AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047515


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047515.t1 MTR_4g050760 96.914 324 10 0 1 324 1 324 0.0 641
MS.gene047515.t1 MTR_2g012380 96.914 324 10 0 1 324 1 324 0.0 641
MS.gene047515.t1 MTR_2g012420 92.901 324 23 0 1 324 1 324 0.0 610
MS.gene047515.t1 MTR_2g012380 96.538 260 9 0 1 260 1 260 0.0 514
MS.gene047515.t1 MTR_4g050710 95.492 244 11 0 81 324 4 247 1.01e-170 474
MS.gene047515.t1 MTR_2g012420 95.492 244 11 0 81 324 10 253 1.77e-170 473
MS.gene047515.t1 MTR_2g012420 96.875 192 6 0 133 324 1 192 2.14e-134 380
MS.gene047515.t1 MTR_4g029500 32.209 326 215 4 1 324 52 373 5.87e-41 147
MS.gene047515.t1 MTR_2g012390 88.889 63 7 0 82 144 5 67 2.71e-31 113
MS.gene047515.t1 MTR_8g064610 30.178 338 188 13 1 323 76 380 1.08e-26 108
MS.gene047515.t1 MTR_3g093620 30.744 309 206 3 19 324 33 336 1.90e-26 107
MS.gene047515.t1 MTR_4g086400 31.674 221 139 6 26 239 175 390 5.19e-23 99.8
MS.gene047515.t1 MTR_4g086400 31.674 221 139 6 26 239 315 530 7.16e-23 99.8
MS.gene047515.t1 MTR_4g086410 27.414 321 199 9 26 325 315 622 5.57e-22 97.1
MS.gene047515.t1 MTR_4g032995 27.928 333 200 12 10 323 16 327 7.90e-22 94.7
MS.gene047515.t1 MTR_4g036310 29.231 325 206 10 10 323 16 327 4.58e-21 92.4
MS.gene047515.t1 MTR_4g033205 28.655 342 186 15 10 323 16 327 1.12e-20 91.3
MS.gene047515.t1 MTR_7g055743 26.791 321 211 10 14 323 60 367 1.23e-18 85.9
MS.gene047515.t1 MTR_6g012170 28.485 330 180 13 13 323 24 316 5.91e-18 83.6
MS.gene047515.t1 MTR_8g035880 32.727 220 127 6 10 217 13 223 7.92e-18 83.2
MS.gene047515.t1 MTR_2g078520 26.286 350 212 10 2 323 27 358 8.32e-18 83.6
MS.gene047515.t1 MTR_8g035630 32.456 228 133 6 2 217 5 223 1.21e-17 82.8
MS.gene047515.t1 MTR_7g034395 29.538 325 162 12 23 323 32 313 4.04e-16 78.2
MS.gene047515.t1 MTR_4g036260 25.965 285 185 9 50 323 37 306 5.64e-14 71.6
MS.gene047515.t1 MTR_6g012160 30.579 242 137 9 13 237 24 251 1.89e-13 70.1
MS.gene047515.t1 MTR_8g095220 25.223 337 188 11 1 278 54 385 1.91e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047515.t1 AT4G21580 73.994 323 84 0 1 323 1 323 1.16e-175 489
MS.gene047515.t1 AT4G21580 72.446 323 83 1 1 323 1 317 8.33e-170 474
MS.gene047515.t1 AT4G21580 72.414 290 80 0 34 323 1 290 1.15e-153 432
MS.gene047515.t1 AT5G61510 31.193 327 217 4 1 324 84 405 1.93e-38 141
MS.gene047515.t1 AT5G61510 30.892 314 209 4 14 324 40 348 4.89e-35 130
MS.gene047515.t1 AT1G23740 30.473 338 187 12 1 323 78 382 8.97e-28 112
MS.gene047515.t1 AT3G56460 27.246 334 218 7 7 325 15 338 6.09e-24 100
MS.gene047515.t1 AT1G49670 31.336 217 137 6 28 239 317 526 1.22e-21 95.9
MS.gene047515.t1 AT4G13010 28.834 326 206 9 10 323 16 327 9.88e-21 91.3
MS.gene047515.t1 AT1G49670 29.114 237 139 6 28 239 317 549 8.83e-20 90.5
MS.gene047515.t1 AT3G15090 27.794 349 208 13 2 323 33 364 1.72e-18 85.5
MS.gene047515.t1 AT5G63620 25.664 339 184 12 1 278 56 387 1.74e-14 74.3
MS.gene047515.t1 AT5G63620 25.369 339 185 12 1 278 56 387 3.52e-14 73.2

Find 88 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGATCTACGTGCTTTATT+TGG 0.228957 2.1:+72073827 MS.gene047515:CDS
ATGAGTACTTCATTGTCTTT+AGG 0.244727 2.1:-72072158 None:intergenic
ACCTTTCCTTCTGCAATTGC+AGG 0.276088 2.1:-72074872 None:intergenic
AATCATACAACTTACCAATA+AGG 0.288330 2.1:-72073040 None:intergenic
TATGACAAGCCGGCTATCTA+AGG 0.293441 2.1:+72073011 MS.gene047515:CDS
GAACGGTATCGGCACTGTTA+AGG 0.335381 2.1:-72072199 None:intergenic
TTCATCAATTCTCAGGTTCA+TGG 0.344560 2.1:+72073233 MS.gene047515:intron
TGATGTTATTCTTGATTGTA+TGG 0.350274 2.1:+72073715 MS.gene047515:CDS
TCTTGAAGTTGTAGAACTTC+AGG 0.359966 2.1:-72072119 None:intergenic
AACGGTATCGGCACTGTTAA+GGG 0.374677 2.1:-72072198 None:intergenic
TATCCAGGTCTTGAATGTTC+TGG 0.375437 2.1:+72072263 MS.gene047515:CDS
TGCGGAGGCTCACCGGCTTA+TGG 0.376154 2.1:+72074934 MS.gene047515:CDS
ATCAAGATTTCTTTGATAGT+AGG 0.380590 2.1:-72073744 None:intergenic
AACGTTTCCAACTGGAAAAT+CGG 0.390954 2.1:+72072308 MS.gene047515:CDS
TCCTGAGGGACAAGTTCTTC+CGG 0.391442 2.1:+72072915 MS.gene047515:CDS
ACTTCATTGTCTTTAGGTTG+AGG 0.404599 2.1:-72072152 None:intergenic
AGAGAAATCCCGGGTGGAAC+CGG 0.415538 2.1:-72072934 None:intergenic
CTGAAGTAGATAAGAATGTT+TGG 0.416239 2.1:+72074849 MS.gene047515:CDS
CAGGTATGTGCTCTTCTAGC+TGG 0.420815 2.1:+72072865 MS.gene047515:intron
TTGGTATAAACGTTTCCAAC+TGG 0.432549 2.1:+72072300 MS.gene047515:CDS
CTTCATTGTCTTTAGGTTGA+GGG 0.442897 2.1:-72072151 None:intergenic
GCCTTTCCTTTGAACGGTAT+CGG 0.446179 2.1:-72072210 None:intergenic
GGGCTTGCACCTTGAGGGAT+AGG 0.452215 2.1:-72072239 None:intergenic
ATGGAAAGCAGTCAGCATAT+TGG 0.471076 2.1:+72074953 MS.gene047515:CDS
TTACAAAACAGAGGACTTTG+TGG 0.473910 2.1:+72073520 MS.gene047515:CDS
AGAACATTCAAGACCTGGAT+AGG 0.477853 2.1:-72072261 None:intergenic
TGCATCCTTCAGAGAAATCC+CGG 0.479401 2.1:-72072944 None:intergenic
CTGAAGCTGCGGAGGCTCAC+CGG 0.480756 2.1:+72074927 MS.gene047515:CDS
CAACTGGAAAATCGGTGATC+AGG 0.480863 2.1:+72072316 MS.gene047515:CDS
CAAGTTCTTCCGGTTCCACC+CGG 0.482083 2.1:+72072925 MS.gene047515:CDS
GCAAGGGTAAAGGAAGAAAC+TGG 0.482737 2.1:+72073542 MS.gene047515:CDS
GGACTTTGTGGCAAGGGTAA+AGG 0.486871 2.1:+72073532 MS.gene047515:CDS
GATAGGGGCTTGCACCTTGA+GGG 0.487874 2.1:-72072244 None:intergenic
TCAAGAGTATTTGTTACTGC+AGG 0.488629 2.1:+72073308 MS.gene047515:CDS
CCCTCTTTCTGAAGCTGCGG+AGG 0.494418 2.1:+72074919 MS.gene047515:CDS
CATGGAGGTTCAAGTGGAAT+CGG 0.496039 2.1:+72073251 MS.gene047515:CDS
ATCGGCACTGTTAAGGGCAG+TGG 0.498747 2.1:-72072192 None:intergenic
GTAAAAGCCTTTCCTTTGAA+CGG 0.516093 2.1:-72072216 None:intergenic
TCCACCCGGGATTTCTCTGA+AGG 0.519437 2.1:+72072939 MS.gene047515:CDS
GCCTGCAATTGCAGAAGGAA+AGG 0.519570 2.1:+72074871 MS.gene047515:CDS
GAACATTCAAGACCTGGATA+GGG 0.521615 2.1:-72072260 None:intergenic
GGGAATGATTTGTAAACCAC+AGG 0.522474 2.1:-72074899 None:intergenic
ATGACAAGCCGGCTATCTAA+GGG 0.522904 2.1:+72073012 MS.gene047515:CDS
CACTGTTAAGGGCAGTGGCA+TGG 0.523420 2.1:-72072187 None:intergenic
GGCAAGCGTCTCACTGTACA+AGG 0.526294 2.1:+72073848 MS.gene047515:CDS
CAAGGTGCAAGCCCCTATCC+AGG 0.528336 2.1:+72072248 MS.gene047515:CDS
TGAAGTTCTACAACTTCAAG+AGG 0.532066 2.1:+72072121 MS.gene047515:CDS
GATGTTATTCTTGATTGTAT+GGG 0.533185 2.1:+72073716 MS.gene047515:CDS
GCCTCCGCAGCTTCAGAAAG+AGG 0.533973 2.1:-72074920 None:intergenic
CAGGTTCATGGAGGTTCAAG+TGG 0.534759 2.1:+72073245 MS.gene047515:intron
ACCGGAAGAACTTGTCCCTC+AGG 0.537543 2.1:-72072916 None:intergenic
GGCTTGCACCTTGAGGGATA+GGG 0.540973 2.1:-72072238 None:intergenic
GGATAGGGGCTTGCACCTTG+AGG 0.546687 2.1:-72072245 None:intergenic
TCTGGAACTATTGAATCCGT+TGG 0.554523 2.1:+72072281 MS.gene047515:CDS
GCTGACTGCTTTCCATAAGC+CGG 0.555663 2.1:-72074946 None:intergenic
TGTGCTCTTCTAGCTGGAGG+TGG 0.560275 2.1:+72072871 MS.gene047515:CDS
AAGGAAGAAACTGGCGGACA+AGG 0.566694 2.1:+72073551 MS.gene047515:CDS
GTTTGGCCTGCAATTGCAGA+AGG 0.566773 2.1:+72074866 MS.gene047515:CDS
GCCGATACCGTTCAAAGGAA+AGG 0.568367 2.1:+72072209 MS.gene047515:CDS
AACAGAGGACTTTGTGGCAA+GGG 0.571801 2.1:+72073526 MS.gene047515:CDS
TGGAAAGATATTGCTTGTTG+TGG 0.579900 2.1:+72074973 MS.gene047515:CDS
GTTGGAAACGTTTATACCAA+CGG 0.581226 2.1:-72072297 None:intergenic
CCTCCGCAGCTTCAGAAAGA+GGG 0.582608 2.1:-72074919 None:intergenic
GTATGTGCTCTTCTAGCTGG+AGG 0.586099 2.1:+72072868 MS.gene047515:CDS
TGTAGAACTTCAGGTCCACC+TGG 0.592318 2.1:-72072110 None:intergenic
ATTCCCTCTTTCTGAAGCTG+CGG 0.593597 2.1:+72074916 MS.gene047515:CDS
AACATTCAAGACCTGGATAG+GGG 0.603099 2.1:-72072259 None:intergenic
AAGAGTATTGGAGCTGATGT+TGG 0.603468 2.1:+72073491 MS.gene047515:CDS
TAACAAATACTCTTGATCCT+CGG 0.609699 2.1:-72073301 None:intergenic
GTTCCAGAACATTCAAGACC+TGG 0.611446 2.1:-72072266 None:intergenic
AGAAGGAAAGGTTAAGCCTG+TGG 0.612996 2.1:+72074883 MS.gene047515:CDS
ACAGTGCCGATACCGTTCAA+AGG 0.616788 2.1:+72072204 MS.gene047515:CDS
AAGTTCTTCCGGTTCCACCC+GGG 0.628530 2.1:+72072926 MS.gene047515:CDS
TTTATTATCGGCTTTCAAGG+GGG 0.643203 2.1:+72073791 MS.gene047515:CDS
GACAAGCCGGCTATCTAAGG+GGG 0.645311 2.1:+72073014 MS.gene047515:CDS
GCATCCTTCAGAGAAATCCC+GGG 0.646597 2.1:-72072943 None:intergenic
ATCAATTCTCAGGTTCATGG+AGG 0.649634 2.1:+72073236 MS.gene047515:intron
AAACAGAGGACTTTGTGGCA+AGG 0.650379 2.1:+72073525 MS.gene047515:CDS
GCAGTTGTAATTACAACACC+AGG 0.653000 2.1:+72072092 MS.gene047515:CDS
TGAGAAAGTAGCAGTTCCTG+AGG 0.656971 2.1:+72072900 MS.gene047515:CDS
GAGAAAGTAGCAGTTCCTGA+GGG 0.670291 2.1:+72072901 MS.gene047515:CDS
TGACAAGCCGGCTATCTAAG+GGG 0.683970 2.1:+72073013 MS.gene047515:CDS
TCCTTCAGAGAAATCCCGGG+TGG 0.700414 2.1:-72072940 None:intergenic
CTGAGGTTGCATGTACTGTG+TGG 0.713501 2.1:+72072977 MS.gene047515:CDS
TGGTATCAATTACAAAACAG+AGG 0.714141 2.1:+72073511 MS.gene047515:CDS
ATTCAGATAGCTAAGTACCG+AGG 0.723680 2.1:+72073284 MS.gene047515:CDS
GTTGTAATTACAACACCAGG+TGG 0.740223 2.1:+72072095 MS.gene047515:CDS
AGGGTAAAGGAAGAAACTGG+CGG 0.742355 2.1:+72073545 MS.gene047515:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAATATTAAAAAATGAT+AGG - chr2.1:72074765-72074784 None:intergenic 10.0%
!! TTAAAAAACAAGATATTAAT+TGG - chr2.1:72073641-72073660 None:intergenic 10.0%
!!! ATTTTTTAATATTTGATTGT+GGG + chr2.1:72074768-72074787 MS.gene047515:intron 10.0%
!!! TTAATATCTTGTTTTTTAAT+TGG + chr2.1:72073642-72073661 MS.gene047515:intron 10.0%
!! ATATTCAATAATTGAATTGT+GGG + chr2.1:72072386-72072405 MS.gene047515:intron 15.0%
!! TATATTCAATAATTGAATTG+TGG + chr2.1:72072385-72072404 MS.gene047515:intron 15.0%
!!! CATTTTTTAATATTTGATTG+TGG + chr2.1:72074767-72074786 MS.gene047515:intron 15.0%
!! AAGTTAATACATCAACTATT+AGG - chr2.1:72073215-72073234 None:intergenic 20.0%
!! AATATAAAGAAAAACCCAAT+TGG - chr2.1:72072371-72072390 None:intergenic 20.0%
!! ATACTATATATATGATGTTC+TGG - chr2.1:72072450-72072469 None:intergenic 20.0%
!! ATATAGATCATATAATGTTG+AGG - chr2.1:72073614-72073633 None:intergenic 20.0%
!! TGAGTATCTAATATACAAAA+GGG - chr2.1:72073894-72073913 None:intergenic 20.0%
!!! TTAAGTGATGATAATTGTTT+TGG + chr2.1:72072598-72072617 MS.gene047515:intron 20.0%
!!! TTCATTCATTTTTTCCAATT+GGG + chr2.1:72072354-72072373 MS.gene047515:intron 20.0%
!!! TTTATAACAAGTTTTGTATG+AGG + chr2.1:72074668-72074687 MS.gene047515:intron 20.0%
!!! TTTCATTCATTTTTTCCAAT+TGG + chr2.1:72072353-72072372 MS.gene047515:intron 20.0%
! AAGGTGATTGGTATTTATAA+AGG - chr2.1:72074594-72074613 None:intergenic 25.0%
! AATCATACAACTTACCAATA+AGG - chr2.1:72073043-72073062 None:intergenic 25.0%
! ACGAAATAATAAAATAGACC+AGG - chr2.1:72073181-72073200 None:intergenic 25.0%
! ACTTTATGAAATTTCACCTA+AGG + chr2.1:72074063-72074082 MS.gene047515:intron 25.0%
! AGGTAATATTATCATTGATG+TGG + chr2.1:72073682-72073701 MS.gene047515:intron 25.0%
! ATGTTGCAAAATATCTACTA+AGG - chr2.1:72074319-72074338 None:intergenic 25.0%
! ATTGTGAGATTCATTATTGT+AGG - chr2.1:72074248-72074267 None:intergenic 25.0%
! CTAAAACTAGAACTAGAATA+AGG + chr2.1:72072552-72072571 MS.gene047515:intron 25.0%
! GATGTTATTCTTGATTGTAT+GGG + chr2.1:72073716-72073735 MS.gene047515:CDS 25.0%
! GTGAGTATCTAATATACAAA+AGG - chr2.1:72073895-72073914 None:intergenic 25.0%
! TAATATTATCATTGATGTGG+TGG + chr2.1:72073685-72073704 MS.gene047515:intron 25.0%
! TATTAACTTCATCAATTCTC+AGG + chr2.1:72073226-72073245 MS.gene047515:intron 25.0%
! TCAGTTTCACATTAAACATA+CGG - chr2.1:72073369-72073388 None:intergenic 25.0%
! TGATGTTATTCTTGATTGTA+TGG + chr2.1:72073715-72073734 MS.gene047515:CDS 25.0%
! TGTTATCTTGTGATTATGAA+TGG + chr2.1:72072814-72072833 MS.gene047515:intron 25.0%
!! ATCAAGATTTCTTTGATAGT+AGG - chr2.1:72073747-72073766 None:intergenic 25.0%
!! GTATTTTACAGAAAAGTTGT+CGG - chr2.1:72073074-72073093 None:intergenic 25.0%
!! TAGTAGATATTTTGCAACAT+TGG + chr2.1:72074319-72074338 MS.gene047515:intron 25.0%
!! TCTTTTTATTAGTGTGGTTA+TGG + chr2.1:72074733-72074752 MS.gene047515:intron 25.0%
!!! ATAGCTTAAATTTTGATGGA+AGG + chr2.1:72073765-72073784 MS.gene047515:CDS 25.0%
!!! CTTGATAGCTTAAATTTTGA+TGG + chr2.1:72073761-72073780 MS.gene047515:CDS 25.0%
!!! GTATTGATGATGACTATATA+AGG + chr2.1:72074268-72074287 MS.gene047515:intron 25.0%
!!! TATTGTAGGCTTTTTTTTCA+TGG - chr2.1:72074234-72074253 None:intergenic 25.0%
!!! TTTTTATTATCGGCTTTCAA+GGG + chr2.1:72073789-72073808 MS.gene047515:CDS 25.0%
AAAAATGATGTGTCTACAGA+AGG - chr2.1:72074624-72074643 None:intergenic 30.0%
AAATTGCTAATGTAAGTGAC+TGG - chr2.1:72074029-72074048 None:intergenic 30.0%
AACTAGAATAAGGTTCTGTT+TGG + chr2.1:72072562-72072581 MS.gene047515:intron 30.0%
AATTCACATCATGTTCACAT+AGG - chr2.1:72073582-72073601 None:intergenic 30.0%
AATTGAGTCAAATCAGTTAC+AGG + chr2.1:72074551-72074570 MS.gene047515:intron 30.0%
ATAAATACCAATCACCTTTG+TGG + chr2.1:72074596-72074615 MS.gene047515:intron 30.0%
ATATAATGTTGAGGAATGCT+TGG - chr2.1:72073605-72073624 None:intergenic 30.0%
ATGAAATTTCACCTAAGGTT+GGG + chr2.1:72074068-72074087 MS.gene047515:intron 30.0%
ATGAGTACTTCATTGTCTTT+AGG - chr2.1:72072161-72072180 None:intergenic 30.0%
ATTGAGTCAAATCAGTTACA+GGG + chr2.1:72074552-72074571 MS.gene047515:intron 30.0%
CTAATATGACCAACTTCAAT+CGG - chr2.1:72074419-72074438 None:intergenic 30.0%
CTGAAGTAGATAAGAATGTT+TGG + chr2.1:72074849-72074868 MS.gene047515:CDS 30.0%
GAGTAGGTAATTCAAATCAA+AGG - chr2.1:72072476-72072495 None:intergenic 30.0%
GTTTAATAATCAAGCTGAGT+AGG - chr2.1:72072492-72072511 None:intergenic 30.0%
TAACAAATACTCTTGATCCT+CGG - chr2.1:72073304-72073323 None:intergenic 30.0%
TATGAAATTTCACCTAAGGT+TGG + chr2.1:72074067-72074086 MS.gene047515:intron 30.0%
TATTCCAGATATTTCTTAGC+AGG + chr2.1:72073443-72073462 MS.gene047515:intron 30.0%
TGAATGGATATTATGATACG+AGG + chr2.1:72072830-72072849 MS.gene047515:intron 30.0%
TGCTTGTACAAGTAAAAACA+CGG + chr2.1:72073958-72073977 MS.gene047515:intron 30.0%
TGGTATCAATTACAAAACAG+AGG + chr2.1:72073511-72073530 MS.gene047515:CDS 30.0%
TTGCAAAATATCTACTAAGG+CGG - chr2.1:72074316-72074335 None:intergenic 30.0%
! AATTAACTACCGATTGAAGT+TGG + chr2.1:72074407-72074426 MS.gene047515:intron 30.0%
! AGCTTTTCCACAATTGAAAT+GGG + chr2.1:72074706-72074725 MS.gene047515:intron 30.0%
! GATGGAAGGCTTTTTATTAT+CGG + chr2.1:72073779-72073798 MS.gene047515:CDS 30.0%
! GGAAGTTCTTTTTATTAGTG+TGG + chr2.1:72074727-72074746 MS.gene047515:intron 30.0%
! TGTTCTGGTTATTATAGAAC+TGG - chr2.1:72072435-72072454 None:intergenic 30.0%
!! TCTGTAGACACATCATTTTT+AGG + chr2.1:72074624-72074643 MS.gene047515:intron 30.0%
!!! CTTTTTATTATCGGCTTTCA+AGG + chr2.1:72073788-72073807 MS.gene047515:CDS 30.0%
!!! TTTTATTATCGGCTTTCAAG+GGG + chr2.1:72073790-72073809 MS.gene047515:CDS 30.0%
AACACACTCATAAAGCTGTT+TGG - chr2.1:72072798-72072817 None:intergenic 35.0%
AACGTTTCCAACTGGAAAAT+CGG + chr2.1:72072308-72072327 MS.gene047515:CDS 35.0%
ACTACCTGCTAAGAAATATC+TGG - chr2.1:72073450-72073469 None:intergenic 35.0%
AGAACTTCCCATTTCAATTG+TGG - chr2.1:72074716-72074735 None:intergenic 35.0%
ATATTATGATACGAGGTGTG+TGG + chr2.1:72072837-72072856 MS.gene047515:intron 35.0%
CATTTCAATTGTGGAAAAGC+TGG - chr2.1:72074707-72074726 None:intergenic 35.0%
CGTGAAAGTTGTCATTCTAT+AGG - chr2.1:72074491-72074510 None:intergenic 35.0%
CTTTCACGAACTGTTATACT+CGG + chr2.1:72074503-72074522 MS.gene047515:intron 35.0%
GAAGACACTTCAATGCAAAA+TGG - chr2.1:72074175-72074194 None:intergenic 35.0%
GACTTCAACAACATGAAAAG+CGG - chr2.1:72073341-72073360 None:intergenic 35.0%
GCAGAAAACTAAACTTGAAG+AGG - chr2.1:72073927-72073946 None:intergenic 35.0%
GTAAAAGCCTTTCCTTTGAA+CGG - chr2.1:72072219-72072238 None:intergenic 35.0%
GTTGGAAACGTTTATACCAA+CGG - chr2.1:72072300-72072319 None:intergenic 35.0%
TCACTGTATAACTATCTTCC+TGG + chr2.1:72073160-72073179 MS.gene047515:intron 35.0%
TCATAAAGCTGTTTGGACTT+TGG - chr2.1:72072791-72072810 None:intergenic 35.0%
TCTTGAAGTTGTAGAACTTC+AGG - chr2.1:72072122-72072141 None:intergenic 35.0%
TCTTTGCAAGCATGGTTATT+GGG + chr2.1:72073103-72073122 MS.gene047515:intron 35.0%
TGAAGTTCTACAACTTCAAG+AGG + chr2.1:72072121-72072140 MS.gene047515:CDS 35.0%
TGTACAAGGTAATGCAGATT+CGG + chr2.1:72073862-72073881 MS.gene047515:intron 35.0%
TTACAAAACAGAGGACTTTG+TGG + chr2.1:72073520-72073539 MS.gene047515:CDS 35.0%
TTCATCAATTCTCAGGTTCA+TGG + chr2.1:72073233-72073252 MS.gene047515:intron 35.0%
TTGGTATAAACGTTTCCAAC+TGG + chr2.1:72072300-72072319 MS.gene047515:CDS 35.0%
! CAGCTTTTCCACAATTGAAA+TGG + chr2.1:72074705-72074724 MS.gene047515:intron 35.0%
! GTAGATCTACGTGCTTTATT+TGG + chr2.1:72073827-72073846 MS.gene047515:CDS 35.0%
! TGGAAAGATATTGCTTGTTG+TGG + chr2.1:72074973-72074992 MS.gene047515:CDS 35.0%
!! ACTTCATTGTCTTTAGGTTG+AGG - chr2.1:72072155-72072174 None:intergenic 35.0%
!! CTAGCTTTTTGCAAGAGTAT+TGG + chr2.1:72073479-72073498 MS.gene047515:CDS 35.0%
!! CTTCATTGTCTTTAGGTTGA+GGG - chr2.1:72072154-72072173 None:intergenic 35.0%
!! TCAAGAGTATTTGTTACTGC+AGG + chr2.1:72073308-72073327 MS.gene047515:CDS 35.0%
!! TTTATTATCGGCTTTCAAGG+GGG + chr2.1:72073791-72073810 MS.gene047515:CDS 35.0%
!! TTTTGCATTGAAGTGTCTTC+TGG + chr2.1:72074175-72074194 MS.gene047515:intron 35.0%
!!! ACGATCACAGCTTTATTTTC+AGG - chr2.1:72074827-72074846 None:intergenic 35.0%
AAATATCTGCCAACATCGCT+TGG - chr2.1:72073423-72073442 None:intergenic 40.0%
AACATTCAAGACCTGGATAG+GGG - chr2.1:72072262-72072281 None:intergenic 40.0%
AAGCTGTTTGGACTTTGGAT+TGG - chr2.1:72072786-72072805 None:intergenic 40.0%
AGAACATTCAAGACCTGGAT+AGG - chr2.1:72072264-72072283 None:intergenic 40.0%
ATATCATAAGCTCTGCCGAA+CGG + chr2.1:72072719-72072738 MS.gene047515:intron 40.0%
ATCAATTCTCAGGTTCATGG+AGG + chr2.1:72073236-72073255 MS.gene047515:intron 40.0%
ATCTAAGGGGGAAACCTTAT+TGG + chr2.1:72073026-72073045 MS.gene047515:CDS 40.0%
ATGGAAAGCAGTCAGCATAT+TGG + chr2.1:72074953-72074972 MS.gene047515:CDS 40.0%
ATTATCATTGATGTGGTGGC+AGG + chr2.1:72073689-72073708 MS.gene047515:intron 40.0%
CTCTTTGCAAGCATGGTTAT+TGG + chr2.1:72073102-72073121 MS.gene047515:intron 40.0%
CTTGAAATTCCAAGCGATGT+TGG + chr2.1:72073411-72073430 MS.gene047515:intron 40.0%
GAACATTCAAGACCTGGATA+GGG - chr2.1:72072263-72072282 None:intergenic 40.0%
GCAGTTGTAATTACAACACC+AGG + chr2.1:72072092-72072111 MS.gene047515:CDS 40.0%
GTTGTAATTACAACACCAGG+TGG + chr2.1:72072095-72072114 MS.gene047515:CDS 40.0%
TAGCATACTCTTTGCAAGCA+TGG + chr2.1:72073095-72073114 MS.gene047515:intron 40.0%
TATCCAGGTCTTGAATGTTC+TGG + chr2.1:72072263-72072282 MS.gene047515:CDS 40.0%
TCTACTAAGGCGGACAAAAA+TGG - chr2.1:72074306-72074325 None:intergenic 40.0%
TGGTTGCTTAGAGTTGTGTT+AGG + chr2.1:72073662-72073681 MS.gene047515:intron 40.0%
TTCATTTGACAGCACACTAC+AGG - chr2.1:72074384-72074403 None:intergenic 40.0%
! ATTCAGATAGCTAAGTACCG+AGG + chr2.1:72073284-72073303 MS.gene047515:CDS 40.0%
! CGACGATTTTTATGACAAGC+CGG + chr2.1:72073001-72073020 MS.gene047515:CDS 40.0%
! GGGAATGATTTGTAAACCAC+AGG - chr2.1:72074902-72074921 None:intergenic 40.0%
! TCTGGAACTATTGAATCCGT+TGG + chr2.1:72072281-72072300 MS.gene047515:CDS 40.0%
! TGATTGTGGGTTATGTTCAG+CGG + chr2.1:72074781-72074800 MS.gene047515:intron 40.0%
!! AAGAGTATTGGAGCTGATGT+TGG + chr2.1:72073491-72073510 MS.gene047515:CDS 40.0%
AAACAGAGGACTTTGTGGCA+AGG + chr2.1:72073525-72073544 MS.gene047515:CDS 45.0%
AACAGAGGACTTTGTGGCAA+GGG + chr2.1:72073526-72073545 MS.gene047515:CDS 45.0%
ACCTTTCCTTCTGCAATTGC+AGG - chr2.1:72074875-72074894 None:intergenic 45.0%
AGAAGGAAAGGTTAAGCCTG+TGG + chr2.1:72074883-72074902 MS.gene047515:CDS 45.0%
AGGGTAAAGGAAGAAACTGG+CGG + chr2.1:72073545-72073564 MS.gene047515:CDS 45.0%
ATGACAAGCCGGCTATCTAA+GGG + chr2.1:72073012-72073031 MS.gene047515:CDS 45.0%
CAACTGGAAAATCGGTGATC+AGG + chr2.1:72072316-72072335 MS.gene047515:CDS 45.0%
CATGGAGGTTCAAGTGGAAT+CGG + chr2.1:72073251-72073270 MS.gene047515:CDS 45.0%
GAGAAAGTAGCAGTTCCTGA+GGG + chr2.1:72072901-72072920 MS.gene047515:CDS 45.0%
GCAAGGGTAAAGGAAGAAAC+TGG + chr2.1:72073542-72073561 MS.gene047515:CDS 45.0%
GCCTTTCCTTTGAACGGTAT+CGG - chr2.1:72072213-72072232 None:intergenic 45.0%
GTCCACAATAGCTTACTGTG+TGG + chr2.1:72074463-72074482 MS.gene047515:intron 45.0%
GTTCCAGAACATTCAAGACC+TGG - chr2.1:72072269-72072288 None:intergenic 45.0%
TATGACAAGCCGGCTATCTA+AGG + chr2.1:72073011-72073030 MS.gene047515:CDS 45.0%
TGAGAAAGTAGCAGTTCCTG+AGG + chr2.1:72072900-72072919 MS.gene047515:CDS 45.0%
TGCATCCTTCAGAGAAATCC+CGG - chr2.1:72072947-72072966 None:intergenic 45.0%
TGCCACACAGTAAGCTATTG+TGG - chr2.1:72074468-72074487 None:intergenic 45.0%
!! AACGGTATCGGCACTGTTAA+GGG - chr2.1:72072201-72072220 None:intergenic 45.0%
!! ATTCCCTCTTTCTGAAGCTG+CGG + chr2.1:72074916-72074935 MS.gene047515:CDS 45.0%
!!! CTGATCACCGATTTTCCAGT+TGG - chr2.1:72072318-72072337 None:intergenic 45.0%
!!! GGATGCAGCTAGTTTTACTG+AGG + chr2.1:72072960-72072979 MS.gene047515:CDS 45.0%
AGGTTTCCCCCTTAGATAGC+CGG - chr2.1:72073023-72073042 None:intergenic 50.0%
ATTTCACCTAAGGTTGGGCG+CGG + chr2.1:72074073-72074092 MS.gene047515:intron 50.0%
CAGGTATGTGCTCTTCTAGC+TGG + chr2.1:72072865-72072884 MS.gene047515:intron 50.0%
CAGGTTCATGGAGGTTCAAG+TGG + chr2.1:72073245-72073264 MS.gene047515:intron 50.0%
CTGAGGTTGCATGTACTGTG+TGG + chr2.1:72072977-72072996 MS.gene047515:CDS 50.0%
GACAGCACACTACAGGAACA+AGG - chr2.1:72074377-72074396 None:intergenic 50.0%
GCATCCTTCAGAGAAATCCC+GGG - chr2.1:72072946-72072965 None:intergenic 50.0%
GCCGATACCGTTCAAAGGAA+AGG + chr2.1:72072209-72072228 MS.gene047515:CDS 50.0%
GCCTGCAATTGCAGAAGGAA+AGG + chr2.1:72074871-72074890 MS.gene047515:CDS 50.0%
GCTGACTGCTTTCCATAAGC+CGG - chr2.1:72074949-72074968 None:intergenic 50.0%
GGACTTTGTGGCAAGGGTAA+AGG + chr2.1:72073532-72073551 MS.gene047515:CDS 50.0%
GTTTGGCCTGCAATTGCAGA+AGG + chr2.1:72074866-72074885 MS.gene047515:CDS 50.0%
TCCTGAGGGACAAGTTCTTC+CGG + chr2.1:72072915-72072934 MS.gene047515:CDS 50.0%
TGACAAGCCGGCTATCTAAG+GGG + chr2.1:72073013-72073032 MS.gene047515:CDS 50.0%
TGTAGAACTTCAGGTCCACC+TGG - chr2.1:72072113-72072132 None:intergenic 50.0%
! AAGGAAGAAACTGGCGGACA+AGG + chr2.1:72073551-72073570 MS.gene047515:CDS 50.0%
! GGCTTTTACCCTATCCCTCA+AGG + chr2.1:72072230-72072249 MS.gene047515:CDS 50.0%
! GTATGTGCTCTTCTAGCTGG+AGG + chr2.1:72072868-72072887 MS.gene047515:CDS 50.0%
!! ACAGTGCCGATACCGTTCAA+AGG + chr2.1:72072204-72072223 MS.gene047515:CDS 50.0%
!! GAACGGTATCGGCACTGTTA+AGG - chr2.1:72072202-72072221 None:intergenic 50.0%
!! GAAGGTGCCACAAAGGTGAT+TGG - chr2.1:72074606-72074625 None:intergenic 50.0%
!! GCACTTCTTCTGAGACCGTT+CGG - chr2.1:72072737-72072756 None:intergenic 50.0%
!! GTCTACAGAAGGTGCCACAA+AGG - chr2.1:72074613-72074632 None:intergenic 50.0%
!! TCAAGGGGGTGTTTCTACAG+AGG + chr2.1:72073805-72073824 MS.gene047515:CDS 50.0%
AAGTTCTTCCGGTTCCACCC+GGG + chr2.1:72072926-72072945 MS.gene047515:CDS 55.0%
ACCGGAAGAACTTGTCCCTC+AGG - chr2.1:72072919-72072938 None:intergenic 55.0%
AGAGAAATCCCGGGTGGAAC+CGG - chr2.1:72072937-72072956 None:intergenic 55.0%
ATCGGCACTGTTAAGGGCAG+TGG - chr2.1:72072195-72072214 None:intergenic 55.0%
CAAGTTCTTCCGGTTCCACC+CGG + chr2.1:72072925-72072944 MS.gene047515:CDS 55.0%
CACTGTTAAGGGCAGTGGCA+TGG - chr2.1:72072190-72072209 None:intergenic 55.0%
CCTCCGCAGCTTCAGAAAGA+GGG - chr2.1:72074922-72074941 None:intergenic 55.0%
GACAAGCCGGCTATCTAAGG+GGG + chr2.1:72073014-72073033 MS.gene047515:CDS 55.0%
GATAGGGGCTTGCACCTTGA+GGG - chr2.1:72072247-72072266 None:intergenic 55.0%
GGCAAGCGTCTCACTGTACA+AGG + chr2.1:72073848-72073867 MS.gene047515:CDS 55.0%
GGCTTGCACCTTGAGGGATA+GGG - chr2.1:72072241-72072260 None:intergenic 55.0%
TACGAGGTGTGTGGCTTCAC+AGG + chr2.1:72072846-72072865 MS.gene047515:intron 55.0%
TCCACCCGGGATTTCTCTGA+AGG + chr2.1:72072939-72072958 MS.gene047515:CDS 55.0%
TCCTTCAGAGAAATCCCGGG+TGG - chr2.1:72072943-72072962 None:intergenic 55.0%
! TGTGCTCTTCTAGCTGGAGG+TGG + chr2.1:72072871-72072890 MS.gene047515:CDS 55.0%
! TGTGGGTTATGTTCAGCGGC+TGG + chr2.1:72074785-72074804 MS.gene047515:intron 55.0%
CAAGGTGCAAGCCCCTATCC+AGG + chr2.1:72072248-72072267 MS.gene047515:CDS 60.0%
GCCTCCGCAGCTTCAGAAAG+AGG - chr2.1:72074923-72074942 None:intergenic 60.0%
GGATAGGGGCTTGCACCTTG+AGG - chr2.1:72072248-72072267 None:intergenic 60.0%
GGGCTTGCACCTTGAGGGAT+AGG - chr2.1:72072242-72072261 None:intergenic 60.0%
!! CCCTCTTTCTGAAGCTGCGG+AGG + chr2.1:72074919-72074938 MS.gene047515:CDS 60.0%
ACCTAAGGTTGGGCGCGGAG+AGG + chr2.1:72074078-72074097 MS.gene047515:intron 65.0%
CTGAAGCTGCGGAGGCTCAC+CGG + chr2.1:72074927-72074946 MS.gene047515:CDS 65.0%
TCCTCTCCGCGCCCAACCTT+AGG - chr2.1:72074082-72074101 None:intergenic 65.0%
!! TGCGGAGGCTCACCGGCTTA+TGG + chr2.1:72074934-72074953 MS.gene047515:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 72072086 72075000 72072086 ID=MS.gene047515
chr2.1 mRNA 72072086 72075000 72072086 ID=MS.gene047515.t1;Parent=MS.gene047515
chr2.1 exon 72072086 72072337 72072086 ID=MS.gene047515.t1.exon1;Parent=MS.gene047515.t1
chr2.1 CDS 72072086 72072337 72072086 ID=cds.MS.gene047515.t1;Parent=MS.gene047515.t1
chr2.1 exon 72072868 72073047 72072868 ID=MS.gene047515.t1.exon2;Parent=MS.gene047515.t1
chr2.1 CDS 72072868 72073047 72072868 ID=cds.MS.gene047515.t1;Parent=MS.gene047515.t1
chr2.1 exon 72073248 72073329 72073248 ID=MS.gene047515.t1.exon3;Parent=MS.gene047515.t1
chr2.1 CDS 72073248 72073329 72073248 ID=cds.MS.gene047515.t1;Parent=MS.gene047515.t1
chr2.1 exon 72073465 72073572 72073465 ID=MS.gene047515.t1.exon4;Parent=MS.gene047515.t1
chr2.1 CDS 72073465 72073572 72073465 ID=cds.MS.gene047515.t1;Parent=MS.gene047515.t1
chr2.1 exon 72073711 72073869 72073711 ID=MS.gene047515.t1.exon5;Parent=MS.gene047515.t1
chr2.1 CDS 72073711 72073869 72073711 ID=cds.MS.gene047515.t1;Parent=MS.gene047515.t1
chr2.1 exon 72074801 72075000 72074801 ID=MS.gene047515.t1.exon6;Parent=MS.gene047515.t1
chr2.1 CDS 72074801 72075000 72074801 ID=cds.MS.gene047515.t1;Parent=MS.gene047515.t1
Gene Sequence

>MS.gene047515

ATGAAGGCAGTTGTAATTACAACACCAGGTGGACCTGAAGTTCTACAACTTCAAGAGGTTGATGACCCTCAACCTAAAGACAATGAAGTACTCATCAGAGTCCATGCCACTGCCCTTAACAGTGCCGATACCGTTCAAAGGAAAGGCTTTTACCCTATCCCTCAAGGTGCAAGCCCCTATCCAGGTCTTGAATGTTCTGGAACTATTGAATCCGTTGGTATAAACGTTTCCAACTGGAAAATCGGTGATCAGGTAGACATATAGCTTTTTCATTCATTTTTTCCAATTGGGTTTTTCTTTATATTCAATAATTGAATTGTGGGTCTCTAAAAAGTTTTAAGCTTTTCCAGTTCTATAATAACCAGAACATCATATATATAGTATATACCTTTGATTTGAATTACCTACTCAGCTTGATTATTAAACATTAGAATAATTACAATCTCTAAAGTTTCAGTCTTTATTACTAAAACTAGAACTAGAATAAGGTTCTGTTTGGATAAACAACTTGATTAAGTGATGATAATTGTTTTGGTATAAGCTATTTTTATATTAATAGATAAAATATATTAAACTGTTTTCATAAGCTATCTTAGAGAGCTTATGAAAATAAGCTAAAAACAGCTTAGATACATATCATAAGCTCTGCCGAACGGTCTCAGAAGAAGTGCTTATGTCAGTAGATAAACTTAAAAATCCAATCCAAAGTCCAAACAGCTTTATGAGTGTGTTATCTTGTGATTATGAATGGATATTATGATACGAGGTGTGTGGCTTCACAGGTATGTGCTCTTCTAGCTGGAGGTGGTTATGCTGAGAAAGTAGCAGTTCCTGAGGGACAAGTTCTTCCGGTTCCACCCGGGATTTCTCTGAAGGATGCAGCTAGTTTTACTGAGGTTGCATGTACTGTGTGGTCGACGATTTTTATGACAAGCCGGCTATCTAAGGGGGAAACCTTATTGGTAAGTTGTATGATTGTAATCAACCGACAACTTTTCTGTAAAATACATAGCATACTCTTTGCAAGCATGGTTATTGGGTATTTTGTCGTTTTTTGTTGACATGCTTTTGATCTCACTGTATAACTATCTTCCTGGTCTATTTTATTATTTCGTAGTAAGTGTAGCCTAATAGTTGATGTATTAACTTCATCAATTCTCAGGTTCATGGAGGTTCAAGTGGAATCGGAACATTTGCAATTCAGATAGCTAAGTACCGAGGATCAAGAGTATTTGTTACTGCAGGTTCAGTACCGCTTTTCATGTTGTTGAAGTCAGTTTCCGTATGTTTAATGTGAAACTGACGCTATTTCTTGTTTCTCACATCTTGAAATTCCAAGCGATGTTGGCAGATATTTTATTCCAGATATTTCTTAGCAGGTAGTGCAGAGAAGCTAGCTTTTTGCAAGAGTATTGGAGCTGATGTTGGTATCAATTACAAAACAGAGGACTTTGTGGCAAGGGTAAAGGAAGAAACTGGCGGACAAGGTATTACCTATGTGAACATGATGTGAATTCCAAGCATTCCTCAACATTATATGATCTATATTGTACCAATTAATATCTTGTTTTTTAATTGGTTGCTTAGAGTTGTGTTAGGTAATATTATCATTGATGTGGTGGCAGGTGTTGATGTTATTCTTGATTGTATGGGAGCATCCTACTATCAAAGAAATCTTGATAGCTTAAATTTTGATGGAAGGCTTTTTATTATCGGCTTTCAAGGGGGTGTTTCTACAGAGGTAGATCTACGTGCTTTATTTGGCAAGCGTCTCACTGTACAAGGTAATGCAGATTCGGATTATACCCTTTTGTATATTAGATACTCACTCAGTCGCTCCTCTTCAAGTTTAGTTTTCTGCATGTAAGTATTTGCTTGTACAAGTAAAAACACGGCTCGACATTCTATATATTAGAAGATGAAGAAATAAAAGTAAATAGCCAGTCACTTACATTAGCAATTTAAACAATACAACATACTTTATGAAATTTCACCTAAGGTTGGGCGCGGAGAGGAATGAAACTGCTTAAAATAGTCGACTGACTTCTTACAAATTTTGTTTTGTATACTTGTGATATATCTTTTTCCATTTTGCATTGAAGTGTCTTCTGGTTTTTTGTGCACATTTTAATATCACTTATAGCTCCATGAAAAAAAAGCCTACAATAATGAATCTCACAATGTATTGATGATGACTATATAAGGCAGCTTGAGTAACCATTTTTGTCCGCCTTAGTAGATATTTTGCAACATTGGCTGCTACGCATAAATAAAATTCTTGTAGTAAGCCTTGTTCCTGTAGTGTGCTGTCAAATGAAAACAATTAACTACCGATTGAAGTTGGTCATATTAGAATATAGCGTATAAGCTCACTACAGTCCACAATAGCTTACTGTGTGGCACCTATAGAATGACAACTTTCACGAACTGTTATACTCGGTGTAACTAACTAGAGATCTATAACTAATTGAGTCAAATCAGTTACAGGGATCAAGAGTTCTTTGACCTTTATAAATACCAATCACCTTTGTGGCACCTTCTGTAGACACATCATTTTTAGGCATCTGCTTTTGAATTTCATCTTTATAACAAGTTTTGTATGAGGATAGATTAGAGAACCAGCTTTTCCACAATTGAAATGGGAAGTTCTTTTTATTAGTGTGGTTATGGTATGTACCTATCATTTTTTAATATTTGATTGTGGGTTATGTTCAGCGGCTGGCTTGCGAAGTAGAAGTCCTGAAAATAAAGCTGTGATCGTTGCTGAAGTAGATAAGAATGTTTGGCCTGCAATTGCAGAAGGAAAGGTTAAGCCTGTGGTTTACAAATCATTCCCTCTTTCTGAAGCTGCGGAGGCTCACCGGCTTATGGAAAGCAGTCAGCATATTGGAAAGATATTGCTTGTTGTGGCATGA

Protein sequence

>MS.gene047515.t1

MKAVVITTPGGPEVLQLQEVDDPQPKDNEVLIRVHATALNSADTVQRKGFYPIPQGASPYPGLECSGTIESVGINVSNWKIGDQVCALLAGGGYAEKVAVPEGQVLPVPPGISLKDAASFTEVACTVWSTIFMTSRLSKGETLLVHGGSSGIGTFAIQIAKYRGSRVFVTAGSAEKLAFCKSIGADVGINYKTEDFVARVKEETGGQGVDVILDCMGASYYQRNLDSLNFDGRLFIIGFQGGVSTEVDLRALFGKRLTVQAAGLRSRSPENKAVIVAEVDKNVWPAIAEGKVKPVVYKSFPLSEAAEAHRLMESSQHIGKILLVVA