Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048249.t1 | XP_013462945.1 | 99.4 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 9.70E-77 | 296.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048249.t1 | O23310 | 84.3 | 121 | 15 | 1 | 1 | 117 | 1 | 121 | 9.2e-52 | 204.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048249.t1 | I3TAX1 | 99.4 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 7.0e-77 | 296.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene048249.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048249 | MS.gene42075 | PPI |
| MS.gene87064 | MS.gene048249 | PPI |
| MS.gene76728 | MS.gene048249 | PPI |
| MS.gene048249 | MS.gene82237 | PPI |
| MS.gene048249 | MS.gene77045 | PPI |
| MS.gene048249 | MS.gene48819 | PPI |
| MS.gene048249 | MS.gene87743 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048249.t1 | MTR_2g026710 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 8.51e-121 | 338 |
| MS.gene048249.t1 | MTR_5g095740 | 66.667 | 165 | 42 | 4 | 1 | 155 | 1 | 162 | 5.48e-69 | 207 |
| MS.gene048249.t1 | MTR_3g058980 | 73.944 | 142 | 22 | 3 | 1 | 132 | 1 | 137 | 3.68e-67 | 203 |
| MS.gene048249.t1 | MTR_8g091720 | 76.190 | 126 | 23 | 2 | 16 | 134 | 27 | 152 | 1.17e-63 | 194 |
| MS.gene048249.t1 | MTR_4g133938 | 73.846 | 130 | 29 | 2 | 1 | 125 | 1 | 130 | 2.02e-63 | 191 |
| MS.gene048249.t1 | MTR_7g061270 | 59.509 | 163 | 50 | 3 | 1 | 147 | 1 | 163 | 3.24e-62 | 189 |
| MS.gene048249.t1 | MTR_7g100650 | 73.950 | 119 | 22 | 1 | 1 | 110 | 1 | 119 | 1.28e-61 | 188 |
| MS.gene048249.t1 | MTR_1g072790 | 64.336 | 143 | 39 | 2 | 3 | 133 | 9 | 151 | 1.75e-61 | 188 |
| MS.gene048249.t1 | MTR_8g093920 | 77.778 | 108 | 22 | 1 | 16 | 121 | 39 | 146 | 6.51e-58 | 180 |
| MS.gene048249.t1 | MTR_4g133952 | 52.564 | 156 | 54 | 4 | 2 | 144 | 48 | 196 | 1.97e-52 | 167 |
| MS.gene048249.t1 | MTR_1g088860 | 75.000 | 96 | 24 | 0 | 16 | 111 | 35 | 130 | 1.58e-51 | 163 |
| MS.gene048249.t1 | MTR_0392s0020 | 66.667 | 108 | 32 | 1 | 4 | 111 | 9 | 112 | 1.04e-50 | 159 |
| MS.gene048249.t1 | MTR_4g119500 | 61.157 | 121 | 44 | 1 | 4 | 124 | 12 | 129 | 1.16e-50 | 159 |
| MS.gene048249.t1 | MTR_1g039040 | 62.745 | 102 | 38 | 0 | 13 | 114 | 2 | 103 | 2.43e-47 | 152 |
| MS.gene048249.t1 | MTR_1g083070 | 64.130 | 92 | 33 | 0 | 17 | 108 | 4 | 95 | 1.68e-40 | 133 |
| MS.gene048249.t1 | MTR_1g029070 | 54.839 | 93 | 42 | 0 | 22 | 114 | 57 | 149 | 1.54e-30 | 109 |
| MS.gene048249.t1 | MTR_5g095900 | 45.098 | 102 | 53 | 1 | 7 | 105 | 3 | 104 | 4.66e-23 | 90.5 |
| MS.gene048249.t1 | MTR_1g028480 | 46.429 | 84 | 44 | 1 | 47 | 129 | 19 | 102 | 2.41e-19 | 79.0 |
| MS.gene048249.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 22 | 97 | 7 | 82 | 1.61e-18 | 76.3 |
| MS.gene048249.t1 | MTR_2g056000 | 33.333 | 78 | 52 | 0 | 18 | 95 | 42 | 119 | 2.85e-14 | 67.4 |
| MS.gene048249.t1 | MTR_4g112380 | 32.530 | 83 | 56 | 0 | 13 | 95 | 7 | 89 | 3.25e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048249.t1 | AT4G14540 | 84.298 | 121 | 15 | 1 | 1 | 117 | 1 | 121 | 2.39e-71 | 213 |
| MS.gene048249.t1 | AT5G47640 | 83.929 | 112 | 16 | 2 | 16 | 127 | 26 | 135 | 9.24e-64 | 194 |
| MS.gene048249.t1 | AT2G38880 | 68.939 | 132 | 36 | 2 | 10 | 139 | 12 | 140 | 1.87e-60 | 184 |
| MS.gene048249.t1 | AT2G38880 | 70.312 | 128 | 33 | 2 | 10 | 135 | 12 | 136 | 2.41e-60 | 184 |
| MS.gene048249.t1 | AT2G38880 | 70.312 | 128 | 33 | 2 | 10 | 135 | 12 | 136 | 2.41e-60 | 184 |
| MS.gene048249.t1 | AT2G38880 | 70.312 | 128 | 33 | 2 | 10 | 135 | 12 | 136 | 2.41e-60 | 184 |
| MS.gene048249.t1 | AT2G37060 | 77.064 | 109 | 21 | 1 | 6 | 110 | 15 | 123 | 5.23e-59 | 182 |
| MS.gene048249.t1 | AT2G37060 | 77.064 | 109 | 21 | 1 | 6 | 110 | 15 | 123 | 5.23e-59 | 182 |
| MS.gene048249.t1 | AT2G37060 | 77.064 | 109 | 21 | 1 | 6 | 110 | 15 | 123 | 5.23e-59 | 182 |
| MS.gene048249.t1 | AT2G38880 | 69.531 | 128 | 32 | 2 | 10 | 135 | 12 | 134 | 1.04e-58 | 180 |
| MS.gene048249.t1 | AT3G53340 | 62.838 | 148 | 38 | 4 | 15 | 147 | 27 | 172 | 1.38e-57 | 178 |
| MS.gene048249.t1 | AT3G53340 | 62.838 | 148 | 38 | 4 | 15 | 147 | 27 | 172 | 1.38e-57 | 178 |
| MS.gene048249.t1 | AT2G38880 | 81.000 | 100 | 17 | 1 | 10 | 107 | 12 | 111 | 1.81e-57 | 176 |
| MS.gene048249.t1 | AT2G13570 | 83.333 | 96 | 16 | 0 | 16 | 111 | 35 | 130 | 2.16e-57 | 179 |
| MS.gene048249.t1 | AT2G38880 | 81.000 | 100 | 17 | 1 | 10 | 107 | 12 | 111 | 6.47e-57 | 176 |
| MS.gene048249.t1 | AT2G38880 | 81.000 | 100 | 17 | 1 | 10 | 107 | 12 | 111 | 6.47e-57 | 176 |
| MS.gene048249.t1 | AT2G38880 | 81.000 | 100 | 17 | 1 | 10 | 107 | 12 | 111 | 6.47e-57 | 176 |
| MS.gene048249.t1 | AT2G38880 | 81.000 | 100 | 17 | 1 | 10 | 107 | 12 | 111 | 6.83e-57 | 176 |
| MS.gene048249.t1 | AT2G38880 | 81.000 | 100 | 17 | 1 | 10 | 107 | 12 | 111 | 6.83e-57 | 176 |
| MS.gene048249.t1 | AT3G53340 | 77.778 | 99 | 22 | 0 | 16 | 114 | 28 | 126 | 8.55e-56 | 173 |
| MS.gene048249.t1 | AT3G53340 | 77.778 | 99 | 22 | 0 | 16 | 114 | 28 | 126 | 8.55e-56 | 173 |
| MS.gene048249.t1 | AT3G53340 | 80.435 | 92 | 18 | 0 | 16 | 107 | 28 | 119 | 3.57e-55 | 170 |
| MS.gene048249.t1 | AT2G47810 | 72.549 | 102 | 28 | 0 | 16 | 117 | 50 | 151 | 9.01e-52 | 163 |
| MS.gene048249.t1 | AT5G47670 | 63.063 | 111 | 39 | 1 | 3 | 111 | 13 | 123 | 3.94e-51 | 163 |
| MS.gene048249.t1 | AT5G47670 | 63.063 | 111 | 39 | 1 | 3 | 111 | 42 | 152 | 8.75e-51 | 163 |
| MS.gene048249.t1 | AT5G47670 | 63.063 | 111 | 39 | 1 | 3 | 111 | 42 | 152 | 8.75e-51 | 163 |
| MS.gene048249.t1 | AT1G21970 | 52.273 | 132 | 60 | 2 | 12 | 140 | 52 | 183 | 1.46e-46 | 152 |
| MS.gene048249.t1 | AT1G09030 | 61.458 | 96 | 37 | 0 | 17 | 112 | 3 | 98 | 5.85e-43 | 140 |
| MS.gene048249.t1 | AT5G08190 | 34.286 | 105 | 63 | 2 | 13 | 113 | 7 | 109 | 1.92e-17 | 75.5 |
| MS.gene048249.t1 | AT5G23090 | 32.381 | 105 | 65 | 2 | 13 | 113 | 7 | 109 | 8.25e-17 | 73.6 |
| MS.gene048249.t1 | AT5G08190 | 37.349 | 83 | 52 | 0 | 13 | 95 | 7 | 89 | 1.99e-16 | 72.8 |
| MS.gene048249.t1 | AT5G23090 | 33.000 | 100 | 61 | 2 | 13 | 108 | 7 | 104 | 6.79e-16 | 71.2 |
| MS.gene048249.t1 | AT5G23090 | 33.000 | 100 | 61 | 2 | 13 | 108 | 7 | 104 | 6.79e-16 | 71.2 |
| MS.gene048249.t1 | AT5G23090 | 33.000 | 100 | 61 | 2 | 13 | 108 | 7 | 104 | 6.79e-16 | 71.2 |
| MS.gene048249.t1 | AT5G23090 | 32.911 | 79 | 47 | 2 | 34 | 108 | 15 | 91 | 2.48e-11 | 58.9 |
Find 39 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGGTAGTGGTGGAGTTTA+TGG | 0.223086 | 2.3:-62569085 | MS.gene048249:CDS |
| TCAACGGTGATGATCTTCTT+TGG | 0.252720 | 2.3:-62569237 | MS.gene048249:CDS |
| TTTGAGATCTTTGCGTTTGC+TGG | 0.274169 | 2.3:+62569358 | None:intergenic |
| ATCCTACTCACGTTTGCTAT+TGG | 0.294063 | 2.3:+62569397 | None:intergenic |
| CGTGAGTAGGATCATGAAAA+AGG | 0.331544 | 2.3:-62569386 | MS.gene048249:CDS |
| GGGAGTGGATCACCATCTTC+TGG | 0.352082 | 2.3:-62569001 | MS.gene048249:CDS |
| GGACATAATATGTATGGATC+TGG | 0.358939 | 2.3:-62569022 | MS.gene048249:CDS |
| GAGTTCATCAGTTTCATAAC+AGG | 0.366706 | 2.3:-62569301 | MS.gene048249:CDS |
| CTTTGGGCTATGACAACTCT+TGG | 0.376889 | 2.3:-62569220 | MS.gene048249:CDS |
| CAACGGTGATGATCTTCTTT+GGG | 0.389396 | 2.3:-62569236 | MS.gene048249:CDS |
| GGAGAGAAGAGTGCTATGAT+TGG | 0.411557 | 2.3:-62569139 | MS.gene048249:CDS |
| CAGGTTGCAGAGAGCAAGAT+AGG | 0.412786 | 2.3:-62569426 | MS.gene048249:CDS |
| GAGTCAGGAGGTGGTCAAAC+AGG | 0.413478 | 2.3:-62569445 | MS.gene048249:CDS |
| AGTGGTGGAGTTTATGGTCA+TGG | 0.452362 | 2.3:-62569079 | MS.gene048249:CDS |
| GGAGTTTATGGTCATGGAGT+TGG | 0.458217 | 2.3:-62569073 | MS.gene048249:CDS |
| CGAGTACTCCTTCCAGAAGA+TGG | 0.483647 | 2.3:+62568989 | None:intergenic |
| AGAAGAGTGCTATGATTGGT+AGG | 0.483869 | 2.3:-62569135 | MS.gene048249:CDS |
| ATCATCATCATCATAGAAGA+TGG | 0.485382 | 2.3:+62569046 | None:intergenic |
| ATCTTCTATGATGATGATGA+TGG | 0.489435 | 2.3:-62569044 | MS.gene048249:CDS |
| GGTAGGAGTGATCAGAGAGA+TGG | 0.493822 | 2.3:-62569118 | MS.gene048249:CDS |
| GGAAATGTTGGTGAGGGTAG+TGG | 0.495110 | 2.3:-62569097 | MS.gene048249:CDS |
| TTTGAGTAAGTATAGAGAGA+TGG | 0.496858 | 2.3:-62569164 | MS.gene048249:CDS |
| ATGATGGGACATAATATGTA+TGG | 0.500614 | 2.3:-62569028 | MS.gene048249:CDS |
| GCTGAATCAGACAATGAGTC+AGG | 0.509383 | 2.3:-62569460 | MS.gene048249:CDS |
| GATCAGAGAGATGGAAATGT+TGG | 0.512395 | 2.3:-62569109 | MS.gene048249:CDS |
| GACATAATATGTATGGATCT+GGG | 0.545156 | 2.3:-62569021 | MS.gene048249:CDS |
| AGAGATGGAAATGTTGGTGA+GGG | 0.549342 | 2.3:-62569103 | MS.gene048249:CDS |
| ATAAGTGTCAGAAAGAGAAG+AGG | 0.567471 | 2.3:-62569267 | MS.gene048249:CDS |
| AGTAAGTATAGAGAGATGGA+AGG | 0.568189 | 2.3:-62569160 | MS.gene048249:CDS |
| AATGTTGGTGAGGGTAGTGG+TGG | 0.579830 | 2.3:-62569094 | MS.gene048249:CDS |
| AATATGTATGGATCTGGGAG+TGG | 0.582558 | 2.3:-62569016 | MS.gene048249:CDS |
| TTCCAATAGCAAACGTGAGT+AGG | 0.595976 | 2.3:-62569399 | MS.gene048249:CDS |
| TCAGACAATGAGTCAGGAGG+TGG | 0.599898 | 2.3:-62569454 | MS.gene048249:CDS |
| TTACTCAAATAAATCTTGAG+TGG | 0.610816 | 2.3:+62569178 | None:intergenic |
| GAGAAGAGGAAAACAATCAA+CGG | 0.615125 | 2.3:-62569253 | MS.gene048249:CDS |
| GAGAGATGGAAATGTTGGTG+AGG | 0.620088 | 2.3:-62569104 | MS.gene048249:CDS |
| GTGGATCACCATCTTCTGGA+AGG | 0.624829 | 2.3:-62568997 | MS.gene048249:CDS |
| TCTTCTATGATGATGATGAT+GGG | 0.641124 | 2.3:-62569043 | MS.gene048249:CDS |
| GAATCAGACAATGAGTCAGG+AGG | 0.682591 | 2.3:-62569457 | MS.gene048249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCTTTTTATTTTTTG+TGG | - | chr2.3:62569033-62569052 | MS.gene048249:CDS | 10.0% |
| !!! | TAATTTTTTTTTGTTCATTA+AGG | - | chr2.3:62569220-62569239 | MS.gene048249:CDS | 10.0% |
| !!! | TTTTTCTTTTTATTTTTTGT+GGG | - | chr2.3:62569034-62569053 | MS.gene048249:CDS | 10.0% |
| !!! | TTTAAAGTTTAAAAAGGAAA+CGG | + | chr2.3:62569440-62569459 | None:intergenic | 15.0% |
| !! | AAAACATACCAATTAATAAC+AGG | + | chr2.3:62569292-62569311 | None:intergenic | 20.0% |
| !! | AAATTGCAACAATATATCTA+GGG | + | chr2.3:62568951-62568970 | None:intergenic | 20.0% |
| !! | ATTTCTTTCAGTTTAATCAT+AGG | + | chr2.3:62568836-62568855 | None:intergenic | 20.0% |
| !! | GTTTATGAAAATTAACATTG+TGG | + | chr2.3:62569251-62569270 | None:intergenic | 20.0% |
| !! | TAAATTGCAACAATATATCT+AGG | + | chr2.3:62568952-62568971 | None:intergenic | 20.0% |
| !! | TAACAATTCCTGTTATTAAT+TGG | - | chr2.3:62569281-62569300 | MS.gene048249:CDS | 20.0% |
| !! | TAACAGGAATTGTTATAAAT+AGG | + | chr2.3:62569276-62569295 | None:intergenic | 20.0% |
| !!! | AACCTGTTTAAAGTTTAAAA+AGG | + | chr2.3:62569446-62569465 | None:intergenic | 20.0% |
| !!! | ATAGTCTAGTTTCTAATTAA+AGG | + | chr2.3:62569160-62569179 | None:intergenic | 20.0% |
| !!! | TTCCTTTTTAAACTTTAAAC+AGG | - | chr2.3:62569441-62569460 | MS.gene048249:CDS | 20.0% |
| !!! | TTTTTTTGTTCATTAAGGAA+AGG | - | chr2.3:62569225-62569244 | MS.gene048249:CDS | 20.0% |
| ! | AGTATTTAGATGAGATAACT+CGG | + | chr2.3:62568859-62568878 | None:intergenic | 25.0% |
| ! | CTAATCACATTTAGTTATGA+TGG | + | chr2.3:62569409-62569428 | None:intergenic | 25.0% |
| ! | TACTCAATTCTAACTTCAAT+GGG | + | chr2.3:62569198-62569217 | None:intergenic | 25.0% |
| ! | TTACTCAAATAAATCTTGAG+TGG | + | chr2.3:62568546-62568565 | None:intergenic | 25.0% |
| ! | TTATCAACATGTTTCGAAAA+TGG | - | chr2.3:62569347-62569366 | MS.gene048249:CDS | 25.0% |
| ! | TTATCTCATCTAAATACTCT+TGG | - | chr2.3:62568861-62568880 | MS.gene048249:intron | 25.0% |
| !!! | GCAATTTAATTTGTTGTTGA+GGG | - | chr2.3:62568964-62568983 | MS.gene048249:intron | 25.0% |
| !!! | GTTTTGATCACACAATATAT+AGG | - | chr2.3:62569307-62569326 | MS.gene048249:CDS | 25.0% |
| !!! | TGCAATTTAATTTGTTGTTG+AGG | - | chr2.3:62568963-62568982 | MS.gene048249:intron | 25.0% |
| !!! | TTCTTTTTATTTTTTGTGGG+AGG | - | chr2.3:62569037-62569056 | MS.gene048249:CDS | 25.0% |
| ATCATCATCATCATAGAAGA+TGG | + | chr2.3:62568678-62568697 | None:intergenic | 30.0% | |
| CTACTCAATTCTAACTTCAA+TGG | + | chr2.3:62569199-62569218 | None:intergenic | 30.0% | |
| GACATAATATGTATGGATCT+GGG | - | chr2.3:62568700-62568719 | MS.gene048249:intron | 30.0% | |
| GATCAATGTAACAAAGAAGT+AGG | + | chr2.3:62569129-62569148 | None:intergenic | 30.0% | |
| TGATCACACAATATATAGGT+TGG | - | chr2.3:62569311-62569330 | MS.gene048249:CDS | 30.0% | |
| TTTGAGTAAGTATAGAGAGA+TGG | - | chr2.3:62568557-62568576 | MS.gene048249:intron | 30.0% | |
| ! | ATCTTCTATGATGATGATGA+TGG | - | chr2.3:62568677-62568696 | MS.gene048249:intron | 30.0% |
| ! | ATGATGGGACATAATATGTA+TGG | - | chr2.3:62568693-62568712 | MS.gene048249:intron | 30.0% |
| ! | TCTTCTATGATGATGATGAT+GGG | - | chr2.3:62568678-62568697 | MS.gene048249:intron | 30.0% |
| AGTAAGTATAGAGAGATGGA+AGG | - | chr2.3:62568561-62568580 | MS.gene048249:intron | 35.0% | |
| ATAAGTGTCAGAAAGAGAAG+AGG | - | chr2.3:62568454-62568473 | MS.gene048249:intron | 35.0% | |
| GAGAAGAGGAAAACAATCAA+CGG | - | chr2.3:62568468-62568487 | MS.gene048249:intron | 35.0% | |
| GAGTTCATCAGTTTCATAAC+AGG | - | chr2.3:62568420-62568439 | MS.gene048249:intron | 35.0% | |
| GGACATAATATGTATGGATC+TGG | - | chr2.3:62568699-62568718 | MS.gene048249:intron | 35.0% | |
| GTACAGTGAAACATTATGGA+TGG | - | chr2.3:62568986-62569005 | MS.gene048249:intron | 35.0% | |
| ! | AAACATTATGGATGGTGGTT+TGG | - | chr2.3:62568994-62569013 | MS.gene048249:intron | 35.0% |
| AATACTCTTGGCTAGACAAC+AGG | - | chr2.3:62568873-62568892 | MS.gene048249:intron | 40.0% | |
| AATATGTATGGATCTGGGAG+TGG | - | chr2.3:62568705-62568724 | MS.gene048249:intron | 40.0% | |
| CAACGGTGATGATCTTCTTT+GGG | - | chr2.3:62568485-62568504 | MS.gene048249:intron | 40.0% | |
| CAGTGAAACATTATGGATGG+TGG | - | chr2.3:62568989-62569008 | MS.gene048249:intron | 40.0% | |
| CGTGAGTAGGATCATGAAAA+AGG | - | chr2.3:62568335-62568354 | MS.gene048249:intron | 40.0% | |
| GATCAGAGAGATGGAAATGT+TGG | - | chr2.3:62568612-62568631 | MS.gene048249:intron | 40.0% | |
| TCAACGGTGATGATCTTCTT+TGG | - | chr2.3:62568484-62568503 | MS.gene048249:intron | 40.0% | |
| TTCCAATAGCAAACGTGAGT+AGG | - | chr2.3:62568322-62568341 | MS.gene048249:intron | 40.0% | |
| ! | AGAGATGGAAATGTTGGTGA+GGG | - | chr2.3:62568618-62568637 | MS.gene048249:intron | 40.0% |
| ! | GAGGGTACAGTGAAACATTA+TGG | - | chr2.3:62568982-62569001 | MS.gene048249:intron | 40.0% |
| ! | TTTGAGATCTTTGCGTTTGC+TGG | + | chr2.3:62568366-62568385 | None:intergenic | 40.0% |
| !! | AGAAGAGTGCTATGATTGGT+AGG | - | chr2.3:62568586-62568605 | MS.gene048249:intron | 40.0% |
| !! | ATCCTACTCACGTTTGCTAT+TGG | + | chr2.3:62568327-62568346 | None:intergenic | 40.0% |
| CTTTGGGCTATGACAACTCT+TGG | - | chr2.3:62568501-62568520 | MS.gene048249:intron | 45.0% | |
| GAATCAGACAATGAGTCAGG+AGG | - | chr2.3:62568264-62568283 | MS.gene048249:intron | 45.0% | |
| GAGAGATGGAAATGTTGGTG+AGG | - | chr2.3:62568617-62568636 | MS.gene048249:intron | 45.0% | |
| GCTGAATCAGACAATGAGTC+AGG | - | chr2.3:62568261-62568280 | MS.gene048249:CDS | 45.0% | |
| GGAGTTTATGGTCATGGAGT+TGG | - | chr2.3:62568648-62568667 | MS.gene048249:intron | 45.0% | |
| ! | AGTGGTGGAGTTTATGGTCA+TGG | - | chr2.3:62568642-62568661 | MS.gene048249:intron | 45.0% |
| !! | GGAGAGAAGAGTGCTATGAT+TGG | - | chr2.3:62568582-62568601 | MS.gene048249:intron | 45.0% |
| CAGGTTGCAGAGAGCAAGAT+AGG | - | chr2.3:62568295-62568314 | MS.gene048249:intron | 50.0% | |
| CGAGTACTCCTTCCAGAAGA+TGG | + | chr2.3:62568735-62568754 | None:intergenic | 50.0% | |
| GGTAGGAGTGATCAGAGAGA+TGG | - | chr2.3:62568603-62568622 | MS.gene048249:intron | 50.0% | |
| GTGGATCACCATCTTCTGGA+AGG | - | chr2.3:62568724-62568743 | MS.gene048249:intron | 50.0% | |
| TCAGACAATGAGTCAGGAGG+TGG | - | chr2.3:62568267-62568286 | MS.gene048249:intron | 50.0% | |
| ! | AATGTTGGTGAGGGTAGTGG+TGG | - | chr2.3:62568627-62568646 | MS.gene048249:intron | 50.0% |
| ! | GAGGGTAGTGGTGGAGTTTA+TGG | - | chr2.3:62568636-62568655 | MS.gene048249:intron | 50.0% |
| ! | GGAAATGTTGGTGAGGGTAG+TGG | - | chr2.3:62568624-62568643 | MS.gene048249:intron | 50.0% |
| GAGTCAGGAGGTGGTCAAAC+AGG | - | chr2.3:62568276-62568295 | MS.gene048249:intron | 55.0% | |
| GGGAGTGGATCACCATCTTC+TGG | - | chr2.3:62568720-62568739 | MS.gene048249:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 62568258 | 62569485 | 62568258 | ID=MS.gene048249 |
| chr2.3 | mRNA | 62568258 | 62569485 | 62568258 | ID=MS.gene048249.t1;Parent=MS.gene048249 |
| chr2.3 | exon | 62568996 | 62569485 | 62568996 | ID=MS.gene048249.t1.exon1;Parent=MS.gene048249.t1 |
| chr2.3 | CDS | 62568996 | 62569485 | 62568996 | ID=cds.MS.gene048249.t1;Parent=MS.gene048249.t1 |
| chr2.3 | exon | 62568258 | 62568280 | 62568258 | ID=MS.gene048249.t1.exon2;Parent=MS.gene048249.t1 |
| chr2.3 | CDS | 62568258 | 62568280 | 62568258 | ID=cds.MS.gene048249.t1;Parent=MS.gene048249.t1 |
| Gene Sequence |
| Protein sequence |