Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053927.t1 | XP_013442387.1 | 87.6 | 241 | 23 | 2 | 1 | 241 | 1 | 234 | 3.10E-108 | 401.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053927.t1 | P87242 | 46.9 | 194 | 94 | 4 | 57 | 242 | 6 | 198 | 4.9e-38 | 159.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053927.t1 | A0A072TGE2 | 87.6 | 241 | 23 | 2 | 1 | 241 | 1 | 234 | 2.2e-108 | 401.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053927 | MS.gene30964 | 0.831214 | 1.90E-55 | -1.69E-46 |
| MS.gene053927 | MS.gene31148 | 0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene053927 | MS.gene45498 | 0.826123 | 3.22E-54 | -1.69E-46 |
| MS.gene053927 | MS.gene70819 | 0.814614 | 1.41E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046441 | MS.gene053927 | PPI |
| MS.gene87886 | MS.gene053927 | PPI |
| MS.gene99675 | MS.gene053927 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053927.t1 | MTR_0194s0040 | 91.803 | 244 | 7 | 4 | 1 | 241 | 1 | 234 | 3.48e-158 | 438 |
| MS.gene053927.t1 | MTR_4g129850 | 66.851 | 181 | 58 | 1 | 56 | 234 | 36 | 216 | 3.16e-87 | 258 |
| MS.gene053927.t1 | MTR_4g129860 | 65.746 | 181 | 60 | 1 | 56 | 234 | 37 | 217 | 2.53e-84 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053927.t1 | AT1G26160 | 69.328 | 238 | 54 | 4 | 15 | 236 | 17 | 251 | 2.01e-112 | 323 |
| MS.gene053927.t1 | AT2G23820 | 70.286 | 175 | 52 | 0 | 61 | 235 | 80 | 254 | 2.75e-89 | 265 |
| MS.gene053927.t1 | AT1G26160 | 65.169 | 178 | 57 | 1 | 18 | 190 | 28 | 205 | 2.12e-78 | 235 |
| MS.gene053927.t1 | AT2G23820 | 69.620 | 158 | 48 | 0 | 61 | 218 | 80 | 237 | 1.22e-77 | 234 |
Find 60 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTCCAACCACAGTTCT+TGG | 0.247596 | 5.3:+42696820 | None:intergenic |
| TGAAAACAATTCTTCTTTAG+AGG | 0.265718 | 5.3:-42696799 | MS.gene053927:CDS |
| CTCATTGCTTCTGATATTCC+TGG | 0.268380 | 5.3:-42697721 | MS.gene053927:CDS |
| AACAAAATGTGCCAAGTTCT+TGG | 0.268598 | 5.3:-42696962 | MS.gene053927:CDS |
| AACCCATCCTTTCCTCTTTG+TGG | 0.273114 | 5.3:+42697807 | None:intergenic |
| GGGAAGTTCCAAACTGAAAT+AGG | 0.301671 | 5.3:-42695651 | MS.gene053927:CDS |
| ACAAGCACTGGAATATGAAA+TGG | 0.360466 | 5.3:-42695989 | MS.gene053927:CDS |
| TGGGTTAATCATGGGATTAA+AGG | 0.371640 | 5.3:-42697790 | MS.gene053927:CDS |
| CAACTACGCTCCTCTCGTTA+TGG | 0.382582 | 5.3:-42698006 | MS.gene053927:CDS |
| AAACTGAAATAGGTAAAAGT+TGG | 0.421614 | 5.3:-42695641 | MS.gene053927:CDS |
| TTATACTCAATAGCTATTGT+AGG | 0.435237 | 5.3:-42697049 | MS.gene053927:intron |
| GGGTTAATCATGGGATTAAA+GGG | 0.440585 | 5.3:-42697789 | MS.gene053927:CDS |
| TTAAAGCTTCCTGCTCCATT+CGG | 0.449281 | 5.3:+42696984 | None:intergenic |
| ATCGATAGCAGAGGAGGAGG+AGG | 0.464901 | 5.3:+42697947 | None:intergenic |
| AGGAAAGGATGGGTTAATCA+TGG | 0.468444 | 5.3:-42697799 | MS.gene053927:CDS |
| TCATCCCTCCACCAAGAACT+TGG | 0.474015 | 5.3:+42696951 | None:intergenic |
| TCAAAGCCATACGGTACATA+TGG | 0.474924 | 5.3:+42697749 | None:intergenic |
| AACTGAAATAGGTAAAAGTT+GGG | 0.477183 | 5.3:-42695640 | MS.gene053927:CDS |
| AGAGGAGGAGGAGGTGTGAG+AGG | 0.479718 | 5.3:+42697956 | None:intergenic |
| TGAAATGATTCTACAAGCAC+TGG | 0.492894 | 5.3:-42696001 | MS.gene053927:CDS |
| TGAAAAGAGCCGAATGGAGC+AGG | 0.493928 | 5.3:-42696993 | MS.gene053927:CDS |
| CAAGCACTGGAATATGAAAT+GGG | 0.501459 | 5.3:-42695988 | MS.gene053927:intron |
| ACATACCTTCTGCAATATCA+TGG | 0.513774 | 5.3:+42697572 | None:intergenic |
| ATGTGCCAAGTTCTTGGTGG+AGG | 0.521274 | 5.3:-42696956 | MS.gene053927:CDS |
| TGCAGAGCATGGAAAAGTAC+TGG | 0.522727 | 5.3:-42695786 | MS.gene053927:intron |
| TTAATAATTACGCAAGCAGT+CGG | 0.524958 | 5.3:-42698103 | MS.gene053927:CDS |
| AAAATCGATAGCAGAGGAGG+AGG | 0.525616 | 5.3:+42697944 | None:intergenic |
| TTCCTGGATTGAGTAGAGAA+AGG | 0.531245 | 5.3:-42697705 | MS.gene053927:intron |
| ACCATCTGATGGTGTGCCTA+AGG | 0.532689 | 5.3:-42697017 | MS.gene053927:CDS |
| GAGAGCATACCTTGAGAGTG+TGG | 0.537102 | 5.3:+42697910 | None:intergenic |
| GAGAAAATCGATAGCAGAGG+AGG | 0.543157 | 5.3:+42697941 | None:intergenic |
| ACGGTACATATGGTCAGCTA+TGG | 0.543472 | 5.3:+42697759 | None:intergenic |
| TAACGAGAGGAGCGTAGTTG+CGG | 0.548111 | 5.3:+42698009 | None:intergenic |
| AACCTTTCTCTACTCAATCC+AGG | 0.548626 | 5.3:+42697703 | None:intergenic |
| GGAAAGGATGGGTTAATCAT+GGG | 0.554187 | 5.3:-42697798 | MS.gene053927:CDS |
| CGAGATCCAAGAACTGTGGT+TGG | 0.572991 | 5.3:-42696826 | MS.gene053927:CDS |
| AAAATGTGCCAAGTTCTTGG+TGG | 0.580446 | 5.3:-42696959 | MS.gene053927:CDS |
| AGCTGACCATATGTACCGTA+TGG | 0.583476 | 5.3:-42697755 | MS.gene053927:CDS |
| TAGTTGCGGAGAACAACAAA+GGG | 0.585261 | 5.3:+42698023 | None:intergenic |
| CACTCTCTGCCACACTCTCA+AGG | 0.588274 | 5.3:-42697919 | MS.gene053927:intron |
| GTTCTTGGTGGAGGGATGAG+AGG | 0.593011 | 5.3:-42696947 | MS.gene053927:intron |
| CTCGTCCATGATATTGCAGA+AGG | 0.594054 | 5.3:-42697577 | MS.gene053927:intron |
| AGACCACAAAGAGGAAAGGA+TGG | 0.598959 | 5.3:-42697810 | MS.gene053927:CDS |
| GAGGAGGAGGAGGTGTGAGA+GGG | 0.608235 | 5.3:+42697957 | None:intergenic |
| CACCACTGCATCATCATCAA+CGG | 0.612278 | 5.3:-42698070 | MS.gene053927:CDS |
| GTGTAGACCACAAAGAGGAA+AGG | 0.612615 | 5.3:-42697814 | MS.gene053927:intron |
| GTAGTTGCGGAGAACAACAA+AGG | 0.625952 | 5.3:+42698022 | None:intergenic |
| GCCTTAGGCACACCATCAGA+TGG | 0.628508 | 5.3:+42697016 | None:intergenic |
| AGTGAGAAAATCGATAGCAG+AGG | 0.638772 | 5.3:+42697938 | None:intergenic |
| CGCCGTTGATGATGATGCAG+TGG | 0.639668 | 5.3:+42698068 | None:intergenic |
| TAAGGCTGAAAAGAGCCGAA+TGG | 0.640673 | 5.3:-42696999 | MS.gene053927:CDS |
| GGAGATATAACACCATCTGA+TGG | 0.641949 | 5.3:-42697028 | MS.gene053927:CDS |
| GACCACAAAGAGGAAAGGAT+GGG | 0.643435 | 5.3:-42697809 | MS.gene053927:CDS |
| TGAGTGACATCAAAGCCATA+CGG | 0.663318 | 5.3:+42697740 | None:intergenic |
| GGTTAATCATGGGATTAAAG+GGG | 0.672063 | 5.3:-42697788 | MS.gene053927:CDS |
| TGTGCCAAGTTCTTGGTGGA+GGG | 0.685831 | 5.3:-42696955 | MS.gene053927:CDS |
| GTATTGTGTAGACCACAAAG+AGG | 0.700403 | 5.3:-42697819 | MS.gene053927:intron |
| TGTGAACGAACCATAACGAG+AGG | 0.701189 | 5.3:+42697996 | None:intergenic |
| CACTGCATCATCATCAACGG+CGG | 0.717600 | 5.3:-42698067 | MS.gene053927:CDS |
| CTGACGAGATCCAAGAACTG+TGG | 0.718541 | 5.3:-42696830 | MS.gene053927:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTGTTTTGTATACA+GGG | - | chr5.3:42698026-42698045 | MS.gene053927:CDS | 15.0% |
| !!! | CAAATCAGAATATATTTTTA+TGG | - | chr5.3:42697528-42697547 | MS.gene053927:intron | 15.0% |
| !!! | TAATTTTTTGTTTTGTATAC+AGG | - | chr5.3:42698025-42698044 | MS.gene053927:CDS | 15.0% |
| !!! | TATTTTTTAGCATTACAAAA+TGG | + | chr5.3:42697870-42697889 | None:intergenic | 15.0% |
| !! | AAAAATTATGTGATTGACTA+AGG | + | chr5.3:42698013-42698032 | None:intergenic | 20.0% |
| !! | CAATAAAGATAAAAGGAATT+TGG | - | chr5.3:42696563-42696582 | MS.gene053927:intron | 20.0% |
| !! | TAGATCTGTAATATGAAAAT+TGG | - | chr5.3:42697631-42697650 | MS.gene053927:intron | 20.0% |
| !!! | AATTTGGAACATTAAAAACT+TGG | - | chr5.3:42697132-42697151 | MS.gene053927:intron | 20.0% |
| !!! | GAGAAATTTTTGCTTATAAT+AGG | + | chr5.3:42696313-42696332 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAGATAATATGA+AGG | - | chr5.3:42697157-42697176 | MS.gene053927:intron | 20.0% |
| !!! | TTTTCTTCTTGAAATGATTT+CGG | + | chr5.3:42698086-42698105 | None:intergenic | 20.0% |
| ! | AAACTGAAATAGGTAAAAGT+TGG | - | chr5.3:42698056-42698075 | MS.gene053927:CDS | 25.0% |
| ! | AAATGTAATGTAATGCAATC+AGG | + | chr5.3:42696259-42696278 | None:intergenic | 25.0% |
| ! | AACTGAAATAGGTAAAAGTT+GGG | - | chr5.3:42698057-42698076 | MS.gene053927:CDS | 25.0% |
| ! | ACATTCAATTCAATCAGATA+AGG | + | chr5.3:42695843-42695862 | None:intergenic | 25.0% |
| ! | AGGTCTACAATAAAGATAAA+AGG | - | chr5.3:42696556-42696575 | MS.gene053927:intron | 25.0% |
| ! | ATGAATCTGAAAAAAGAGAT+TGG | - | chr5.3:42696394-42696413 | MS.gene053927:intron | 25.0% |
| ! | CATTCAATTCAATCAGATAA+GGG | + | chr5.3:42695842-42695861 | None:intergenic | 25.0% |
| ! | CTTTCGTAATATGAATTCAA+AGG | + | chr5.3:42697772-42697791 | None:intergenic | 25.0% |
| ! | TACAAGTTATAAACACTATC+CGG | + | chr5.3:42696421-42696440 | None:intergenic | 25.0% |
| ! | TGAAAACAATTCTTCTTTAG+AGG | - | chr5.3:42696898-42696917 | MS.gene053927:intron | 25.0% |
| ! | TTATACTCAATAGCTATTGT+AGG | - | chr5.3:42696648-42696667 | MS.gene053927:intron | 25.0% |
| !! | AACTTTTACCTATTTCAGTT+TGG | + | chr5.3:42698057-42698076 | None:intergenic | 25.0% |
| !! | ATCTAAAGATGCATTTTAAG+AGG | + | chr5.3:42697616-42697635 | None:intergenic | 25.0% |
| !! | TGACTAAATGATTGATTCTA+GGG | + | chr5.3:42697303-42697322 | None:intergenic | 25.0% |
| !! | TTTGTCACTAAATTTTGCTT+TGG | + | chr5.3:42696447-42696466 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTTTAAGTTCCGT+CGG | - | chr5.3:42696786-42696805 | MS.gene053927:CDS | 25.0% |
| !!! | TCTAAAGATGCATTTTAAGA+GGG | + | chr5.3:42697615-42697634 | None:intergenic | 25.0% |
| !!! | TGTTGTTAAAGATTTTGACA+AGG | - | chr5.3:42696925-42696944 | MS.gene053927:intron | 25.0% |
| !!! | TTTGAGATGACATTCTTTTT+TGG | - | chr5.3:42696835-42696854 | MS.gene053927:intron | 25.0% |
| AACAGAGAAAGGATTAATGA+AGG | + | chr5.3:42697006-42697025 | None:intergenic | 30.0% | |
| AATTTACTTTGAGTCCAAGA+TGG | + | chr5.3:42697031-42697050 | None:intergenic | 30.0% | |
| ACATAAAAGAAAGCAAGCAT+GGG | + | chr5.3:42697333-42697352 | None:intergenic | 30.0% | |
| AGATAAAAGGAATTTGGCTA+AGG | - | chr5.3:42696569-42696588 | MS.gene053927:intron | 30.0% | |
| ATGATAACTAATGCTACAAG+AGG | + | chr5.3:42697066-42697085 | None:intergenic | 30.0% | |
| CAATAGGGATTCATGTTTAA+TGG | - | chr5.3:42697358-42697377 | MS.gene053927:intron | 30.0% | |
| CATTAAACATGAATCCCTAT+TGG | + | chr5.3:42697360-42697379 | None:intergenic | 30.0% | |
| GAAAAAAATGATGATACGCA+TGG | + | chr5.3:42697490-42697509 | None:intergenic | 30.0% | |
| GAAATGCATGAATCCTTATT+TGG | - | chr5.3:42697986-42698005 | MS.gene053927:CDS | 30.0% | |
| GTAGTATAAACCAGATACAT+TGG | - | chr5.3:42696364-42696383 | MS.gene053927:intron | 30.0% | |
| TGATAACTAATGCTACAAGA+GGG | + | chr5.3:42697065-42697084 | None:intergenic | 30.0% | |
| TTAATAATTACGCAAGCAGT+CGG | - | chr5.3:42695594-42695613 | MS.gene053927:CDS | 30.0% | |
| TTCTCAGATTCATTGAATGA+CGG | - | chr5.3:42696328-42696347 | MS.gene053927:intron | 30.0% | |
| TTGATGAGTTCAACAGTTAA+AGG | + | chr5.3:42697807-42697826 | None:intergenic | 30.0% | |
| TTTATTGTAGACCTATACAC+CGG | + | chr5.3:42696550-42696569 | None:intergenic | 30.0% | |
| ! | CTACGATAATAGATTTTCGT+TGG | + | chr5.3:42697102-42697121 | None:intergenic | 30.0% |
| ! | GAATTTTTCATTTCAACTGC+AGG | - | chr5.3:42697936-42697955 | MS.gene053927:CDS | 30.0% |
| ! | GTGACTAAATGATTGATTCT+AGG | + | chr5.3:42697304-42697323 | None:intergenic | 30.0% |
| ! | TCGTAGATGTATCTGAAATT+TGG | - | chr5.3:42697116-42697135 | MS.gene053927:intron | 30.0% |
| ! | TCTTTTATGTGTAGCCAATA+GGG | - | chr5.3:42697343-42697362 | MS.gene053927:intron | 30.0% |
| ! | TTCTTTTATGTGTAGCCAAT+AGG | - | chr5.3:42697342-42697361 | MS.gene053927:intron | 30.0% |
| !!! | CTAATTGCATTGTTTTGATC+AGG | - | chr5.3:42697672-42697691 | MS.gene053927:intron | 30.0% |
| AAAATGATGATACGCATGGA+AGG | + | chr5.3:42697486-42697505 | None:intergenic | 35.0% | |
| AAATGATGATACGCATGGAA+GGG | + | chr5.3:42697485-42697504 | None:intergenic | 35.0% | |
| AACAAAATGTGCCAAGTTCT+TGG | - | chr5.3:42696735-42696754 | MS.gene053927:intron | 35.0% | |
| ACATACCTTCTGCAATATCA+TGG | + | chr5.3:42696128-42696147 | None:intergenic | 35.0% | |
| CAAGGCAGTAATTAGGAAAA+TGG | - | chr5.3:42697222-42697241 | MS.gene053927:intron | 35.0% | |
| CACATAAAAGAAAGCAAGCA+TGG | + | chr5.3:42697334-42697353 | None:intergenic | 35.0% | |
| CATCGAATAACCAATGTATC+TGG | + | chr5.3:42696377-42696396 | None:intergenic | 35.0% | |
| GATTGACTAAGGTCCAAATA+AGG | + | chr5.3:42698002-42698021 | None:intergenic | 35.0% | |
| GGGTTAATCATGGGATTAAA+GGG | - | chr5.3:42695908-42695927 | MS.gene053927:intron | 35.0% | |
| GGTTAATCATGGGATTAAAG+GGG | - | chr5.3:42695909-42695928 | MS.gene053927:intron | 35.0% | |
| TATGAAAATTGGAGACCTTC+TGG | - | chr5.3:42697642-42697661 | MS.gene053927:intron | 35.0% | |
| TCAATCAGATAAGGGATGAA+TGG | + | chr5.3:42695834-42695853 | None:intergenic | 35.0% | |
| TCTGAAAAAAGAGATTGGAC+CGG | - | chr5.3:42696399-42696418 | MS.gene053927:intron | 35.0% | |
| TGAAATGATTCTACAAGCAC+TGG | - | chr5.3:42697696-42697715 | MS.gene053927:intron | 35.0% | |
| TGGGTTAATCATGGGATTAA+AGG | - | chr5.3:42695907-42695926 | MS.gene053927:intron | 35.0% | |
| ! | CATTGACAAGCTTTTATTGC+TGG | + | chr5.3:42697426-42697445 | None:intergenic | 35.0% |
| ! | GATTGATTCTAGGGAAGTTT+AGG | + | chr5.3:42697294-42697313 | None:intergenic | 35.0% |
| ! | TTTTCCTAATTACTGCCTTG+AGG | + | chr5.3:42697222-42697241 | None:intergenic | 35.0% |
| !! | ACAAGCACTGGAATATGAAA+TGG | - | chr5.3:42697708-42697727 | MS.gene053927:CDS | 35.0% |
| !! | CAAGCACTGGAATATGAAAT+GGG | - | chr5.3:42697709-42697728 | MS.gene053927:CDS | 35.0% |
| !!! | ACTCAACACATTGCTTTTTC+CGG | - | chr5.3:42696528-42696547 | MS.gene053927:intron | 35.0% |
| AAAATGTGCCAAGTTCTTGG+TGG | - | chr5.3:42696738-42696757 | MS.gene053927:intron | 40.0% | |
| AACCTTTCTCTACTCAATCC+AGG | + | chr5.3:42695997-42696016 | None:intergenic | 40.0% | |
| AGAAAGCAAGCATGGGAAAA+CGG | + | chr5.3:42697326-42697345 | None:intergenic | 40.0% | |
| AGACAACTAAGCAACAGTTC+AGG | + | chr5.3:42696495-42696514 | None:intergenic | 40.0% | |
| AGTGAGAAAATCGATAGCAG+AGG | + | chr5.3:42695762-42695781 | None:intergenic | 40.0% | |
| ATCCATCTGCATTACGTACT+AGG | + | chr5.3:42696964-42696983 | None:intergenic | 40.0% | |
| ATTGTACATTGTGCAGAGCA+TGG | - | chr5.3:42697900-42697919 | MS.gene053927:intron | 40.0% | |
| CACAGCACAGAAAAAAGCAA+GGG | + | chr5.3:42696081-42696100 | None:intergenic | 40.0% | |
| CCAAACAGTCTTCATGTTGA+GGG | - | chr5.3:42697453-42697472 | MS.gene053927:intron | 40.0% | |
| CCAAGATGGTAAACAGAGAA+AGG | + | chr5.3:42697017-42697036 | None:intergenic | 40.0% | |
| CCTCAACATGAAGACTGTTT+GGG | + | chr5.3:42697455-42697474 | None:intergenic | 40.0% | |
| CCTTTCTCTGTTTACCATCT+TGG | - | chr5.3:42697014-42697033 | MS.gene053927:CDS | 40.0% | |
| CTCATTGCTTCTGATATTCC+TGG | - | chr5.3:42695976-42695995 | MS.gene053927:intron | 40.0% | |
| GCAATTAGAAAGCAACCAGA+AGG | + | chr5.3:42697660-42697679 | None:intergenic | 40.0% | |
| GCTTATAATAGGTGACGAGA+GGG | + | chr5.3:42696302-42696321 | None:intergenic | 40.0% | |
| GGAGATATAACACCATCTGA+TGG | - | chr5.3:42696669-42696688 | MS.gene053927:intron | 40.0% | |
| GGGAAGTTCCAAACTGAAAT+AGG | - | chr5.3:42698046-42698065 | MS.gene053927:CDS | 40.0% | |
| GTATTGTGTAGACCACAAAG+AGG | - | chr5.3:42695878-42695897 | MS.gene053927:intron | 40.0% | |
| TACCTAGTACGTAATGCAGA+TGG | - | chr5.3:42696959-42696978 | MS.gene053927:CDS | 40.0% | |
| TAGTTGCGGAGAACAACAAA+GGG | + | chr5.3:42695677-42695696 | None:intergenic | 40.0% | |
| TCAAAGCCATACGGTACATA+TGG | + | chr5.3:42695951-42695970 | None:intergenic | 40.0% | |
| TCAGTACTATCACCTCTGAA+AGG | - | chr5.3:42697188-42697207 | MS.gene053927:intron | 40.0% | |
| TGAGTGACATCAAAGCCATA+CGG | + | chr5.3:42695960-42695979 | None:intergenic | 40.0% | |
| TGCTTATAATAGGTGACGAG+AGG | + | chr5.3:42696303-42696322 | None:intergenic | 40.0% | |
| TTAAAGCTTCCTGCTCCATT+CGG | + | chr5.3:42696716-42696735 | None:intergenic | 40.0% | |
| TTCCTGGATTGAGTAGAGAA+AGG | - | chr5.3:42695992-42696011 | MS.gene053927:CDS | 40.0% | |
| ! | AACGATTATCAAAGCACTCG+AGG | + | chr5.3:42696229-42696248 | None:intergenic | 40.0% |
| ! | ATTATCAAAGCACTCGAGGT+AGG | + | chr5.3:42696225-42696244 | None:intergenic | 40.0% |
| !! | AGGAAAGGATGGGTTAATCA+TGG | - | chr5.3:42695898-42695917 | MS.gene053927:intron | 40.0% |
| !! | GGAAAGGATGGGTTAATCAT+GGG | - | chr5.3:42695899-42695918 | MS.gene053927:intron | 40.0% |
| !!! | CATTGCTTTTTCCGGTGTAT+AGG | - | chr5.3:42696536-42696555 | MS.gene053927:intron | 40.0% |
| AAAATCGATAGCAGAGGAGG+AGG | + | chr5.3:42695756-42695775 | None:intergenic | 45.0% | |
| AACCCATCCTTTCCTCTTTG+TGG | + | chr5.3:42695893-42695912 | None:intergenic | 45.0% | |
| ACGGTACATATGGTCAGCTA+TGG | + | chr5.3:42695941-42695960 | None:intergenic | 45.0% | |
| AGACCACAAAGAGGAAAGGA+TGG | - | chr5.3:42695887-42695906 | MS.gene053927:intron | 45.0% | |
| AGCTGACCATATGTACCGTA+TGG | - | chr5.3:42695942-42695961 | MS.gene053927:intron | 45.0% | |
| CACCACTGCATCATCATCAA+CGG | - | chr5.3:42695627-42695646 | MS.gene053927:CDS | 45.0% | |
| CATACTCCAACCACAGTTCT+TGG | + | chr5.3:42696880-42696899 | None:intergenic | 45.0% | |
| CCCAAACAGTCTTCATGTTG+AGG | - | chr5.3:42697452-42697471 | MS.gene053927:intron | 45.0% | |
| CCCTCAACATGAAGACTGTT+TGG | + | chr5.3:42697456-42697475 | None:intergenic | 45.0% | |
| CTAATTACTGCCTTGAGGAC+AGG | + | chr5.3:42697217-42697236 | None:intergenic | 45.0% | |
| CTCGTCCATGATATTGCAGA+AGG | - | chr5.3:42696120-42696139 | MS.gene053927:intron | 45.0% | |
| CTCTTCCAAAGTGACGTTGT+TGG | - | chr5.3:42697260-42697279 | MS.gene053927:intron | 45.0% | |
| CTGTCCTCAAGGCAGTAATT+AGG | - | chr5.3:42697215-42697234 | MS.gene053927:intron | 45.0% | |
| GACCACAAAGAGGAAAGGAT+GGG | - | chr5.3:42695888-42695907 | MS.gene053927:intron | 45.0% | |
| GAGAAAATCGATAGCAGAGG+AGG | + | chr5.3:42695759-42695778 | None:intergenic | 45.0% | |
| GCACAGCACAGAAAAAAGCA+AGG | + | chr5.3:42696082-42696101 | None:intergenic | 45.0% | |
| GCCAAATTTCAAAGCTCCGA+CGG | + | chr5.3:42696805-42696824 | None:intergenic | 45.0% | |
| GTAGTTGCGGAGAACAACAA+AGG | + | chr5.3:42695678-42695697 | None:intergenic | 45.0% | |
| GTGTAGACCACAAAGAGGAA+AGG | - | chr5.3:42695883-42695902 | MS.gene053927:intron | 45.0% | |
| TAAGGCTGAAAAGAGCCGAA+TGG | - | chr5.3:42696698-42696717 | MS.gene053927:intron | 45.0% | |
| TGGAAGAGGAAAGTAGCACT+GGG | + | chr5.3:42697248-42697267 | None:intergenic | 45.0% | |
| TGTGAACGAACCATAACGAG+AGG | + | chr5.3:42695704-42695723 | None:intergenic | 45.0% | |
| TTGGAAGAGGAAAGTAGCAC+TGG | + | chr5.3:42697249-42697268 | None:intergenic | 45.0% | |
| ! | ATTCGGCTCTTTTCAGCCTT+AGG | + | chr5.3:42696699-42696718 | None:intergenic | 45.0% |
| ! | CAACAACGTCACTTTGGAAG+AGG | + | chr5.3:42697262-42697281 | None:intergenic | 45.0% |
| ! | TGCAGAGCATGGAAAAGTAC+TGG | - | chr5.3:42697911-42697930 | MS.gene053927:intron | 45.0% |
| !! | TCCGTCGGAGCTTTGAAATT+TGG | - | chr5.3:42696801-42696820 | MS.gene053927:CDS | 45.0% |
| ATGTGCCAAGTTCTTGGTGG+AGG | - | chr5.3:42696741-42696760 | MS.gene053927:intron | 50.0% | |
| CAACTACGCTCCTCTCGTTA+TGG | - | chr5.3:42695691-42695710 | MS.gene053927:intron | 50.0% | |
| CACTGCATCATCATCAACGG+CGG | - | chr5.3:42695630-42695649 | MS.gene053927:CDS | 50.0% | |
| CGAGATCCAAGAACTGTGGT+TGG | - | chr5.3:42696871-42696890 | MS.gene053927:intron | 50.0% | |
| CGATGTTTCGCGGTTGAAGA+AGG | + | chr5.3:42697394-42697413 | None:intergenic | 50.0% | |
| CTGACGAGATCCAAGAACTG+TGG | - | chr5.3:42696867-42696886 | MS.gene053927:intron | 50.0% | |
| GACAGAGCTACGATGTTTCG+CGG | + | chr5.3:42697404-42697423 | None:intergenic | 50.0% | |
| GCGCAATTGAGTGAGTGAGA+GGG | + | chr5.3:42696159-42696178 | None:intergenic | 50.0% | |
| TCATCCCTCCACCAAGAACT+TGG | + | chr5.3:42696749-42696768 | None:intergenic | 50.0% | |
| TCCAAAGTGACGTTGTTGGC+TGG | - | chr5.3:42697264-42697283 | MS.gene053927:intron | 50.0% | |
| TGAAAAGAGCCGAATGGAGC+AGG | - | chr5.3:42696704-42696723 | MS.gene053927:intron | 50.0% | |
| TGTGCCAAGTTCTTGGTGGA+GGG | - | chr5.3:42696742-42696761 | MS.gene053927:intron | 50.0% | |
| ! | ACCATCTGATGGTGTGCCTA+AGG | - | chr5.3:42696680-42696699 | MS.gene053927:intron | 50.0% |
| ! | GAGAGCATACCTTGAGAGTG+TGG | + | chr5.3:42695790-42695809 | None:intergenic | 50.0% |
| ! | TAACGAGAGGAGCGTAGTTG+CGG | + | chr5.3:42695691-42695710 | None:intergenic | 50.0% |
| !! | TGAAAGGTGTCCTGTCCTCA+AGG | - | chr5.3:42697204-42697223 | MS.gene053927:intron | 50.0% |
| ATCGATAGCAGAGGAGGAGG+AGG | + | chr5.3:42695753-42695772 | None:intergenic | 55.0% | |
| CACTCTCTGCCACACTCTCA+AGG | - | chr5.3:42695778-42695797 | MS.gene053927:CDS | 55.0% | |
| CGCGCAATTGAGTGAGTGAG+AGG | + | chr5.3:42696160-42696179 | None:intergenic | 55.0% | |
| GAGGACAGGACACCTTTCAG+AGG | + | chr5.3:42697203-42697222 | None:intergenic | 55.0% | |
| GCCAGCCAACAACGTCACTT+TGG | + | chr5.3:42697268-42697287 | None:intergenic | 55.0% | |
| GCCTTAGGCACACCATCAGA+TGG | + | chr5.3:42696684-42696703 | None:intergenic | 55.0% | |
| GTTCTTGGTGGAGGGATGAG+AGG | - | chr5.3:42696750-42696769 | MS.gene053927:intron | 55.0% | |
| !! | CGCCGTTGATGATGATGCAG+TGG | + | chr5.3:42695632-42695651 | None:intergenic | 55.0% |
| ! | AGAGGAGGAGGAGGTGTGAG+AGG | + | chr5.3:42695744-42695763 | None:intergenic | 60.0% |
| ! | GAGGAGGAGGAGGTGTGAGA+GGG | + | chr5.3:42695743-42695762 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 42695587 | 42698132 | 42695587 | ID=MS.gene053927 |
| chr5.3 | mRNA | 42695587 | 42698132 | 42695587 | ID=MS.gene053927.t1;Parent=MS.gene053927 |
| chr5.3 | exon | 42697920 | 42698132 | 42697920 | ID=MS.gene053927.t1.exon1;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42697920 | 42698132 | 42697920 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| chr5.3 | exon | 42697706 | 42697830 | 42697706 | ID=MS.gene053927.t1.exon2;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42697706 | 42697830 | 42697706 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| chr5.3 | exon | 42697578 | 42697615 | 42697578 | ID=MS.gene053927.t1.exon3;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42697578 | 42697615 | 42697578 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| chr5.3 | exon | 42696948 | 42697058 | 42696948 | ID=MS.gene053927.t1.exon4;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42696948 | 42697058 | 42696948 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| chr5.3 | exon | 42696773 | 42696852 | 42696773 | ID=MS.gene053927.t1.exon5;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42696773 | 42696852 | 42696773 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| chr5.3 | exon | 42695989 | 42696025 | 42695989 | ID=MS.gene053927.t1.exon6;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42695989 | 42696025 | 42695989 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| chr5.3 | exon | 42695762 | 42695803 | 42695762 | ID=MS.gene053927.t1.exon7;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42695762 | 42695803 | 42695762 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| chr5.3 | exon | 42695587 | 42695672 | 42695587 | ID=MS.gene053927.t1.exon8;Parent=MS.gene053927.t1 |
| chr5.3 | CDS | 42695587 | 42695672 | 42695587 | ID=cds.MS.gene053927.t1;Parent=MS.gene053927.t1 |
| Gene Sequence |
| Protein sequence |
