AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047738

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047738.t1 MTR_5g019220 97.778 360 7 1 1 359 7 366 0.0 726
MS.gene047738.t1 MTR_1g021855 76.647 334 66 4 29 360 44 367 0.0 538
MS.gene047738.t1 MTR_8g078240 75.294 340 65 5 25 360 21 345 0.0 523
MS.gene047738.t1 MTR_3g111600 75.789 285 65 1 76 360 1 281 4.61e-165 462
MS.gene047738.t1 MTR_3g092310 58.589 326 112 3 28 353 31 333 2.53e-142 407
MS.gene047738.t1 MTR_5g036580 57.944 321 124 1 31 351 49 358 2.91e-142 409
MS.gene047738.t1 MTR_7g109210 56.075 321 120 3 31 351 51 350 6.37e-135 389
MS.gene047738.t1 MTR_6g008900 52.870 331 144 3 23 351 39 359 1.88e-133 385
MS.gene047738.t1 MTR_4g071620 52.870 331 144 3 23 351 39 359 1.88e-133 385
MS.gene047738.t1 MTR_7g094230 60.702 285 107 2 67 351 63 342 2.14e-130 377
MS.gene047738.t1 MTR_4g118030 54.462 325 121 4 31 354 42 340 7.78e-130 375
MS.gene047738.t1 MTR_1g089820 61.053 285 106 2 67 351 66 345 2.23e-125 364
MS.gene047738.t1 MTR_2g461670 34.375 192 115 7 159 349 395 576 7.75e-22 97.1
MS.gene047738.t1 MTR_4g109890 32.812 192 118 6 159 349 340 521 1.70e-20 93.2
MS.gene047738.t1 MTR_3g107930 25.085 295 182 8 92 356 372 657 1.37e-19 90.5
MS.gene047738.t1 MTR_3g107930 25.085 295 182 8 92 356 295 580 1.47e-19 90.5
MS.gene047738.t1 MTR_2g015550 30.660 212 139 6 132 342 311 515 1.31e-18 87.4
MS.gene047738.t1 MTR_8g092000 26.961 204 134 6 159 359 384 575 9.49e-18 85.1
MS.gene047738.t1 MTR_7g055600 28.643 199 133 6 159 357 238 427 1.32e-16 80.9
MS.gene047738.t1 MTR_7g057530 28.643 199 133 6 159 357 238 427 1.32e-16 80.9
MS.gene047738.t1 MTR_2g027740 28.492 179 116 5 159 334 471 640 1.33e-16 81.6
MS.gene047738.t1 MTR_7g012370 28.333 180 116 6 159 331 334 507 3.68e-16 80.1
MS.gene047738.t1 MTR_2g082650 26.244 221 144 9 139 349 186 397 6.35e-16 79.0
MS.gene047738.t1 MTR_2g082650 26.244 221 144 9 139 349 315 526 1.53e-15 78.2
MS.gene047738.t1 MTR_7g075840 27.778 198 134 5 159 356 468 656 2.00e-15 78.2
MS.gene047738.t1 MTR_8g033360 26.293 232 139 6 72 303 379 578 3.38e-15 77.4
MS.gene047738.t1 MTR_7g096160 28.079 203 134 8 157 356 453 646 8.29e-14 73.2
MS.gene047738.t1 MTR_6g016380 28.272 191 128 6 159 349 359 540 6.48e-13 70.1
MS.gene047738.t1 MTR_6g013840 28.283 198 126 7 159 349 329 517 2.05e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047738.t1 AT3G50760 67.806 351 89 5 11 358 9 338 1.20e-178 499
MS.gene047738.t1 AT1G19300 71.940 335 87 2 26 360 24 351 2.13e-173 486
MS.gene047738.t1 AT4G02130 63.636 286 100 2 66 351 60 341 7.55e-141 404
MS.gene047738.t1 AT4G02130 63.636 286 100 2 66 351 60 341 7.55e-141 404
MS.gene047738.t1 AT4G02130 63.636 286 100 2 66 351 60 341 7.55e-141 404
MS.gene047738.t1 AT1G70090 57.231 325 125 3 31 353 51 363 2.54e-139 401
MS.gene047738.t1 AT1G70090 57.231 325 125 3 31 353 51 363 2.54e-139 401
MS.gene047738.t1 AT1G24170 57.632 321 130 1 31 351 50 364 5.54e-139 400
MS.gene047738.t1 AT3G62660 62.937 286 99 2 66 351 77 355 3.66e-137 395
MS.gene047738.t1 AT3G28340 61.189 286 107 2 67 351 66 348 5.40e-134 387
MS.gene047738.t1 AT3G06260 54.012 324 124 3 31 354 46 344 9.04e-131 378
MS.gene047738.t1 AT1G02720 54.938 324 126 5 31 353 54 358 1.72e-130 378
MS.gene047738.t1 AT1G02720 54.938 324 126 5 31 353 54 358 1.72e-130 378
MS.gene047738.t1 AT1G13250 55.891 331 130 4 23 353 23 337 1.05e-127 370
MS.gene047738.t1 AT1G18580 32.973 185 116 5 159 342 342 519 3.35e-21 95.1
MS.gene047738.t1 AT5G47780 30.601 183 115 5 159 338 420 593 9.75e-20 90.9
MS.gene047738.t1 AT5G54690 29.293 198 124 8 159 349 331 519 2.04e-18 87.0
MS.gene047738.t1 AT3G61130 30.808 198 128 6 159 356 477 665 2.13e-18 87.0
MS.gene047738.t1 AT2G30575 26.515 264 162 8 85 331 332 580 1.73e-17 84.3
MS.gene047738.t1 AT3G58790 31.000 200 119 9 159 349 336 525 2.36e-17 83.6
MS.gene047738.t1 AT3G58790 31.000 200 119 9 159 349 204 393 2.60e-17 83.2
MS.gene047738.t1 AT3G01040 26.996 263 168 11 100 349 233 484 2.91e-17 83.2
MS.gene047738.t1 AT3G25140 29.648 199 122 5 159 351 363 549 3.54e-17 83.2
MS.gene047738.t1 AT3G01040 27.273 198 128 7 159 349 329 517 1.15e-16 81.6
MS.gene047738.t1 AT3G01040 27.273 198 128 7 159 349 329 517 1.15e-16 81.6
MS.gene047738.t1 AT4G38270 29.293 198 131 5 159 356 484 672 1.38e-16 81.6
MS.gene047738.t1 AT4G38270 29.293 198 131 5 159 356 480 668 1.40e-16 81.6
MS.gene047738.t1 AT1G06780 25.758 264 164 7 85 331 324 572 5.16e-16 79.7
MS.gene047738.t1 AT1G06780 25.758 264 164 7 85 331 311 559 7.19e-16 79.3
MS.gene047738.t1 AT2G46480 24.828 290 178 11 68 356 282 532 1.88e-14 75.1
MS.gene047738.t1 AT2G46480 24.828 290 178 11 68 356 295 545 1.88e-14 75.1
MS.gene047738.t1 AT2G20810 27.336 289 172 9 96 356 251 529 6.42e-14 73.2
MS.gene047738.t1 AT3G02350 30.890 191 123 6 159 349 365 546 7.83e-13 70.1
MS.gene047738.t1 AT2G46480 23.103 290 158 12 68 356 282 507 6.92e-11 63.9
MS.gene047738.t1 AT2G46480 23.103 290 158 12 68 356 295 520 9.55e-11 63.5

Find 101 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGAATGGAGGGACAATT+TGG 0.174407 5.1:+11202945 None:intergenic
TTCAACACTGAAACCATTTC+AGG 0.256685 5.1:-11202654 MS.gene047738:CDS
TTTGGGGAGTTGTAGAATTT+AGG 0.260300 5.1:+11202963 None:intergenic
CAGTGTTGAAGGGGTAGATT+TGG 0.310733 5.1:+11202667 None:intergenic
CTTTGTCGGGATTTGCATCC+AGG 0.313750 5.1:-11202138 MS.gene047738:CDS
AAATTCGCGTTGCAGTATTC+AGG 0.326521 5.1:+11202447 None:intergenic
TCTGAATGGAGGGACAATTT+GGG 0.354461 5.1:+11202946 None:intergenic
GCCCGGTGAGTTTACTTCAT+TGG 0.370138 5.1:-11202116 MS.gene047738:CDS
ATAACTTCCGTGGGCTTTGT+CGG 0.373003 5.1:-11202152 MS.gene047738:CDS
CGGTGGAATCAGCATGGGCT+TGG 0.398799 5.1:-11202180 MS.gene047738:CDS
AGTTTGAGAGGGTGGTGTTA+AGG 0.405578 5.1:+11202709 None:intergenic
AGTTGAGATTAGACCTGAAA+TGG 0.405668 5.1:+11202641 None:intergenic
TTGTCCGTTGGATGCATTGT+GGG 0.406608 5.1:-11202049 MS.gene047738:CDS
GGAGTTTCTAGAAGGTCATA+TGG 0.407544 5.1:+11202024 None:intergenic
ATCAACCGGAACTATCTTCC+CGG 0.416581 5.1:+11202206 None:intergenic
TGAAGTAAACTCACCGGGCC+TGG 0.418149 5.1:+11202120 None:intergenic
GTTTGAGAGGGTGGTGTTAA+GGG 0.424091 5.1:+11202710 None:intergenic
GGTGTTAAGGGTGACGGTGG+AGG 0.431560 5.1:+11202722 None:intergenic
TTACTTCAACACCGGAGTTA+TGG 0.435031 5.1:-11202352 MS.gene047738:CDS
TAAGAGATTGAAATGAGAAA+TGG 0.439928 5.1:+11203055 None:intergenic
GTTAAGGGTGACGGTGGAGG+TGG 0.448064 5.1:+11202725 None:intergenic
GTCTGTGTTTGTAGTTTGCT+CGG 0.448236 5.1:+11202902 None:intergenic
TAACTTCCGTGGGCTTTGTC+GGG 0.450103 5.1:-11202151 MS.gene047738:CDS
AGTTTGGAAGAAGGTTAGAT+AGG 0.454837 5.1:+11202571 None:intergenic
TTTCGCCGGGAAGATAGTTC+CGG 0.454984 5.1:-11202211 MS.gene047738:CDS
TCGGGATTTGCATCCAGGCC+CGG 0.457161 5.1:-11202133 MS.gene047738:CDS
TGAAATGGTTTCAGTGTTGA+AGG 0.460728 5.1:+11202656 None:intergenic
TGATTCCACCGATGATCAAC+CGG 0.464027 5.1:+11202192 None:intergenic
GTATTCAGGTGCAGCTAAAA+CGG 0.465805 5.1:+11202461 None:intergenic
AAAATACCTCCGCGGCTCAA+TGG 0.479599 5.1:-11202826 MS.gene047738:CDS
CTGGACAAGAGGAGTGTTGG+AGG 0.482458 5.1:+11202787 None:intergenic
GCAAGGGTAAACCGTGGGCC+AGG 0.482856 5.1:-11202089 MS.gene047738:CDS
GTGTTGGAGGACAGAGAGAA+TGG 0.483013 5.1:+11202800 None:intergenic
TTTCGTTAACATTCGCGACT+CGG 0.483633 5.1:-11202383 MS.gene047738:CDS
TGTGAACGCAGTTTGGAAGA+AGG 0.488871 5.1:+11202562 None:intergenic
GAGTTTCTAGAAGGTCATAT+GGG 0.496146 5.1:+11202025 None:intergenic
TGGAATCAGCATGGGCTTGG+CGG 0.504225 5.1:-11202177 MS.gene047738:CDS
GACGCAGATGACGGAATGGA+TGG 0.504947 5.1:-11202292 MS.gene047738:CDS
GCTTAGGCCTCAAGAGCAAA+AGG 0.505622 5.1:+11202003 None:intergenic
GAGCAAAAGGAGTTTCTAGA+AGG 0.510134 5.1:+11202016 None:intergenic
TTTCTGGACAAGAGGAGTGT+TGG 0.510190 5.1:+11202784 None:intergenic
CTCCAATGAAGTAAACTCAC+CGG 0.520250 5.1:+11202114 None:intergenic
TCGATGCGGCGGTGATGAAG+TGG 0.531772 5.1:+11202751 None:intergenic
TGCTAATCGTCCTTGTCCGT+TGG 0.534069 5.1:-11202061 MS.gene047738:CDS
AGTATGGGAATGAGTTTGAG+AGG 0.534447 5.1:+11202697 None:intergenic
AGATTATACGACGCAGATGA+CGG 0.536553 5.1:-11202301 MS.gene047738:CDS
GATTTAGCACGGTGGCGGAT+CGG 0.542241 5.1:-11202324 MS.gene047738:CDS
GAGGGTGGTGTTAAGGGTGA+CGG 0.544471 5.1:+11202716 None:intergenic
TTTACTTCATTGGAGTGGCA+AGG 0.550066 5.1:-11202106 MS.gene047738:CDS
TTACTTCATTGGAGTGGCAA+GGG 0.550996 5.1:-11202105 MS.gene047738:CDS
CTTGGCGGTGATAACTTCCG+TGG 0.555069 5.1:-11202162 MS.gene047738:CDS
GGTGGTGTTAAGGGTGACGG+TGG 0.555301 5.1:+11202719 None:intergenic
AAGGATTCGACCAAAACGTA+GGG 0.555532 5.1:+11202409 None:intergenic
TGGAGCTTCAGAAGAGAATG+AGG 0.556321 5.1:-11202272 MS.gene047738:CDS
TAATTTCGCGCGTAGTTGAG+AGG 0.556783 5.1:+11202594 None:intergenic
TTATTGATTTAGCACGGTGG+CGG 0.562924 5.1:-11202329 MS.gene047738:CDS
TTGGCGGTGATAACTTCCGT+GGG 0.565467 5.1:-11202161 MS.gene047738:CDS
GAAATGGTTTCAGTGTTGAA+GGG 0.565919 5.1:+11202657 None:intergenic
AGGACGATTAGCATCAAGCC+TGG 0.576371 5.1:+11202071 None:intergenic
ATCATCGACAAGAATGAGAT+CGG 0.576747 5.1:+11202521 None:intergenic
GTATGGGAATGAGTTTGAGA+GGG 0.578275 5.1:+11202698 None:intergenic
AGAATGAGGATCTATGAGCT+TGG 0.579068 5.1:-11202258 MS.gene047738:CDS
AGATAGTTCCGGTTGATCAT+CGG 0.581411 5.1:-11202200 MS.gene047738:CDS
CACAATGCATCCAACGGACA+AGG 0.585848 5.1:+11202051 None:intergenic
TGTCCATGTTGATGTCTGAA+TGG 0.591030 5.1:+11202932 None:intergenic
ATCATCGGTGGAATCAGCAT+GGG 0.592277 5.1:-11202185 MS.gene047738:CDS
GTGAGTTTACTTCATTGGAG+TGG 0.592963 5.1:-11202111 MS.gene047738:CDS
TGGGAATGAGTTTGAGAGGG+TGG 0.593840 5.1:+11202701 None:intergenic
AAATGGTTTCAGTGTTGAAG+GGG 0.597198 5.1:+11202658 None:intergenic
TTATGGTTATTGATTTAGCA+CGG 0.599419 5.1:-11202335 MS.gene047738:CDS
GATCATCGGTGGAATCAGCA+TGG 0.604146 5.1:-11202186 MS.gene047738:CDS
TAAATCAATAACCATAACTC+CGG 0.604422 5.1:+11202341 None:intergenic
CATGTTGATGTCTGAATGGA+GGG 0.606241 5.1:+11202936 None:intergenic
CTGAATGGAGGGACAATTTG+GGG 0.606622 5.1:+11202947 None:intergenic
CTTGTCCGTTGGATGCATTG+TGG 0.610089 5.1:-11202050 MS.gene047738:CDS
CTTTATTTGCTCAGACGAAG+CGG 0.611083 5.1:-11202874 MS.gene047738:CDS
TCCAATGAAGTAAACTCACC+GGG 0.614859 5.1:+11202115 None:intergenic
TTGTTTAAAGCGTTGAGTGG+TGG 0.616744 5.1:+11202989 None:intergenic
GGGGCCCACAATGCATCCAA+CGG 0.620592 5.1:+11202045 None:intergenic
GGCGGTGATGAAGTGGAAGA+TGG 0.620846 5.1:+11202758 None:intergenic
TGCTTGTTTAAAGCGTTGAG+TGG 0.622145 5.1:+11202986 None:intergenic
TGTCTAGTGTCATTGCAACA+TGG 0.623456 5.1:+11202850 None:intergenic
GAATGGCTGCCATTGAGCCG+CGG 0.627105 5.1:+11202817 None:intergenic
AAAGCGTGTTACTTCAACAC+CGG 0.627272 5.1:-11202360 MS.gene047738:CDS
TAGTTCCGGTTGATCATCGG+TGG 0.629006 5.1:-11202197 MS.gene047738:CDS
GAGTGGCAAGGGTAAACCGT+GGG 0.630748 5.1:-11202094 MS.gene047738:CDS
ATACGACGCAGATGACGGAA+TGG 0.633229 5.1:-11202296 MS.gene047738:CDS
CCATGTTGATGTCTGAATGG+AGG 0.634878 5.1:+11202935 None:intergenic
GCAAATCCCGACAAAGCCCA+CGG 0.638145 5.1:+11202145 None:intergenic
ATGAGAAATGGTGAAGACCA+TGG 0.640077 5.1:+11203067 None:intergenic
GCGAATGTTAACGAAAGTGA+AGG 0.640388 5.1:+11202390 None:intergenic
TTAGCATCAAGCCTGGCCCA+CGG 0.649035 5.1:+11202078 None:intergenic
GAAGGATTCGACCAAAACGT+AGG 0.664002 5.1:+11202408 None:intergenic
CCTCCATTCAGACATCAACA+TGG 0.666902 5.1:-11202935 MS.gene047738:CDS
TGGCTGCCATTGAGCCGCGG+AGG 0.676738 5.1:+11202820 None:intergenic
AGTTTCTAGAAGGTCATATG+GGG 0.692031 5.1:+11202026 None:intergenic
GGAGTGGCAAGGGTAAACCG+TGG 0.716157 5.1:-11202095 MS.gene047738:CDS
TGGTTATTGATTTAGCACGG+TGG 0.735376 5.1:-11202332 MS.gene047738:CDS
AGGATTCGACCAAAACGTAG+GGG 0.744019 5.1:+11202410 None:intergenic
CTAGACATAAAATACCTCCG+CGG 0.776515 5.1:-11202834 MS.gene047738:CDS
GAGGTGTATCGAGTGCAGAG+CGG 0.779749 5.1:+11202613 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTGGAATTTTAAGTAT+GGG + chr5.1:11202391-11202410 None:intergenic 20.0%
!!! TAGATTTGGAATTTTAAGTA+TGG + chr5.1:11202392-11202411 None:intergenic 20.0%
! TAAATCAATAACCATAACTC+CGG + chr5.1:11202732-11202751 None:intergenic 25.0%
! TAAGAGATTGAAATGAGAAA+TGG + chr5.1:11202018-11202037 None:intergenic 25.0%
!!! TTATGGTTATTGATTTAGCA+CGG - chr5.1:11202735-11202754 MS.gene047738:CDS 25.0%
AGTTGAGATTAGACCTGAAA+TGG + chr5.1:11202432-11202451 None:intergenic 35.0%
AGTTTGGAAGAAGGTTAGAT+AGG + chr5.1:11202502-11202521 None:intergenic 35.0%
ATCATCGACAAGAATGAGAT+CGG + chr5.1:11202552-11202571 None:intergenic 35.0%
TTCAACACTGAAACCATTTC+AGG - chr5.1:11202416-11202435 MS.gene047738:CDS 35.0%
TTTGGGGAGTTGTAGAATTT+AGG + chr5.1:11202110-11202129 None:intergenic 35.0%
! AAATGGTTTCAGTGTTGAAG+GGG + chr5.1:11202415-11202434 None:intergenic 35.0%
! ACTATTTTACCCCTACGTTT+TGG - chr5.1:11202651-11202670 MS.gene047738:CDS 35.0%
! AGTTTCTAGAAGGTCATATG+GGG + chr5.1:11203047-11203066 None:intergenic 35.0%
! GAAATGGTTTCAGTGTTGAA+GGG + chr5.1:11202416-11202435 None:intergenic 35.0%
! GAGTTTCTAGAAGGTCATAT+GGG + chr5.1:11203048-11203067 None:intergenic 35.0%
! TGAAATGGTTTCAGTGTTGA+AGG + chr5.1:11202417-11202436 None:intergenic 35.0%
AAATTCGCGTTGCAGTATTC+AGG + chr5.1:11202626-11202645 None:intergenic 40.0%
AAGGATTCGACCAAAACGTA+GGG + chr5.1:11202664-11202683 None:intergenic 40.0%
AGAATGAGGATCTATGAGCT+TGG - chr5.1:11202812-11202831 MS.gene047738:CDS 40.0%
AGATAGTTCCGGTTGATCAT+CGG - chr5.1:11202870-11202889 MS.gene047738:CDS 40.0%
AGATTATACGACGCAGATGA+CGG - chr5.1:11202769-11202788 MS.gene047738:CDS 40.0%
AGTATGGGAATGAGTTTGAG+AGG + chr5.1:11202376-11202395 None:intergenic 40.0%
CATGTTGATGTCTGAATGGA+GGG + chr5.1:11202137-11202156 None:intergenic 40.0%
CTAGACATAAAATACCTCCG+CGG - chr5.1:11202236-11202255 MS.gene047738:CDS 40.0%
CTCCAATGAAGTAAACTCAC+CGG + chr5.1:11202959-11202978 None:intergenic 40.0%
GCGAATGTTAACGAAAGTGA+AGG + chr5.1:11202683-11202702 None:intergenic 40.0%
GTATGGGAATGAGTTTGAGA+GGG + chr5.1:11202375-11202394 None:intergenic 40.0%
GTATTCAGGTGCAGCTAAAA+CGG + chr5.1:11202612-11202631 None:intergenic 40.0%
GTGAGTTTACTTCATTGGAG+TGG - chr5.1:11202959-11202978 MS.gene047738:CDS 40.0%
TCCAATGAAGTAAACTCACC+GGG + chr5.1:11202958-11202977 None:intergenic 40.0%
TCTGAATGGAGGGACAATTT+GGG + chr5.1:11202127-11202146 None:intergenic 40.0%
TGTCCATGTTGATGTCTGAA+TGG + chr5.1:11202141-11202160 None:intergenic 40.0%
TTACTTCAACACCGGAGTTA+TGG - chr5.1:11202718-11202737 MS.gene047738:CDS 40.0%
TTACTTCATTGGAGTGGCAA+GGG - chr5.1:11202965-11202984 MS.gene047738:CDS 40.0%
TTTACTTCATTGGAGTGGCA+AGG - chr5.1:11202964-11202983 MS.gene047738:CDS 40.0%
TTTCGTTAACATTCGCGACT+CGG - chr5.1:11202687-11202706 MS.gene047738:CDS 40.0%
! AAGTGGAAGATGGTGTTTTC+TGG + chr5.1:11202305-11202324 None:intergenic 40.0%
! ACGATTTTGTGAACGCAGTT+TGG + chr5.1:11202518-11202537 None:intergenic 40.0%
! AGAAACTCCTTTTGCTCTTG+AGG - chr5.1:11203060-11203079 MS.gene047738:CDS 40.0%
! CTTTATTTGCTCAGACGAAG+CGG - chr5.1:11202196-11202215 MS.gene047738:CDS 40.0%
! GAGCAAAAGGAGTTTCTAGA+AGG + chr5.1:11203057-11203076 None:intergenic 40.0%
! GGAGTTTCTAGAAGGTCATA+TGG + chr5.1:11203049-11203068 None:intergenic 40.0%
! TGTCTAGTGTCATTGCAACA+TGG + chr5.1:11202223-11202242 None:intergenic 40.0%
!! AAAGCGTGTTACTTCAACAC+CGG - chr5.1:11202710-11202729 MS.gene047738:CDS 40.0%
!! GTCTGTGTTTGTAGTTTGCT+CGG + chr5.1:11202171-11202190 None:intergenic 40.0%
!! TGCTTGTTTAAAGCGTTGAG+TGG + chr5.1:11202087-11202106 None:intergenic 40.0%
!! TGGTTATTGATTTAGCACGG+TGG - chr5.1:11202738-11202757 MS.gene047738:CDS 40.0%
!! TTATTGATTTAGCACGGTGG+CGG - chr5.1:11202741-11202760 MS.gene047738:CDS 40.0%
!! TTGTTTAAAGCGTTGAGTGG+TGG + chr5.1:11202084-11202103 None:intergenic 40.0%
AGGATTCGACCAAAACGTAG+GGG + chr5.1:11202663-11202682 None:intergenic 45.0%
ATCAACCGGAACTATCTTCC+CGG + chr5.1:11202867-11202886 None:intergenic 45.0%
ATCATCGGTGGAATCAGCAT+GGG - chr5.1:11202885-11202904 MS.gene047738:CDS 45.0%
CCATGTTGATGTCTGAATGG+AGG + chr5.1:11202138-11202157 None:intergenic 45.0%
CCGGCGAAAACAAGCAAAAA+CGG + chr5.1:11202848-11202867 None:intergenic 45.0%
CCTCCATTCAGACATCAACA+TGG - chr5.1:11202135-11202154 MS.gene047738:CDS 45.0%
CTGAATGGAGGGACAATTTG+GGG + chr5.1:11202126-11202145 None:intergenic 45.0%
GAAGGATTCGACCAAAACGT+AGG + chr5.1:11202665-11202684 None:intergenic 45.0%
GCGAAAACAAGCAAAAACGG+CGG + chr5.1:11202845-11202864 None:intergenic 45.0%
GTCTGAATGGAGGGACAATT+TGG + chr5.1:11202128-11202147 None:intergenic 45.0%
TAATTTCGCGCGTAGTTGAG+AGG + chr5.1:11202479-11202498 None:intergenic 45.0%
TGATTCCACCGATGATCAAC+CGG + chr5.1:11202881-11202900 None:intergenic 45.0%
TGGAGCTTCAGAAGAGAATG+AGG - chr5.1:11202798-11202817 MS.gene047738:CDS 45.0%
TGTGAACGCAGTTTGGAAGA+AGG + chr5.1:11202511-11202530 None:intergenic 45.0%
TTGTCCGTTGGATGCATTGT+GGG - chr5.1:11203021-11203040 MS.gene047738:CDS 45.0%
! AGTTTGAGAGGGTGGTGTTA+AGG + chr5.1:11202364-11202383 None:intergenic 45.0%
! ATAACTTCCGTGGGCTTTGT+CGG - chr5.1:11202918-11202937 MS.gene047738:CDS 45.0%
! CAGTGTTGAAGGGGTAGATT+TGG + chr5.1:11202406-11202425 None:intergenic 45.0%
! GATGGTGTTTTCTGGACAAG+AGG + chr5.1:11202297-11202316 None:intergenic 45.0%
! GTTTGAGAGGGTGGTGTTAA+GGG + chr5.1:11202363-11202382 None:intergenic 45.0%
! TTTCTGGACAAGAGGAGTGT+TGG + chr5.1:11202289-11202308 None:intergenic 45.0%
!! CCGTTTTTGCTTGTTTTCGC+CGG - chr5.1:11202845-11202864 MS.gene047738:CDS 45.0%
!! CGTTTTTGCTTGTTTTCGCC+GGG - chr5.1:11202846-11202865 MS.gene047738:CDS 45.0%
AAAATACCTCCGCGGCTCAA+TGG - chr5.1:11202244-11202263 MS.gene047738:CDS 50.0%
AGGACGATTAGCATCAAGCC+TGG + chr5.1:11203002-11203021 None:intergenic 50.0%
CACAATGCATCCAACGGACA+AGG + chr5.1:11203022-11203041 None:intergenic 50.0%
CTTGTCCGTTGGATGCATTG+TGG - chr5.1:11203020-11203039 MS.gene047738:CDS 50.0%
CTTTGTCGGGATTTGCATCC+AGG - chr5.1:11202932-11202951 MS.gene047738:CDS 50.0%
GATCATCGGTGGAATCAGCA+TGG - chr5.1:11202884-11202903 MS.gene047738:CDS 50.0%
GCCCGGTGAGTTTACTTCAT+TGG - chr5.1:11202954-11202973 MS.gene047738:CDS 50.0%
GTGTTGGAGGACAGAGAGAA+TGG + chr5.1:11202273-11202292 None:intergenic 50.0%
TAGTTCCGGTTGATCATCGG+TGG - chr5.1:11202873-11202892 MS.gene047738:CDS 50.0%
TGCTAATCGTCCTTGTCCGT+TGG - chr5.1:11203009-11203028 MS.gene047738:CDS 50.0%
TGGGAATGAGTTTGAGAGGG+TGG + chr5.1:11202372-11202391 None:intergenic 50.0%
TTGGCGGTGATAACTTCCGT+GGG - chr5.1:11202909-11202928 MS.gene047738:CDS 50.0%
TTTCGCCGGGAAGATAGTTC+CGG - chr5.1:11202859-11202878 MS.gene047738:CDS 50.0%
! TAACTTCCGTGGGCTTTGTC+GGG - chr5.1:11202919-11202938 MS.gene047738:CDS 50.0%
!! ATACGACGCAGATGACGGAA+TGG - chr5.1:11202774-11202793 MS.gene047738:CDS 50.0%
CTTGGCGGTGATAACTTCCG+TGG - chr5.1:11202908-11202927 MS.gene047738:CDS 55.0%
GAGGTGTATCGAGTGCAGAG+CGG + chr5.1:11202460-11202479 None:intergenic 55.0%
GAGTGGCAAGGGTAAACCGT+GGG - chr5.1:11202976-11202995 MS.gene047738:CDS 55.0%
GCAAATCCCGACAAAGCCCA+CGG + chr5.1:11202928-11202947 None:intergenic 55.0%
GGCGGTGATGAAGTGGAAGA+TGG + chr5.1:11202315-11202334 None:intergenic 55.0%
TGAAGTAAACTCACCGGGCC+TGG + chr5.1:11202953-11202972 None:intergenic 55.0%
TGGAATCAGCATGGGCTTGG+CGG - chr5.1:11202893-11202912 MS.gene047738:CDS 55.0%
TTAGCATCAAGCCTGGCCCA+CGG + chr5.1:11202995-11203014 None:intergenic 55.0%
! GAGGGTGGTGTTAAGGGTGA+CGG + chr5.1:11202357-11202376 None:intergenic 55.0%
! GGTGGAGGTGGTTTTCGATG+CGG + chr5.1:11202336-11202355 None:intergenic 55.0%
!! CTGGACAAGAGGAGTGTTGG+AGG + chr5.1:11202286-11202305 None:intergenic 55.0%
!! GACGCAGATGACGGAATGGA+TGG - chr5.1:11202778-11202797 MS.gene047738:CDS 55.0%
!! GATTTAGCACGGTGGCGGAT+CGG - chr5.1:11202746-11202765 MS.gene047738:CDS 55.0%
CGGTGGAATCAGCATGGGCT+TGG - chr5.1:11202890-11202909 MS.gene047738:CDS 60.0%
GAATGGCTGCCATTGAGCCG+CGG + chr5.1:11202256-11202275 None:intergenic 60.0%
GGAGTGGCAAGGGTAAACCG+TGG - chr5.1:11202975-11202994 MS.gene047738:CDS 60.0%
GGGGCCCACAATGCATCCAA+CGG + chr5.1:11203028-11203047 None:intergenic 60.0%
TCGATGCGGCGGTGATGAAG+TGG + chr5.1:11202322-11202341 None:intergenic 60.0%
TCGGGATTTGCATCCAGGCC+CGG - chr5.1:11202937-11202956 MS.gene047738:CDS 60.0%
! GGAGGTGGTTTTCGATGCGG+CGG + chr5.1:11202333-11202352 None:intergenic 60.0%
! GGTGGTGTTAAGGGTGACGG+TGG + chr5.1:11202354-11202373 None:intergenic 60.0%
! GGTGTTAAGGGTGACGGTGG+AGG + chr5.1:11202351-11202370 None:intergenic 60.0%
! GTTAAGGGTGACGGTGGAGG+TGG + chr5.1:11202348-11202367 None:intergenic 60.0%
GCAAGGGTAAACCGTGGGCC+AGG - chr5.1:11202981-11203000 MS.gene047738:CDS 65.0%
TGGCTGCCATTGAGCCGCGG+AGG + chr5.1:11202253-11202272 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 11202005 11203087 11202005 ID=MS.gene047738
chr5.1 mRNA 11202005 11203087 11202005 ID=MS.gene047738.t1;Parent=MS.gene047738
chr5.1 exon 11202005 11203087 11202005 ID=MS.gene047738.t1.exon1;Parent=MS.gene047738.t1
chr5.1 CDS 11202005 11203087 11202005 ID=cds.MS.gene047738.t1;Parent=MS.gene047738.t1
Gene Sequence

>MS.gene047738

ATGGTCTTCACCATTTCTCATTTCAATCTCTTAACTCTCTTATTTCTCTTCTCAACTTATCAACATGTCACTTGTACCACCACTCAACGCTTTAAACAAGCACCTAAATTCTACAACTCCCCAAATTGTCCCTCCATTCAGACATCAACATGGACAACTTCGTCCGAGCAAACTACAAACACAGACACAGACTTTATTTGCTCAGACGAAGCGGTCCATGTTGCAATGACACTAGACATAAAATACCTCCGCGGCTCAATGGCAGCCATTCTCTCTGTCCTCCAACACTCCTCTTGTCCAGAAAACACCATCTTCCACTTCATCACCGCCGCATCGAAAACCACCTCCACCGTCACCCTTAACACCACCCTCTCAAACTCATTCCCATACTTAAAATTCCAAATCTACCCCTTCAACACTGAAACCATTTCAGGTCTAATCTCAACTTCAATCCGCTCTGCACTCGATACACCTCTCAACTACGCGCGAAATTACCTATCTAACCTTCTTCCAAACTGCGTTCACAAAATCGTTTATCTTGATTCCGATCTCATTCTTGTCGATGATATCGCAAAACTCGCTGCAACGAATCTCACAAACGACGCCGTTTTAGCTGCACCTGAATACTGCAACGCGAATTTCAGTTACTATTTTACCCCTACGTTTTGGTCGAATCCTTCACTTTCGTTAACATTCGCGACTCGGAAAGCGTGTTACTTCAACACCGGAGTTATGGTTATTGATTTAGCACGGTGGCGGATCGGAGATTATACGACGCAGATGACGGAATGGATGGAGCTTCAGAAGAGAATGAGGATCTATGAGCTTGGTTCATTGCCGCCGTTTTTGCTTGTTTTCGCCGGGAAGATAGTTCCGGTTGATCATCGGTGGAATCAGCATGGGCTTGGCGGTGATAACTTCCGTGGGCTTTGTCGGGATTTGCATCCAGGCCCGGTGAGTTTACTTCATTGGAGTGGCAAGGGTAAACCGTGGGCCAGGCTTGATGCTAATCGTCCTTGTCCGTTGGATGCATTGTGGGCCCCATATGACCTTCTAGAAACTCCTTTTGCTCTTGAGGCCTAA
Protein sequence

>MS.gene047738.t1

MVFTISHFNLLTLLFLFSTYQHVTCTTTQRFKQAPKFYNSPNCPSIQTSTWTTSSEQTTNTDTDFICSDEAVHVAMTLDIKYLRGSMAAILSVLQHSSCPENTIFHFITAASKTTSTVTLNTTLSNSFPYLKFQIYPFNTETISGLISTSIRSALDTPLNYARNYLSNLLPNCVHKIVYLDSDLILVDDIAKLAATNLTNDAVLAAPEYCNANFSYYFTPTFWSNPSLSLTFATRKACYFNTGVMVIDLARWRIGDYTTQMTEWMELQKRMRIYELGSLPPFLLVFAGKIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLETPFALEA