Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046410.t1 | XP_003613054.1 | 93.5 | 169 | 9 | 1 | 2 | 168 | 60 | 228 | 2.50E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046410.t1 | Q9FVC1 | 54.2 | 179 | 68 | 2 | 4 | 168 | 62 | 240 | 2.6e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046410.t1 | G7JWF1 | 93.5 | 169 | 9 | 1 | 2 | 168 | 60 | 228 | 1.8e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010053 | MS.gene046410 | PPI |
| MS.gene78610 | MS.gene046410 | PPI |
| MS.gene85927 | MS.gene046410 | PPI |
| MS.gene061528 | MS.gene046410 | PPI |
| MS.gene046410 | MS.gene53154 | PPI |
| MS.gene55353 | MS.gene046410 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046410.t1 | MTR_5g032150 | 93.491 | 169 | 9 | 1 | 2 | 168 | 60 | 228 | 4.01e-110 | 313 |
| MS.gene046410.t1 | MTR_5g032150 | 94.012 | 167 | 8 | 1 | 4 | 168 | 1 | 167 | 4.24e-109 | 308 |
| MS.gene046410.t1 | MTR_5g032520 | 85.119 | 168 | 24 | 1 | 2 | 168 | 60 | 227 | 6.32e-100 | 287 |
| MS.gene046410.t1 | MTR_5g066180 | 46.061 | 165 | 84 | 5 | 4 | 166 | 62 | 223 | 1.73e-31 | 113 |
| MS.gene046410.t1 | MTR_4g093970 | 40.361 | 166 | 82 | 4 | 3 | 166 | 87 | 237 | 6.45e-21 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046410.t1 | AT2G22540 | 59.890 | 182 | 59 | 3 | 1 | 168 | 54 | 235 | 9.11e-66 | 201 |
| MS.gene046410.t1 | AT2G22540 | 60.894 | 179 | 56 | 3 | 4 | 168 | 62 | 240 | 1.88e-65 | 200 |
| MS.gene046410.t1 | AT2G22540 | 60.894 | 179 | 56 | 3 | 4 | 168 | 62 | 240 | 1.88e-65 | 200 |
| MS.gene046410.t1 | AT4G24540 | 48.193 | 166 | 72 | 6 | 4 | 165 | 62 | 217 | 2.35e-36 | 125 |
Find 49 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAAGGTCTCTTGAAAT+TGG | 0.157483 | 5.1:-22351205 | MS.gene046410:CDS |
| CCCTCATCTGCCTTAGTTGA+TGG | 0.253254 | 5.1:+22351269 | None:intergenic |
| GAATATTTCTAACCTTTCTT+TGG | 0.260465 | 5.1:+22351034 | None:intergenic |
| ACATTCCTTCAGCCGGCATA+TGG | 0.334671 | 5.1:+22349684 | None:intergenic |
| TATCTGAACTCTCATAATCT+TGG | 0.352501 | 5.1:+22349891 | None:intergenic |
| TGTGGAAGAATTACAACAAT+TGG | 0.369939 | 5.1:-22351224 | MS.gene046410:CDS |
| AAATTAATTGTTGTCATGTT+GGG | 0.372929 | 5.1:-22352394 | None:intergenic |
| CTCAAAGAACCTCGCAAAGC+TGG | 0.379678 | 5.1:-22351539 | MS.gene046410:CDS |
| ATCTGAACTCTCATAATCTT+GGG | 0.383551 | 5.1:+22349892 | None:intergenic |
| TGGAAAGGTCTCTTGAAATT+GGG | 0.386838 | 5.1:-22351204 | MS.gene046410:CDS |
| AGAACCGTCTCTTGAGTTGC+AGG | 0.416179 | 5.1:-22351515 | MS.gene046410:intron |
| TCAGATACATCGCTCAAGTT+GGG | 0.436087 | 5.1:-22349875 | MS.gene046410:CDS |
| ATGATGGATCATAAGGTTGC+GGG | 0.443250 | 5.1:-22350019 | MS.gene046410:intron |
| AGGTCTCTTGAAATTGGGTT+GGG | 0.470008 | 5.1:-22351199 | MS.gene046410:CDS |
| TTCAGATACATCGCTCAAGT+TGG | 0.479254 | 5.1:-22349876 | MS.gene046410:CDS |
| CATTCCTTCAGCCGGCATAT+GGG | 0.480333 | 5.1:+22349685 | None:intergenic |
| GATCAATGATCTCCAAAGAA+AGG | 0.499633 | 5.1:-22351046 | MS.gene046410:intron |
| AGATCTTGAAGGTTTGAATG+TGG | 0.507969 | 5.1:-22351242 | MS.gene046410:CDS |
| AAGGTCTCTTGAAATTGGGT+TGG | 0.514161 | 5.1:-22351200 | MS.gene046410:CDS |
| CTAAGAAGAGCCATCAACTA+AGG | 0.516193 | 5.1:-22351279 | MS.gene046410:CDS |
| ATCATACATGTTGCTTTAGT+CGG | 0.530014 | 5.1:+22350206 | None:intergenic |
| ATAATCTTGGGGAGGACCAA+TGG | 0.530085 | 5.1:+22349904 | None:intergenic |
| ATGAGGGGAGAAGATCTTGA+AGG | 0.541103 | 5.1:-22351253 | MS.gene046410:CDS |
| CCATCAACTAAGGCAGATGA+GGG | 0.557552 | 5.1:-22351269 | MS.gene046410:CDS |
| CACACAAACATTCCTTCAGC+CGG | 0.558090 | 5.1:+22349677 | None:intergenic |
| TATGAGAATGTGATTAATGA+AGG | 0.563013 | 5.1:-22349962 | MS.gene046410:CDS |
| TCAGGGAGAGAAGATCATGA+TGG | 0.564270 | 5.1:-22351070 | MS.gene046410:intron |
| CCTTGCTCAATCTAGAACAC+TGG | 0.565150 | 5.1:+22351308 | None:intergenic |
| ATTTGCAGGCTCCCATATGC+CGG | 0.566203 | 5.1:-22349696 | MS.gene046410:intron |
| GGCTCCCATATGCCGGCTGA+AGG | 0.566587 | 5.1:-22349689 | None:intergenic |
| GCCATCAACTAAGGCAGATG+AGG | 0.567486 | 5.1:-22351270 | MS.gene046410:CDS |
| ATGATTAACGACAGAATGGT+TGG | 0.571480 | 5.1:-22349995 | MS.gene046410:CDS |
| ACCAACGTTTACAACTCCAT+TGG | 0.576740 | 5.1:-22349920 | MS.gene046410:CDS |
| TCTGCAGGGAAGGCAACTGA+TGG | 0.577814 | 5.1:-22350239 | MS.gene046410:intron |
| AAGAATTACAACAATTGGAA+AGG | 0.580010 | 5.1:-22351219 | MS.gene046410:CDS |
| GGGCATGATTAACGACAGAA+TGG | 0.581587 | 5.1:-22349999 | MS.gene046410:CDS |
| AATTAATTGTTGTCATGTTG+GGG | 0.585285 | 5.1:-22352393 | None:intergenic |
| AACGTTGGTGACAGATTCTG+AGG | 0.592708 | 5.1:+22349934 | None:intergenic |
| CAGATACATCGCTCAAGTTG+GGG | 0.603531 | 5.1:-22349874 | MS.gene046410:intron |
| ACGGTTCTTCCAGCTTTGCG+AGG | 0.603660 | 5.1:+22351530 | None:intergenic |
| TGTGTTATGATGAAGCGTGA+GGG | 0.617556 | 5.1:-22351587 | MS.gene046410:intron |
| CCAGTGTTCTAGATTGAGCA+AGG | 0.618951 | 5.1:-22351308 | MS.gene046410:CDS |
| TCTGAACTCTCATAATCTTG+GGG | 0.621502 | 5.1:+22349893 | None:intergenic |
| GGGCCGTGTAATAGAAAACA+AGG | 0.627922 | 5.1:-22351179 | MS.gene046410:intron |
| ATTAACGACAGAATGGTTGG+AGG | 0.640229 | 5.1:-22349992 | MS.gene046410:CDS |
| CCAACCTGCAACTCAAGAGA+CGG | 0.649927 | 5.1:+22351511 | None:intergenic |
| ACCAATGGAGTTGTAAACGT+TGG | 0.652128 | 5.1:+22349919 | None:intergenic |
| GAACTCTCATAATCTTGGGG+AGG | 0.658116 | 5.1:+22349896 | None:intergenic |
| CATCAACTAAGGCAGATGAG+GGG | 0.714892 | 5.1:-22351268 | MS.gene046410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr5.1:22350347-22350328 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr5.1:22350346-22350327 | None:intergenic | 0.0% |
| !! | AATAACAAAAGTTTAAAAAT+AGG | - | chr5.1:22351331-22351350 | MS.gene046410:intron | 10.0% |
| !! | TGTATTTGTAAAAAAAAAAT+TGG | - | chr5.1:22351364-22351383 | MS.gene046410:intron | 10.0% |
| !!! | ATTTTGCTTATATTTTAAAA+CGG | - | chr5.1:22350054-22350073 | MS.gene046410:intron | 10.0% |
| !!! | TTTTTTTTTAATAATCAAAG+TGG | + | chr5.1:22351210-22351229 | None:intergenic | 10.0% |
| !! | AAAAAATTACTTGTATATGA+TGG | - | chr5.1:22352036-22352055 | MS.gene046410:intron | 15.0% |
| !! | AAAAATATCATGCAAATATT+GGG | + | chr5.1:22351985-22352004 | None:intergenic | 15.0% |
| !! | AACATGTTAGTTATATTAAT+TGG | - | chr5.1:22351070-22351089 | MS.gene046410:intron | 15.0% |
| !! | TAAAAATATCATGCAAATAT+TGG | + | chr5.1:22351986-22352005 | None:intergenic | 15.0% |
| !!! | AAATATCATTTTGTTTTTTC+AGG | - | chr5.1:22350983-22351002 | MS.gene046410:intron | 15.0% |
| !!! | AATATCATTTTGTTTTTTCA+GGG | - | chr5.1:22350984-22351003 | MS.gene046410:intron | 15.0% |
| !!! | AATGTTTTATTTGTTCATTT+TGG | + | chr5.1:22350648-22350667 | None:intergenic | 15.0% |
| !!! | ACTTTTACTAAAAATTGTAA+GGG | - | chr5.1:22351241-22351260 | MS.gene046410:CDS | 15.0% |
| !!! | ATAAGCAAAATTTACTTTTT+AGG | + | chr5.1:22350045-22350064 | None:intergenic | 15.0% |
| !!! | ATCATTCATTGTTATTTATT+TGG | - | chr5.1:22350441-22350460 | MS.gene046410:intron | 15.0% |
| !!! | ATTTTACTTATATTTTGACA+CGG | + | chr5.1:22349947-22349966 | None:intergenic | 15.0% |
| !!! | GATCTTTTTTTTTAACAAAA+TGG | - | chr5.1:22349835-22349854 | MS.gene046410:intron | 15.0% |
| !!! | TAAAAAAAAAAAGTACTAGT+AGG | + | chr5.1:22350930-22350949 | None:intergenic | 15.0% |
| !!! | TACTTTTACTAAAAATTGTA+AGG | - | chr5.1:22351240-22351259 | MS.gene046410:CDS | 15.0% |
| !!! | TTTTTTTTTGAAAAGCTATT+AGG | - | chr5.1:22349784-22349803 | MS.gene046410:intron | 15.0% |
| !! | ACACAATTTAATGTATGAAT+TGG | + | chr5.1:22351304-22351323 | None:intergenic | 20.0% |
| !! | TAAGTGAACTAATAATAATG+TGG | + | chr5.1:22352240-22352259 | None:intergenic | 20.0% |
| !! | TTATTTGGTATAATTTGACT+TGG | - | chr5.1:22350456-22350475 | MS.gene046410:intron | 20.0% |
| !! | TTCAAAAAAATCCAATCAAA+CGG | - | chr5.1:22350390-22350409 | MS.gene046410:intron | 20.0% |
| !!! | AAACCAACTAATTTTTATGA+AGG | - | chr5.1:22350156-22350175 | MS.gene046410:intron | 20.0% |
| !!! | AATGTAGAATTTCTTTTTGA+AGG | - | chr5.1:22352277-22352296 | MS.gene046410:intron | 20.0% |
| !!! | AATTATGCTTAGTTTTGTAT+TGG | - | chr5.1:22351684-22351703 | MS.gene046410:intron | 20.0% |
| !!! | AGGAATATCTTTTTATTTTG+AGG | - | chr5.1:22349804-22349823 | MS.gene046410:intron | 20.0% |
| !!! | AGTAAAAATTGGTTGTTTTA+GGG | + | chr5.1:22351809-22351828 | None:intergenic | 20.0% |
| ! | AAGAATTACAACAATTGGAA+AGG | - | chr5.1:22350852-22350871 | MS.gene046410:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr5.1:22350162-22350181 | None:intergenic | 25.0% |
| ! | ATATATATATAGGGTTATGC+TGG | + | chr5.1:22350318-22350337 | None:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr5.1:22349981-22350000 | MS.gene046410:CDS | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | chr5.1:22350000-22349981 | None:intergenic | 25.0% |
| ! | GAAGCTAATTTAGATATATG+TGG | + | chr5.1:22351763-22351782 | None:intergenic | 25.0% |
| ! | GTAAAGTTATACCTAAAAAG+TGG | - | chr5.1:22350257-22350276 | MS.gene046410:intron | 25.0% |
| ! | TATGAGAATGTGATTAATGA+AGG | - | chr5.1:22352109-22352128 | MS.gene046410:intron | 25.0% |
| ! | TCAAAAAAATCCAATCAAAC+GGG | - | chr5.1:22350391-22350410 | MS.gene046410:intron | 25.0% |
| !! | CTTCTAAAAACAAAGAACTT+AGG | + | chr5.1:22349759-22349778 | None:intergenic | 25.0% |
| !! | GAATATTTCTAACCTTTCTT+TGG | + | chr5.1:22351040-22351059 | None:intergenic | 25.0% |
| !! | GACGTCAATATAAACAATTT+TGG | + | chr5.1:22351506-22351525 | None:intergenic | 25.0% |
| !!! | AGATTTGTGAACAACTTTTT+TGG | + | chr5.1:22351466-22351485 | None:intergenic | 25.0% |
| !!! | CAGTAAAAATTGGTTGTTTT+AGG | + | chr5.1:22351810-22351829 | None:intergenic | 25.0% |
| !!! | GTGTTATTTTAGAAGATAGA+TGG | + | chr5.1:22351596-22351615 | None:intergenic | 25.0% |
| !!! | TGCTTATATTTTAAAACGGA+TGG | - | chr5.1:22350058-22350077 | MS.gene046410:intron | 25.0% |
| ATCTGAACTCTCATAATCTT+GGG | + | chr5.1:22352182-22352201 | None:intergenic | 30.0% | |
| CTAAAAGACACCTTCATAAA+AGG | + | chr5.1:22350107-22350126 | None:intergenic | 30.0% | |
| TATCTGAACTCTCATAATCT+TGG | + | chr5.1:22352183-22352202 | None:intergenic | 30.0% | |
| TCTAAAAAATGTTCCAAGGA+TGG | + | chr5.1:22351268-22351287 | None:intergenic | 30.0% | |
| TGTGGAAGAATTACAACAAT+TGG | - | chr5.1:22350847-22350866 | MS.gene046410:intron | 30.0% | |
| ! | CAATTTTTACTGAATCTGCA+GGG | - | chr5.1:22351818-22351837 | MS.gene046410:intron | 30.0% |
| ! | TTAGAAGACACCTTTTATGA+AGG | - | chr5.1:22350094-22350113 | MS.gene046410:intron | 30.0% |
| !! | ATCATACATGTTGCTTTAGT+CGG | + | chr5.1:22351868-22351887 | None:intergenic | 30.0% |
| !! | ATTTAATTTGCTAGAGTCGA+TGG | - | chr5.1:22351102-22351121 | MS.gene046410:intron | 30.0% |
| !! | CTTGTATATGATGGATCATA+AGG | - | chr5.1:22352045-22352064 | MS.gene046410:intron | 30.0% |
| !!! | AGACCTTGTTTTCTATTACA+CGG | + | chr5.1:22350898-22350917 | None:intergenic | 30.0% |
| !!! | ATCCTTGGAACATTTTTTAG+AGG | - | chr5.1:22351267-22351286 | MS.gene046410:CDS | 30.0% |
| !!! | TACTTATATTTTGACACGGA+GGG | + | chr5.1:22349943-22349962 | None:intergenic | 30.0% |
| !!! | TGTTTTAGGGATGAAAGTAA+GGG | + | chr5.1:22351796-22351815 | None:intergenic | 30.0% |
| !!! | TTACTTATATTTTGACACGG+AGG | + | chr5.1:22349944-22349963 | None:intergenic | 30.0% |
| !!! | TTGTTTTAGGGATGAAAGTA+AGG | + | chr5.1:22351797-22351816 | None:intergenic | 30.0% |
| !!! | TTTGTGAACAACTTTTTTGG+TGG | + | chr5.1:22351463-22351482 | None:intergenic | 30.0% |
| AAAATTCACACACACAAGTG+GGG | + | chr5.1:22351555-22351574 | None:intergenic | 35.0% | |
| ACATGATCGATGTCAACTTA+AGG | + | chr5.1:22350418-22350437 | None:intergenic | 35.0% | |
| AGATCTTGAAGGTTTGAATG+TGG | - | chr5.1:22350829-22350848 | MS.gene046410:intron | 35.0% | |
| ATGATTAACGACAGAATGGT+TGG | - | chr5.1:22352076-22352095 | MS.gene046410:intron | 35.0% | |
| CATGATCGATGTCAACTTAA+GGG | + | chr5.1:22350417-22350436 | None:intergenic | 35.0% | |
| CCTGCAGATTCAGTAAAAAT+TGG | + | chr5.1:22351820-22351839 | None:intergenic | 35.0% | |
| GAAAATTCACACACACAAGT+GGG | + | chr5.1:22351556-22351575 | None:intergenic | 35.0% | |
| GATCAATGATCTCCAAAGAA+AGG | - | chr5.1:22351025-22351044 | MS.gene046410:intron | 35.0% | |
| TCTGAACTCTCATAATCTTG+GGG | + | chr5.1:22352181-22352200 | None:intergenic | 35.0% | |
| TGAAAATTCACACACACAAG+TGG | + | chr5.1:22351557-22351576 | None:intergenic | 35.0% | |
| TGGAAAGGTCTCTTGAAATT+GGG | - | chr5.1:22350867-22350886 | MS.gene046410:intron | 35.0% | |
| TTGGAAAGGTCTCTTGAAAT+TGG | - | chr5.1:22350866-22350885 | MS.gene046410:intron | 35.0% | |
| ! | CCAATTTTTACTGAATCTGC+AGG | - | chr5.1:22351817-22351836 | MS.gene046410:intron | 35.0% |
| ! | GACCTCTAAAAAATGTTCCA+AGG | + | chr5.1:22351272-22351291 | None:intergenic | 35.0% |
| !! | GTGTGTTTGAGTTTTCTAGT+CGG | - | chr5.1:22351419-22351438 | MS.gene046410:intron | 35.0% |
| !! | TATGATGGATCATAAGGTTG+CGG | - | chr5.1:22352051-22352070 | MS.gene046410:intron | 35.0% |
| !!! | AGGTGTGATTTCCACTTTTT+AGG | + | chr5.1:22350271-22350290 | None:intergenic | 35.0% |
| AAAGTGGAAATCACACCTTG+AGG | - | chr5.1:22350273-22350292 | MS.gene046410:intron | 40.0% | |
| AAATTGTAAGGGTCCATCCT+TGG | - | chr5.1:22351252-22351271 | MS.gene046410:CDS | 40.0% | |
| AAGGTCTCTTGAAATTGGGT+TGG | - | chr5.1:22350871-22350890 | MS.gene046410:intron | 40.0% | |
| ACCAACGTTTACAACTCCAT+TGG | - | chr5.1:22352151-22352170 | MS.gene046410:intron | 40.0% | |
| ACCAATGGAGTTGTAAACGT+TGG | + | chr5.1:22352155-22352174 | None:intergenic | 40.0% | |
| AGGTCTCTTGAAATTGGGTT+GGG | - | chr5.1:22350872-22350891 | MS.gene046410:intron | 40.0% | |
| ATTAACGACAGAATGGTTGG+AGG | - | chr5.1:22352079-22352098 | MS.gene046410:intron | 40.0% | |
| CGCTTTCATGTACTATTTGC+AGG | - | chr5.1:22352361-22352380 | MS.gene046410:intron | 40.0% | |
| CTAAGAAGAGCCATCAACTA+AGG | - | chr5.1:22350792-22350811 | MS.gene046410:intron | 40.0% | |
| TCAGATACATCGCTCAAGTT+GGG | - | chr5.1:22352196-22352215 | MS.gene046410:intron | 40.0% | |
| TGTGTTATGATGAAGCGTGA+GGG | - | chr5.1:22350484-22350503 | MS.gene046410:intron | 40.0% | |
| TTCAGATACATCGCTCAAGT+TGG | - | chr5.1:22352195-22352214 | MS.gene046410:intron | 40.0% | |
| TTGTGTTATGATGAAGCGTG+AGG | - | chr5.1:22350483-22350502 | MS.gene046410:intron | 40.0% | |
| ! | TTTTACTGAATCTGCAGGGA+AGG | - | chr5.1:22351822-22351841 | MS.gene046410:intron | 40.0% |
| ! | TTTTAGCAAGCTACACCTCA+AGG | + | chr5.1:22350291-22350310 | None:intergenic | 40.0% |
| !! | ATGATGGATCATAAGGTTGC+GGG | - | chr5.1:22352052-22352071 | MS.gene046410:intron | 40.0% |
| !! | TAATTTGCTAGAGTCGATGG+AGG | - | chr5.1:22351105-22351124 | MS.gene046410:intron | 40.0% |
| AACTTAAGGGCCCGTTTGAT+TGG | + | chr5.1:22350404-22350423 | None:intergenic | 45.0% | |
| ATAATCTTGGGGAGGACCAA+TGG | + | chr5.1:22352170-22352189 | None:intergenic | 45.0% | |
| ATGAGGGGAGAAGATCTTGA+AGG | - | chr5.1:22350818-22350837 | MS.gene046410:intron | 45.0% | |
| CATCAACTAAGGCAGATGAG+GGG | - | chr5.1:22350803-22350822 | MS.gene046410:intron | 45.0% | |
| CCATCAACTAAGGCAGATGA+GGG | - | chr5.1:22350802-22350821 | MS.gene046410:intron | 45.0% | |
| GAACTCTCATAATCTTGGGG+AGG | + | chr5.1:22352178-22352197 | None:intergenic | 45.0% | |
| GGGATGAAAGTAAGGGTTGT+AGG | + | chr5.1:22351789-22351808 | None:intergenic | 45.0% | |
| GGGCATGATTAACGACAGAA+TGG | - | chr5.1:22352072-22352091 | MS.gene046410:intron | 45.0% | |
| GGGCCGTGTAATAGAAAACA+AGG | - | chr5.1:22350892-22350911 | MS.gene046410:intron | 45.0% | |
| TCAGGGAGAGAAGATCATGA+TGG | - | chr5.1:22351001-22351020 | MS.gene046410:intron | 45.0% | |
| ! | CAGATACATCGCTCAAGTTG+GGG | - | chr5.1:22352197-22352216 | MS.gene046410:intron | 45.0% |
| ! | CCAGTGTTCTAGATTGAGCA+AGG | - | chr5.1:22350763-22350782 | MS.gene046410:intron | 45.0% |
| ! | CCTTGCTCAATCTAGAACAC+TGG | + | chr5.1:22350766-22350785 | None:intergenic | 45.0% |
| !! | AACGTTGGTGACAGATTCTG+AGG | + | chr5.1:22352140-22352159 | None:intergenic | 45.0% |
| ACACACAAGTGGGGAATCTC+TGG | + | chr5.1:22351546-22351565 | None:intergenic | 50.0% | |
| ATTTGCAGGCTCCCATATGC+CGG | - | chr5.1:22352375-22352394 | MS.gene046410:intron | 50.0% | |
| CCAACCTGCAACTCAAGAGA+CGG | + | chr5.1:22350563-22350582 | None:intergenic | 50.0% | |
| CCCTCATCTGCCTTAGTTGA+TGG | + | chr5.1:22350805-22350824 | None:intergenic | 50.0% | |
| CTCAAAGAACCTCGCAAAGC+TGG | - | chr5.1:22350532-22350551 | MS.gene046410:intron | 50.0% | |
| GCCATCAACTAAGGCAGATG+AGG | - | chr5.1:22350801-22350820 | MS.gene046410:intron | 50.0% | |
| ! | AGAACCGTCTCTTGAGTTGC+AGG | - | chr5.1:22350556-22350575 | MS.gene046410:intron | 50.0% |
| ACGGTTCTTCCAGCTTTGCG+AGG | + | chr5.1:22350544-22350563 | None:intergenic | 55.0% | |
| TCTGCAGGGAAGGCAACTGA+TGG | - | chr5.1:22351832-22351851 | MS.gene046410:intron | 55.0% | |
| ! | CCGTCTCTTGAGTTGCAGGT+TGG | - | chr5.1:22350560-22350579 | MS.gene046410:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 22349692 | 22352401 | 22349692 | ID=MS.gene046410 |
| chr5.1 | mRNA | 22349692 | 22352401 | 22349692 | ID=MS.gene046410.t1;Parent=MS.gene046410 |
| chr5.1 | exon | 22352394 | 22352401 | 22352394 | ID=MS.gene046410.t1.exon1;Parent=MS.gene046410.t1 |
| chr5.1 | CDS | 22352394 | 22352401 | 22352394 | ID=cds.MS.gene046410.t1;Parent=MS.gene046410.t1 |
| chr5.1 | exon | 22351516 | 22351594 | 22351516 | ID=MS.gene046410.t1.exon2;Parent=MS.gene046410.t1 |
| chr5.1 | CDS | 22351516 | 22351594 | 22351516 | ID=cds.MS.gene046410.t1;Parent=MS.gene046410.t1 |
| chr5.1 | exon | 22351180 | 22351344 | 22351180 | ID=MS.gene046410.t1.exon3;Parent=MS.gene046410.t1 |
| chr5.1 | CDS | 22351180 | 22351344 | 22351180 | ID=cds.MS.gene046410.t1;Parent=MS.gene046410.t1 |
| chr5.1 | exon | 22351047 | 22351088 | 22351047 | ID=MS.gene046410.t1.exon4;Parent=MS.gene046410.t1 |
| chr5.1 | CDS | 22351047 | 22351088 | 22351047 | ID=cds.MS.gene046410.t1;Parent=MS.gene046410.t1 |
| chr5.1 | exon | 22350213 | 22350254 | 22350213 | ID=MS.gene046410.t1.exon5;Parent=MS.gene046410.t1 |
| chr5.1 | CDS | 22350213 | 22350254 | 22350213 | ID=cds.MS.gene046410.t1;Parent=MS.gene046410.t1 |
| chr5.1 | exon | 22349875 | 22350026 | 22349875 | ID=MS.gene046410.t1.exon6;Parent=MS.gene046410.t1 |
| chr5.1 | CDS | 22349875 | 22350026 | 22349875 | ID=cds.MS.gene046410.t1;Parent=MS.gene046410.t1 |
| chr5.1 | exon | 22349692 | 22349710 | 22349692 | ID=MS.gene046410.t1.exon7;Parent=MS.gene046410.t1 |
| chr5.1 | CDS | 22349692 | 22349710 | 22349692 | ID=cds.MS.gene046410.t1;Parent=MS.gene046410.t1 |
| Gene Sequence |
| Protein sequence |
