AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047261

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047261.t1 MTR_2g021130 100.000 257 0 0 1 257 1 257 0.0 522
MS.gene047261.t1 MTR_1g071430 51.709 234 108 3 28 257 12 244 2.93e-78 236
MS.gene047261.t1 MTR_7g095640 53.586 237 105 3 24 256 2 237 7.02e-78 235
MS.gene047261.t1 MTR_1g110390 45.299 234 124 2 24 254 7 239 1.24e-65 204
MS.gene047261.t1 MTR_7g095530 44.206 233 121 4 28 254 6 235 1.76e-52 171
MS.gene047261.t1 MTR_7g095510 46.491 228 117 4 28 251 6 232 2.91e-52 170
MS.gene047261.t1 MTR_7g095600 43.750 224 120 5 28 246 6 228 5.88e-51 167
MS.gene047261.t1 MTR_7g095550 47.368 76 40 0 137 212 20 95 1.29e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047261.t1 AT4G15470 65.339 251 78 2 16 257 6 256 2.60e-111 321
MS.gene047261.t1 AT1G03070 52.500 240 109 3 21 256 9 247 8.29e-84 251
MS.gene047261.t1 AT1G03070 52.500 240 109 3 21 256 9 247 8.29e-84 251
MS.gene047261.t1 AT1G03070 52.500 240 109 3 21 256 9 247 8.29e-84 251
MS.gene047261.t1 AT4G02690 51.883 239 108 4 21 254 9 245 6.54e-77 233
MS.gene047261.t1 AT3G63310 51.261 238 103 5 28 257 7 239 4.68e-74 226
MS.gene047261.t1 AT4G14730 45.923 233 120 4 25 252 2 233 5.84e-65 202
MS.gene047261.t1 AT4G02690 44.068 236 91 6 21 253 9 206 1.80e-51 167

Find 73 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAACTGCTTATGCTTTC+TGG -0.049762 2.2:+64190513 MS.gene047261:CDS
GCTAAAATCCTTGCCCTTCT+TGG 0.234291 2.2:-64190540 None:intergenic
TCTAACTGCTTATGCTTTCT+GGG 0.272407 2.2:+64190514 MS.gene047261:CDS
GTGCAGATGTTCTTCCCTCT+TGG 0.290643 2.2:+64191319 MS.gene047261:intron
ATTGGAATCGTACAGATAAA+TGG 0.313565 2.2:-64190013 None:intergenic
CTCCTCTTAATCTTCTCCTT+AGG 0.318409 2.2:+64189954 MS.gene047261:CDS
TGCAGATGTTCTTCCCTCTT+GGG 0.340626 2.2:+64191320 MS.gene047261:intron
GAAAAGAGATGAAGCTGAAT+TGG 0.341580 2.2:+64189787 MS.gene047261:CDS
CTCATAATTATATCTTGCTT+GGG 0.347912 2.2:+64190163 MS.gene047261:CDS
CAATGTATTCATCATAAGTA+TGG 0.358120 2.2:-64191429 None:intergenic
CCATAGATAGCATGTGATAC+TGG 0.365656 2.2:-64191343 None:intergenic
GCTGAATTGGACATCGAATC+TGG 0.367286 2.2:+64189800 MS.gene047261:CDS
TCCTCTTAATCTTCTCCTTA+GGG 0.369097 2.2:+64189955 MS.gene047261:CDS
CGGTGAAAATCAACTCCGTT+GGG 0.369557 2.2:+64189850 MS.gene047261:CDS
CCTCATAATTATATCTTGCT+TGG 0.384343 2.2:+64190162 MS.gene047261:CDS
CCAGTATCACATGCTATCTA+TGG 0.386108 2.2:+64191343 MS.gene047261:CDS
ACCTGTTCCTTTCCATCTTG+AGG 0.417636 2.2:+64191485 MS.gene047261:CDS
TCCTCAAGATGGAAAGGAAC+AGG 0.423761 2.2:-64191486 None:intergenic
ATACTTATGATGAATACATT+GGG 0.443963 2.2:+64191431 MS.gene047261:CDS
CGGAGACGATGGTGGTTAAG+AGG 0.453233 2.2:-64189913 None:intergenic
TGCTTTCTGGGCTTCCAAGA+AGG 0.469986 2.2:+64190526 MS.gene047261:CDS
CCCCTAAGGAGAAGATTAAG+AGG 0.472124 2.2:-64189956 None:intergenic
CGAGAGAGAGACCTGGGTAG+AGG 0.472666 2.2:-64189829 None:intergenic
CTGGGCTTCCAAGAAGGGCA+AGG 0.482805 2.2:+64190532 MS.gene047261:CDS
ATTAAGAGGAGTATAGAAAA+CGG 0.483866 2.2:-64189942 None:intergenic
TTTCCATCTTGAGGATTCTG+AGG 0.486855 2.2:+64191494 MS.gene047261:CDS
TGTACTCACCGGCATGATGC+AGG 0.493957 2.2:+64190601 MS.gene047261:CDS
CTCTTTACTCTTGTACTCAC+CGG 0.497829 2.2:+64190590 MS.gene047261:CDS
TCGGTGAAAATCAACTCCGT+TGG 0.502314 2.2:+64189849 MS.gene047261:CDS
AGACGAGGAACAAGAGAAGA+GGG 0.503884 2.2:-64189985 None:intergenic
TTCCATCTTGAGGATTCTGA+GGG 0.509793 2.2:+64191495 MS.gene047261:CDS
CCAAGCAAGATATAATTATG+AGG 0.511257 2.2:-64190162 None:intergenic
GAAGAGGGGAATTGCCCCTA+AGG 0.512979 2.2:-64189970 None:intergenic
CATACTTATGATGAATACAT+TGG 0.514094 2.2:+64191430 MS.gene047261:CDS
GCTTTCTGGGCTTCCAAGAA+GGG 0.517151 2.2:+64190527 MS.gene047261:CDS
GGTTTCATTCGCAAAGTCTA+CGG 0.522355 2.2:+64189872 MS.gene047261:CDS
CTCTACCCAGGTCTCTCTCT+CGG 0.533320 2.2:+64189830 MS.gene047261:CDS
CATCTTGAGGATTCTGAGGG+AGG 0.543704 2.2:+64191498 MS.gene047261:CDS
GAGAGAGAGACCTGGGTAGA+GGG 0.551968 2.2:-64189828 None:intergenic
CATGCTATCTATGGTGGAGT+TGG 0.558076 2.2:+64191352 MS.gene047261:CDS
TTGTCGATTAGCTTCACCGT+TGG 0.565046 2.2:+64190195 MS.gene047261:CDS
AAGAGGCAGGTAAACAAAAG+AGG 0.565428 2.2:-64190572 None:intergenic
CTCCCTCAGAATCCTCAAGA+TGG 0.569106 2.2:-64191497 None:intergenic
AGTATAGAAAACGGTTATGA+CGG 0.569627 2.2:-64189933 None:intergenic
CCTCGTTTATCTTGTTGATG+CGG 0.569798 2.2:-64189752 None:intergenic
GAGTACAAGAGTAAAGAGGC+AGG 0.577257 2.2:-64190585 None:intergenic
TCAGAATCCTCAAGATGGAA+AGG 0.577543 2.2:-64191492 None:intergenic
AACGGTTATGACGGAGACGA+TGG 0.586691 2.2:-64189924 None:intergenic
CGTTTATCTTGTTGATGCGG+TGG 0.590169 2.2:-64189749 None:intergenic
GCAACCAACCTGCATCATGC+CGG 0.592343 2.2:-64190609 None:intergenic
CCTCTTAATCTTCTCCTTAG+GGG 0.595131 2.2:+64189956 MS.gene047261:CDS
CGGTGAGTACAAGAGTAAAG+AGG 0.595420 2.2:-64190589 None:intergenic
AAGACGAGGAACAAGAGAAG+AGG 0.601856 2.2:-64189986 None:intergenic
GTATCACATGCTATCTATGG+TGG 0.627746 2.2:+64191346 MS.gene047261:CDS
TTTCACCGAGAGAGAGACCT+GGG 0.628985 2.2:-64189835 None:intergenic
GCATGTGATACTGGCCCAAG+AGG 0.640221 2.2:-64191334 None:intergenic
GGTTATGACGGAGACGATGG+TGG 0.641554 2.2:-64189921 None:intergenic
TCTGGAGAAACCCTCTACCC+AGG 0.652055 2.2:+64189818 MS.gene047261:CDS
CATGTGATACTGGCCCAAGA+GGG 0.654330 2.2:-64191333 None:intergenic
GGTGAAAATCAACTCCGTTG+GGG 0.660285 2.2:+64189851 MS.gene047261:CDS
GTTACTTGTGCGAATACTGA+TGG 0.664827 2.2:+64190219 MS.gene047261:CDS
AACGGTGAAGCTAATCGACA+AGG 0.668700 2.2:-64190193 None:intergenic
TTCTGTTGATACCTCAACAA+CGG 0.671047 2.2:-64190135 None:intergenic
GTCGAGATAAAGAGTGACAG+AGG 0.674076 2.2:-64191455 None:intergenic
TACTTATGATGAATACATTG+GGG 0.675391 2.2:+64191432 MS.gene047261:CDS
GACGAGGAACAAGAGAAGAG+GGG 0.683500 2.2:-64189984 None:intergenic
AGGTAAACAAAAGAGGACCA+AGG 0.683783 2.2:-64190565 None:intergenic
ATTCGCACAAGTAACTCCAA+CGG 0.708898 2.2:-64190211 None:intergenic
TTAAGAGGATCTGAGCGGAG+AGG 0.713415 2.2:-64189898 None:intergenic
CCGCATCAACAAGATAAACG+AGG 0.719389 2.2:+64189752 MS.gene047261:CDS
AGATAAATGGAAGAAAGACG+AGG 0.735810 2.2:-64190000 None:intergenic
CTTTGCGAATGAAACCCCAA+CGG 0.748117 2.2:-64189865 None:intergenic
GGTGGTTAAGAGGATCTGAG+CGG 0.764189 2.2:-64189903 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAATTAAAAAAATCAA+AGG - chr2.2:64190046-64190065 None:intergenic 10.0%
!!! AATTCAATATTTTGAATTAA+AGG + chr2.2:64191025-64191044 MS.gene047261:intron 10.0%
!!! ATTCAATATTTTGAATTAAA+GGG + chr2.2:64191026-64191045 MS.gene047261:intron 10.0%
!! CTTTCTATTATTTATCTATT+TGG + chr2.2:64190273-64190292 MS.gene047261:intron 15.0%
!! GAATGTAAGTAAATTTATTT+AGG + chr2.2:64190333-64190352 MS.gene047261:intron 15.0%
!!! AATTGTTTTATGAATTGATT+AGG + chr2.2:64190057-64190076 MS.gene047261:intron 15.0%
!!! AGAGTTTTGAATTTTAAAAT+TGG + chr2.2:64191125-64191144 MS.gene047261:intron 15.0%
!!! ATTGTTTTATGAATTGATTA+GGG + chr2.2:64190058-64190077 MS.gene047261:intron 15.0%
!! AATAGAAAGAGAATAACAAA+TGG - chr2.2:64190262-64190281 None:intergenic 20.0%
!! ATACTTATGATGAATACATT+GGG + chr2.2:64191431-64191450 MS.gene047261:CDS 20.0%
!! ATGATACAAAAATAAATGAC+AGG - chr2.2:64190644-64190663 None:intergenic 20.0%
!! GATTAAGAATGGAATTATTA+GGG + chr2.2:64190793-64190812 MS.gene047261:intron 20.0%
!! TACACTATTATTACTTTGAT+TGG + chr2.2:64190414-64190433 MS.gene047261:intron 20.0%
!! TTAAAAAAATCAAAGGATGA+AGG - chr2.2:64190039-64190058 None:intergenic 20.0%
!!! TATTTATCTATTTGGTTTTG+CGG + chr2.2:64190281-64190300 MS.gene047261:intron 20.0%
! AAGTAATAATAGTGTATGCT+CGG - chr2.2:64190410-64190429 None:intergenic 25.0%
! CAATGTATTCATCATAAGTA+TGG - chr2.2:64191432-64191451 None:intergenic 25.0%
! CATACTTATGATGAATACAT+TGG + chr2.2:64191430-64191449 MS.gene047261:CDS 25.0%
! CTCATAATTATATCTTGCTT+GGG + chr2.2:64190163-64190182 MS.gene047261:CDS 25.0%
! GGATTAAGAATGGAATTATT+AGG + chr2.2:64190792-64190811 MS.gene047261:intron 25.0%
! TACTTATGATGAATACATTG+GGG + chr2.2:64191432-64191451 MS.gene047261:CDS 25.0%
!! ATTAAGAGGAGTATAGAAAA+CGG - chr2.2:64189945-64189964 None:intergenic 25.0%
!! GTTGTCAATATGATAATGTT+AGG + chr2.2:64190735-64190754 MS.gene047261:intron 25.0%
!! TCAATATGATAATGTTAGGA+TGG + chr2.2:64190739-64190758 MS.gene047261:intron 25.0%
!! TTCTACCATATTTTCTACAA+TGG - chr2.2:64190836-64190855 None:intergenic 25.0%
!! TTGTATCATTGATTGATAAC+TGG + chr2.2:64190655-64190674 MS.gene047261:intron 25.0%
!!! GTTAAACCTTTTTTCCTTAT+AGG - chr2.2:64191220-64191239 None:intergenic 25.0%
AAAATCAAAGGATGAAGGAT+TGG - chr2.2:64190034-64190053 None:intergenic 30.0%
AGTATAGAAAACGGTTATGA+CGG - chr2.2:64189936-64189955 None:intergenic 30.0%
ATAATGTTAGGATGGATAAG+TGG + chr2.2:64190747-64190766 MS.gene047261:intron 30.0%
ATTGGAATCGTACAGATAAA+TGG - chr2.2:64190016-64190035 None:intergenic 30.0%
CCAAGCAAGATATAATTATG+AGG - chr2.2:64190165-64190184 None:intergenic 30.0%
CCTCATAATTATATCTTGCT+TGG + chr2.2:64190162-64190181 MS.gene047261:CDS 30.0%
GAAAATATGGTAGAAATCAC+TGG + chr2.2:64190841-64190860 MS.gene047261:intron 30.0%
TTATAGTGAATCACACCTAA+TGG - chr2.2:64191161-64191180 None:intergenic 30.0%
! ATTGATTGATAACTGGTTGT+TGG + chr2.2:64190662-64190681 MS.gene047261:intron 30.0%
! ATTTGGGTTAGGATTAAGAA+TGG + chr2.2:64190782-64190801 MS.gene047261:intron 30.0%
AAATGACCTAGTCTAAGTCT+AGG + chr2.2:64190936-64190955 MS.gene047261:intron 35.0%
ACGTGTCAATATGAACGAAT+GGG + chr2.2:64190710-64190729 MS.gene047261:intron 35.0%
AGATAAATGGAAGAAAGACG+AGG - chr2.2:64190003-64190022 None:intergenic 35.0%
CGCTACCATTGTAGAAAATA+TGG + chr2.2:64190828-64190847 MS.gene047261:intron 35.0%
GAAAAGAGATGAAGCTGAAT+TGG + chr2.2:64189787-64189806 MS.gene047261:CDS 35.0%
GATAATGAAAAGCTGTCTCT+AGG - chr2.2:64191075-64191094 None:intergenic 35.0%
GCATCACCTATAAGGAAAAA+AGG + chr2.2:64191211-64191230 MS.gene047261:intron 35.0%
TACGTGTCAATATGAACGAA+TGG + chr2.2:64190709-64190728 MS.gene047261:intron 35.0%
TATCATATGCTTTGACACCA+CGG + chr2.2:64191091-64191110 MS.gene047261:intron 35.0%
TATGTCTGTTGTTGTAATGC+AGG + chr2.2:64190443-64190462 MS.gene047261:intron 35.0%
TCCTCTTAATCTTCTCCTTA+GGG + chr2.2:64189955-64189974 MS.gene047261:CDS 35.0%
TCTAACTGCTTATGCTTTCT+GGG + chr2.2:64190514-64190533 MS.gene047261:CDS 35.0%
TGAATCACACCTAATGGAAA+AGG - chr2.2:64191155-64191174 None:intergenic 35.0%
TTCTGTTGATACCTCAACAA+CGG - chr2.2:64190138-64190157 None:intergenic 35.0%
! GATTAACAGAAGCACGTAAA+CGG + chr2.2:64190981-64191000 MS.gene047261:intron 35.0%
! GCTCAAGACTAGATTTTCTT+TGG + chr2.2:64191297-64191316 MS.gene047261:intron 35.0%
!! GACTTAGACTAGGTCATTTT+TGG - chr2.2:64190935-64190954 None:intergenic 35.0%
!!! ACTGGTTGTTGGTTGTTTTT+TGG + chr2.2:64190673-64190692 MS.gene047261:intron 35.0%
!!! ATTGGCTTTCCTTTTCCATT+AGG + chr2.2:64191143-64191162 MS.gene047261:intron 35.0%
!!! TAGTTTTGATTCCGTTGTTG+AGG + chr2.2:64190124-64190143 MS.gene047261:intron 35.0%
!!! TTGATTAGGGTTTTATTGCG+TGG + chr2.2:64190071-64190090 MS.gene047261:intron 35.0%
AAAAATTGTGCTTGAGGCGT+TGG + chr2.2:64190466-64190485 MS.gene047261:CDS 40.0%
AAGAGGCAGGTAAACAAAAG+AGG - chr2.2:64190575-64190594 None:intergenic 40.0%
AGGTAAACAAAAGAGGACCA+AGG - chr2.2:64190568-64190587 None:intergenic 40.0%
ATATGGTAGAAATCACTGGC+TGG + chr2.2:64190845-64190864 MS.gene047261:intron 40.0%
ATTCGCACAAGTAACTCCAA+CGG - chr2.2:64190214-64190233 None:intergenic 40.0%
CATGTGTTGCATCACCTATA+AGG + chr2.2:64191203-64191222 MS.gene047261:intron 40.0%
CCAGTATCACATGCTATCTA+TGG + chr2.2:64191343-64191362 MS.gene047261:CDS 40.0%
CCATAGATAGCATGTGATAC+TGG - chr2.2:64191346-64191365 None:intergenic 40.0%
CCTCGTTTATCTTGTTGATG+CGG - chr2.2:64189755-64189774 None:intergenic 40.0%
CCTCTTAATCTTCTCCTTAG+GGG + chr2.2:64189956-64189975 MS.gene047261:CDS 40.0%
CTCCTCTTAATCTTCTCCTT+AGG + chr2.2:64189954-64189973 MS.gene047261:CDS 40.0%
CTCTAACTGCTTATGCTTTC+TGG + chr2.2:64190513-64190532 MS.gene047261:CDS 40.0%
CTCTTTACTCTTGTACTCAC+CGG + chr2.2:64190590-64190609 MS.gene047261:CDS 40.0%
GGTTTCATTCGCAAAGTCTA+CGG + chr2.2:64189872-64189891 MS.gene047261:CDS 40.0%
GTATCACATGCTATCTATGG+TGG + chr2.2:64191346-64191365 MS.gene047261:CDS 40.0%
GTTACTTGTGCGAATACTGA+TGG + chr2.2:64190219-64190238 MS.gene047261:CDS 40.0%
TAAACGGAGGATAGATGAGA+TGG + chr2.2:64190997-64191016 MS.gene047261:intron 40.0%
TCAGAATCCTCAAGATGGAA+AGG - chr2.2:64191495-64191514 None:intergenic 40.0%
TGCAGGAAAAATTGTGCTTG+AGG + chr2.2:64190460-64190479 MS.gene047261:intron 40.0%
TTCCATCTTGAGGATTCTGA+GGG + chr2.2:64191495-64191514 MS.gene047261:CDS 40.0%
TTGTGCGAATACTGATGGTA+GGG + chr2.2:64190224-64190243 MS.gene047261:intron 40.0%
TTTCCATCTTGAGGATTCTG+AGG + chr2.2:64191494-64191513 MS.gene047261:CDS 40.0%
! AAAGCTGTCTCTAGGAGTTT+CGG - chr2.2:64191067-64191086 None:intergenic 40.0%
! AACTCTTGTGTTTGAAACCG+TGG - chr2.2:64191111-64191130 None:intergenic 40.0%
! GGCGACACAAAAATTGATTC+TGG + chr2.2:64190302-64190321 MS.gene047261:intron 40.0%
AACGGTGAAGCTAATCGACA+AGG - chr2.2:64190196-64190215 None:intergenic 45.0%
AAGACGAGGAACAAGAGAAG+AGG - chr2.2:64189989-64190008 None:intergenic 45.0%
ACCTGTTCCTTTCCATCTTG+AGG + chr2.2:64191485-64191504 MS.gene047261:CDS 45.0%
AGACCACCTAGACTTAGACT+AGG - chr2.2:64190945-64190964 None:intergenic 45.0%
AGACGAGGAACAAGAGAAGA+GGG - chr2.2:64189988-64190007 None:intergenic 45.0%
AGTCTAAGTCTAGGTGGTCT+AGG + chr2.2:64190945-64190964 MS.gene047261:intron 45.0%
AGTGGTCACGCAGGATAATT+TGG + chr2.2:64190765-64190784 MS.gene047261:intron 45.0%
CCCCTAAGGAGAAGATTAAG+AGG - chr2.2:64189959-64189978 None:intergenic 45.0%
CCGCATCAACAAGATAAACG+AGG + chr2.2:64189752-64189771 MS.gene047261:CDS 45.0%
CGGTGAAAATCAACTCCGTT+GGG + chr2.2:64189850-64189869 MS.gene047261:CDS 45.0%
CGGTGAGTACAAGAGTAAAG+AGG - chr2.2:64190592-64190611 None:intergenic 45.0%
CGTTTATCTTGTTGATGCGG+TGG - chr2.2:64189752-64189771 None:intergenic 45.0%
CTTGTGCGAATACTGATGGT+AGG + chr2.2:64190223-64190242 MS.gene047261:intron 45.0%
CTTTGCGAATGAAACCCCAA+CGG - chr2.2:64189868-64189887 None:intergenic 45.0%
GAGTACAAGAGTAAAGAGGC+AGG - chr2.2:64190588-64190607 None:intergenic 45.0%
GCTAAAATCCTTGCCCTTCT+TGG - chr2.2:64190543-64190562 None:intergenic 45.0%
GCTGAATTGGACATCGAATC+TGG + chr2.2:64189800-64189819 MS.gene047261:CDS 45.0%
GGTGAAAATCAACTCCGTTG+GGG + chr2.2:64189851-64189870 MS.gene047261:CDS 45.0%
GTCGAGATAAAGAGTGACAG+AGG - chr2.2:64191458-64191477 None:intergenic 45.0%
GTGGTCACGCAGGATAATTT+GGG + chr2.2:64190766-64190785 MS.gene047261:intron 45.0%
TCCTCAAGATGGAAAGGAAC+AGG - chr2.2:64191489-64191508 None:intergenic 45.0%
TCGGTGAAAATCAACTCCGT+TGG + chr2.2:64189849-64189868 MS.gene047261:CDS 45.0%
TGACCTAGTCTAAGTCTAGG+TGG + chr2.2:64190939-64190958 MS.gene047261:intron 45.0%
TGCAGATGTTCTTCCCTCTT+GGG + chr2.2:64191320-64191339 MS.gene047261:intron 45.0%
! CACGCAGGATAATTTGGGTT+AGG + chr2.2:64190771-64190790 MS.gene047261:intron 45.0%
! CATGCTATCTATGGTGGAGT+TGG + chr2.2:64191352-64191371 MS.gene047261:CDS 45.0%
! TAACAGAAGCACGTAAACGG+AGG + chr2.2:64190984-64191003 MS.gene047261:intron 45.0%
!! TTGTCGATTAGCTTCACCGT+TGG + chr2.2:64190195-64190214 MS.gene047261:CDS 45.0%
!!! GGCAAGGATTTTAGCTACCT+TGG + chr2.2:64190548-64190567 MS.gene047261:CDS 45.0%
CATGTGATACTGGCCCAAGA+GGG - chr2.2:64191336-64191355 None:intergenic 50.0%
CTAGGTGGTCTAGGAATGTG+TGG + chr2.2:64190954-64190973 MS.gene047261:intron 50.0%
CTCCCTCAGAATCCTCAAGA+TGG - chr2.2:64191500-64191519 None:intergenic 50.0%
GACGAGGAACAAGAGAAGAG+GGG - chr2.2:64189987-64190006 None:intergenic 50.0%
GCTTTCTGGGCTTCCAAGAA+GGG + chr2.2:64190527-64190546 MS.gene047261:CDS 50.0%
GGTGGTTAAGAGGATCTGAG+CGG - chr2.2:64189906-64189925 None:intergenic 50.0%
GTGCAGATGTTCTTCCCTCT+TGG + chr2.2:64191319-64191338 MS.gene047261:intron 50.0%
TGCTTTCTGGGCTTCCAAGA+AGG + chr2.2:64190526-64190545 MS.gene047261:CDS 50.0%
TTAAGAGGATCTGAGCGGAG+AGG - chr2.2:64189901-64189920 None:intergenic 50.0%
TTTCACCGAGAGAGAGACCT+GGG - chr2.2:64189838-64189857 None:intergenic 50.0%
! AACGGTTATGACGGAGACGA+TGG - chr2.2:64189927-64189946 None:intergenic 50.0%
! CATCTTGAGGATTCTGAGGG+AGG + chr2.2:64191498-64191517 MS.gene047261:CDS 50.0%
! TTTTCACCGAGAGAGAGACC+TGG - chr2.2:64189839-64189858 None:intergenic 50.0%
!!! GGCGTTGGTTTTGACATCTG+CGG + chr2.2:64190481-64190500 MS.gene047261:CDS 50.0%
!!! GTTGGTTTTGACATCTGCGG+TGG + chr2.2:64190484-64190503 MS.gene047261:CDS 50.0%
CTCTACCCAGGTCTCTCTCT+CGG + chr2.2:64189830-64189849 MS.gene047261:CDS 55.0%
GAAGAGGGGAATTGCCCCTA+AGG - chr2.2:64189973-64189992 None:intergenic 55.0%
GAGAGAGAGACCTGGGTAGA+GGG - chr2.2:64189831-64189850 None:intergenic 55.0%
GCAACCAACCTGCATCATGC+CGG - chr2.2:64190612-64190631 None:intergenic 55.0%
GCATGTGATACTGGCCCAAG+AGG - chr2.2:64191337-64191356 None:intergenic 55.0%
GGATGGATAAGTGGTCACGC+AGG + chr2.2:64190756-64190775 MS.gene047261:intron 55.0%
TCTGGAGAAACCCTCTACCC+AGG + chr2.2:64189818-64189837 MS.gene047261:CDS 55.0%
TGTACTCACCGGCATGATGC+AGG + chr2.2:64190601-64190620 MS.gene047261:CDS 55.0%
! CGGAGACGATGGTGGTTAAG+AGG - chr2.2:64189916-64189935 None:intergenic 55.0%
! GGTTATGACGGAGACGATGG+TGG - chr2.2:64189924-64189943 None:intergenic 55.0%
CGAGAGAGAGACCTGGGTAG+AGG - chr2.2:64189832-64189851 None:intergenic 60.0%
CTCACCGGCATGATGCAGGT+TGG + chr2.2:64190605-64190624 MS.gene047261:intron 60.0%
CTGGGCTTCCAAGAAGGGCA+AGG + chr2.2:64190532-64190551 MS.gene047261:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 64189728 64191531 64189728 ID=MS.gene047261
chr2.2 mRNA 64189728 64191531 64189728 ID=MS.gene047261.t1;Parent=MS.gene047261
chr2.2 exon 64189728 64190022 64189728 ID=MS.gene047261.t1.exon1;Parent=MS.gene047261.t1
chr2.2 CDS 64189728 64190022 64189728 ID=cds.MS.gene047261.t1;Parent=MS.gene047261.t1
chr2.2 exon 64190127 64190240 64190127 ID=MS.gene047261.t1.exon2;Parent=MS.gene047261.t1
chr2.2 CDS 64190127 64190240 64190127 ID=cds.MS.gene047261.t1;Parent=MS.gene047261.t1
chr2.2 exon 64190465 64190622 64190465 ID=MS.gene047261.t1.exon3;Parent=MS.gene047261.t1
chr2.2 CDS 64190465 64190622 64190465 ID=cds.MS.gene047261.t1;Parent=MS.gene047261.t1
chr2.2 exon 64191325 64191531 64191325 ID=MS.gene047261.t1.exon4;Parent=MS.gene047261.t1
chr2.2 CDS 64191325 64191531 64191325 ID=cds.MS.gene047261.t1;Parent=MS.gene047261.t1
Gene Sequence

>MS.gene047261

ATGATGATGTTCGATCAGCAACCACCGCATCAACAAGATAAACGAGGCTACACAAGCGTGAAAAGAGATGAAGCTGAATTGGACATCGAATCTGGAGAAACCCTCTACCCAGGTCTCTCTCTCGGTGAAAATCAACTCCGTTGGGGTTTCATTCGCAAAGTCTACGGAATCCTCTCCGCTCAGATCCTCTTAACCACCATCGTCTCCGTCATAACCGTTTTCTATACTCCTCTTAATCTTCTCCTTAGGGGCAATTCCCCTCTTCTCTTGTTCCTCGTCTTTCTTCCATTTATCTGTACGATTCCAATCCTTCATCCTTTGATTTTTTTAATTGTTTTATGAATTGATTAGGGTTTTATTGCGTGGATCTGATTTGATTTTTTTTTATTTTTTTTGTAGTTTTGATTCCGTTGTTGAGGTATCAACAGAAGCATCCTCATAATTATATCTTGCTTGGGCTTTTTACCTTGTCGATTAGCTTCACCGTTGGAGTTACTTGTGCGAATACTGATGGTAGGGTTTCGTTCTCATCCATTTGTTATTCTCTTTCTATTATTTATCTATTTGGTTTTGCGGCGACACAAAAATTGATTCTGGTTAAAATTGAATGTAAGTAAATTTATTTAGGTTTATCTAAGTAAATTTTGAAGAATCAATTTTTGATGCTTCAAAATTCAAACCGAGCATACACTATTATTACTTTGATTGGTTGTAATATGTCTGTTGTTGTAATGCAGGAAAAATTGTGCTTGAGGCGTTGGTTTTGACATCTGCGGTGGTTTCTTCTCTAACTGCTTATGCTTTCTGGGCTTCCAAGAAGGGCAAGGATTTTAGCTACCTTGGTCCTCTTTTGTTTACCTGCCTCTTTACTCTTGTACTCACCGGCATGATGCAGGTTGGTTGCATTACATTTCCTGTCATTTATTTTTGTATCATTGATTGATAACTGGTTGTTGGTTGTTTTTTGGCTTTAGTATTTTATACGTGTCAATATGAACGAATGGGAAGTTGTCAATATGATAATGTTAGGATGGATAAGTGGTCACGCAGGATAATTTGGGTTAGGATTAAGAATGGAATTATTAGGGAAAAAAATGAGTCGCTACCATTGTAGAAAATATGGTAGAAATCACTGGCTGGAATCAGTGACATTAGAAGATATGTGATCTGATCAGAAGTAAGTTTGAATCTTTATGATGTGAAACCAAAAATGACCTAGTCTAAGTCTAGGTGGTCTAGGAATGTGTGGTGAAGATTAACAGAAGCACGTAAACGGAGGATAGATGAGATGGAATTCAATTCAATATTTTGAATTAAAGGGAGACTGTTGTTGATTCCGAAACTCCTAGAGACAGCTTTTCATTATCATATGCTTTGACACCACGGTTTCAAACACAAGAGTTTTGAATTTTAAAATTGGCTTTCCTTTTCCATTAGGTGTGATTCACTATAAGATATTGTGAAATTGTTGTATTCATGTGTTGCATCACCTATAAGGAAAAAAGGTTTAACTATAGATGCACGCATATGAAATTGTTGTACATAGTTTATGCTTGCATCTTTTCTCTTGCTCAAGACTAGATTTTCTTTGGTGCAGATGTTCTTCCCTCTTGGGCCAGTATCACATGCTATCTATGGTGGAGTTGGTGCTATGATTTTCTCTGCTTATATTGTCTATGACACTGACAATCTGATCAAGCGCCATACTTATGATGAATACATTGGGGCCTCTGTCACTCTTTATCTCGACATTCTGAACCTGTTCCTTTCCATCTTGAGGATTCTGAGGGAGGCAAACAATTAA
Protein sequence

>MS.gene047261.t1

MMMFDQQPPHQQDKRGYTSVKRDEAELDIESGETLYPGLSLGENQLRWGFIRKVYGILSAQILLTTIVSVITVFYTPLNLLLRGNSPLLLFLVFLPFIFLIPLLRYQQKHPHNYILLGLFTLSISFTVGVTCANTDGKIVLEALVLTSAVVSSLTAYAFWASKKGKDFSYLGPLLFTCLFTLVLTGMMQMFFPLGPVSHAIYGGVGAMIFSAYIVYDTDNLIKRHTYDEYIGASVTLYLDILNLFLSILRILREANN