Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046813.t1 | XP_013466364.1 | 96.3 | 190 | 3 | 1 | 1 | 186 | 1 | 190 | 5.80E-99 | 370.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046813.t1 | Q9FGM1 | 77.5 | 182 | 39 | 1 | 2 | 181 | 4 | 185 | 9.7e-79 | 294.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046813.t1 | A0A072VQL7 | 96.3 | 190 | 3 | 1 | 1 | 186 | 1 | 190 | 4.2e-99 | 370.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene86009 | MS.gene046813 | PPI |
MS.gene95282 | MS.gene046813 | PPI |
MS.gene79764 | MS.gene046813 | PPI |
MS.gene59569 | MS.gene046813 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046813.t1 | MTR_1g028380 | 96.316 | 190 | 3 | 1 | 1 | 186 | 1 | 190 | 9.03e-135 | 375 |
MS.gene046813.t1 | MTR_3g090980 | 87.302 | 189 | 21 | 1 | 1 | 186 | 4 | 192 | 2.00e-122 | 343 |
MS.gene046813.t1 | MTR_8g027805 | 74.302 | 179 | 46 | 0 | 6 | 184 | 9 | 187 | 7.24e-102 | 291 |
MS.gene046813.t1 | MTR_3g071740 | 51.163 | 172 | 79 | 4 | 12 | 181 | 63 | 231 | 2.91e-58 | 182 |
MS.gene046813.t1 | MTR_7g070050 | 56.213 | 169 | 68 | 3 | 13 | 175 | 11 | 179 | 4.29e-56 | 175 |
MS.gene046813.t1 | MTR_5g083270 | 51.515 | 165 | 74 | 3 | 13 | 174 | 44 | 205 | 9.70e-56 | 175 |
MS.gene046813.t1 | MTR_4g014460 | 49.689 | 161 | 80 | 1 | 15 | 174 | 49 | 209 | 5.10e-54 | 171 |
MS.gene046813.t1 | MTR_1g016480 | 49.367 | 158 | 79 | 1 | 15 | 171 | 39 | 196 | 3.59e-52 | 166 |
MS.gene046813.t1 | MTR_5g030500 | 49.398 | 166 | 77 | 3 | 14 | 173 | 43 | 207 | 3.32e-49 | 159 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046813.t1 | AT5G53160 | 77.473 | 182 | 39 | 1 | 2 | 181 | 4 | 185 | 2.61e-104 | 298 |
MS.gene046813.t1 | AT1G01360 | 72.376 | 181 | 49 | 1 | 2 | 181 | 7 | 187 | 2.35e-96 | 277 |
MS.gene046813.t1 | AT4G27920 | 66.304 | 184 | 60 | 2 | 1 | 183 | 1 | 183 | 5.55e-90 | 261 |
MS.gene046813.t1 | AT4G01026 | 70.760 | 171 | 50 | 0 | 13 | 183 | 21 | 191 | 1.02e-87 | 256 |
MS.gene046813.t1 | AT5G53160 | 75.439 | 114 | 26 | 1 | 2 | 113 | 4 | 117 | 4.73e-59 | 182 |
MS.gene046813.t1 | AT2G38310 | 53.293 | 167 | 73 | 2 | 17 | 181 | 41 | 204 | 1.59e-54 | 172 |
MS.gene046813.t1 | AT2G40330 | 48.503 | 167 | 82 | 2 | 13 | 175 | 46 | 212 | 1.47e-53 | 170 |
MS.gene046813.t1 | AT5G05440 | 51.899 | 158 | 71 | 3 | 13 | 168 | 43 | 197 | 1.94e-53 | 169 |
MS.gene046813.t1 | AT2G26040 | 47.619 | 168 | 83 | 3 | 15 | 178 | 22 | 188 | 1.06e-51 | 164 |
MS.gene046813.t1 | AT4G17870 | 49.693 | 163 | 80 | 1 | 15 | 175 | 17 | 179 | 4.28e-49 | 158 |
MS.gene046813.t1 | AT1G73000 | 41.573 | 178 | 92 | 3 | 7 | 173 | 30 | 206 | 3.47e-44 | 146 |
MS.gene046813.t1 | AT5G45870 | 50.676 | 148 | 70 | 2 | 28 | 174 | 10 | 155 | 1.14e-39 | 132 |
MS.gene046813.t1 | AT5G45860 | 49.091 | 165 | 75 | 3 | 12 | 175 | 1 | 157 | 1.25e-39 | 132 |
MS.gene046813.t1 | AT5G46790 | 47.273 | 165 | 82 | 2 | 15 | 174 | 44 | 208 | 1.69e-39 | 134 |
MS.gene046813.t1 | AT5G46790 | 47.273 | 165 | 82 | 2 | 15 | 174 | 44 | 208 | 1.69e-39 | 134 |
MS.gene046813.t1 | AT4G18620 | 42.857 | 161 | 85 | 1 | 21 | 174 | 2 | 162 | 3.35e-35 | 121 |
Find 50 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCCTTCCATCAATAATTTC+AGG | 0.233126 | 1.2:-14601824 | None:intergenic |
AATTGGAAGGTTTAGTAATA+TGG | 0.277883 | 1.2:+14600153 | MS.gene046813:CDS |
GTTCTCAGCATCAGGATTAT+TGG | 0.292453 | 1.2:+14601606 | MS.gene046813:CDS |
AGAGAAGTTGATGTTAAATC+AGG | 0.349446 | 1.2:+14601528 | MS.gene046813:CDS |
CTCCACCCTGAAATTATTGA+TGG | 0.373274 | 1.2:+14601818 | MS.gene046813:CDS |
CTCGTCTTTGGTGTTCCCCT+CGG | 0.382151 | 1.2:-14601885 | None:intergenic |
CTTTCTCTAGGTATGGTCCT+TGG | 0.413122 | 1.2:+14601422 | MS.gene046813:intron |
GAAGTAGCAGGTCTCGTCTT+TGG | 0.424937 | 1.2:-14601897 | None:intergenic |
AGCTCCTATACCCGATCAAT+TGG | 0.432637 | 1.2:-14601998 | None:intergenic |
TTGTAAGCAGATGTGTTGTA+AGG | 0.437036 | 1.2:+14601481 | MS.gene046813:CDS |
TCGTCTTTGGTGTTCCCCTC+GGG | 0.437338 | 1.2:-14601884 | None:intergenic |
ACAACACATCTGCTTACAAA+TGG | 0.446274 | 1.2:-14601477 | None:intergenic |
ATGAGCATGTTCTCAGCATC+AGG | 0.451170 | 1.2:+14601598 | MS.gene046813:CDS |
TTTGAGATTGCACTTAATAA+CGG | 0.454096 | 1.2:-14601927 | None:intergenic |
TGAACCAATTGATCGGGTAT+AGG | 0.456918 | 1.2:+14601994 | MS.gene046813:CDS |
TATTAGAGCACCGGTTCCTC+AGG | 0.468954 | 1.2:+14600249 | MS.gene046813:CDS |
CTTTCTGTACTTGTAGTAGC+AGG | 0.476962 | 1.2:-14601555 | None:intergenic |
GCCTTCCATCAATAATTTCA+GGG | 0.477985 | 1.2:-14601823 | None:intergenic |
TACTACAAGTACAGAAAGAT+TGG | 0.478896 | 1.2:+14601560 | MS.gene046813:CDS |
GAAATTATTGATGGAAGGCC+AGG | 0.481587 | 1.2:+14601827 | MS.gene046813:CDS |
AGGTATGGTCCTTGGTAAGA+AGG | 0.487057 | 1.2:+14601430 | MS.gene046813:intron |
AGACATCACCGGCAGCAGCC+TGG | 0.504488 | 1.2:+14600193 | MS.gene046813:CDS |
AGAAGGGCAACCTGAGGAAC+CGG | 0.506005 | 1.2:-14600259 | None:intergenic |
TGGTGGTGATCATCGACTTA+CGG | 0.507996 | 1.2:+14601626 | MS.gene046813:CDS |
TGATGGAAGGCCAGGTACAC+TGG | 0.508216 | 1.2:+14601835 | MS.gene046813:CDS |
GATTATGTCCAGGCTGCTGC+CGG | 0.530762 | 1.2:-14600201 | None:intergenic |
GATTCAATTACCAGTGTACC+TGG | 0.531597 | 1.2:-14601845 | None:intergenic |
AGCAATTCCTTCTGAGACAT+CGG | 0.537766 | 1.2:-14601957 | None:intergenic |
AAGGTTTAGTAATATGGAGA+TGG | 0.538000 | 1.2:+14600159 | MS.gene046813:CDS |
CTCTTAGACTTCCGATCTCG+AGG | 0.539438 | 1.2:-14601509 | None:intergenic |
CCGCACTGAACCAATTGATC+GGG | 0.542613 | 1.2:+14601988 | MS.gene046813:CDS |
GAACATGCTCATTGTCATCA+AGG | 0.542897 | 1.2:-14601587 | None:intergenic |
AACGGCTTCAACGAAGTAGC+AGG | 0.543380 | 1.2:-14601909 | None:intergenic |
TGTTAAGCATATTAGAGCAC+CGG | 0.544425 | 1.2:+14600240 | MS.gene046813:CDS |
ACCCTGAAATTATTGATGGA+AGG | 0.546775 | 1.2:+14601822 | MS.gene046813:CDS |
ACCGCACTGAACCAATTGAT+CGG | 0.550074 | 1.2:+14601987 | MS.gene046813:CDS |
CTCAGCATCAGGATTATTGG+TGG | 0.555236 | 1.2:+14601609 | MS.gene046813:CDS |
TGTAAGCAGATGTGTTGTAA+GGG | 0.557883 | 1.2:+14601482 | MS.gene046813:CDS |
CATCTTTCAGAACTATTCGT+CGG | 0.565624 | 1.2:+14601787 | MS.gene046813:intron |
GAGAAGTTGATGTTAAATCA+GGG | 0.568344 | 1.2:+14601529 | MS.gene046813:CDS |
GTAAGGGGAAACCTCGAGAT+CGG | 0.576734 | 1.2:+14601498 | MS.gene046813:CDS |
GTAAGCAGATGTGTTGTAAG+GGG | 0.581576 | 1.2:+14601483 | MS.gene046813:CDS |
TCACTTGCCGATGTCTCAGA+AGG | 0.585800 | 1.2:+14601950 | MS.gene046813:CDS |
GAAGCACACTGATTATGTCC+AGG | 0.586081 | 1.2:-14600211 | None:intergenic |
TTTGTGGTGGATATACCCGA+GGG | 0.646946 | 1.2:+14601869 | MS.gene046813:CDS |
AATATATTAGAAGACATCAC+CGG | 0.658365 | 1.2:+14600182 | MS.gene046813:CDS |
CTGATCGAACCTTCTTACCA+AGG | 0.687829 | 1.2:-14601439 | None:intergenic |
TTCCATCAATAATTTCAGGG+TGG | 0.700428 | 1.2:-14601820 | None:intergenic |
CCCGATCAATTGGTTCAGTG+CGG | 0.703627 | 1.2:-14601988 | None:intergenic |
TTGTGGTGGATATACCCGAG+GGG | 0.768021 | 1.2:+14601870 | MS.gene046813:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAACAAAATATAGTTA+TGG | + | chr1.2:14600480-14600499 | MS.gene046813:intron | 15.0% |
!! | ATAAATAACAAAAGAAAGAA+GGG | - | chr1.2:14600278-14600297 | None:intergenic | 15.0% |
!! | TATAAATAACAAAAGAAAGA+AGG | - | chr1.2:14600279-14600298 | None:intergenic | 15.0% |
!!! | TTCTAAAAAAACACTATTTA+AGG | - | chr1.2:14600459-14600478 | None:intergenic | 15.0% |
!!! | TTTTTAAAGAAGAATCAATT+CGG | - | chr1.2:14601734-14601753 | None:intergenic | 15.0% |
!! | CATTATACAAAAATATTGTG+AGG | - | chr1.2:14601360-14601379 | None:intergenic | 20.0% |
!! | TGGTTATGTAAATGTTAAAA+CGG | + | chr1.2:14600500-14600519 | MS.gene046813:intron | 20.0% |
!! | TTTAAATAGAAAATGAAGAG+CGG | - | chr1.2:14601055-14601074 | None:intergenic | 20.0% |
!!! | TTCAATTTGATTTGAATTGT+TGG | + | chr1.2:14600686-14600705 | MS.gene046813:intron | 20.0% |
!!! | TTGCTTTATTACTCTTTAAA+GGG | + | chr1.2:14600966-14600985 | MS.gene046813:intron | 20.0% |
! | AATATATTAGAAGACATCAC+CGG | + | chr1.2:14600182-14600201 | MS.gene046813:CDS | 25.0% |
! | AATTGGAAGGTTTAGTAATA+TGG | + | chr1.2:14600153-14600172 | MS.gene046813:CDS | 25.0% |
! | GGTAATTGGTATGAAATTTA+CGG | - | chr1.2:14601034-14601053 | None:intergenic | 25.0% |
! | GTAATTGGTATGAAATTTAC+GGG | - | chr1.2:14601033-14601052 | None:intergenic | 25.0% |
! | GTAATTTGAGAAAACAAAAG+TGG | + | chr1.2:14600589-14600608 | MS.gene046813:intron | 25.0% |
! | TAATTGGTATGAAATTTACG+GGG | - | chr1.2:14601032-14601051 | None:intergenic | 25.0% |
! | TCCTTAAAATGATTACTCTT+TGG | + | chr1.2:14601762-14601781 | MS.gene046813:intron | 25.0% |
! | TGCTATTGAATAAAGAGTTT+CGG | + | chr1.2:14601327-14601346 | MS.gene046813:intron | 25.0% |
! | TGTCGAGAAAATTAATAGTT+GGG | + | chr1.2:14600938-14600957 | MS.gene046813:intron | 25.0% |
! | TTGTCGAGAAAATTAATAGT+TGG | + | chr1.2:14600937-14600956 | MS.gene046813:intron | 25.0% |
! | TTGTGTTAGATATACAGTTA+TGG | + | chr1.2:14600398-14600417 | MS.gene046813:intron | 25.0% |
!! | ACCAAAGAGTAATCATTTTA+AGG | - | chr1.2:14601766-14601785 | None:intergenic | 25.0% |
!! | ACTATTAATTTTCTCGACAA+CGG | - | chr1.2:14600937-14600956 | None:intergenic | 25.0% |
!! | ATAAGATTTTAAGCAAACAG+AGG | - | chr1.2:14601699-14601718 | None:intergenic | 25.0% |
!! | CTTGCTTTATTACTCTTTAA+AGG | + | chr1.2:14600965-14600984 | MS.gene046813:intron | 25.0% |
!! | TTTGAGATTGCACTTAATAA+CGG | - | chr1.2:14601930-14601949 | None:intergenic | 25.0% |
!!! | ACAATCTATTTTTGCATCTT+TGG | + | chr1.2:14601087-14601106 | MS.gene046813:intron | 25.0% |
!!! | GAATGTTTTGATGATGTTTT+TGG | + | chr1.2:14600725-14600744 | MS.gene046813:intron | 25.0% |
!!! | GATGTTTTTGGTCTATTTTA+TGG | + | chr1.2:14600737-14600756 | MS.gene046813:intron | 25.0% |
AAATAAACATCACACAACGA+GGG | - | chr1.2:14601386-14601405 | None:intergenic | 30.0% | |
AAGGTTTAGTAATATGGAGA+TGG | + | chr1.2:14600159-14600178 | MS.gene046813:CDS | 30.0% | |
AGATATACAGTTATGGTTGT+TGG | + | chr1.2:14600405-14600424 | MS.gene046813:intron | 30.0% | |
GAAAAAATCGAACTGAATTG+AGG | - | chr1.2:14601293-14601312 | None:intergenic | 30.0% | |
TAAATAAACATCACACAACG+AGG | - | chr1.2:14601387-14601406 | None:intergenic | 30.0% | |
TACTACAAGTACAGAAAGAT+TGG | + | chr1.2:14601560-14601579 | MS.gene046813:CDS | 30.0% | |
! | ACTGGTAATTGAATCTTTTG+TGG | + | chr1.2:14601853-14601872 | MS.gene046813:CDS | 30.0% |
!! | ACAAATGGTTTGTACTTTTG+TGG | - | chr1.2:14601465-14601484 | None:intergenic | 30.0% |
!! | AGAGAAGTTGATGTTAAATC+AGG | + | chr1.2:14601528-14601547 | MS.gene046813:CDS | 30.0% |
!! | GAGAAGTTGATGTTAAATCA+GGG | + | chr1.2:14601529-14601548 | MS.gene046813:CDS | 30.0% |
!! | TGTGTGAAGATTTTTGTTGT+TGG | + | chr1.2:14600356-14600375 | MS.gene046813:intron | 30.0% |
!!! | ATGCATTTTTAGCACATCAA+AGG | + | chr1.2:14601175-14601194 | MS.gene046813:intron | 30.0% |
!!! | TGCTACTATCTTTTAGGTTT+TGG | + | chr1.2:14600793-14600812 | MS.gene046813:intron | 30.0% |
AAGCAAGCAATTTCCTTTAG+AGG | + | chr1.2:14600892-14600911 | MS.gene046813:intron | 35.0% | |
ACAACACATCTGCTTACAAA+TGG | - | chr1.2:14601480-14601499 | None:intergenic | 35.0% | |
ACCCTGAAATTATTGATGGA+AGG | + | chr1.2:14601822-14601841 | MS.gene046813:CDS | 35.0% | |
AGAAAATGAAGAGCGGTAAT+TGG | - | chr1.2:14601048-14601067 | None:intergenic | 35.0% | |
AGCAAGCAATTTCCTTTAGA+GGG | + | chr1.2:14600893-14600912 | MS.gene046813:intron | 35.0% | |
ATTGAGGTTCGCTTTGTAAT+TGG | - | chr1.2:14601277-14601296 | None:intergenic | 35.0% | |
CAGAGGAACAAAAAAGTTTC+TGG | - | chr1.2:14601682-14601701 | None:intergenic | 35.0% | |
CATCTTTCAGAACTATTCGT+CGG | + | chr1.2:14601787-14601806 | MS.gene046813:intron | 35.0% | |
CATGTGTAAAAATCTTGTGG+TGG | + | chr1.2:14601110-14601129 | MS.gene046813:intron | 35.0% | |
GCCTTCCATCAATAATTTCA+GGG | - | chr1.2:14601826-14601845 | None:intergenic | 35.0% | |
TGGCATGTGTAAAAATCTTG+TGG | + | chr1.2:14601107-14601126 | MS.gene046813:intron | 35.0% | |
TGTAAGCAGATGTGTTGTAA+GGG | + | chr1.2:14601482-14601501 | MS.gene046813:CDS | 35.0% | |
TGTTAAGCATATTAGAGCAC+CGG | + | chr1.2:14600240-14600259 | MS.gene046813:CDS | 35.0% | |
TGTTTGACATCAACATGAGT+CGG | + | chr1.2:14600649-14600668 | MS.gene046813:intron | 35.0% | |
TTATCTGCTTTACCCTCTAA+AGG | - | chr1.2:14600908-14600927 | None:intergenic | 35.0% | |
TTCCATCAATAATTTCAGGG+TGG | - | chr1.2:14601823-14601842 | None:intergenic | 35.0% | |
TTGTAAGCAGATGTGTTGTA+AGG | + | chr1.2:14601481-14601500 | MS.gene046813:CDS | 35.0% | |
! | AGATTTGCTTTCTCTAGGTA+TGG | + | chr1.2:14601415-14601434 | MS.gene046813:intron | 35.0% |
! | CTGATCTGCTACTATCTTTT+AGG | + | chr1.2:14600787-14600806 | MS.gene046813:intron | 35.0% |
! | GGTAATTGAATCTTTTGTGG+TGG | + | chr1.2:14601856-14601875 | MS.gene046813:CDS | 35.0% |
!! | TAAAACGGTTAGCTGACTTT+TGG | + | chr1.2:14600515-14600534 | MS.gene046813:intron | 35.0% |
!!! | AAGTTTCTGGTCATTTTGCA+AGG | - | chr1.2:14601669-14601688 | None:intergenic | 35.0% |
!!! | GATTTTTGTTGTTGGATGCA+TGG | + | chr1.2:14600364-14600383 | MS.gene046813:intron | 35.0% |
ATCACATTGTACCACAAAGC+AGG | - | chr1.2:14600767-14600786 | None:intergenic | 40.0% | |
CAGTTATGGTTGTTGGAACT+TGG | + | chr1.2:14600412-14600431 | MS.gene046813:intron | 40.0% | |
CATCAAAGGTTCGATCAGAT+TGG | + | chr1.2:14601189-14601208 | MS.gene046813:intron | 40.0% | |
CATCAACATGAGTCGGATAT+TGG | + | chr1.2:14600656-14600675 | MS.gene046813:intron | 40.0% | |
CGAGTATAACTCATCAGTGT+CGG | - | chr1.2:14600570-14600589 | None:intergenic | 40.0% | |
CTCCACCCTGAAATTATTGA+TGG | + | chr1.2:14601818-14601837 | MS.gene046813:CDS | 40.0% | |
CTTTCTGTACTTGTAGTAGC+AGG | - | chr1.2:14601558-14601577 | None:intergenic | 40.0% | |
GAAATTATTGATGGAAGGCC+AGG | + | chr1.2:14601827-14601846 | MS.gene046813:CDS | 40.0% | |
GAACATGCTCATTGTCATCA+AGG | - | chr1.2:14601590-14601609 | None:intergenic | 40.0% | |
GAGTATAACTCATCAGTGTC+GGG | - | chr1.2:14600569-14600588 | None:intergenic | 40.0% | |
GATTCAATTACCAGTGTACC+TGG | - | chr1.2:14601848-14601867 | None:intergenic | 40.0% | |
GGCCTTCCATCAATAATTTC+AGG | - | chr1.2:14601827-14601846 | None:intergenic | 40.0% | |
GTAAGCAGATGTGTTGTAAG+GGG | + | chr1.2:14601483-14601502 | MS.gene046813:CDS | 40.0% | |
GTTCTCAGCATCAGGATTAT+TGG | + | chr1.2:14601606-14601625 | MS.gene046813:CDS | 40.0% | |
TGTTGTTGGATGCATGGTTA+TGG | + | chr1.2:14600370-14600389 | MS.gene046813:intron | 40.0% | |
TTTATGGTTGACCTGCTTTG+TGG | + | chr1.2:14600753-14600772 | MS.gene046813:intron | 40.0% | |
! | AAGGTTCGATCAGATTGGTT+TGG | + | chr1.2:14601194-14601213 | MS.gene046813:intron | 40.0% |
!! | AGCAATTCCTTCTGAGACAT+CGG | - | chr1.2:14601960-14601979 | None:intergenic | 40.0% |
AAAGAAAGAAGGGCAACCTG+AGG | - | chr1.2:14600268-14600287 | None:intergenic | 45.0% | |
ACCGCACTGAACCAATTGAT+CGG | + | chr1.2:14601987-14602006 | MS.gene046813:CDS | 45.0% | |
AGGTATGGTCCTTGGTAAGA+AGG | + | chr1.2:14601430-14601449 | MS.gene046813:intron | 45.0% | |
ATGAGCATGTTCTCAGCATC+AGG | + | chr1.2:14601598-14601617 | MS.gene046813:CDS | 45.0% | |
CTCAGCATCAGGATTATTGG+TGG | + | chr1.2:14601609-14601628 | MS.gene046813:CDS | 45.0% | |
CTGATCGAACCTTCTTACCA+AGG | - | chr1.2:14601442-14601461 | None:intergenic | 45.0% | |
CTTTCTCTAGGTATGGTCCT+TGG | + | chr1.2:14601422-14601441 | MS.gene046813:intron | 45.0% | |
GATCCTTGTGAAGCATAGTG+TGG | + | chr1.2:14600849-14600868 | MS.gene046813:intron | 45.0% | |
TGACCACACTATGCTTCACA+AGG | - | chr1.2:14600855-14600874 | None:intergenic | 45.0% | |
! | CGCGTAGATTTGCTTTCTCT+AGG | + | chr1.2:14601410-14601429 | MS.gene046813:intron | 45.0% |
! | GAAGCACACTGATTATGTCC+AGG | - | chr1.2:14600214-14600233 | None:intergenic | 45.0% |
!! | TGGTGGTGATCATCGACTTA+CGG | + | chr1.2:14601626-14601645 | MS.gene046813:CDS | 45.0% |
!! | TTTGTGGTGGATATACCCGA+GGG | + | chr1.2:14601869-14601888 | MS.gene046813:CDS | 45.0% |
!!! | TTTTGTGGTGGATATACCCG+AGG | + | chr1.2:14601868-14601887 | MS.gene046813:CDS | 45.0% |
!!! | TATTCTTATTTTTTATTTTA+TGG | + | chr1.2:14600314-14600333 | MS.gene046813:intron | 5.0% |
AACGGCTTCAACGAAGTAGC+AGG | - | chr1.2:14601912-14601931 | None:intergenic | 50.0% | |
CCGCACTGAACCAATTGATC+GGG | + | chr1.2:14601988-14602007 | MS.gene046813:CDS | 50.0% | |
CTCTTAGACTTCCGATCTCG+AGG | - | chr1.2:14601512-14601531 | None:intergenic | 50.0% | |
GAAGTAGCAGGTCTCGTCTT+TGG | - | chr1.2:14601900-14601919 | None:intergenic | 50.0% | |
GTAAGGGGAAACCTCGAGAT+CGG | + | chr1.2:14601498-14601517 | MS.gene046813:CDS | 50.0% | |
TCACTTGCCGATGTCTCAGA+AGG | + | chr1.2:14601950-14601969 | MS.gene046813:CDS | 50.0% | |
! | CCCGATCAATTGGTTCAGTG+CGG | - | chr1.2:14601991-14602010 | None:intergenic | 50.0% |
!! | TATTAGAGCACCGGTTCCTC+AGG | + | chr1.2:14600249-14600268 | MS.gene046813:CDS | 50.0% |
!! | TTGTGGTGGATATACCCGAG+GGG | + | chr1.2:14601870-14601889 | MS.gene046813:CDS | 50.0% |
AGAAGGGCAACCTGAGGAAC+CGG | - | chr1.2:14600262-14600281 | None:intergenic | 55.0% | |
GATTATGTCCAGGCTGCTGC+CGG | - | chr1.2:14600204-14600223 | None:intergenic | 55.0% | |
TGATGGAAGGCCAGGTACAC+TGG | + | chr1.2:14601835-14601854 | MS.gene046813:CDS | 55.0% | |
!! | CTCGTCTTTGGTGTTCCCCT+CGG | - | chr1.2:14601888-14601907 | None:intergenic | 55.0% |
!! | TCGTCTTTGGTGTTCCCCTC+GGG | - | chr1.2:14601887-14601906 | None:intergenic | 55.0% |
AGACATCACCGGCAGCAGCC+TGG | + | chr1.2:14600193-14600212 | MS.gene046813:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 14600145 | 14602015 | 14600145 | ID=MS.gene046813 |
chr1.2 | mRNA | 14600145 | 14602015 | 14600145 | ID=MS.gene046813.t1;Parent=MS.gene046813 |
chr1.2 | exon | 14600145 | 14600270 | 14600145 | ID=MS.gene046813.t1.exon1;Parent=MS.gene046813.t1 |
chr1.2 | CDS | 14600145 | 14600270 | 14600145 | ID=cds.MS.gene046813.t1;Parent=MS.gene046813.t1 |
chr1.2 | exon | 14601432 | 14601647 | 14601432 | ID=MS.gene046813.t1.exon2;Parent=MS.gene046813.t1 |
chr1.2 | CDS | 14601432 | 14601647 | 14601432 | ID=cds.MS.gene046813.t1;Parent=MS.gene046813.t1 |
chr1.2 | exon | 14601797 | 14602015 | 14601797 | ID=MS.gene046813.t1.exon3;Parent=MS.gene046813.t1 |
chr1.2 | CDS | 14601797 | 14602015 | 14601797 | ID=cds.MS.gene046813.t1;Parent=MS.gene046813.t1 |
Gene Sequence |
Protein sequence |