| !!! | AAATTATTTTGGTCATTTTG+AGG | + | chr3.4:9322250-9322269 | MS.gene046260:intron | 20.0% |
| !!! | AACATTTTTGTCAGTAAAAA+GGG | - | chr3.4:9320203-9320222 | None:intergenic | 20.0% |
| !!! | AATTTTCTAGAAACTTAGAA+GGG | - | chr3.4:9322235-9322254 | None:intergenic | 20.0% |
| !!! | ATTATATAATTAGTCTGCAA+AGG | - | chr3.4:9320020-9320039 | None:intergenic | 20.0% |
| !!! | GAAATGTATTTTATCTTTGT+TGG | + | chr3.4:9321841-9321860 | MS.gene046260:intron | 20.0% |
| !!! | GAATGATGATTCTTTATTTT+TGG | - | chr3.4:9320615-9320634 | None:intergenic | 20.0% |
| !!! | TAACATTTTTGTCAGTAAAA+AGG | - | chr3.4:9320204-9320223 | None:intergenic | 20.0% |
| !!! | TAATTTTCTAGAAACTTAGA+AGG | - | chr3.4:9322236-9322255 | None:intergenic | 20.0% |
| !!! | TGTATCATTTGTAGAATTTT+CGG | - | chr3.4:9318800-9318819 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTAAATGTTTGG+CGG | + | chr3.4:9322474-9322493 | MS.gene046260:intron | 20.0% |
| ! | ACTAGTATCACTTCAAATTT+AGG | + | chr3.4:9319381-9319400 | MS.gene046260:intron | 25.0% |
| ! | AGTTATTTAACAAACACACT+AGG | + | chr3.4:9321732-9321751 | MS.gene046260:intron | 25.0% |
| ! | ATGAACAAATAAAACAAAGG+AGG | - | chr3.4:9320863-9320882 | None:intergenic | 25.0% |
| ! | ATTATTCTTCTTTGTACTCT+TGG | + | chr3.4:9321678-9321697 | MS.gene046260:intron | 25.0% |
| ! | GAATATGAATTAACCATAAG+TGG | + | chr3.4:9322407-9322426 | MS.gene046260:intron | 25.0% |
| ! | GGCAAAAAAAAAAATAACGA+AGG | - | chr3.4:9320952-9320971 | None:intergenic | 25.0% |
| ! | TACAAACAAAATTCTTCCAT+AGG | - | chr3.4:9320367-9320386 | None:intergenic | 25.0% |
| ! | TATTTCAATGCTTCAGAAAT+TGG | + | chr3.4:9319754-9319773 | MS.gene046260:intron | 25.0% |
| ! | TTACAAAAGAAATTGCATTG+TGG | - | chr3.4:9322460-9322479 | None:intergenic | 25.0% |
| ! | TTATTCACACACAAAAATGT+TGG | + | chr3.4:9322757-9322776 | MS.gene046260:intron | 25.0% |
| ! | TTGCTATAATCAAGAATATG+AGG | - | chr3.4:9321097-9321116 | None:intergenic | 25.0% |
| ! | TTTAATGTTATGTCTGTAAC+AGG | + | chr3.4:9320985-9321004 | MS.gene046260:intron | 25.0% |
| ! | TTTGTTCCAAATCATGAAAT+AGG | - | chr3.4:9321388-9321407 | None:intergenic | 25.0% |
| !! | ATATGAATGATGGAATACAA+GGG | - | chr3.4:9321458-9321477 | None:intergenic | 25.0% |
| !! | ATGAGGTATTTGAAATAAAG+TGG | + | chr3.4:9319058-9319077 | MS.gene046260:CDS | 25.0% |
| !! | GATAATTATTTCTTCAGAAC+AGG | - | chr3.4:9320065-9320084 | None:intergenic | 25.0% |
| !! | TATATGAATGATGGAATACA+AGG | - | chr3.4:9321459-9321478 | None:intergenic | 25.0% |
| !! | TGTGGAAATTTTCTTTGATA+GGG | + | chr3.4:9319137-9319156 | MS.gene046260:CDS | 25.0% |
| !! | TTTGGAACAAAAAAGTTGTA+TGG | + | chr3.4:9321397-9321416 | MS.gene046260:intron | 25.0% |
| !!! | GATTCTTTATTTTTGGACAA+GGG | - | chr3.4:9320608-9320627 | None:intergenic | 25.0% |
| !!! | GTTTTATTTGTTCATTGACA+TGG | + | chr3.4:9320868-9320887 | MS.gene046260:intron | 25.0% |
| !!! | TGATTCTTTATTTTTGGACA+AGG | - | chr3.4:9320609-9320628 | None:intergenic | 25.0% |
| !!! | TTTACTTTTAAAACAGGGTA+AGG | - | chr3.4:9320482-9320501 | None:intergenic | 25.0% |
| AATTCTACAAATGATACAGC+AGG | + | chr3.4:9318802-9318821 | MS.gene046260:CDS | 30.0% | |
| ACGATGAAAATAATTACCTG+AGG | - | chr3.4:9321254-9321273 | None:intergenic | 30.0% | |
| AGTTTCTGTTCCTGATATTA+TGG | + | chr3.4:9321509-9321528 | MS.gene046260:intron | 30.0% | |
| ATAAATTCAGAAGGGAAACA+TGG | - | chr3.4:9319507-9319526 | None:intergenic | 30.0% | |
| ATATGTTTCCACAATACTGT+TGG | - | chr3.4:9322200-9322219 | None:intergenic | 30.0% | |
| ATCAATGTTGTGTAACTCAA+AGG | - | chr3.4:9320580-9320599 | None:intergenic | 30.0% | |
| ATGAAAAGGAGTCAAAAAAC+AGG | - | chr3.4:9322175-9322194 | None:intergenic | 30.0% | |
| CAAAGAGAAACTCACTATTA+TGG | - | chr3.4:9319961-9319980 | None:intergenic | 30.0% | |
| CACAATTGAATTTGACTACA+AGG | + | chr3.4:9322584-9322603 | MS.gene046260:CDS | 30.0% | |
| CATGTGAAATAATTAGTCAC+AGG | - | chr3.4:9321172-9321191 | None:intergenic | 30.0% | |
| CTGTGACTAATTATTTCACA+TGG | + | chr3.4:9321170-9321189 | MS.gene046260:intron | 30.0% | |
| CTTGATTATAGCAAATATCC+TGG | + | chr3.4:9321103-9321122 | MS.gene046260:CDS | 30.0% | |
| GACCTATTATTTCATTTGCA+AGG | - | chr3.4:9322736-9322755 | None:intergenic | 30.0% | |
| GATATCATTAGCAGGTAAAT+GGG | + | chr3.4:9318978-9318997 | MS.gene046260:CDS | 30.0% | |
| GATTATCCAAACAAATTGCT+TGG | + | chr3.4:9322338-9322357 | MS.gene046260:intron | 30.0% | |
| GTTTCTGTTCCTGATATTAT+GGG | + | chr3.4:9321510-9321529 | MS.gene046260:intron | 30.0% | |
| TACCATATTGCAAATCATTG+TGG | - | chr3.4:9319905-9319924 | None:intergenic | 30.0% | |
| TCAATGTTGTGTAACTCAAA+GGG | - | chr3.4:9320579-9320598 | None:intergenic | 30.0% | |
| TCAGCACTTATCTTTATGTT+GGG | + | chr3.4:9322119-9322138 | MS.gene046260:intron | 30.0% | |
| TGATATCATTAGCAGGTAAA+TGG | + | chr3.4:9318977-9318996 | MS.gene046260:CDS | 30.0% | |
| TGATGACCTATTTCATGATT+TGG | + | chr3.4:9321379-9321398 | MS.gene046260:intron | 30.0% | |
| TGCCTTGCAAATGAAATAAT+AGG | + | chr3.4:9322731-9322750 | MS.gene046260:intron | 30.0% | |
| TTATGTACATACCTCAATGT+AGG | - | chr3.4:9319644-9319663 | None:intergenic | 30.0% | |
| TTCAGCACTTATCTTTATGT+TGG | + | chr3.4:9322118-9322137 | MS.gene046260:intron | 30.0% | |
| TTGAAGAGTTTATACATGCA+CGG | + | chr3.4:9319241-9319260 | MS.gene046260:CDS | 30.0% | |
| TTGATAGGGATGATGAAATA+CGG | + | chr3.4:9319151-9319170 | MS.gene046260:CDS | 30.0% | |
| TTTGAGTACATGTCAAAGAA+TGG | + | chr3.4:9319177-9319196 | MS.gene046260:CDS | 30.0% | |
| ! | AAACTACAACCAAGTACTTT+TGG | + | chr3.4:9322497-9322516 | MS.gene046260:intron | 30.0% |
| ! | AACTGATTCACTCAATCATT+TGG | + | chr3.4:9320905-9320924 | MS.gene046260:intron | 30.0% |
| ! | AATAGTCCAAGCAATTTGTT+TGG | - | chr3.4:9322347-9322366 | None:intergenic | 30.0% |
| ! | AGAAGTGGAAGCTTTTTATT+TGG | + | chr3.4:9319809-9319828 | MS.gene046260:CDS | 30.0% |
| ! | CAAAATTCTTCCATAGGTTT+TGG | - | chr3.4:9320361-9320380 | None:intergenic | 30.0% |
| ! | CTTATAGGATTTTCTGTAGT+AGG | - | chr3.4:9318652-9318671 | None:intergenic | 30.0% |
| ! | GTGTGGAAATTTTCTTTGAT+AGG | + | chr3.4:9319136-9319155 | MS.gene046260:CDS | 30.0% |
| ! | TAAAAAGCTTCCACTTCTTT+TGG | - | chr3.4:9319807-9319826 | None:intergenic | 30.0% |
| ! | TTTTGGTAAAGTTCAGTTGA+AGG | - | chr3.4:9320344-9320363 | None:intergenic | 30.0% |
| !! | ATAAGTGCTGAAGATTCAAT+GGG | - | chr3.4:9322110-9322129 | None:intergenic | 30.0% |
| !! | CATTTTGAGGATTACATTCA+AGG | + | chr3.4:9322263-9322282 | MS.gene046260:intron | 30.0% |
| !! | GGAAATCTCTATTTTGGAAA+AGG | + | chr3.4:9319845-9319864 | MS.gene046260:CDS | 30.0% |
| !! | TGATACTTGGTTGATAAATG+TGG | - | chr3.4:9322307-9322326 | None:intergenic | 30.0% |
| AAAATGAAAAAAGGGCAACC+CGG | + | chr3.4:9320390-9320409 | MS.gene046260:intron | 35.0% | |
| AAATAACTTCTTCCTCTCCA+AGG | - | chr3.4:9321720-9321739 | None:intergenic | 35.0% | |
| AACCTATCTGTATTTATGGC+CGG | + | chr3.4:9320642-9320661 | MS.gene046260:intron | 35.0% | |
| AACTAACAGTCCAGTTCTTA+AGG | - | chr3.4:9321493-9321512 | None:intergenic | 35.0% | |
| AACTGTTCAAACCAATGATC+AGG | + | chr3.4:9321893-9321912 | MS.gene046260:intron | 35.0% | |
| AAGGTTCTTGTTAGGATCTA+CGG | + | chr3.4:9319108-9319127 | MS.gene046260:CDS | 35.0% | |
| AATCCTATAAGCAATCAAGC+AGG | + | chr3.4:9318661-9318680 | MS.gene046260:CDS | 35.0% | |
| AATGCTATGTTTCGAGATCA+TGG | + | chr3.4:9320506-9320525 | MS.gene046260:intron | 35.0% | |
| ACTGTTCAAACCAATGATCA+GGG | + | chr3.4:9321894-9321913 | MS.gene046260:intron | 35.0% | |
| AGAAACTTAGAAGGGTAGAA+GGG | - | chr3.4:9322227-9322246 | None:intergenic | 35.0% | |
| AGCGTCTGATAAATTCAGAA+GGG | - | chr3.4:9319515-9319534 | None:intergenic | 35.0% | |
| AGGATTACATTCAAGGATTG+GGG | + | chr3.4:9322270-9322289 | MS.gene046260:intron | 35.0% | |
| AGTCAAAAAACAGGTGAGAA+AGG | - | chr3.4:9322166-9322185 | None:intergenic | 35.0% | |
| ATACCGAAATTATTCCCCAA+AGG | - | chr3.4:9321630-9321649 | None:intergenic | 35.0% | |
| ATAGACTGACAAAAGAGAAG+TGG | + | chr3.4:9321777-9321796 | MS.gene046260:intron | 35.0% | |
| ATCCATTTCTGCTCTTATAG+CGG | + | chr3.4:9319559-9319578 | MS.gene046260:CDS | 35.0% | |
| ATCTTCTGATTATCTTGCTC+AGG | + | chr3.4:9322551-9322570 | MS.gene046260:intron | 35.0% | |
| CAATACTGTTGGTCATGAAA+AGG | - | chr3.4:9322189-9322208 | None:intergenic | 35.0% | |
| CAATGTTGTGTAACTCAAAG+GGG | - | chr3.4:9320578-9320597 | None:intergenic | 35.0% | |
| CTGAACTTTACCAAAACCTA+TGG | + | chr3.4:9320348-9320367 | MS.gene046260:intron | 35.0% | |
| GACTAATTATTTCACATGGC+TGG | + | chr3.4:9321174-9321193 | MS.gene046260:intron | 35.0% | |
| GAGATTCTGATATCATTAGC+AGG | + | chr3.4:9318970-9318989 | MS.gene046260:CDS | 35.0% | |
| GAGGATTACATTCAAGGATT+GGG | + | chr3.4:9322269-9322288 | MS.gene046260:intron | 35.0% | |
| GATTCACTCAATCATTTGGT+TGG | + | chr3.4:9320909-9320928 | MS.gene046260:intron | 35.0% | |
| GTGAAAAGAAAGCCAATCTT+TGG | + | chr3.4:9319618-9319637 | MS.gene046260:CDS | 35.0% | |
| TACATGTCAAAGAATGGTCA+GGG | + | chr3.4:9319183-9319202 | MS.gene046260:CDS | 35.0% | |
| TAGAAACTTAGAAGGGTAGA+AGG | - | chr3.4:9322228-9322247 | None:intergenic | 35.0% | |
| TAGTAAATACCCCTGATCAT+TGG | - | chr3.4:9321907-9321926 | None:intergenic | 35.0% | |
| TAGTCTGAGAAATGATGTTG+AGG | - | chr3.4:9319731-9319750 | None:intergenic | 35.0% | |
| TCATGAATGACCTTAAGAAC+TGG | + | chr3.4:9321480-9321499 | MS.gene046260:intron | 35.0% | |
| TCTTCTGATTATCTTGCTCA+GGG | + | chr3.4:9322552-9322571 | MS.gene046260:intron | 35.0% | |
| TCTTTATGTTGGGACATTAG+AGG | + | chr3.4:9322129-9322148 | MS.gene046260:intron | 35.0% | |
| TGAAGAGTTTATACATGCAC+GGG | + | chr3.4:9319242-9319261 | MS.gene046260:CDS | 35.0% | |
| TGAGGATTACATTCAAGGAT+TGG | + | chr3.4:9322268-9322287 | MS.gene046260:intron | 35.0% | |
| TTATCAACCAAGTATCAGAC+TGG | + | chr3.4:9322310-9322329 | MS.gene046260:intron | 35.0% | |
| TTATGAACCGTAACACTTCA+GGG | - | chr3.4:9319424-9319443 | None:intergenic | 35.0% | |
| TTCTTCTTTGTACTCTTGGA+TGG | + | chr3.4:9321682-9321701 | MS.gene046260:intron | 35.0% | |
| TTTATGAACCGTAACACTTC+AGG | - | chr3.4:9319425-9319444 | None:intergenic | 35.0% | |
| TTTCATGACCAACAGTATTG+TGG | + | chr3.4:9322189-9322208 | MS.gene046260:intron | 35.0% | |
| TTTGTCTTCTCCAAAAGAAG+TGG | + | chr3.4:9319794-9319813 | MS.gene046260:CDS | 35.0% | |
| ! | AACAGAGGTTTCAAGAGTAT+TGG | + | chr3.4:9322616-9322635 | MS.gene046260:CDS | 35.0% |
| ! | ACTCGCAAATCATCTTTTCT+GGG | + | chr3.4:9321603-9321622 | MS.gene046260:CDS | 35.0% |
| ! | AGGAAGATGAAGAGAGTTTT+GGG | + | chr3.4:9322875-9322894 | MS.gene046260:CDS | 35.0% |
| ! | ATCATGGAACTCCTTCATTT+TGG | - | chr3.4:9319585-9319604 | None:intergenic | 35.0% |
| ! | CGACAAGGAAATCTCTATTT+TGG | + | chr3.4:9319839-9319858 | MS.gene046260:CDS | 35.0% |
| ! | CTACTAGGACGTTTTACAAA+TGG | + | chr3.4:9319213-9319232 | MS.gene046260:CDS | 35.0% |
| ! | TGCCACAATGATTTGCAATA+TGG | + | chr3.4:9319900-9319919 | MS.gene046260:CDS | 35.0% |
| ! | TGGTCTTTTGCAACATTTAC+AGG | - | chr3.4:9318700-9318719 | None:intergenic | 35.0% |
| ! | TTTGCTATATCATACGCTAC+AGG | - | chr3.4:9321034-9321053 | None:intergenic | 35.0% |
| !! | ACAGAGGTTTCAAGAGTATT+GGG | + | chr3.4:9322617-9322636 | MS.gene046260:CDS | 35.0% |
| !! | ACCACCTAAAGTGTCATTTA+CGG | - | chr3.4:9318743-9318762 | None:intergenic | 35.0% |
| !! | GATAAGTGCTGAAGATTCAA+TGG | - | chr3.4:9322111-9322130 | None:intergenic | 35.0% |
| !! | GGAAGCTTTTTATTTGGACA+CGG | + | chr3.4:9319815-9319834 | MS.gene046260:CDS | 35.0% |
| !! | TTTTGGAGAAGACAAACGTT+TGG | - | chr3.4:9319790-9319809 | None:intergenic | 35.0% |
| !!! | TCTTTATTTTTGGACAAGGG+AGG | - | chr3.4:9320605-9320624 | None:intergenic | 35.0% |
| AACCCCGTAAATGACACTTT+AGG | + | chr3.4:9318736-9318755 | MS.gene046260:CDS | 40.0% | |
| AATAAAGTGGCCAGCTACAA+CGG | + | chr3.4:9319071-9319090 | MS.gene046260:CDS | 40.0% | |
| AATATCCTGGTATGAACCTG+TGG | + | chr3.4:9321116-9321135 | MS.gene046260:intron | 40.0% | |
| AATCAAATACCTGTACCCTC+AGG | - | chr3.4:9322693-9322712 | None:intergenic | 40.0% | |
| AATGATACAGCAGGTGATGA+TGG | + | chr3.4:9318811-9318830 | MS.gene046260:CDS | 40.0% | |
| ACTAGATGCAAATGCGTTAC+AGG | + | chr3.4:9319008-9319027 | MS.gene046260:CDS | 40.0% | |
| ACTTCTCAACTTCTTGTAGC+AGG | - | chr3.4:9321579-9321598 | None:intergenic | 40.0% | |
| AGCTAGCTATTCATCGACAA+TGG | + | chr3.4:9322003-9322022 | MS.gene046260:intron | 40.0% | |
| AGGTTCTTGTTAGGATCTAC+GGG | + | chr3.4:9319109-9319128 | MS.gene046260:CDS | 40.0% | |
| ATATTATGGGACTTGAACGC+AGG | + | chr3.4:9321523-9321542 | MS.gene046260:intron | 40.0% | |
| ATCAAATACCTGTACCCTCA+GGG | - | chr3.4:9322692-9322711 | None:intergenic | 40.0% | |
| ATCATTAGCAGGTAAATGGG+AGG | + | chr3.4:9318981-9319000 | MS.gene046260:CDS | 40.0% | |
| ATCCGGCCATAAATACAGAT+AGG | - | chr3.4:9320647-9320666 | None:intergenic | 40.0% | |
| ATTGATGAGAAGCCCACTTA+TGG | - | chr3.4:9322423-9322442 | None:intergenic | 40.0% | |
| CACTATTATGGTCACAGAGT+TGG | - | chr3.4:9319949-9319968 | None:intergenic | 40.0% | |
| CAGCGTCTGATAAATTCAGA+AGG | - | chr3.4:9319516-9319535 | None:intergenic | 40.0% | |
| CCCACATTCAAAATGCTATC+CGG | - | chr3.4:9320664-9320683 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3.4:9320456-9320475 | None:intergenic | 40.0% | |
| CGTTCAAGTCCCATAATATC+AGG | - | chr3.4:9321522-9321541 | None:intergenic | 40.0% | |
| CTATAAGCAATCAAGCAGGT+GGG | + | chr3.4:9318665-9318684 | MS.gene046260:CDS | 40.0% | |
| CTGTTCAAACCAATGATCAG+GGG | + | chr3.4:9321895-9321914 | MS.gene046260:intron | 40.0% | |
| CTTTGTACTCTTGGATGGTT+TGG | + | chr3.4:9321687-9321706 | MS.gene046260:intron | 40.0% | |
| GCACATCGAGTTCATAAGTT+TGG | - | chr3.4:9319475-9319494 | None:intergenic | 40.0% | |
| GCATCAGAGCTTAGAAGATA+AGG | - | chr3.4:9322651-9322670 | None:intergenic | 40.0% | |
| GCTATAAGAGCAGAAATGGA+TGG | - | chr3.4:9319560-9319579 | None:intergenic | 40.0% | |
| GTACATGTCAAAGAATGGTC+AGG | + | chr3.4:9319182-9319201 | MS.gene046260:CDS | 40.0% | |
| GTAGATGATTCTCAGCAAGA+AGG | - | chr3.4:9320738-9320757 | None:intergenic | 40.0% | |
| TATAAGCAATCAAGCAGGTG+GGG | + | chr3.4:9318666-9318685 | MS.gene046260:CDS | 40.0% | |
| TCAAAGTCCAGTCTGATACT+TGG | - | chr3.4:9322320-9322339 | None:intergenic | 40.0% | |
| TCTTATAGCGGCCAAAATGA+AGG | + | chr3.4:9319571-9319590 | MS.gene046260:CDS | 40.0% | |
| TGGTAAAGTTCAGTTGAAGG+AGG | - | chr3.4:9320341-9320360 | None:intergenic | 40.0% | |
| TGTCAGTCTATCAAAACCCT+TGG | - | chr3.4:9321768-9321787 | None:intergenic | 40.0% | |
| TGTGTACATATTGGGAGTCA+AGG | + | chr3.4:9320783-9320802 | MS.gene046260:intron | 40.0% | |
| TTCCATGATCTAGATATGCC+TGG | + | chr3.4:9319596-9319615 | MS.gene046260:CDS | 40.0% | |
| ! | ACTAGGTTTTTGTGCACCAA+GGG | + | chr3.4:9321749-9321768 | MS.gene046260:intron | 40.0% |
| ! | AGGAGCGTGAAAGATTTGTT+AGG | + | chr3.4:9321215-9321234 | MS.gene046260:CDS | 40.0% |
| ! | CACTCGCAAATCATCTTTTC+TGG | + | chr3.4:9321602-9321621 | MS.gene046260:CDS | 40.0% |
| ! | CAGGAAGATGAAGAGAGTTT+TGG | + | chr3.4:9322874-9322893 | MS.gene046260:CDS | 40.0% |
| ! | CCGGATAGCATTTTGAATGT+GGG | + | chr3.4:9320661-9320680 | MS.gene046260:intron | 40.0% |
| ! | CGGATAGCATTTTGAATGTG+GGG | + | chr3.4:9320662-9320681 | MS.gene046260:intron | 40.0% |
| ! | CTCGCAAATCATCTTTTCTG+GGG | + | chr3.4:9321604-9321623 | MS.gene046260:CDS | 40.0% |
| ! | CTTCAGAAATTGGCTTAGTG+AGG | + | chr3.4:9319764-9319783 | MS.gene046260:intron | 40.0% |
| ! | GAATATGAGGCGTTTCTGTA+TGG | - | chr3.4:9321084-9321103 | None:intergenic | 40.0% |
| ! | TCTCCTTTTAATACCCCTGA+GGG | + | chr3.4:9322675-9322694 | MS.gene046260:CDS | 40.0% |
| ! | TTCTCCTTTTAATACCCCTG+AGG | + | chr3.4:9322674-9322693 | MS.gene046260:CDS | 40.0% |
| ! | TTGTTCACCCTGAAGTGTTA+CGG | + | chr3.4:9319414-9319433 | MS.gene046260:intron | 40.0% |
| !! | ACTTCGAAGCCAAAAGTACT+TGG | - | chr3.4:9322509-9322528 | None:intergenic | 40.0% |
| !! | AGCAAACCACTTTTGTGAGA+TGG | + | chr3.4:9321048-9321067 | MS.gene046260:CDS | 40.0% |
| !! | ATTTTGGAAAAGGAGCTGTC+AGG | + | chr3.4:9319855-9319874 | MS.gene046260:CDS | 40.0% |
| !! | CACCTAAAGTGTCATTTACG+GGG | - | chr3.4:9318741-9318760 | None:intergenic | 40.0% |
| !! | CCACCTAAAGTGTCATTTAC+GGG | - | chr3.4:9318742-9318761 | None:intergenic | 40.0% |
| !! | GAGCGTGAAAGATTTGTTAG+GGG | + | chr3.4:9321217-9321236 | MS.gene046260:CDS | 40.0% |
| !! | GATGAATAGCTAGCTCTGAA+CGG | - | chr3.4:9321998-9322017 | None:intergenic | 40.0% |
| !! | GGAGCGTGAAAGATTTGTTA+GGG | + | chr3.4:9321216-9321235 | MS.gene046260:CDS | 40.0% |
| !! | TCAGGGGTATTAAAAGGAGA+AGG | - | chr3.4:9322675-9322694 | None:intergenic | 40.0% |
| !! | TCAGGGGTATTTACTATTCG+TGG | + | chr3.4:9321911-9321930 | MS.gene046260:intron | 40.0% |
| !!! | AGATTGGCTTTCTTTTCACC+AGG | - | chr3.4:9319617-9319636 | None:intergenic | 40.0% |
| !!! | ATGAAGAGAGTTTTGGGTCT+TGG | + | chr3.4:9322881-9322900 | MS.gene046260:CDS | 40.0% |
| ACCAGAGTTCTTCGATCCTT+TGG | - | chr3.4:9322849-9322868 | None:intergenic | 45.0% | |
| ACTATTCGTGGCTCGTTTCA+TGG | + | chr3.4:9321923-9321942 | MS.gene046260:intron | 45.0% | |
| AGAACCAAGTGAGAGTGAAG+TGG | + | chr3.4:9321549-9321568 | MS.gene046260:CDS | 45.0% | |
| AGAATCTCCTTTGCTTCTGC+TGG | - | chr3.4:9318958-9318977 | None:intergenic | 45.0% | |
| AGGGGATATTTGAAGACCTC+AGG | + | chr3.4:9321235-9321254 | MS.gene046260:CDS | 45.0% | |
| CACCAGGCATATCTAGATCA+TGG | - | chr3.4:9319601-9319620 | None:intergenic | 45.0% | |
| CCAATCTTTGGCCTACATTG+AGG | + | chr3.4:9319630-9319649 | MS.gene046260:CDS | 45.0% | |
| CCACCTGCTTGATTGCTTAT+AGG | - | chr3.4:9318667-9318686 | None:intergenic | 45.0% | |
| CCCGTAAATGACACTTTAGG+TGG | + | chr3.4:9318739-9318758 | MS.gene046260:CDS | 45.0% | |
| CCTAACAAGAACCTTTCGTG+AGG | - | chr3.4:9319103-9319122 | None:intergenic | 45.0% | |
| CCTATAAGCAATCAAGCAGG+TGG | + | chr3.4:9318664-9318683 | MS.gene046260:CDS | 45.0% | |
| CCTCAATGTAGGCCAAAGAT+TGG | - | chr3.4:9319633-9319652 | None:intergenic | 45.0% | |
| CCTCACGAAAGGTTCTTGTT+AGG | + | chr3.4:9319100-9319119 | MS.gene046260:CDS | 45.0% | |
| CGAAGAACTCTGGTATCTTC+AGG | + | chr3.4:9322855-9322874 | MS.gene046260:CDS | 45.0% | |
| CTATTCGTGGCTCGTTTCAT+GGG | + | chr3.4:9321924-9321943 | MS.gene046260:intron | 45.0% | |
| GCAGGTGAAGATGACAAACA+AGG | + | chr3.4:9318859-9318878 | MS.gene046260:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3.4:9320457-9320476 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3.4:9320460-9320479 | None:intergenic | 45.0% | |
| GGAAACCAACAACACTCATC+AGG | - | chr3.4:9320717-9320736 | None:intergenic | 45.0% | |
| GGTTCTTGTTAGGATCTACG+GGG | + | chr3.4:9319110-9319129 | MS.gene046260:CDS | 45.0% | |
| GTAAAACGTCCTAGTAGACG+AGG | - | chr3.4:9319210-9319229 | None:intergenic | 45.0% | |
| GTTCAGTTGAAGGAGGAAAC+AGG | - | chr3.4:9320334-9320353 | None:intergenic | 45.0% | |
| GTTGCAAAAGACCAAGCAGT+TGG | + | chr3.4:9318706-9318725 | MS.gene046260:CDS | 45.0% | |
| GTTGTGTAACTCAAAGGGGA+GGG | - | chr3.4:9320574-9320593 | None:intergenic | 45.0% | |
| TCAAATACCTGTACCCTCAG+GGG | - | chr3.4:9322691-9322710 | None:intergenic | 45.0% | |
| TGAATGCTTCAGAAAGCCAC+AGG | - | chr3.4:9321135-9321154 | None:intergenic | 45.0% | |
| TGCTGAGAATCCTGTAAACC+AGG | + | chr3.4:9318621-9318640 | MS.gene046260:CDS | 45.0% | |
| TGTTGTGTAACTCAAAGGGG+AGG | - | chr3.4:9320575-9320594 | None:intergenic | 45.0% | |
| TTACAGGTGATCCCTCTCAA+GGG | + | chr3.4:9319024-9319043 | MS.gene046260:CDS | 45.0% | |
| TTATTTGGACACGGTCGACA+AGG | + | chr3.4:9319824-9319843 | MS.gene046260:CDS | 45.0% | |
| TTGTGTAACTCAAAGGGGAG+GGG | - | chr3.4:9320573-9320592 | None:intergenic | 45.0% | |
| ! | ACAAGGAGTATGCGAAACAG+AGG | + | chr3.4:9322601-9322620 | MS.gene046260:CDS | 45.0% |
| ! | CACTAGGTTTTTGTGCACCA+AGG | + | chr3.4:9321748-9321767 | MS.gene046260:intron | 45.0% |
| ! | GCCGGATAGCATTTTGAATG+TGG | + | chr3.4:9320660-9320679 | MS.gene046260:intron | 45.0% |
| ! | GGGCCTTTGGGGAATAATTT+CGG | + | chr3.4:9321624-9321643 | MS.gene046260:CDS | 45.0% |
| ! | GGTGCTATGAAAGACAAAGC+AGG | + | chr3.4:9318841-9318860 | MS.gene046260:CDS | 45.0% |
| ! | TTTAATACCCCTGAGGGTAC+AGG | + | chr3.4:9322681-9322700 | MS.gene046260:CDS | 45.0% |
| !! | GCAGGTGATGATGGAAAAGA+AGG | + | chr3.4:9318820-9318839 | MS.gene046260:CDS | 45.0% |
| !! | GGTTTCAAGAGTATTGGGCA+AGG | + | chr3.4:9322622-9322641 | MS.gene046260:CDS | 45.0% |
| !! | GTACCCTCAGGGGTATTAAA+AGG | - | chr3.4:9322681-9322700 | None:intergenic | 45.0% |
| !!! | ATCATCTTTTCTGGGGCCTT+TGG | + | chr3.4:9321611-9321630 | MS.gene046260:CDS | 45.0% |
| !!! | TCATCTTTTCTGGGGCCTTT+GGG | + | chr3.4:9321612-9321631 | MS.gene046260:CDS | 45.0% |
| !!! | TTTTGGGTCTTGGCTTGTTC+AGG | + | chr3.4:9322891-9322910 | MS.gene046260:CDS | 45.0% |
| AACGGAGGAAACCTCACGAA+AGG | + | chr3.4:9319089-9319108 | MS.gene046260:CDS | 50.0% | |
| ACAGGGGTTTCAATGGCATC+TGG | - | chr3.4:9318913-9318932 | None:intergenic | 50.0% | |
| CAAGGGGGCAATGACAAATG+AGG | + | chr3.4:9319041-9319060 | MS.gene046260:CDS | 50.0% | |
| CTTGTTAGGATCTACGGGGA+GGG | + | chr3.4:9319114-9319133 | MS.gene046260:CDS | 50.0% | |
| GAAAGCCACAGGTTCATACC+AGG | - | chr3.4:9321124-9321143 | None:intergenic | 50.0% | |
| GCCAAAGGATCGAAGAACTC+TGG | + | chr3.4:9322845-9322864 | MS.gene046260:CDS | 50.0% | |
| GCTGCTTACAGGGGTTTCAA+TGG | - | chr3.4:9318920-9318939 | None:intergenic | 50.0% | |
| GGCCGCTATAAGAGCAGAAA+TGG | - | chr3.4:9319564-9319583 | None:intergenic | 50.0% | |
| GGTTCTCTTGACAGACGTTG+AGG | + | chr3.4:9321195-9321214 | MS.gene046260:intron | 50.0% | |
| GTTACAGGTGATCCCTCTCA+AGG | + | chr3.4:9319023-9319042 | MS.gene046260:CDS | 50.0% | |
| TACAGGTGATCCCTCTCAAG+GGG | + | chr3.4:9319025-9319044 | MS.gene046260:CDS | 50.0% | |
| TCAAAGGGGAGGGGATTTAC+AGG | - | chr3.4:9320564-9320583 | None:intergenic | 50.0% | |
| TCGCAGCCATCTCACAAAAG+TGG | - | chr3.4:9321057-9321076 | None:intergenic | 50.0% | |
| TCTCCTTTGCTTCTGCTGGA+AGG | - | chr3.4:9318954-9318973 | None:intergenic | 50.0% | |
| TCTTGTTAGGATCTACGGGG+AGG | + | chr3.4:9319113-9319132 | MS.gene046260:CDS | 50.0% | |
| TGCTCCACTTCACTCTCACT+TGG | - | chr3.4:9321556-9321575 | None:intergenic | 50.0% | |
| TTGTCATTGCCCCCTTGAGA+GGG | - | chr3.4:9319038-9319057 | None:intergenic | 50.0% | |
| TTTCTGTAGTAGGAGTCGCC+TGG | - | chr3.4:9318642-9318661 | None:intergenic | 50.0% | |
| TTTGTCATTGCCCCCTTGAG+AGG | - | chr3.4:9319039-9319058 | None:intergenic | 50.0% | |
| ! | GACAGCCTGATGAGTGTTGT+TGG | + | chr3.4:9320709-9320728 | MS.gene046260:intron | 50.0% |
| ! | GGTCAGCTTTGCTGCTTACA+GGG | - | chr3.4:9318930-9318949 | None:intergenic | 50.0% |
| ! | GGTTTTCTGCACCAACTGCT+TGG | - | chr3.4:9318720-9318739 | None:intergenic | 50.0% |
| ! | GTCAGCTTTGCTGCTTACAG+GGG | - | chr3.4:9318929-9318948 | None:intergenic | 50.0% |
| !! | GATGGTTTGGCTTGAGACCT+TGG | + | chr3.4:9321700-9321719 | MS.gene046260:intron | 50.0% |
| !! | TTTGGCTTGAGACCTTGGAG+AGG | + | chr3.4:9321705-9321724 | MS.gene046260:intron | 50.0% |
| !!! | CATCTTTTCTGGGGCCTTTG+GGG | + | chr3.4:9321613-9321632 | MS.gene046260:CDS | 50.0% |
| AAAGTGGCCAGCTACAACGG+AGG | + | chr3.4:9319074-9319093 | MS.gene046260:CDS | 55.0% | |
| ACAGGTGATCCCTCTCAAGG+GGG | + | chr3.4:9319026-9319045 | MS.gene046260:CDS | 55.0% | |
| AGCTGTCAGGCTCGCATCAA+CGG | + | chr3.4:9319868-9319887 | MS.gene046260:CDS | 55.0% | |
| CAGGCTCGCATCAACGGATA+GGG | + | chr3.4:9319874-9319893 | MS.gene046260:CDS | 55.0% | |
| CCTTTGCTTCTGCTGGAAGG+CGG | - | chr3.4:9318951-9318970 | None:intergenic | 55.0% | |
| GAGGTTTCCTCCGTTGTAGC+TGG | - | chr3.4:9319084-9319103 | None:intergenic | 55.0% | |
| GTAGGAGTCGCCTGGTTTAC+AGG | - | chr3.4:9318634-9318653 | None:intergenic | 55.0% | |
| TCAGGCTCGCATCAACGGAT+AGG | + | chr3.4:9319873-9319892 | MS.gene046260:CDS | 55.0% | |
| ! | CGGTCAGCTTTGCTGCTTAC+AGG | - | chr3.4:9318931-9318950 | None:intergenic | 55.0% |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr3.4:9320416-9320435 | MS.gene046260:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr3.4:9320412-9320431 | None:intergenic | 60.0% | |
| CCGCCTTCCAGCAGAAGCAA+AGG | + | chr3.4:9318948-9318967 | MS.gene046260:CDS | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr3.4:9320417-9320436 | MS.gene046260:intron | 60.0% | |
| GGTCAGGGACCTCGTCTACT+AGG | + | chr3.4:9319198-9319217 | MS.gene046260:CDS | 60.0% | |
| TAGGATCTACGGGGAGGGTG+TGG | + | chr3.4:9319119-9319138 | MS.gene046260:CDS | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3.4:9320444-9320463 | None:intergenic | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr3.4:9320429-9320448 | MS.gene046260:intron | 65.0% | |
| CGATCCTTTGGCGTGCGCTG+CGG | - | chr3.4:9322837-9322856 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3.4:9320442-9320461 | MS.gene046260:intron | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr3.4:9320429-9320448 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr3.4:9320428-9320447 | MS.gene046260:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr3.4:9320411-9320430 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr3.4:9320428-9320447 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr3.4:9320427-9320446 | MS.gene046260:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr3.4:9320423-9320442 | MS.gene046260:intron | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr3.4:9320422-9320441 | MS.gene046260:intron | 70.0% | |
| GCGTCCGCAGCGCACGCCAA+AGG | + | chr3.4:9322830-9322849 | MS.gene046260:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 9318580 | 9322925 | 9318580 | ID=MS.gene046260 |
| chr3.4 | mRNA | 9318580 | 9322925 | 9318580 | ID=MS.gene046260.t1;Parent=MS.gene046260 |
| chr3.4 | exon | 9318580 | 9319263 | 9318580 | ID=MS.gene046260.t1.exon1;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9318580 | 9319263 | 9318580 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| chr3.4 | exon | 9319530 | 9319651 | 9319530 | ID=MS.gene046260.t1.exon2;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9319530 | 9319651 | 9319530 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| chr3.4 | exon | 9319770 | 9319965 | 9319770 | ID=MS.gene046260.t1.exon3;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9319770 | 9319965 | 9319770 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| chr3.4 | exon | 9321007 | 9321124 | 9321007 | ID=MS.gene046260.t1.exon4;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9321007 | 9321124 | 9321007 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| chr3.4 | exon | 9321209 | 9321256 | 9321209 | ID=MS.gene046260.t1.exon5;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9321209 | 9321256 | 9321209 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| chr3.4 | exon | 9321545 | 9321645 | 9321545 | ID=MS.gene046260.t1.exon6;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9321545 | 9321645 | 9321545 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| chr3.4 | exon | 9322573 | 9322702 | 9322573 | ID=MS.gene046260.t1.exon7;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9322573 | 9322702 | 9322573 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| chr3.4 | exon | 9322822 | 9322925 | 9322822 | ID=MS.gene046260.t1.exon8;Parent=MS.gene046260.t1 |
| chr3.4 | CDS | 9322822 | 9322925 | 9322822 | ID=cds.MS.gene046260.t1;Parent=MS.gene046260.t1 |
| Gene Sequence |
| Protein sequence |
