Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04832.t1 | XP_013449828.1 | 93.2 | 503 | 34 | 0 | 1 | 503 | 1 | 503 | 1.10E-285 | 991.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04832.t1 | Q3EBR6 | 57.6 | 432 | 174 | 6 | 71 | 497 | 98 | 525 | 1.8e-151 | 537.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04832.t1 | A0A072U3F4 | 93.2 | 503 | 34 | 0 | 1 | 503 | 1 | 503 | 7.9e-286 | 991.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene04832 | MS.gene006510 | PPI |
MS.gene031785 | MS.gene04832 | PPI |
MS.gene052346 | MS.gene04832 | PPI |
MS.gene28990 | MS.gene04832 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04832.t1 | MTR_7g096120 | 93.241 | 503 | 34 | 0 | 1 | 503 | 1 | 503 | 0.0 | 969 |
MS.gene04832.t1 | MTR_7g096140 | 97.598 | 458 | 11 | 0 | 1 | 458 | 1 | 458 | 0.0 | 950 |
MS.gene04832.t1 | MTR_4g077070 | 53.613 | 429 | 183 | 10 | 73 | 495 | 99 | 517 | 7.30e-168 | 485 |
MS.gene04832.t1 | MTR_1995s0010 | 97.309 | 223 | 6 | 0 | 197 | 419 | 1 | 223 | 8.84e-163 | 460 |
MS.gene04832.t1 | MTR_2g015690 | 39.951 | 408 | 217 | 5 | 74 | 474 | 20 | 406 | 2.14e-99 | 305 |
MS.gene04832.t1 | MTR_4g087810 | 39.430 | 421 | 218 | 8 | 74 | 488 | 13 | 402 | 1.28e-97 | 301 |
MS.gene04832.t1 | MTR_4g087830 | 38.480 | 421 | 222 | 8 | 74 | 488 | 4 | 393 | 3.69e-96 | 297 |
MS.gene04832.t1 | MTR_7g006400 | 41.761 | 352 | 173 | 10 | 74 | 418 | 105 | 431 | 3.58e-85 | 272 |
MS.gene04832.t1 | MTR_4g080100 | 34.222 | 450 | 237 | 7 | 52 | 475 | 14 | 430 | 2.26e-83 | 265 |
MS.gene04832.t1 | MTR_5g013230 | 38.684 | 380 | 198 | 12 | 74 | 437 | 135 | 495 | 1.29e-80 | 261 |
MS.gene04832.t1 | MTR_7g081645 | 38.814 | 371 | 191 | 12 | 74 | 434 | 75 | 419 | 3.25e-78 | 251 |
MS.gene04832.t1 | MTR_7g081620 | 34.120 | 466 | 244 | 14 | 10 | 438 | 11 | 450 | 3.32e-76 | 247 |
MS.gene04832.t1 | MTR_4g099510 | 38.753 | 369 | 196 | 9 | 78 | 437 | 133 | 480 | 1.26e-71 | 237 |
MS.gene04832.t1 | MTR_2g020020 | 32.530 | 166 | 84 | 8 | 198 | 359 | 98 | 239 | 3.16e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04832.t1 | AT2G30550 | 57.639 | 432 | 174 | 6 | 71 | 497 | 98 | 525 | 0.0 | 535 |
MS.gene04832.t1 | AT1G06800 | 51.717 | 495 | 216 | 10 | 7 | 495 | 31 | 508 | 0.0 | 522 |
MS.gene04832.t1 | AT2G30550 | 60.112 | 356 | 133 | 6 | 71 | 421 | 98 | 449 | 1.82e-160 | 464 |
MS.gene04832.t1 | AT1G51440 | 48.833 | 514 | 225 | 12 | 20 | 502 | 15 | 521 | 2.34e-159 | 463 |
MS.gene04832.t1 | AT1G06800 | 58.924 | 353 | 135 | 7 | 74 | 420 | 85 | 433 | 2.75e-155 | 449 |
MS.gene04832.t1 | AT1G30370 | 42.222 | 405 | 217 | 7 | 74 | 473 | 114 | 506 | 1.80e-108 | 333 |
MS.gene04832.t1 | AT1G05800 | 42.350 | 366 | 185 | 9 | 59 | 419 | 66 | 410 | 3.18e-93 | 291 |
MS.gene04832.t1 | AT1G06250 | 38.049 | 410 | 223 | 6 | 74 | 474 | 5 | 392 | 7.98e-89 | 279 |
MS.gene04832.t1 | AT2G31690 | 40.568 | 387 | 206 | 10 | 66 | 447 | 80 | 447 | 4.27e-88 | 279 |
MS.gene04832.t1 | AT4G18550 | 36.029 | 408 | 232 | 4 | 76 | 475 | 21 | 407 | 7.92e-88 | 276 |
MS.gene04832.t1 | AT4G18550 | 36.029 | 408 | 232 | 4 | 76 | 475 | 38 | 424 | 1.03e-87 | 276 |
MS.gene04832.t1 | AT2G42690 | 34.834 | 422 | 226 | 6 | 77 | 475 | 7 | 402 | 1.98e-82 | 262 |
MS.gene04832.t1 | AT4G16820 | 40.404 | 396 | 195 | 13 | 55 | 436 | 110 | 478 | 8.16e-79 | 256 |
MS.gene04832.t1 | AT2G44810 | 35.204 | 392 | 215 | 10 | 62 | 434 | 72 | 443 | 1.57e-76 | 248 |
MS.gene04832.t1 | AT2G44810 | 36.486 | 370 | 198 | 9 | 82 | 434 | 4 | 353 | 6.71e-76 | 243 |
MS.gene04832.t1 | AT4G18550 | 37.818 | 275 | 165 | 2 | 76 | 344 | 38 | 312 | 8.90e-64 | 210 |
MS.gene04832.t1 | AT1G06250 | 36.789 | 299 | 163 | 3 | 181 | 474 | 1 | 278 | 1.46e-60 | 201 |
MS.gene04832.t1 | AT5G18640 | 31.148 | 183 | 90 | 10 | 182 | 359 | 89 | 240 | 3.10e-11 | 64.7 |
MS.gene04832.t1 | AT5G18640 | 31.148 | 183 | 90 | 10 | 182 | 359 | 89 | 240 | 7.89e-11 | 64.3 |
MS.gene04832.t1 | AT5G18640 | 31.148 | 183 | 90 | 10 | 182 | 359 | 89 | 240 | 7.89e-11 | 64.3 |
MS.gene04832.t1 | AT5G18640 | 31.148 | 183 | 90 | 10 | 182 | 359 | 101 | 252 | 8.69e-11 | 63.9 |
MS.gene04832.t1 | AT5G18640 | 31.148 | 183 | 90 | 10 | 182 | 359 | 101 | 252 | 8.69e-11 | 63.9 |
Find 121 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGAGATTGGAGAAACATTT+AGG | 0.169595 | 7.4:-13222652 | MS.gene04832:CDS |
CAAGGAATGTCTTGGTAAAT+AGG | 0.211928 | 7.4:+13222982 | None:intergenic |
ATTAGTTCAGATCGCATTAT+TGG | 0.219681 | 7.4:+13223604 | None:intergenic |
CGGTTAAATGTTAGGGAAAA+TGG | 0.236210 | 7.4:-13222739 | MS.gene04832:CDS |
TTCAAATCTTGCCTCCAATT+TGG | 0.241101 | 7.4:+13215985 | None:intergenic |
CGAGATTTCTTAAAGAAATC+TGG | 0.241938 | 7.4:+13223409 | None:intergenic |
GGACATTGCTTTGGTGAATA+AGG | 0.258869 | 7.4:-13216043 | MS.gene04832:CDS |
AAGAAAGTGGATTCGGATTT+GGG | 0.266472 | 7.4:+13223853 | None:intergenic |
GAAGAAAGTGGATTCGGATT+TGG | 0.267139 | 7.4:+13223852 | None:intergenic |
GTTGGGAACGTGAAATTTAA+AGG | 0.276041 | 7.4:-13222673 | MS.gene04832:CDS |
ACGTTAACGGGACATAGTTT+AGG | 0.282591 | 7.4:-13222805 | MS.gene04832:CDS |
GATATGAAGCGACAACTAAA+AGG | 0.286172 | 7.4:-13216065 | MS.gene04832:CDS |
CGTTAACGGGACATAGTTTA+GGG | 0.299251 | 7.4:-13222804 | MS.gene04832:CDS |
CAGAAACACGGTTAAATGTT+AGG | 0.300124 | 7.4:-13222747 | MS.gene04832:CDS |
ATTGGAGCGAACACGCAAAT+TGG | 0.300439 | 7.4:-13223372 | MS.gene04832:CDS |
ATGAAGAGATGAGTCCTATC+TGG | 0.311376 | 7.4:+13215866 | None:intergenic |
CTCGATGGCCAGATAAATAT+TGG | 0.316448 | 7.4:-13223390 | MS.gene04832:CDS |
GGAGATTGGAGAAACATTTA+GGG | 0.327887 | 7.4:-13222651 | MS.gene04832:CDS |
GGGTTATTGGTTGTGTTGTT+TGG | 0.337415 | 7.4:+13223800 | None:intergenic |
AAATCCACGGCGAAGATGAT+TGG | 0.340975 | 7.4:-13223651 | MS.gene04832:CDS |
GTAATACTAACTTCTTCATT+AGG | 0.342805 | 7.4:+13222826 | None:intergenic |
CGTGAAATTTAAAGGGAGAT+TGG | 0.344597 | 7.4:-13222665 | MS.gene04832:CDS |
TCCGAATCCACTTTCTTCTT+CGG | 0.346871 | 7.4:-13223847 | MS.gene04832:CDS |
GCAAGATTTGAATAGGAATA+TGG | 0.354087 | 7.4:-13215974 | MS.gene04832:CDS |
AGCACTCTGTGCCACCAAAT+TGG | 0.358258 | 7.4:-13215999 | MS.gene04832:CDS |
GAAGTTAGTATTACGTTAAC+GGG | 0.360874 | 7.4:-13222817 | MS.gene04832:CDS |
TTGTGTGATGGTGTTGGATT+GGG | 0.361021 | 7.4:+13223741 | None:intergenic |
TGTTCGCTCCAATATTTATC+TGG | 0.373590 | 7.4:+13223382 | None:intergenic |
ATTGGAGGCAAGATTTGAAT+AGG | 0.374370 | 7.4:-13215981 | MS.gene04832:CDS |
AAAATCAAATGCATCATAAC+AGG | 0.381110 | 7.4:+13223558 | None:intergenic |
GATCGCATTATTGGATCCAT+TGG | 0.395016 | 7.4:+13223613 | None:intergenic |
GCACATGCAGCATCAGCATT+AGG | 0.397000 | 7.4:+13222448 | None:intergenic |
CGATCTGAACTAATCCGTTA+TGG | 0.401938 | 7.4:-13223595 | MS.gene04832:CDS |
GTTGTGTGATGGTGTTGGAT+TGG | 0.409411 | 7.4:+13223740 | None:intergenic |
ATAAGAAACCCTGGTGACTT+TGG | 0.419814 | 7.4:+13222589 | None:intergenic |
AACTAAAAGGGACATTGCTT+TGG | 0.433662 | 7.4:-13216052 | MS.gene04832:CDS |
GGTTCATAATAAGCATGATA+TGG | 0.439973 | 7.4:-13222614 | MS.gene04832:CDS |
TGCTGCATGTGCTCATAACT+TGG | 0.440073 | 7.4:-13222437 | MS.gene04832:CDS |
AGAAACACGGTTAAATGTTA+GGG | 0.446331 | 7.4:-13222746 | MS.gene04832:CDS |
GATGGTGTTGGATTGGGTTG+TGG | 0.449723 | 7.4:+13223747 | None:intergenic |
TTGGAGTTGTGTGATGGTGT+TGG | 0.450815 | 7.4:+13223735 | None:intergenic |
GAATTTGAGGTGGTTGGAGT+TGG | 0.451070 | 7.4:+13223822 | None:intergenic |
TTGGATCCATTGGATTCAAA+AGG | 0.454906 | 7.4:+13223623 | None:intergenic |
AGAAGTTAGTATTACGTTAA+CGG | 0.458390 | 7.4:-13222818 | MS.gene04832:CDS |
TTGGGAACGTGAAATTTAAA+GGG | 0.459427 | 7.4:-13222672 | MS.gene04832:CDS |
TCCGAAGAAGAAAGTGGATT+CGG | 0.461681 | 7.4:+13223846 | None:intergenic |
AATCCACGGCGAAGATGATT+GGG | 0.467780 | 7.4:-13223650 | MS.gene04832:CDS |
CAAATGCATCATAACAGGCT+TGG | 0.470701 | 7.4:+13223563 | None:intergenic |
GAGCCTTATCTCTCCCAGAT+AGG | 0.471370 | 7.4:-13215880 | MS.gene04832:CDS |
TCTACTCGAACATCGTTGTC+TGG | 0.471524 | 7.4:+13222958 | None:intergenic |
GTTGTGTTGTTTGGAATTTG+AGG | 0.472244 | 7.4:+13223809 | None:intergenic |
TGTTGTTTCATCGTTTGAAA+CGG | 0.473023 | 7.4:+13223336 | None:intergenic |
CATATCCACGGTTGCTCCCA+TGG | 0.475119 | 7.4:+13216082 | None:intergenic |
CGAAGATGGACGTTGGGTGC+TGG | 0.476306 | 7.4:-13215944 | MS.gene04832:CDS |
TACTGAACTACCAATCGAAA+AGG | 0.478400 | 7.4:-13223683 | MS.gene04832:CDS |
AAATGCATCATAACAGGCTT+GGG | 0.481652 | 7.4:+13223564 | None:intergenic |
TGTTTGGAATTTGAGGTGGT+TGG | 0.484186 | 7.4:+13223816 | None:intergenic |
CAGCACCCAACGTCCATCTT+CGG | 0.497295 | 7.4:+13215945 | None:intergenic |
AAATCTTGCCTCCAATTTGG+TGG | 0.500957 | 7.4:+13215988 | None:intergenic |
CGTTAGATCTTCCACACATA+GGG | 0.505096 | 7.4:-13223477 | MS.gene04832:CDS |
GAGATTTCTTAAAGAAATCT+GGG | 0.505416 | 7.4:+13223410 | None:intergenic |
GATGAAACAACAAAACAGAT+AGG | 0.505936 | 7.4:-13223325 | MS.gene04832:intron |
TACTGTGACTCATGTTGAAT+GGG | 0.514995 | 7.4:-13223031 | MS.gene04832:CDS |
GTAGAGACGTCGTCGTTGCT+TGG | 0.515529 | 7.4:-13223059 | MS.gene04832:CDS |
GAGCGAACACGCAAATTGGA+TGG | 0.516239 | 7.4:-13223368 | MS.gene04832:CDS |
GATATGGTGCCAAAGTCACC+AGG | 0.523665 | 7.4:-13222598 | MS.gene04832:CDS |
TGTTGGAGTTGAGTTAGAGT+TGG | 0.525724 | 7.4:-13222497 | MS.gene04832:CDS |
TTGTGATTGGAGTTGTGTGA+TGG | 0.526790 | 7.4:+13223729 | None:intergenic |
AATATGGTGAAGACCGAAGA+TGG | 0.533831 | 7.4:-13215958 | MS.gene04832:CDS |
AACGATGTTCGAGTAGAAGC+AGG | 0.537151 | 7.4:-13222952 | MS.gene04832:CDS |
GATGAGTATCTGCAAGTTGT+GGG | 0.543513 | 7.4:+13215914 | None:intergenic |
TAGTTGTCGCTTCATATCCA+CGG | 0.544561 | 7.4:+13216070 | None:intergenic |
CTGAGGATATTGATATTCCA+TGG | 0.547347 | 7.4:-13222531 | MS.gene04832:CDS |
AATTTCACGTTCCCAACCCT+AGG | 0.553515 | 7.4:+13222679 | None:intergenic |
AAGGCATGGCGCAAAATCCA+CGG | 0.553577 | 7.4:-13223664 | MS.gene04832:CDS |
AGTGGATTCGGATTTGGGAA+AGG | 0.556138 | 7.4:+13223858 | None:intergenic |
TGCATGTGCTCATAACTTGG+AGG | 0.557550 | 7.4:-13222434 | MS.gene04832:CDS |
TCGTTAGATCTTCCACACAT+AGG | 0.560088 | 7.4:-13223478 | MS.gene04832:CDS |
TGATGATGAGCAGGTACCAT+GGG | 0.560215 | 7.4:-13216098 | MS.gene04832:intron |
AGTCCTATCTGGGAGAGATA+AGG | 0.560550 | 7.4:+13215877 | None:intergenic |
ACTCTGTGCCACCAAATTGG+AGG | 0.560687 | 7.4:-13215996 | MS.gene04832:CDS |
ATATGAAGCGACAACTAAAA+GGG | 0.562797 | 7.4:-13216064 | MS.gene04832:CDS |
GATCCATATTCAAAATATTG+TGG | 0.563766 | 7.4:-13223535 | MS.gene04832:CDS |
ACCCATCGAGTATGTGCAAG+TGG | 0.565551 | 7.4:+13222410 | None:intergenic |
GCCCACTTGCACATACTCGA+TGG | 0.566632 | 7.4:-13222412 | MS.gene04832:CDS |
CGAACATCGTTGTCTGGACA+AGG | 0.568633 | 7.4:+13222964 | None:intergenic |
CCATGGTGTTACACTCATGT+TGG | 0.572004 | 7.4:-13222514 | MS.gene04832:CDS |
GAAGACCGAAGATGGACGTT+GGG | 0.573919 | 7.4:-13215950 | MS.gene04832:CDS |
GTACTGTGACTCATGTTGAA+TGG | 0.574716 | 7.4:-13223032 | MS.gene04832:CDS |
GTTGGATCCGAAGAAGAAAG+TGG | 0.577003 | 7.4:+13223840 | None:intergenic |
TTCTCATTAATAAGAAACCC+TGG | 0.577571 | 7.4:+13222580 | None:intergenic |
TGAAGAGATGAGTCCTATCT+GGG | 0.580441 | 7.4:+13215867 | None:intergenic |
GTGTTGTTTGGAATTTGAGG+TGG | 0.580769 | 7.4:+13223812 | None:intergenic |
AGCGAACACGCAAATTGGAT+GGG | 0.585489 | 7.4:-13223367 | MS.gene04832:CDS |
TGATGAGTATCTGCAAGTTG+TGG | 0.587655 | 7.4:+13215913 | None:intergenic |
ACCGATAGACAAACAAAAGA+CGG | 0.593031 | 7.4:-13222913 | MS.gene04832:CDS |
CTTGGGACATCTCTCCATAA+CGG | 0.598290 | 7.4:+13223581 | None:intergenic |
GACGTCGTCGTTGCTTGGCG+AGG | 0.598300 | 7.4:-13223054 | MS.gene04832:CDS |
GTGGTTATTAAAGTTTGCTG+AGG | 0.600416 | 7.4:-13222548 | MS.gene04832:CDS |
AACTACCAATCGAAAAGGCA+TGG | 0.602251 | 7.4:-13223678 | MS.gene04832:CDS |
CACGGCGAAGATGATTGGGT+TGG | 0.611314 | 7.4:-13223646 | MS.gene04832:CDS |
ACATAGTTTAGGGAGTGCTA+TGG | 0.614629 | 7.4:-13222794 | MS.gene04832:CDS |
TGTGTGGAAGATCTAACGAT+GGG | 0.619407 | 7.4:+13223482 | None:intergenic |
CCCACTTGCACATACTCGAT+GGG | 0.620876 | 7.4:-13222411 | MS.gene04832:intron |
TTGATGATGAGCAGGTACCA+TGG | 0.623853 | 7.4:-13216099 | MS.gene04832:intron |
GTCACGTCATACCCTATGTG+TGG | 0.628012 | 7.4:+13223466 | None:intergenic |
TAACATTTGCTGTGGCGTAG+AGG | 0.633479 | 7.4:+13223437 | None:intergenic |
TGGGACGTTAACATTTGCTG+TGG | 0.637969 | 7.4:+13223429 | None:intergenic |
TGTCTGGACAAGGAATGTCT+TGG | 0.642553 | 7.4:+13222974 | None:intergenic |
CGTTTGATATAGCAGAAACA+CGG | 0.643367 | 7.4:-13222759 | MS.gene04832:CDS |
AGGTACCATGGGAGCAACCG+TGG | 0.651704 | 7.4:-13216087 | MS.gene04832:CDS |
GAGATTGGAGAAACATTTAG+GGG | 0.658549 | 7.4:-13222650 | MS.gene04832:CDS |
ATTTCTTTAAGAAATCTCGA+TGG | 0.659322 | 7.4:-13223405 | MS.gene04832:CDS |
CCCATCGAGTATGTGCAAGT+GGG | 0.660658 | 7.4:+13222411 | None:intergenic |
TTAATGAGAAATCGCCTGAG+TGG | 0.664008 | 7.4:-13222567 | MS.gene04832:CDS |
GCAAACTTTAATAACCACTC+AGG | 0.666053 | 7.4:+13222553 | None:intergenic |
CCAACATGAGTGTAACACCA+TGG | 0.679476 | 7.4:+13222514 | None:intergenic |
CAACCCAATCATCTTCGCCG+TGG | 0.687806 | 7.4:+13223647 | None:intergenic |
ATGTGTGGAAGATCTAACGA+TGG | 0.689828 | 7.4:+13223481 | None:intergenic |
TGAAGACCGAAGATGGACGT+TGG | 0.699979 | 7.4:-13215951 | MS.gene04832:CDS |
ATATGGTGCCAAAGTCACCA+GGG | 0.760395 | 7.4:-13222597 | MS.gene04832:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 13215855 | 13223911 | 13215855 | ID=MS.gene04832 |
chr7.4 | mRNA | 13215855 | 13223911 | 13215855 | ID=MS.gene04832.t1;Parent=MS.gene04832 |
chr7.4 | exon | 13223326 | 13223911 | 13223326 | ID=MS.gene04832.t1.exon1;Parent=MS.gene04832.t1 |
chr7.4 | CDS | 13223326 | 13223911 | 13223326 | ID=cds.MS.gene04832.t1;Parent=MS.gene04832.t1 |
chr7.4 | exon | 13222412 | 13223084 | 13222412 | ID=MS.gene04832.t1.exon2;Parent=MS.gene04832.t1 |
chr7.4 | CDS | 13222412 | 13223084 | 13222412 | ID=cds.MS.gene04832.t1;Parent=MS.gene04832.t1 |
chr7.4 | exon | 13215855 | 13216107 | 13215855 | ID=MS.gene04832.t1.exon3;Parent=MS.gene04832.t1 |
chr7.4 | CDS | 13215855 | 13216107 | 13215855 | ID=cds.MS.gene04832.t1;Parent=MS.gene04832.t1 |
Gene Sequence |
Protein sequence |