Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047652.t1 | XP_003611768.1 | 98 | 351 | 7 | 0 | 1 | 351 | 1 | 351 | 2.20E-200 | 708 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047652.t1 | Q9FV50 | 77.8 | 342 | 72 | 2 | 12 | 351 | 11 | 350 | 9.5e-152 | 537.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047652.t1 | G7K801 | 98.0 | 351 | 7 | 0 | 1 | 351 | 1 | 351 | 1.6e-200 | 708.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041727 | MS.gene047652 | PPI |
| MS.gene33973 | MS.gene047652 | PPI |
| MS.gene006028 | MS.gene047652 | PPI |
| MS.gene60814 | MS.gene047652 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047652.t1 | MTR_5g017630 | 98.006 | 351 | 7 | 0 | 1 | 351 | 1 | 351 | 0.0 | 722 |
| MS.gene047652.t1 | MTR_5g017630 | 98.020 | 303 | 6 | 0 | 1 | 303 | 1 | 303 | 0.0 | 620 |
| MS.gene047652.t1 | MTR_5g053940 | 58.449 | 361 | 135 | 4 | 1 | 351 | 1 | 356 | 1.34e-144 | 413 |
| MS.gene047652.t1 | MTR_5g053940 | 63.226 | 310 | 109 | 1 | 47 | 351 | 23 | 332 | 1.44e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047652.t1 | AT4G37040 | 77.778 | 342 | 72 | 2 | 12 | 351 | 11 | 350 | 0.0 | 545 |
| MS.gene047652.t1 | AT1G13270 | 60.390 | 308 | 117 | 2 | 49 | 351 | 62 | 369 | 3.49e-135 | 390 |
| MS.gene047652.t1 | AT3G25740 | 58.219 | 292 | 116 | 4 | 61 | 349 | 53 | 341 | 2.53e-117 | 343 |
| MS.gene047652.t1 | AT2G45240 | 48.561 | 278 | 137 | 2 | 78 | 349 | 106 | 383 | 2.56e-89 | 274 |
| MS.gene047652.t1 | AT1G13270 | 60.377 | 212 | 79 | 2 | 49 | 255 | 62 | 273 | 3.63e-84 | 256 |
| MS.gene047652.t1 | AT2G45240 | 46.977 | 215 | 109 | 1 | 78 | 287 | 106 | 320 | 6.22e-65 | 209 |
| MS.gene047652.t1 | AT3G25740 | 53.086 | 162 | 64 | 3 | 63 | 219 | 55 | 209 | 6.78e-44 | 152 |
Find 76 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTACCTCGATCACTTTC+TGG | 0.148121 | 5.3:+9936496 | MS.gene047652:CDS |
| TACAGAACCTATGCTGACTA+TGG | 0.239457 | 5.3:+9941771 | MS.gene047652:intron |
| TTCTGGAAGGCTTGCAGCTC+AGG | 0.248344 | 5.3:+9936717 | MS.gene047652:CDS |
| TGCTTTATCTAGGCATTCTT+TGG | 0.262562 | 5.3:-9939056 | None:intergenic |
| ACAGATGTGCATACACTCTT+TGG | 0.287821 | 5.3:-9937530 | None:intergenic |
| AGTGATCATGCAGATAAATA+TGG | 0.316494 | 5.3:+9939252 | MS.gene047652:intron |
| CCAATCTCTTATTCAATAGA+AGG | 0.322925 | 5.3:+9936524 | MS.gene047652:CDS |
| ATTGAGTGTATGAGAGCTTC+TGG | 0.324353 | 5.3:+9936700 | MS.gene047652:CDS |
| CACCATTATCAATTATCATT+TGG | 0.331640 | 5.3:-9937475 | None:intergenic |
| TTACTGAAGTGCAGAATAAC+TGG | 0.332632 | 5.3:-9939333 | None:intergenic |
| GGAGTGGAATACAAGAAAAT+TGG | 0.358013 | 5.3:+9939097 | MS.gene047652:CDS |
| TGGAGGCTTTGTTATGTCCT+TGG | 0.383263 | 5.3:-9936614 | None:intergenic |
| TACCCGTCTCCTCTTGGTTA+TGG | 0.385751 | 5.3:+9937500 | MS.gene047652:CDS |
| CACCAAATGATAATTGATAA+TGG | 0.386505 | 5.3:+9937473 | MS.gene047652:CDS |
| CCTTCTATTGAATAAGAGAT+TGG | 0.388798 | 5.3:-9936524 | None:intergenic |
| ACAACTTACATTTAGATAAA+CGG | 0.389802 | 5.3:-9937704 | None:intergenic |
| CCCCATCAGGTGTTATCAAA+AGG | 0.394761 | 5.3:-9941876 | None:intergenic |
| GGAGGCTTTGTTATGTCCTT+GGG | 0.396406 | 5.3:-9936613 | None:intergenic |
| GTGCAACAGTTTGTTGGCCA+TGG | 0.402876 | 5.3:+9939285 | MS.gene047652:CDS |
| ATATCGATATTGCTTTATCT+AGG | 0.407550 | 5.3:-9939066 | None:intergenic |
| CAATTGTCTTTCCACATCAC+TGG | 0.411722 | 5.3:-9941805 | None:intergenic |
| ACCTCAAGCGAACGTGAATC+TGG | 0.417194 | 5.3:-9937578 | None:intergenic |
| CATGCAGATAAATATGGATA+TGG | 0.420071 | 5.3:+9939258 | MS.gene047652:CDS |
| TGCAACAGTTTGTTGGCCAT+GGG | 0.424319 | 5.3:+9939286 | MS.gene047652:CDS |
| ACCTGAAGTACATGATGAAA+AGG | 0.457990 | 5.3:+9936675 | MS.gene047652:CDS |
| GAACATCTTACTGAATTGTT+CGG | 0.461558 | 5.3:-9939120 | None:intergenic |
| GTCATAATCTCAGCCCCATC+AGG | 0.462099 | 5.3:-9941889 | None:intergenic |
| CAGTGATGTGGAAAGACAAT+TGG | 0.469081 | 5.3:+9941806 | MS.gene047652:CDS |
| TGGACAGTTGTAACAGAAGA+TGG | 0.474162 | 5.3:+9941826 | MS.gene047652:CDS |
| CAGTTTGTTGGCCATGGGGT+TGG | 0.478716 | 5.3:+9939291 | MS.gene047652:CDS |
| CCTGAAGTACATGATGAAAA+GGG | 0.481951 | 5.3:+9936676 | MS.gene047652:CDS |
| CGCAATCCCTGGCGGAACCA+TGG | 0.485545 | 5.3:-9936647 | None:intergenic |
| GGAATAGTTGAGGAAGTGAT+TGG | 0.489316 | 5.3:-9936362 | None:intergenic |
| CTGTTAAAGTCTTCTTTCAC+CGG | 0.490926 | 5.3:+9936312 | MS.gene047652:CDS |
| GGTGCGTACCCGTCTCCTCT+TGG | 0.492621 | 5.3:+9937494 | MS.gene047652:CDS |
| GCTCAGGTTCTTCAGTATGC+TGG | 0.504254 | 5.3:+9936733 | MS.gene047652:CDS |
| GTAAAATCCATGGTTCCGCC+AGG | 0.509922 | 5.3:+9936640 | MS.gene047652:CDS |
| CCGTCTCCTCTTGGTTATGG+TGG | 0.510232 | 5.3:+9937503 | MS.gene047652:CDS |
| TTAAATCAAACCTTCACGAT+TGG | 0.513964 | 5.3:+9940004 | MS.gene047652:CDS |
| GGTGTTGTGCAACAGTTTGT+TGG | 0.514303 | 5.3:+9939279 | MS.gene047652:CDS |
| CCCATCAGGTGTTATCAAAA+GGG | 0.517184 | 5.3:-9941875 | None:intergenic |
| AATCGTAAACGCTTGAGACT+TGG | 0.519983 | 5.3:+9936565 | MS.gene047652:CDS |
| ATTTCATCAGTCGTTATGCC+TGG | 0.524254 | 5.3:-9937437 | None:intergenic |
| CAACTATTCCGTTACAGACA+AGG | 0.529560 | 5.3:+9936375 | MS.gene047652:CDS |
| ATCGATATGTGCACCTGGAG+TGG | 0.530627 | 5.3:+9939081 | MS.gene047652:CDS |
| TCAGGTCCACTCGCAATCCC+TGG | 0.530751 | 5.3:-9936658 | None:intergenic |
| ATAGAAACGCACCTTGACTA+AGG | 0.539069 | 5.3:-9936758 | None:intergenic |
| AAGTCTCAAGCGTTTACGAT+TGG | 0.542998 | 5.3:-9936563 | None:intergenic |
| TATGAATTGTAGGGTTATCA+TGG | 0.548429 | 5.3:+9938121 | MS.gene047652:intron |
| GCCTCCATATGTAAAATCCA+TGG | 0.558800 | 5.3:+9936630 | MS.gene047652:CDS |
| CCACCATAACCAAGAGGAGA+CGG | 0.567121 | 5.3:-9937503 | None:intergenic |
| ACCAGATTCACGTTCGCTTG+AGG | 0.570704 | 5.3:+9937577 | MS.gene047652:CDS |
| GGTTGAAACCTTGTCTGTAA+CGG | 0.574103 | 5.3:-9936383 | None:intergenic |
| CACCATAACCAAGAGGAGAC+GGG | 0.579998 | 5.3:-9937502 | None:intergenic |
| AAGAGAAGAGAACATGGCTA+TGG | 0.582836 | 5.3:+9936269 | None:intergenic |
| TTGCGGGGATGTTGATGATG+AGG | 0.585529 | 5.3:+9938165 | MS.gene047652:CDS |
| ACAGAACCTATGCTGACTAT+GGG | 0.591367 | 5.3:+9941772 | MS.gene047652:intron |
| AACGTGAATCTGGTATTCCA+TGG | 0.591774 | 5.3:-9937568 | None:intergenic |
| GTTCCGCCAGGGATTGCGAG+TGG | 0.597034 | 5.3:+9936652 | MS.gene047652:CDS |
| GTATGCTGGCACCTTAGTCA+AGG | 0.603231 | 5.3:+9936747 | MS.gene047652:CDS |
| GTGAATGAATGCATTTGCCA+TGG | 0.609251 | 5.3:+9937551 | MS.gene047652:CDS |
| AGTGTATGAGAGCTTCTGGA+AGG | 0.616849 | 5.3:+9936704 | MS.gene047652:CDS |
| TAAAATCCATGGTTCCGCCA+GGG | 0.622525 | 5.3:+9936641 | MS.gene047652:CDS |
| GCAGCGTAAGAATCGATCTC+CGG | 0.624358 | 5.3:-9936331 | None:intergenic |
| GCAATATCGATATGTGCACC+TGG | 0.626501 | 5.3:+9939076 | MS.gene047652:CDS |
| ATGCTGCCCATAGTCAGCAT+AGG | 0.627596 | 5.3:-9941778 | None:intergenic |
| TCCACGTCGAAAAGTTCCCA+AGG | 0.628745 | 5.3:+9936597 | MS.gene047652:CDS |
| TGTCTGTAACGGAATAGTTG+AGG | 0.629364 | 5.3:-9936372 | None:intergenic |
| CTGAAGTACATGATGAAAAG+GGG | 0.629440 | 5.3:+9936677 | MS.gene047652:CDS |
| CAGTGACACGCTGCTGCTCG+CGG | 0.632054 | 5.3:-9936292 | None:intergenic |
| GCAGCATCAATCCAGTGATG+TGG | 0.633825 | 5.3:+9941794 | MS.gene047652:CDS |
| ATAGTTGAGGAAGTGATTGG+TGG | 0.636650 | 5.3:-9936359 | None:intergenic |
| GCAACAGTTTGTTGGCCATG+GGG | 0.649120 | 5.3:+9939287 | MS.gene047652:CDS |
| GTTAAGCCAGAAAGTGATCG+AGG | 0.668909 | 5.3:-9936502 | None:intergenic |
| GGTCCACTCGCAATCCCTGG+CGG | 0.706269 | 5.3:-9936655 | None:intergenic |
| GGAAAACCACCATAACCAAG+AGG | 0.708028 | 5.3:-9937509 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAAATTATATATCT+TGG | + | chr5.3:9937619-9937638 | MS.gene047652:intron | 10.0% |
| !! | ATTGTAAAATTATATATCTT+GGG | + | chr5.3:9937620-9937639 | MS.gene047652:intron | 10.0% |
| !! | CAAATAAAATTCATTATATT+TGG | - | chr5.3:9938855-9938874 | None:intergenic | 10.0% |
| !!! | AATGTTTTCAATATAATATA+AGG | - | chr5.3:9939829-9939848 | None:intergenic | 10.0% |
| !!! | ATGTTTTCAATATAATATAA+GGG | - | chr5.3:9939828-9939847 | None:intergenic | 10.0% |
| !!! | ATTGGTAAAAATATTAATTT+TGG | + | chr5.3:9938365-9938384 | MS.gene047652:intron | 10.0% |
| !!! | TAAGTTGTATAATTTTTTTT+TGG | + | chr5.3:9937719-9937738 | MS.gene047652:intron | 10.0% |
| !!! | TTATCATTTTTAAAAATTGA+AGG | - | chr5.3:9939492-9939511 | None:intergenic | 10.0% |
| !! | AATTAAATTGTTGAAATGAT+TGG | + | chr5.3:9937354-9937373 | MS.gene047652:intron | 15.0% |
| !! | AATTCCAAAACATATAAAAA+TGG | - | chr5.3:9938046-9938065 | None:intergenic | 15.0% |
| !! | ATAACAAAATCTATAAATCT+TGG | - | chr5.3:9941709-9941728 | None:intergenic | 15.0% |
| !! | ATTCCAAAACATATAAAAAT+GGG | - | chr5.3:9938045-9938064 | None:intergenic | 15.0% |
| !!! | ATAAATATAGATTTTCAACA+CGG | - | chr5.3:9939432-9939451 | None:intergenic | 15.0% |
| !!! | ATTTAATTTTTTTCTTTACC+TGG | + | chr5.3:9941741-9941760 | MS.gene047652:intron | 15.0% |
| !!! | ATTTATGGTTTTATATTTTC+TGG | + | chr5.3:9938761-9938780 | MS.gene047652:intron | 15.0% |
| !!! | TATTTTGTTCTTTTAAAACA+TGG | + | chr5.3:9937938-9937957 | MS.gene047652:intron | 15.0% |
| !!! | TTCTTGTTATTTTTATTTTC+AGG | + | chr5.3:9939956-9939975 | MS.gene047652:intron | 15.0% |
| !! | AAAATGCAGAATTAAATAAC+AGG | - | chr5.3:9938276-9938295 | None:intergenic | 20.0% |
| !! | AAATATTGAATTGTGACATT+AGG | - | chr5.3:9940252-9940271 | None:intergenic | 20.0% |
| !! | AAATGCAGAATTAAATAACA+GGG | - | chr5.3:9938275-9938294 | None:intergenic | 20.0% |
| !! | AACAATTAGAATAAGTTGTA+AGG | - | chr5.3:9938885-9938904 | None:intergenic | 20.0% |
| !! | ACAACTTACATTTAGATAAA+CGG | - | chr5.3:9937707-9937726 | None:intergenic | 20.0% |
| !! | AGAAGAAGACAAAAAAATAT+AGG | + | chr5.3:9941380-9941399 | MS.gene047652:intron | 20.0% |
| !! | AGATATTTATTATCTTAGCA+GGG | + | chr5.3:9938612-9938631 | MS.gene047652:intron | 20.0% |
| !! | CATAACAATCTATATTGTAT+TGG | - | chr5.3:9940042-9940061 | None:intergenic | 20.0% |
| !! | CTTAAGTCTATATATAATCA+TGG | + | chr5.3:9941620-9941639 | MS.gene047652:intron | 20.0% |
| !! | TAATTGAAAAGAAGAGAAAA+TGG | - | chr5.3:9936427-9936446 | None:intergenic | 20.0% |
| !! | TAGATATTTATTATCTTAGC+AGG | + | chr5.3:9938611-9938630 | MS.gene047652:intron | 20.0% |
| !! | TATTAACTAACAAACATATG+AGG | + | chr5.3:9937248-9937267 | MS.gene047652:intron | 20.0% |
| !!! | ACACTAAAACTTGTTAAAAA+GGG | - | chr5.3:9940666-9940685 | None:intergenic | 20.0% |
| !!! | ATATCTGAAATTCAAAAACT+AGG | - | chr5.3:9938504-9938523 | None:intergenic | 20.0% |
| !!! | ATTTTGGATTTTAGATTACT+TGG | + | chr5.3:9938381-9938400 | MS.gene047652:intron | 20.0% |
| !!! | CAACTTATTCTAATTGTTTT+TGG | + | chr5.3:9938887-9938906 | MS.gene047652:intron | 20.0% |
| !!! | GAAAATAATGATTTTACTCT+TGG | + | chr5.3:9940809-9940828 | MS.gene047652:intron | 20.0% |
| !!! | GTTTTTCATATATAGAGTTA+AGG | + | chr5.3:9941584-9941603 | MS.gene047652:intron | 20.0% |
| !!! | TATTTTAATTATGATTGCAG+CGG | + | chr5.3:9936987-9937006 | MS.gene047652:intron | 20.0% |
| !!! | TGTATAATTTTTTTTTGGCA+TGG | + | chr5.3:9937724-9937743 | MS.gene047652:intron | 20.0% |
| !!! | TTAATTCATCTAGCTTATTT+TGG | + | chr5.3:9937986-9938005 | MS.gene047652:intron | 20.0% |
| !!! | TTATTTTTACTAGCTTATAG+TGG | - | chr5.3:9937083-9937102 | None:intergenic | 20.0% |
| !!! | TTTACAATTTAAGAGTTTTC+TGG | - | chr5.3:9937608-9937627 | None:intergenic | 20.0% |
| !!! | TTTACCAATATTTTGAAAAC+TGG | - | chr5.3:9938354-9938373 | None:intergenic | 20.0% |
| !!! | TTTTATATTTTCTGGTCAAT+AGG | + | chr5.3:9938769-9938788 | MS.gene047652:intron | 20.0% |
| !!! | TTTTCAATATAATATAAGGG+TGG | - | chr5.3:9939825-9939844 | None:intergenic | 20.0% |
| ! | AAAAAAATTACCAATCGTGA+AGG | - | chr5.3:9940017-9940036 | None:intergenic | 25.0% |
| ! | AAAACCATAAATGAATACCA+AGG | - | chr5.3:9938753-9938772 | None:intergenic | 25.0% |
| ! | AAACATACACCTAACAAATA+AGG | - | chr5.3:9941251-9941270 | None:intergenic | 25.0% |
| ! | AAACCATAAATGAATACCAA+GGG | - | chr5.3:9938752-9938771 | None:intergenic | 25.0% |
| ! | AAAGAAGAGAAAATGGAATT+AGG | - | chr5.3:9936420-9936439 | None:intergenic | 25.0% |
| ! | AAAGAGCTCAATTTCAATTT+GGG | - | chr5.3:9940949-9940968 | None:intergenic | 25.0% |
| ! | AAATAAGAAAGTAGAGATTG+AGG | - | chr5.3:9941055-9941074 | None:intergenic | 25.0% |
| ! | AAATGAATATTTCCAGAAAG+AGG | - | chr5.3:9939762-9939781 | None:intergenic | 25.0% |
| ! | AACAAATGGATATGAATTGT+AGG | + | chr5.3:9938111-9938130 | MS.gene047652:intron | 25.0% |
| ! | AACATACACCTAACAAATAA+GGG | - | chr5.3:9941250-9941269 | None:intergenic | 25.0% |
| ! | AATAAGAAAGTAGAGATTGA+GGG | - | chr5.3:9941054-9941073 | None:intergenic | 25.0% |
| ! | AATATAGGCTAAAGATTTAG+AGG | + | chr5.3:9941395-9941414 | MS.gene047652:intron | 25.0% |
| ! | ACAAAATCTATAAATCTTGG+AGG | - | chr5.3:9941706-9941725 | None:intergenic | 25.0% |
| ! | ACAAATGGATATGAATTGTA+GGG | + | chr5.3:9938112-9938131 | MS.gene047652:intron | 25.0% |
| ! | ATAAAACTTGTGCTTTGATT+TGG | + | chr5.3:9938082-9938101 | MS.gene047652:intron | 25.0% |
| ! | ATATCGATATTGCTTTATCT+AGG | - | chr5.3:9939069-9939088 | None:intergenic | 25.0% |
| ! | ATTAAGAGTTATTGCATTAG+AGG | + | chr5.3:9941356-9941375 | MS.gene047652:intron | 25.0% |
| ! | CACCAAATGATAATTGATAA+TGG | + | chr5.3:9937473-9937492 | MS.gene047652:CDS | 25.0% |
| ! | CACCATTATCAATTATCATT+TGG | - | chr5.3:9937478-9937497 | None:intergenic | 25.0% |
| ! | CATTCAAAACTTAATACCAT+AGG | - | chr5.3:9938702-9938721 | None:intergenic | 25.0% |
| ! | CTTGTGGAATGTAAAATATA+GGG | - | chr5.3:9939683-9939702 | None:intergenic | 25.0% |
| ! | GTTTGGATAAAATATGTGAA+CGG | - | chr5.3:9939859-9939878 | None:intergenic | 25.0% |
| ! | TAAAGAGCTCAATTTCAATT+TGG | - | chr5.3:9940950-9940969 | None:intergenic | 25.0% |
| ! | TATAACAGTATAAGCTAACA+GGG | - | chr5.3:9939721-9939740 | None:intergenic | 25.0% |
| ! | TATAGACTTAAGAGTCTATT+AGG | - | chr5.3:9941612-9941631 | None:intergenic | 25.0% |
| ! | TTCTGAATTTATGTGGAATA+AGG | - | chr5.3:9939175-9939194 | None:intergenic | 25.0% |
| ! | TTCTTTCACTACATAAAAGT+TGG | + | chr5.3:9939629-9939648 | MS.gene047652:intron | 25.0% |
| ! | TTTCATATACTCATTCCAAA+GGG | - | chr5.3:9938555-9938574 | None:intergenic | 25.0% |
| !! | ACATATGAGGTTGTTATTAT+TGG | + | chr5.3:9937261-9937280 | MS.gene047652:intron | 25.0% |
| !! | CAAAATTTGTAGAGTACTTT+GGG | + | chr5.3:9941121-9941140 | MS.gene047652:intron | 25.0% |
| !! | CGAATTTAAAACTGTTTGTT+TGG | + | chr5.3:9939788-9939807 | MS.gene047652:intron | 25.0% |
| !! | CTATATTTTACATTCCACAA+GGG | + | chr5.3:9939682-9939701 | MS.gene047652:intron | 25.0% |
| !! | TCAAAATTTGTAGAGTACTT+TGG | + | chr5.3:9941120-9941139 | MS.gene047652:intron | 25.0% |
| !! | TGTTTTGTGTTTATATGAGT+GGG | + | chr5.3:9939002-9939021 | MS.gene047652:intron | 25.0% |
| !! | TTTTCATATACTCATTCCAA+AGG | - | chr5.3:9938556-9938575 | None:intergenic | 25.0% |
| !!! | ATTAAGTTTTGAATGAGACA+CGG | + | chr5.3:9938707-9938726 | MS.gene047652:intron | 25.0% |
| !!! | ATTTTCTTTTATTTGCAGGA+TGG | + | chr5.3:9937658-9937677 | MS.gene047652:intron | 25.0% |
| !!! | CTTATTTTTGCTTTTTGTTC+GGG | + | chr5.3:9937754-9937773 | MS.gene047652:intron | 25.0% |
| !!! | GACACTAAAACTTGTTAAAA+AGG | - | chr5.3:9940667-9940686 | None:intergenic | 25.0% |
| !!! | GCTTATTTTTGCTTTTTGTT+CGG | + | chr5.3:9937753-9937772 | MS.gene047652:intron | 25.0% |
| !!! | GTTTAATGCACTTTTTGTAA+TGG | + | chr5.3:9938415-9938434 | MS.gene047652:intron | 25.0% |
| !!! | TAAACTTTTTGAAAACCCAT+CGG | + | chr5.3:9941175-9941194 | MS.gene047652:intron | 25.0% |
| !!! | TATTTATTTTACTGCTTACG+AGG | + | chr5.3:9939445-9939464 | MS.gene047652:intron | 25.0% |
| !!! | TGACATTTTCTTTTATTTGC+AGG | + | chr5.3:9937654-9937673 | MS.gene047652:intron | 25.0% |
| !!! | TTGCCCATTTTTATATGTTT+TGG | + | chr5.3:9938039-9938058 | MS.gene047652:intron | 25.0% |
| !!! | TTGTTTTGTGTTTATATGAG+TGG | + | chr5.3:9939001-9939020 | MS.gene047652:intron | 25.0% |
| !!! | TTTTCTTTCCCTTATTTGTT+AGG | + | chr5.3:9941239-9941258 | MS.gene047652:intron | 25.0% |
| AACTGCCTTTGAATTTACAT+AGG | + | chr5.3:9940549-9940568 | MS.gene047652:intron | 30.0% | |
| AATACCATAGGATATTCTAC+TGG | - | chr5.3:9938690-9938709 | None:intergenic | 30.0% | |
| ACAAACATAACTCTGAATAG+AGG | - | chr5.3:9939928-9939947 | None:intergenic | 30.0% | |
| ACATAAATTCAGAAAACCTC+TGG | + | chr5.3:9939181-9939200 | MS.gene047652:intron | 30.0% | |
| AGAAAATGGAATTAGGAAGA+AGG | - | chr5.3:9936413-9936432 | None:intergenic | 30.0% | |
| AGCTACTCTACTGTATTATA+TGG | + | chr5.3:9938583-9938602 | MS.gene047652:intron | 30.0% | |
| AGTGATCATGCAGATAAATA+TGG | + | chr5.3:9939252-9939271 | MS.gene047652:intron | 30.0% | |
| AGTTCATGATGTCTATATGA+GGG | + | chr5.3:9941199-9941218 | MS.gene047652:intron | 30.0% | |
| ATACAATTTCCAGGAATAAG+TGG | - | chr5.3:9938802-9938821 | None:intergenic | 30.0% | |
| ATGACTAAAAAAGACCCATT+TGG | - | chr5.3:9937135-9937154 | None:intergenic | 30.0% | |
| ATGATATTGTGCATAGACTA+AGG | + | chr5.3:9939571-9939590 | MS.gene047652:intron | 30.0% | |
| ATGATTATTGTTTGCAAAGC+TGG | + | chr5.3:9940073-9940092 | MS.gene047652:intron | 30.0% | |
| CAAATTTAAATTTGGCAGTG+TGG | - | chr5.3:9940438-9940457 | None:intergenic | 30.0% | |
| CACAATTACTCCAAAATAAG+TGG | - | chr5.3:9940526-9940545 | None:intergenic | 30.0% | |
| CACACTGCCAAATTTAAATT+TGG | + | chr5.3:9940436-9940455 | MS.gene047652:intron | 30.0% | |
| CATGCAGATAAATATGGATA+TGG | + | chr5.3:9939258-9939277 | MS.gene047652:CDS | 30.0% | |
| CCAATCTCTTATTCAATAGA+AGG | + | chr5.3:9936524-9936543 | MS.gene047652:CDS | 30.0% | |
| CCTTCTATTGAATAAGAGAT+TGG | - | chr5.3:9936527-9936546 | None:intergenic | 30.0% | |
| CCTTGTGGAATGTAAAATAT+AGG | - | chr5.3:9939684-9939703 | None:intergenic | 30.0% | |
| CGATCATAAATCATGTCTAT+AGG | - | chr5.3:9941432-9941451 | None:intergenic | 30.0% | |
| CTCACTAAAGCAAGTTTAAA+GGG | - | chr5.3:9941675-9941694 | None:intergenic | 30.0% | |
| CTTAGCCTATGTAAATTCAA+AGG | - | chr5.3:9940557-9940576 | None:intergenic | 30.0% | |
| CTTCATTCATTCTTTGTAAC+AGG | + | chr5.3:9936454-9936473 | MS.gene047652:intron | 30.0% | |
| GAACATCTTACTGAATTGTT+CGG | - | chr5.3:9939123-9939142 | None:intergenic | 30.0% | |
| GAATTCATTATGAAAACCTG+AGG | + | chr5.3:9938437-9938456 | MS.gene047652:intron | 30.0% | |
| GACCTGTATCAATCAAATAA+GGG | - | chr5.3:9939035-9939054 | None:intergenic | 30.0% | |
| GCAGCTTCCAAATTTAAATT+TGG | - | chr5.3:9940446-9940465 | None:intergenic | 30.0% | |
| GGCTTCTTTGTAAAGTTTAA+TGG | - | chr5.3:9939662-9939681 | None:intergenic | 30.0% | |
| GTATAACAGTATAAGCTAAC+AGG | - | chr5.3:9939722-9939741 | None:intergenic | 30.0% | |
| TAAACACAAAACAAATGACG+AGG | - | chr5.3:9938995-9939014 | None:intergenic | 30.0% | |
| TAGGTTCTGTAAAATTTACC+AGG | - | chr5.3:9941762-9941781 | None:intergenic | 30.0% | |
| TAGTTCATGATGTCTATATG+AGG | + | chr5.3:9941198-9941217 | MS.gene047652:intron | 30.0% | |
| TATCCCTTGGTATTCATTTA+TGG | + | chr5.3:9938746-9938765 | MS.gene047652:intron | 30.0% | |
| TATGAATTGTAGGGTTATCA+TGG | + | chr5.3:9938121-9938140 | MS.gene047652:intron | 30.0% | |
| TCTCACTAAAGCAAGTTTAA+AGG | - | chr5.3:9941676-9941695 | None:intergenic | 30.0% | |
| TGACCTGTATCAATCAAATA+AGG | - | chr5.3:9939036-9939055 | None:intergenic | 30.0% | |
| TGATATTGTGCATAGACTAA+GGG | + | chr5.3:9939572-9939591 | MS.gene047652:intron | 30.0% | |
| TTAAATCAAACCTTCACGAT+TGG | + | chr5.3:9940004-9940023 | MS.gene047652:CDS | 30.0% | |
| TTATGGGATATACAATTTCC+AGG | - | chr5.3:9938811-9938830 | None:intergenic | 30.0% | |
| TTCAGATATTGTGCTAACAA+AGG | + | chr5.3:9938515-9938534 | MS.gene047652:intron | 30.0% | |
| TTTGGTAAAACGTTAGTCAA+CGG | - | chr5.3:9938837-9938856 | None:intergenic | 30.0% | |
| ! | ACAATGTTGCATTTTATGAG+CGG | + | chr5.3:9941314-9941333 | MS.gene047652:intron | 30.0% |
| ! | AGAGGTTTTCTGAATTTATG+TGG | - | chr5.3:9939182-9939201 | None:intergenic | 30.0% |
| ! | CAATTTAAGAGTTTTCTGGA+AGG | - | chr5.3:9937604-9937623 | None:intergenic | 30.0% |
| ! | CAGTCCAGTTTTCAAAATAT+TGG | + | chr5.3:9938347-9938366 | MS.gene047652:intron | 30.0% |
| ! | CCTATATTTTACATTCCACA+AGG | + | chr5.3:9939681-9939700 | MS.gene047652:intron | 30.0% |
| ! | GAATGCTTTTATATTCCCTT+TGG | + | chr5.3:9938537-9938556 | MS.gene047652:intron | 30.0% |
| ! | GTTGTTATTATTGGTTAGTG+CGG | + | chr5.3:9937270-9937289 | MS.gene047652:intron | 30.0% |
| ! | GTTTTGTGTTTATATGAGTG+GGG | + | chr5.3:9939003-9939022 | MS.gene047652:intron | 30.0% |
| ! | TAAACTAGCTTATCTGCTAT+CGG | - | chr5.3:9936850-9936869 | None:intergenic | 30.0% |
| ! | TCAGATCATTTTCACCTTAA+AGG | + | chr5.3:9940902-9940921 | MS.gene047652:intron | 30.0% |
| ! | TTGTTATTATTGGTTAGTGC+GGG | + | chr5.3:9937271-9937290 | MS.gene047652:intron | 30.0% |
| !! | ATCACATTTTGAAGAAACTG+TGG | + | chr5.3:9941553-9941572 | MS.gene047652:intron | 30.0% |
| !! | TATATTTTCTGGTCAATAGG+AGG | + | chr5.3:9938772-9938791 | MS.gene047652:intron | 30.0% |
| !! | TGATTTGGTGATTGAACAAA+TGG | + | chr5.3:9938097-9938116 | MS.gene047652:intron | 30.0% |
| !! | TTGTTTTCTGTTGCATTGAT+TGG | + | chr5.3:9940117-9940136 | MS.gene047652:intron | 30.0% |
| !! | TTTTCAGGAAACAATGAAGA+TGG | + | chr5.3:9939971-9939990 | MS.gene047652:intron | 30.0% |
| !!! | AATTTTTTTTTGGCATGGCA+GGG | + | chr5.3:9937729-9937748 | MS.gene047652:intron | 30.0% |
| !!! | CTAACTGTTTTAATTGTGGA+TGG | + | chr5.3:9940688-9940707 | MS.gene047652:intron | 30.0% |
| !!! | TAATTTTTTTTTGGCATGGC+AGG | + | chr5.3:9937728-9937747 | MS.gene047652:intron | 30.0% |
| !!! | TGTTTTCTGTTGCATTGATT+GGG | + | chr5.3:9940118-9940137 | MS.gene047652:intron | 30.0% |
| !!! | TTAAGTTTTGAATGAGACAC+GGG | + | chr5.3:9938708-9938727 | MS.gene047652:intron | 30.0% |
| AAATAAACTATAAGCTCGCG+AGG | + | chr5.3:9937097-9937116 | MS.gene047652:intron | 35.0% | |
| AAATAAGTGGCTTACACACA+TGG | - | chr5.3:9940513-9940532 | None:intergenic | 35.0% | |
| AACAAAACCTTATTCCAGCA+GGG | - | chr5.3:9941493-9941512 | None:intergenic | 35.0% | |
| AAGGAAAGCGAAATGATGAA+AGG | - | chr5.3:9940298-9940317 | None:intergenic | 35.0% | |
| ACCTGAAGTACATGATGAAA+AGG | + | chr5.3:9936675-9936694 | MS.gene047652:CDS | 35.0% | |
| AGAAAAGCAATCACATCTGA+CGG | - | chr5.3:9939898-9939917 | None:intergenic | 35.0% | |
| AGGAAAGAGAGAATTTCTCA+AGG | - | chr5.3:9940317-9940336 | None:intergenic | 35.0% | |
| AGTTCACACGTCCAAAAATA+TGG | + | chr5.3:9940412-9940431 | MS.gene047652:intron | 35.0% | |
| ATTACAATCCTAAGACACGT+AGG | - | chr5.3:9937219-9937238 | None:intergenic | 35.0% | |
| ATTCAATCACCTAGCTTATC+TGG | - | chr5.3:9936882-9936901 | None:intergenic | 35.0% | |
| CAACAATATAGCACAAGAAG+AGG | - | chr5.3:9937873-9937892 | None:intergenic | 35.0% | |
| CATGTCTATAGGCAAACTAT+TGG | - | chr5.3:9941421-9941440 | None:intergenic | 35.0% | |
| CCTGAAGTACATGATGAAAA+GGG | + | chr5.3:9936676-9936695 | MS.gene047652:CDS | 35.0% | |
| CTAGCGCTTGGTAAAAATAA+TGG | + | chr5.3:9940778-9940797 | MS.gene047652:intron | 35.0% | |
| CTATCCAGTAGAATATCCTA+TGG | + | chr5.3:9938683-9938702 | MS.gene047652:intron | 35.0% | |
| CTCTTCTTGTGCTATATTGT+TGG | + | chr5.3:9937871-9937890 | MS.gene047652:intron | 35.0% | |
| CTGAAGTACATGATGAAAAG+GGG | + | chr5.3:9936677-9936696 | MS.gene047652:CDS | 35.0% | |
| CTGTTAAAGTCTTCTTTCAC+CGG | + | chr5.3:9936312-9936331 | MS.gene047652:CDS | 35.0% | |
| CTTGGTATGATTGAACAGTA+GGG | + | chr5.3:9940827-9940846 | MS.gene047652:intron | 35.0% | |
| GAATAAGGAAATGCAGGAAT+GGG | - | chr5.3:9939160-9939179 | None:intergenic | 35.0% | |
| GATATTGTGCATAGACTAAG+GGG | + | chr5.3:9939573-9939592 | MS.gene047652:intron | 35.0% | |
| GATTGAGGGAATGGAAAATT+TGG | - | chr5.3:9941040-9941059 | None:intergenic | 35.0% | |
| GCAGTGTTTGGTAAATTTAG+CGG | + | chr5.3:9936904-9936923 | MS.gene047652:intron | 35.0% | |
| GCGGAAATATTAGATGAGAT+AGG | + | chr5.3:9941333-9941352 | MS.gene047652:intron | 35.0% | |
| GGAGTGGAATACAAGAAAAT+TGG | + | chr5.3:9939097-9939116 | MS.gene047652:CDS | 35.0% | |
| GTATAAGGAAGAATATCCCT+TGG | + | chr5.3:9938733-9938752 | MS.gene047652:intron | 35.0% | |
| GTGATTGAATTTGCAGTGTT+TGG | + | chr5.3:9936892-9936911 | MS.gene047652:intron | 35.0% | |
| GTTGAAATTTCCAAGTGGAA+AGG | - | chr5.3:9940337-9940356 | None:intergenic | 35.0% | |
| TATAAGCTAAAGCAAGTTCC+AGG | + | chr5.3:9941074-9941093 | MS.gene047652:intron | 35.0% | |
| TATATAGAGGGTAGTGAAAG+TGG | + | chr5.3:9940714-9940733 | MS.gene047652:intron | 35.0% | |
| TATGTGGAATAAGGAAATGC+AGG | - | chr5.3:9939166-9939185 | None:intergenic | 35.0% | |
| TCTTGGTATGATTGAACAGT+AGG | + | chr5.3:9940826-9940845 | MS.gene047652:intron | 35.0% | |
| TCTTGTGCTATATTGTTGGA+GGG | + | chr5.3:9937875-9937894 | MS.gene047652:intron | 35.0% | |
| TGAAAATGATCTGACAGTGA+AGG | - | chr5.3:9940896-9940915 | None:intergenic | 35.0% | |
| TGAATATTTCCAGAAAGAGG+TGG | - | chr5.3:9939759-9939778 | None:intergenic | 35.0% | |
| TGAGGCTAAAAAACTAGTTC+AGG | + | chr5.3:9938183-9938202 | MS.gene047652:CDS | 35.0% | |
| TGATATATTCCACCTCTTTC+TGG | + | chr5.3:9939747-9939766 | MS.gene047652:intron | 35.0% | |
| TGATGAATCATATAGTCCAG+AGG | - | chr5.3:9939200-9939219 | None:intergenic | 35.0% | |
| TGCTTTATCTAGGCATTCTT+TGG | - | chr5.3:9939059-9939078 | None:intergenic | 35.0% | |
| TGGATGTTGAGATACTATTC+TGG | + | chr5.3:9938907-9938926 | MS.gene047652:intron | 35.0% | |
| TGTGGATGGTACTATATAGA+GGG | + | chr5.3:9940702-9940721 | MS.gene047652:intron | 35.0% | |
| TTACAATCCTAAGACACGTA+GGG | - | chr5.3:9937218-9937237 | None:intergenic | 35.0% | |
| TTACTGAAGTGCAGAATAAC+TGG | - | chr5.3:9939336-9939355 | None:intergenic | 35.0% | |
| TTCTTGTGCTATATTGTTGG+AGG | + | chr5.3:9937874-9937893 | MS.gene047652:intron | 35.0% | |
| TTGTGGATGGTACTATATAG+AGG | + | chr5.3:9940701-9940720 | MS.gene047652:intron | 35.0% | |
| ! | ACATCGACAACTTTCTTTTG+CGG | + | chr5.3:9938148-9938167 | MS.gene047652:CDS | 35.0% |
| ! | ACCATGGATTTTACATATGG+AGG | - | chr5.3:9936634-9936653 | None:intergenic | 35.0% |
| ! | ATTTTCTTGTATTCCACTCC+AGG | - | chr5.3:9939097-9939116 | None:intergenic | 35.0% |
| ! | CTCCCTTATTTGATTGATAC+AGG | + | chr5.3:9939030-9939049 | MS.gene047652:intron | 35.0% |
| ! | GATAGCTTTACAGTTTACGT+TGG | - | chr5.3:9938668-9938687 | None:intergenic | 35.0% |
| ! | GGAACCATGGATTTTACATA+TGG | - | chr5.3:9936637-9936656 | None:intergenic | 35.0% |
| ! | GGATTTTAGATTACTTGGTC+TGG | + | chr5.3:9938386-9938405 | MS.gene047652:intron | 35.0% |
| ! | TATCTGCTACTTCTCCTTTA+AGG | - | chr5.3:9940919-9940938 | None:intergenic | 35.0% |
| ! | TGTGTGTAAGCCACTTATTT+TGG | + | chr5.3:9940513-9940532 | MS.gene047652:intron | 35.0% |
| ! | TTGGACGTGTGAACTTTTAT+TGG | - | chr5.3:9940407-9940426 | None:intergenic | 35.0% |
| !! | ACGTTAGTCAACGGATTTTA+TGG | - | chr5.3:9938828-9938847 | None:intergenic | 35.0% |
| !! | ATTTTGAGAACATGACACCA+AGG | - | chr5.3:9941107-9941126 | None:intergenic | 35.0% |
| !! | CGTTAGTCAACGGATTTTAT+GGG | - | chr5.3:9938827-9938846 | None:intergenic | 35.0% |
| !! | TGTAGAGTACTTTGGGATTT+GGG | + | chr5.3:9941128-9941147 | MS.gene047652:intron | 35.0% |
| !! | TTGTAGAGTACTTTGGGATT+TGG | + | chr5.3:9941127-9941146 | MS.gene047652:intron | 35.0% |
| !! | TTTTGAGAACATGACACCAA+GGG | - | chr5.3:9941106-9941125 | None:intergenic | 35.0% |
| !!! | ATTTTTGCTTTTTGTTCGGG+TGG | + | chr5.3:9937757-9937776 | MS.gene047652:intron | 35.0% |
| !!! | GGCAAAAGTATTTTGAGGTT+TGG | - | chr5.3:9939876-9939895 | None:intergenic | 35.0% |
| !!! | GTCGCTAACTGTTTTAATTG+TGG | + | chr5.3:9940684-9940703 | MS.gene047652:intron | 35.0% |
| !!! | TAAGTTTTGAATGAGACACG+GGG | + | chr5.3:9938709-9938728 | MS.gene047652:intron | 35.0% |
| !!! | TTTTTGCTTTTTGTTCGGGT+GGG | + | chr5.3:9937758-9937777 | MS.gene047652:intron | 35.0% |
| AAATACACCCTACGTGTCTT+AGG | + | chr5.3:9937208-9937227 | MS.gene047652:intron | 40.0% | |
| AACCTGAGGAATTACAGAGA+AGG | + | chr5.3:9938451-9938470 | MS.gene047652:intron | 40.0% | |
| AACGTGAATCTGGTATTCCA+TGG | - | chr5.3:9937571-9937590 | None:intergenic | 40.0% | |
| AAGTCTCAAGCGTTTACGAT+TGG | - | chr5.3:9936566-9936585 | None:intergenic | 40.0% | |
| AAGTTCCAGGAATATACCCT+TGG | + | chr5.3:9941087-9941106 | MS.gene047652:intron | 40.0% | |
| AATCGTAAACGCTTGAGACT+TGG | + | chr5.3:9936565-9936584 | MS.gene047652:CDS | 40.0% | |
| AATGATCTGACAGTGAAGGA+TGG | - | chr5.3:9940892-9940911 | None:intergenic | 40.0% | |
| AATTGCAACAGCTCAGATGT+GGG | + | chr5.3:9940604-9940623 | MS.gene047652:intron | 40.0% | |
| ACAAAACCTTATTCCAGCAG+GGG | - | chr5.3:9941492-9941511 | None:intergenic | 40.0% | |
| ACAGATGTGCATACACTCTT+TGG | - | chr5.3:9937533-9937552 | None:intergenic | 40.0% | |
| ACCTGAGGAATTACAGAGAA+GGG | + | chr5.3:9938452-9938471 | MS.gene047652:intron | 40.0% | |
| AGACATCATGAACTACCGAT+GGG | - | chr5.3:9941193-9941212 | None:intergenic | 40.0% | |
| AGGAAGTAACGGTTACCAAA+TGG | + | chr5.3:9937117-9937136 | MS.gene047652:intron | 40.0% | |
| AGGAGAAGTAGCAGATATTG+TGG | + | chr5.3:9940922-9940941 | MS.gene047652:intron | 40.0% | |
| ATAGAAACGCACCTTGACTA+AGG | - | chr5.3:9936761-9936780 | None:intergenic | 40.0% | |
| ATAGTTGAGGAAGTGATTGG+TGG | - | chr5.3:9936362-9936381 | None:intergenic | 40.0% | |
| ATGCCTATCCATATGGTATG+TGG | - | chr5.3:9940488-9940507 | None:intergenic | 40.0% | |
| ATTGAGTGTATGAGAGCTTC+TGG | + | chr5.3:9936700-9936719 | MS.gene047652:CDS | 40.0% | |
| ATTTCATCAGTCGTTATGCC+TGG | - | chr5.3:9937440-9937459 | None:intergenic | 40.0% | |
| CAACAAAACCTTATTCCAGC+AGG | - | chr5.3:9941494-9941513 | None:intergenic | 40.0% | |
| CAACTATTCCGTTACAGACA+AGG | + | chr5.3:9936375-9936394 | MS.gene047652:CDS | 40.0% | |
| CAATTGTCTTTCCACATCAC+TGG | - | chr5.3:9941808-9941827 | None:intergenic | 40.0% | |
| CAGTGATGTGGAAAGACAAT+TGG | + | chr5.3:9941806-9941825 | MS.gene047652:CDS | 40.0% | |
| CCTGTTTATTAAGCTACGCA+AGG | - | chr5.3:9940359-9940378 | None:intergenic | 40.0% | |
| CCTTGCGTAGCTTAATAAAC+AGG | + | chr5.3:9940356-9940375 | MS.gene047652:intron | 40.0% | |
| CTAGGTAAGTCCTTACTCTA+AGG | - | chr5.3:9938486-9938505 | None:intergenic | 40.0% | |
| CTGACCATTGAACTAGTTCA+CGG | - | chr5.3:9938330-9938349 | None:intergenic | 40.0% | |
| CTTGTGCTATATTGTTGGAG+GGG | + | chr5.3:9937876-9937895 | MS.gene047652:intron | 40.0% | |
| GAAAAGCAATCACATCTGAC+GGG | - | chr5.3:9939897-9939916 | None:intergenic | 40.0% | |
| GAAAGTAGAGATTGAGGGAA+TGG | - | chr5.3:9941049-9941068 | None:intergenic | 40.0% | |
| GATACTACCCACATACCATA+TGG | + | chr5.3:9940477-9940496 | MS.gene047652:intron | 40.0% | |
| GCAAGGTTGAAATTTCCAAG+TGG | - | chr5.3:9940342-9940361 | None:intergenic | 40.0% | |
| GCCTCCATATGTAAAATCCA+TGG | + | chr5.3:9936630-9936649 | MS.gene047652:CDS | 40.0% | |
| GGAAGTAACGGTTACCAAAT+GGG | + | chr5.3:9937118-9937137 | MS.gene047652:intron | 40.0% | |
| GGAATAAGGAAATGCAGGAA+TGG | - | chr5.3:9939161-9939180 | None:intergenic | 40.0% | |
| GGAATAGTTGAGGAAGTGAT+TGG | - | chr5.3:9936365-9936384 | None:intergenic | 40.0% | |
| GGAATGGGAGAACAAATGAT+AGG | - | chr5.3:9939145-9939164 | None:intergenic | 40.0% | |
| GGGTCTAAATCCTTAGAGTA+AGG | + | chr5.3:9938473-9938492 | MS.gene047652:intron | 40.0% | |
| GGTTGAAACCTTGTCTGTAA+CGG | - | chr5.3:9936386-9936405 | None:intergenic | 40.0% | |
| GTGAATGAATGCATTTGCCA+TGG | + | chr5.3:9937551-9937570 | MS.gene047652:CDS | 40.0% | |
| GTTTATCTTCATGCCAACGA+TGG | + | chr5.3:9938211-9938230 | MS.gene047652:intron | 40.0% | |
| TAAGACACGTAGGGTGTATT+TGG | - | chr5.3:9937209-9937228 | None:intergenic | 40.0% | |
| TACCCACATACCATATGGAT+AGG | + | chr5.3:9940482-9940501 | MS.gene047652:intron | 40.0% | |
| TAGACATCATGAACTACCGA+TGG | - | chr5.3:9941194-9941213 | None:intergenic | 40.0% | |
| TAGCTGATACCAGATAAGCT+AGG | + | chr5.3:9936870-9936889 | MS.gene047652:intron | 40.0% | |
| TATAAGCTAACAGGGACCTT+TGG | - | chr5.3:9939713-9939732 | None:intergenic | 40.0% | |
| TATATCATCCTTGAAGCGAG+TGG | - | chr5.3:9936796-9936815 | None:intergenic | 40.0% | |
| TCGTTGGCATGAAGATAAAC+TGG | - | chr5.3:9938211-9938230 | None:intergenic | 40.0% | |
| TGAACCGTGAACTAGTTCAA+TGG | + | chr5.3:9938323-9938342 | MS.gene047652:intron | 40.0% | |
| TGCCTATCCATATGGTATGT+GGG | - | chr5.3:9940487-9940506 | None:intergenic | 40.0% | |
| TGGAATTAGGAAGAAGGAGA+AGG | - | chr5.3:9936407-9936426 | None:intergenic | 40.0% | |
| TGGACAGTTGTAACAGAAGA+TGG | + | chr5.3:9941826-9941845 | MS.gene047652:CDS | 40.0% | |
| TTCCACAAGGGAAAAACCAA+AGG | + | chr5.3:9939694-9939713 | MS.gene047652:intron | 40.0% | |
| TTCTCTCTTTCCTTTCCACT+TGG | + | chr5.3:9940324-9940343 | MS.gene047652:intron | 40.0% | |
| ! | ACAGAACCTATGCTGACTAT+GGG | + | chr5.3:9941772-9941791 | MS.gene047652:intron | 40.0% |
| ! | ATCGACAACTTTCTTTTGCG+GGG | + | chr5.3:9938150-9938169 | MS.gene047652:CDS | 40.0% |
| ! | CATCGACAACTTTCTTTTGC+GGG | + | chr5.3:9938149-9938168 | MS.gene047652:CDS | 40.0% |
| ! | CCCATCAGGTGTTATCAAAA+GGG | - | chr5.3:9941878-9941897 | None:intergenic | 40.0% |
| ! | CCCTTTTCATCATGTACTTC+AGG | - | chr5.3:9936679-9936698 | None:intergenic | 40.0% |
| ! | TACAGAACCTATGCTGACTA+TGG | + | chr5.3:9941771-9941790 | MS.gene047652:intron | 40.0% |
| ! | TGTCTGTAACGGAATAGTTG+AGG | - | chr5.3:9936375-9936394 | None:intergenic | 40.0% |
| ! | TTATTGGTTAGTGCGGGAAA+AGG | + | chr5.3:9937277-9937296 | MS.gene047652:intron | 40.0% |
| ! | TTTAACTTCTGTTGACAGCC+AGG | + | chr5.3:9937419-9937438 | MS.gene047652:intron | 40.0% |
| ! | TTTTACCAAGCGCTAGATCA+GGG | - | chr5.3:9940774-9940793 | None:intergenic | 40.0% |
| ! | TTTTTACCAAGCGCTAGATC+AGG | - | chr5.3:9940775-9940794 | None:intergenic | 40.0% |
| !! | ACCCTTTTGATAACACCTGA+TGG | + | chr5.3:9941874-9941893 | MS.gene047652:CDS | 40.0% |
| !! | CCCTTTTGATAACACCTGAT+GGG | + | chr5.3:9941875-9941894 | MS.gene047652:CDS | 40.0% |
| !! | CCTTTTGATAACACCTGATG+GGG | + | chr5.3:9941876-9941895 | MS.gene047652:CDS | 40.0% |
| !! | GTAGAGTACTTTGGGATTTG+GGG | + | chr5.3:9941129-9941148 | MS.gene047652:intron | 40.0% |
| !!! | TGACGGGCAAAAGTATTTTG+AGG | - | chr5.3:9939881-9939900 | None:intergenic | 40.0% |
| !!! | TTTTGCTTTTTGTTCGGGTG+GGG | + | chr5.3:9937759-9937778 | MS.gene047652:intron | 40.0% |
| AATAACAGGGCACAGACGTA+TGG | - | chr5.3:9938262-9938281 | None:intergenic | 45.0% | |
| AATGAGACACGGGGTGTATA+AGG | + | chr5.3:9938718-9938737 | MS.gene047652:intron | 45.0% | |
| ACTACTGTACTACTGAGACG+AGG | - | chr5.3:9937824-9937843 | None:intergenic | 45.0% | |
| AGTAACTAGGCCTACAGTAC+TGG | + | chr5.3:9938640-9938659 | MS.gene047652:intron | 45.0% | |
| AGTGTATGAGAGCTTCTGGA+AGG | + | chr5.3:9936704-9936723 | MS.gene047652:CDS | 45.0% | |
| ATAAGCTCGCGAGGAAGTAA+CGG | + | chr5.3:9937106-9937125 | MS.gene047652:intron | 45.0% | |
| ATAGACTAAGGGGTTGAAGG+AGG | + | chr5.3:9939583-9939602 | MS.gene047652:intron | 45.0% | |
| ATTGCAACAGCTCAGATGTG+GGG | + | chr5.3:9940605-9940624 | MS.gene047652:intron | 45.0% | |
| CAAAACCTTATTCCAGCAGG+GGG | - | chr5.3:9941491-9941510 | None:intergenic | 45.0% | |
| CAGTTACCTCGATCACTTTC+TGG | + | chr5.3:9936496-9936515 | MS.gene047652:CDS | 45.0% | |
| CATGGCAATGCCTATCCATA+TGG | - | chr5.3:9940495-9940514 | None:intergenic | 45.0% | |
| CCTGAGGAATTACAGAGAAG+GGG | + | chr5.3:9938453-9938472 | MS.gene047652:intron | 45.0% | |
| GAATTGCAACAGCTCAGATG+TGG | + | chr5.3:9940603-9940622 | MS.gene047652:intron | 45.0% | |
| GCAATATCGATATGTGCACC+TGG | + | chr5.3:9939076-9939095 | MS.gene047652:CDS | 45.0% | |
| GGAAAACCACCATAACCAAG+AGG | - | chr5.3:9937512-9937531 | None:intergenic | 45.0% | |
| GTTAAGCCAGAAAGTGATCG+AGG | - | chr5.3:9936505-9936524 | None:intergenic | 45.0% | |
| TAAAATCCATGGTTCCGCCA+GGG | + | chr5.3:9936641-9936660 | MS.gene047652:CDS | 45.0% | |
| TAGCAGGGCAGTAAGTAACT+AGG | + | chr5.3:9938627-9938646 | MS.gene047652:intron | 45.0% | |
| TGCATAGACTAAGGGGTTGA+AGG | + | chr5.3:9939580-9939599 | MS.gene047652:intron | 45.0% | |
| TGCTATATTGTTGGAGGGGA+CGG | + | chr5.3:9937880-9937899 | MS.gene047652:intron | 45.0% | |
| ! | AGGACATAAGCGTTGTAAGC+AGG | - | chr5.3:9937853-9937872 | None:intergenic | 45.0% |
| ! | CCCCATCAGGTGTTATCAAA+AGG | - | chr5.3:9941879-9941898 | None:intergenic | 45.0% |
| ! | GGACATAAGCGTTGTAAGCA+GGG | - | chr5.3:9937852-9937871 | None:intergenic | 45.0% |
| ! | GGTGTTGTGCAACAGTTTGT+TGG | + | chr5.3:9939279-9939298 | MS.gene047652:CDS | 45.0% |
| ! | TGACACCAAGGGTATATTCC+TGG | - | chr5.3:9941095-9941114 | None:intergenic | 45.0% |
| ! | TGGCAGTGTGGCCATATTTT+TGG | - | chr5.3:9940426-9940445 | None:intergenic | 45.0% |
| !! | GGAGGCTTTGTTATGTCCTT+GGG | - | chr5.3:9936616-9936635 | None:intergenic | 45.0% |
| !! | TGCAACAGTTTGTTGGCCAT+GGG | + | chr5.3:9939286-9939305 | MS.gene047652:CDS | 45.0% |
| !! | TGGAGGCTTTGTTATGTCCT+TGG | - | chr5.3:9936617-9936636 | None:intergenic | 45.0% |
| !!! | GACCTTTGGTTTTTCCCTTG+TGG | - | chr5.3:9939699-9939718 | None:intergenic | 45.0% |
| AACAGCTCAGATGTGGGGAA+GGG | + | chr5.3:9940610-9940629 | MS.gene047652:intron | 50.0% | |
| ACCAGATTCACGTTCGCTTG+AGG | + | chr5.3:9937577-9937596 | MS.gene047652:CDS | 50.0% | |
| ACCTCAAGCGAACGTGAATC+TGG | - | chr5.3:9937581-9937600 | None:intergenic | 50.0% | |
| AGAGGGTAGTGAAAGTGGAG+TGG | + | chr5.3:9940719-9940738 | MS.gene047652:intron | 50.0% | |
| AGCAGGGGGAATCAGCTATA+TGG | - | chr5.3:9941477-9941496 | None:intergenic | 50.0% | |
| ATCGATATGTGCACCTGGAG+TGG | + | chr5.3:9939081-9939100 | MS.gene047652:CDS | 50.0% | |
| ATGCTGCCCATAGTCAGCAT+AGG | - | chr5.3:9941781-9941800 | None:intergenic | 50.0% | |
| CACCAAATCACAGCCATCGT+TGG | - | chr5.3:9938227-9938246 | None:intergenic | 50.0% | |
| CACCATAACCAAGAGGAGAC+GGG | - | chr5.3:9937505-9937524 | None:intergenic | 50.0% | |
| CCACCATAACCAAGAGGAGA+CGG | - | chr5.3:9937506-9937525 | None:intergenic | 50.0% | |
| CCCCTTCTCTGTAATTCCTC+AGG | - | chr5.3:9938456-9938475 | None:intergenic | 50.0% | |
| GAAAAACACGTCCAACCCCA+TGG | - | chr5.3:9939305-9939324 | None:intergenic | 50.0% | |
| GAAAGTGGAGTGGAGTGGAA+TGG | + | chr5.3:9940729-9940748 | MS.gene047652:intron | 50.0% | |
| GCAGCATCAATCCAGTGATG+TGG | + | chr5.3:9941794-9941813 | MS.gene047652:CDS | 50.0% | |
| GCAGCGTAAGAATCGATCTC+CGG | - | chr5.3:9936334-9936353 | None:intergenic | 50.0% | |
| GCTCAGGTTCTTCAGTATGC+TGG | + | chr5.3:9936733-9936752 | MS.gene047652:CDS | 50.0% | |
| GTAAAATCCATGGTTCCGCC+AGG | + | chr5.3:9936640-9936659 | MS.gene047652:CDS | 50.0% | |
| GTAGTGAAAGTGGAGTGGAG+TGG | + | chr5.3:9940724-9940743 | MS.gene047652:intron | 50.0% | |
| GTATGCTGGCACCTTAGTCA+AGG | + | chr5.3:9936747-9936766 | MS.gene047652:CDS | 50.0% | |
| GTCATAATCTCAGCCCCATC+AGG | - | chr5.3:9941892-9941911 | None:intergenic | 50.0% | |
| TACCCGTCTCCTCTTGGTTA+TGG | + | chr5.3:9937500-9937519 | MS.gene047652:CDS | 50.0% | |
| TACGTTGGCACCAGTACTGT+AGG | - | chr5.3:9938653-9938672 | None:intergenic | 50.0% | |
| TATATTGTTGGAGGGGACGG+AGG | + | chr5.3:9937883-9937902 | MS.gene047652:intron | 50.0% | |
| TCCACGTCGAAAAGTTCCCA+AGG | + | chr5.3:9936597-9936616 | MS.gene047652:CDS | 50.0% | |
| TGATTCCCCCTGCTGGAATA+AGG | + | chr5.3:9941483-9941502 | MS.gene047652:intron | 50.0% | |
| TGCCAACGATGGCTGTGATT+TGG | + | chr5.3:9938222-9938241 | MS.gene047652:intron | 50.0% | |
| ! | ATATAGCTGATTCCCCCTGC+TGG | + | chr5.3:9941476-9941495 | MS.gene047652:intron | 50.0% |
| ! | GGAGGTGTACCACTTATTCC+TGG | + | chr5.3:9938790-9938809 | MS.gene047652:intron | 50.0% |
| ! | TCCTTGGGAACTTTTCGACG+TGG | - | chr5.3:9936601-9936620 | None:intergenic | 50.0% |
| !! | CTTTTTCGCCACTCGCTTCA+AGG | + | chr5.3:9936785-9936804 | MS.gene047652:intron | 50.0% |
| !! | GCAACAGTTTGTTGGCCATG+GGG | + | chr5.3:9939287-9939306 | MS.gene047652:CDS | 50.0% |
| !! | GTGCAACAGTTTGTTGGCCA+TGG | + | chr5.3:9939285-9939304 | MS.gene047652:CDS | 50.0% |
| !! | TTGCGGGGATGTTGATGATG+AGG | + | chr5.3:9938165-9938184 | MS.gene047652:CDS | 50.0% |
| ACAGCTCAGATGTGGGGAAG+GGG | + | chr5.3:9940611-9940630 | MS.gene047652:intron | 55.0% | |
| ACTAAGGGGTTGAAGGAGGC+AGG | + | chr5.3:9939587-9939606 | MS.gene047652:intron | 55.0% | |
| CAACAGCTCAGATGTGGGGA+AGG | + | chr5.3:9940609-9940628 | MS.gene047652:intron | 55.0% | |
| CCGTCTCCTCTTGGTTATGG+TGG | + | chr5.3:9937503-9937522 | MS.gene047652:CDS | 55.0% | |
| CTAAGGGGTTGAAGGAGGCA+GGG | + | chr5.3:9939588-9939607 | MS.gene047652:intron | 55.0% | |
| TAAGGGGTTGAAGGAGGCAG+GGG | + | chr5.3:9939589-9939608 | MS.gene047652:intron | 55.0% | |
| TGACTCCCTGATCTAGCGCT+TGG | + | chr5.3:9940766-9940785 | MS.gene047652:intron | 55.0% | |
| ! | CTTTTTGTTCGGGTGGGGAG+GGG | + | chr5.3:9937764-9937783 | MS.gene047652:intron | 55.0% |
| ! | GCTTTTTGTTCGGGTGGGGA+GGG | + | chr5.3:9937763-9937782 | MS.gene047652:intron | 55.0% |
| ! | TTCTGGAAGGCTTGCAGCTC+AGG | + | chr5.3:9936717-9936736 | MS.gene047652:CDS | 55.0% |
| ! | TTTTTGTTCGGGTGGGGAGG+GGG | + | chr5.3:9937765-9937784 | MS.gene047652:intron | 55.0% |
| !! | CAGTTTGTTGGCCATGGGGT+TGG | + | chr5.3:9939291-9939310 | MS.gene047652:CDS | 55.0% |
| !! | TGCTTTTTGTTCGGGTGGGG+AGG | + | chr5.3:9937762-9937781 | MS.gene047652:intron | 55.0% |
| GGTTGAAGGAGGCAGGGGTT+TGG | + | chr5.3:9939594-9939613 | MS.gene047652:intron | 60.0% | |
| TCAGGTCCACTCGCAATCCC+TGG | - | chr5.3:9936661-9936680 | None:intergenic | 60.0% | |
| ! | AGATGTGGGGAAGGGGTGCA+TGG | + | chr5.3:9940618-9940637 | MS.gene047652:intron | 60.0% |
| ! | GATGTGGGGAAGGGGTGCAT+GGG | + | chr5.3:9940619-9940638 | MS.gene047652:intron | 60.0% |
| CAGTGACACGCTGCTGCTCG+CGG | - | chr5.3:9936295-9936314 | None:intergenic | 65.0% | |
| CGCAATCCCTGGCGGAACCA+TGG | - | chr5.3:9936650-9936669 | None:intergenic | 65.0% | |
| GGTCCACTCGCAATCCCTGG+CGG | - | chr5.3:9936658-9936677 | None:intergenic | 65.0% | |
| GGTGCGTACCCGTCTCCTCT+TGG | + | chr5.3:9937494-9937513 | MS.gene047652:CDS | 65.0% | |
| GTTCCGCCAGGGATTGCGAG+TGG | + | chr5.3:9936652-9936671 | MS.gene047652:CDS | 65.0% | |
| TGTTGGAGGGGACGGAGGCT+AGG | + | chr5.3:9937888-9937907 | MS.gene047652:intron | 65.0% | |
| ! | GGTGGGGAGGGGGACTAGCA+TGG | + | chr5.3:9937775-9937794 | MS.gene047652:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 9936282 | 9941921 | 9936282 | ID=MS.gene047652 |
| chr5.3 | mRNA | 9936282 | 9941921 | 9936282 | ID=MS.gene047652.t1;Parent=MS.gene047652 |
| chr5.3 | exon | 9936282 | 9936396 | 9936282 | ID=MS.gene047652.t1.exon1;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9936282 | 9936396 | 9936282 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9936476 | 9936768 | 9936476 | ID=MS.gene047652.t1.exon2;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9936476 | 9936768 | 9936476 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9937437 | 9937598 | 9937437 | ID=MS.gene047652.t1.exon3;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9937437 | 9937598 | 9937437 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9937676 | 9937717 | 9937676 | ID=MS.gene047652.t1.exon4;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9937676 | 9937717 | 9937676 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9938133 | 9938204 | 9938133 | ID=MS.gene047652.t1.exon5;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9938133 | 9938204 | 9938133 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9939052 | 9939131 | 9939052 | ID=MS.gene047652.t1.exon6;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9939052 | 9939131 | 9939052 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9939254 | 9939351 | 9939254 | ID=MS.gene047652.t1.exon7;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9939254 | 9939351 | 9939254 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9939978 | 9940025 | 9939978 | ID=MS.gene047652.t1.exon8;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9939978 | 9940025 | 9939978 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| chr5.3 | exon | 9941776 | 9941921 | 9941776 | ID=MS.gene047652.t1.exon9;Parent=MS.gene047652.t1 |
| chr5.3 | CDS | 9941776 | 9941921 | 9941776 | ID=cds.MS.gene047652.t1;Parent=MS.gene047652.t1 |
| Gene Sequence |
| Protein sequence |
