AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049012

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049012.t1 MTR_8g101570 93.493 292 13 1 1 292 1 286 0.0 555
MS.gene049012.t1 MTR_6g092660 59.333 300 108 4 1 293 1 293 1.07e-121 350
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049012.t1 AT2G19570 57.003 307 108 5 1 292 1 298 7.40e-117 338
MS.gene049012.t1 AT4G29600 49.020 306 133 7 2 295 5 299 2.63e-90 271
MS.gene049012.t1 AT4G29610 50.365 274 120 5 28 292 21 287 8.73e-89 266
MS.gene049012.t1 AT4G29620 45.395 304 139 7 2 295 26 312 5.15e-78 241
MS.gene049012.t1 AT4G29640 43.206 287 147 7 16 292 13 293 2.48e-64 206
MS.gene049012.t1 AT4G29630 48.918 231 97 5 2 222 4 223 4.44e-62 196
MS.gene049012.t1 AT4G29570 42.446 278 141 7 26 292 23 292 5.23e-58 188
MS.gene049012.t1 AT4G29650 38.062 289 127 7 6 292 7 245 7.79e-49 163
MS.gene049012.t1 AT4G29580 39.726 292 151 10 4 282 7 286 1.01e-48 164
MS.gene049012.t1 AT4G29580 39.726 292 151 10 4 282 7 286 1.20e-47 165

Find 112 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGACAGAGAAGTGAAATT+TGG 0.221554 4.1:-3598175 None:intergenic
GACAGCTCCGACGTGGAAAT+TGG 0.275635 4.1:-3597918 None:intergenic
CGGGTGCTCCGCGGATTTCT+TGG 0.278140 4.1:-3598120 None:intergenic
TCCTAGTTTGGGTCCACTTC+AGG 0.295916 4.1:+3598480 MS.gene049012:CDS
TGAAGATTTGGCCATGGATT+TGG 0.298830 4.1:-3597825 None:intergenic
TGGGTGGTCGGGCGAGGGAT+TGG 0.308461 4.1:-3597892 None:intergenic
AAAGTCTGCAATTGACATTT+AGG 0.308869 4.1:-3598634 None:intergenic
GGTAATGATGATTTGAATAT+CGG 0.323221 4.1:-3598140 None:intergenic
GGGTGGTCGGGCGAGGGATT+GGG 0.334841 4.1:-3597891 None:intergenic
GGCGGCGTTTAATCCTAGTT+TGG 0.341522 4.1:+3598468 MS.gene049012:CDS
CCAGATGGTGAATTACTATA+AGG 0.358174 4.1:-3598391 None:intergenic
GAGAGTGAGGGATGAAGATT+TGG 0.361013 4.1:-3597837 None:intergenic
GCGGCGTTTAATCCTAGTTT+GGG 0.380242 4.1:+3598469 MS.gene049012:CDS
CCTTATAGTAATTCACCATC+TGG 0.384670 4.1:+3598391 MS.gene049012:CDS
GAGACAGAGAAGTGAAATTT+GGG 0.388256 4.1:-3598174 None:intergenic
GGATTTCTTGGAAGAATTGC+CGG 0.395040 4.1:-3598108 None:intergenic
TCCACTTCAGGCTGCGGTGG+TGG 0.397270 4.1:+3598492 MS.gene049012:CDS
GAATTGCCGGCAGTGGCCAC+AGG 0.404218 4.1:-3598095 None:intergenic
CCGGCAGTGGCCACAGGGAG+CGG 0.421277 4.1:-3598089 None:intergenic
GCGTTTATTGTCGCCGGCGG+CGG 0.423175 4.1:+3598514 MS.gene049012:CDS
GATAGTTTCTCTGTTGTTAA+CGG 0.423842 4.1:-3598289 None:intergenic
GACGGCAAATGAGTGGAGAT+TGG 0.429471 4.1:-3598062 None:intergenic
TGACAAGTGATGGGAGGAGT+TGG 0.430025 4.1:-3597862 None:intergenic
GGAGGAGTTGGGTGAGAGTG+AGG 0.430382 4.1:-3597850 None:intergenic
TTTGGCCATGGATTTGGCTT+CGG 0.430920 4.1:-3597819 None:intergenic
CCATCGGGTCGGATCTTAAT+CGG 0.432605 4.1:+3597950 MS.gene049012:CDS
TGGAGATGGGTGGTCGGGCG+AGG 0.432898 4.1:-3597898 None:intergenic
TCGGGCGAGGGATTGGGCGG+AGG 0.439797 4.1:-3597885 None:intergenic
AGTGAAATTTGGGTCAGATT+CGG 0.443529 4.1:-3598164 None:intergenic
GAAGCTAAAGATTGCGGCTA+TGG 0.452033 4.1:+3598345 MS.gene049012:CDS
GAAATTGGAGATGGGTGGTC+GGG 0.455841 4.1:-3597903 None:intergenic
CCGCTCCCTGTGGCCACTGC+CGG 0.461973 4.1:+3598089 MS.gene049012:CDS
AGTGATGAAGAGGGAGGCCT+GGG 0.468579 4.1:-3597988 None:intergenic
TAAAGGATCTTATGTTGAAT+CGG 0.470270 4.1:+3598447 MS.gene049012:CDS
CTTGGAAGAATTGCCGGCAG+TGG 0.473200 4.1:-3598102 None:intergenic
TGGGCGGAGGTGACAAGTGA+TGG 0.473273 4.1:-3597872 None:intergenic
GACAAGTGATGGGAGGAGTT+GGG 0.474173 4.1:-3597861 None:intergenic
GAGAAACTGTTCGGCGTGGA+TGG 0.474486 4.1:-3598011 None:intergenic
ACGGCAAATGAGTGGAGATT+GGG 0.480319 4.1:-3598061 None:intergenic
GAGTGATGAAGAGGGAGGCC+TGG 0.482748 4.1:-3597989 None:intergenic
ATCACCGTTGCAAACGCCAT+TGG 0.486585 4.1:-3598311 None:intergenic
ACCATCTGGGATGGCGATTG+TGG 0.487559 4.1:+3598405 MS.gene049012:CDS
GCCACAGGGAGCGGCGGAGA+CGG 0.489161 4.1:-3598080 None:intergenic
GGCCATGGATTTGGCTTCGG+TGG 0.493035 4.1:-3597816 None:intergenic
AATTTCCACGTCGGAGCTGT+CGG 0.496820 4.1:+3597920 MS.gene049012:CDS
AAAACAGAGGAGCGTGTTGA+GGG 0.498221 4.1:-3598234 None:intergenic
GCCACCACCGCAGCCTGAAG+TGG 0.499126 4.1:-3598493 None:intergenic
CCGATTAAGATCCGACCCGA+TGG 0.499542 4.1:-3597950 None:intergenic
CGGAAGAAGCTTTAACCCGT+TGG 0.502023 4.1:-3598269 None:intergenic
TGGTCGGGCGAGGGATTGGG+CGG 0.511129 4.1:-3597888 None:intergenic
GTAATGATGATTTGAATATC+GGG 0.511400 4.1:-3598139 None:intergenic
CGATTAAGATCCGACCCGAT+GGG 0.512765 4.1:-3597949 None:intergenic
GGAGATGGGTGGTCGGGCGA+GGG 0.514417 4.1:-3597897 None:intergenic
ATTTGTGAGGAGAAACTGTT+CGG 0.519896 4.1:-3598020 None:intergenic
GGAAATTGGAGATGGGTGGT+CGG 0.522634 4.1:-3597904 None:intergenic
TTTGGGTCCACTTCAGGCTG+CGG 0.527847 4.1:+3598486 MS.gene049012:CDS
GGGTCCACTTCAGGCTGCGG+TGG 0.535705 4.1:+3598489 MS.gene049012:CDS
GTGGTGGCGTTTATTGTCGC+CGG 0.545550 4.1:+3598508 MS.gene049012:CDS
TCCGACGTGGAAATTGGAGA+TGG 0.546314 4.1:-3597912 None:intergenic
TCGTGTGGTCCAAATCTGTA+AGG 0.546455 4.1:-3598205 None:intergenic
GAGGGATGAAGATTTGGCCA+TGG 0.547112 4.1:-3597831 None:intergenic
GAGGAGTTGGGTGAGAGTGA+GGG 0.549562 4.1:-3597849 None:intergenic
GGCCATTGATCATTCATCAA+AGG 0.550701 4.1:-3598665 None:intergenic
GAGATTGGGTTCGTCGTGGA+GGG 0.551352 4.1:-3598047 None:intergenic
GGGCGGAGGTGACAAGTGAT+GGG 0.554215 4.1:-3597871 None:intergenic
TGAGATCGTGGGTGCTGTGT+TGG 0.554657 4.1:+3598546 MS.gene049012:CDS
AGCTGTCGGATTATCCCCAT+CGG 0.556466 4.1:+3597934 MS.gene049012:CDS
GCTAAAGATTGCGGCTATGG+AGG 0.558173 4.1:+3598348 MS.gene049012:CDS
ATGGCGATTGTGGATTGTAA+TGG 0.559387 4.1:+3598415 MS.gene049012:CDS
GATCGTGGGTGCTGTGTTGG+TGG 0.562554 4.1:+3598549 MS.gene049012:CDS
AGCTTTAACCCGTTGGTGCG+TGG 0.562632 4.1:-3598262 None:intergenic
GGAGTCAATGTCGAATTCCC+AGG 0.562922 4.1:+3597971 MS.gene049012:CDS
GGAGATTGGGTTCGTCGTGG+AGG 0.563710 4.1:-3598048 None:intergenic
CGGCGGAGACGGCAAATGAG+TGG 0.568502 4.1:-3598069 None:intergenic
CGGTAAGTATGATGAGATCG+TGG 0.575614 4.1:+3598534 MS.gene049012:CDS
GCCTGAAGTGGACCCAAACT+AGG 0.578685 4.1:-3598481 None:intergenic
CTTATAGTAATTCACCATCT+GGG 0.578783 4.1:+3598392 MS.gene049012:CDS
AGCCACCGAAGCCAAATCCA+TGG 0.582069 4.1:+3597814 MS.gene049012:CDS
CGTGGATGGAGTGATGAAGA+GGG 0.588357 4.1:-3597997 None:intergenic
CTATCCAATGGCGTTTGCAA+CGG 0.589084 4.1:+3598307 MS.gene049012:CDS
CTCATCATACTTACCGCCGC+CGG 0.591519 4.1:-3598527 None:intergenic
CCGACGTGGAAATTGGAGAT+GGG 0.591562 4.1:-3597911 None:intergenic
GAAATTTGGGTCAGATTCGG+AGG 0.592488 4.1:-3598161 None:intergenic
TAGTAATTCACCATCTGGGA+TGG 0.593503 4.1:+3598396 MS.gene049012:CDS
GCCGTCTCCGCCGCTCCCTG+TGG 0.593913 4.1:+3598079 MS.gene049012:CDS
GCGTGGATGGAGTGATGAAG+AGG 0.599358 4.1:-3597998 None:intergenic
GCTGTCGGATTATCCCCATC+GGG 0.602496 4.1:+3597935 MS.gene049012:CDS
GCAGTGGCCACAGGGAGCGG+CGG 0.603868 4.1:-3598086 None:intergenic
AATTGCCGGCAGTGGCCACA+GGG 0.607932 4.1:-3598094 None:intergenic
CGGAGGTGACAAGTGATGGG+AGG 0.610703 4.1:-3597868 None:intergenic
TCCACAATCGCCATCCCAGA+TGG 0.613085 4.1:-3598406 None:intergenic
CGGAGCTATGGTGAAACAAG+AGG 0.615878 4.1:+3598579 MS.gene049012:CDS
GGTAAGTATGATGAGATCGT+GGG 0.617309 4.1:+3598535 MS.gene049012:CDS
GATTAAGATCCGACCCGATG+GGG 0.619338 4.1:-3597948 None:intergenic
GGTGGAGAAAGACGGAGCTA+TGG 0.623714 4.1:+3598567 MS.gene049012:CDS
TCGGATTATCCCCATCGGGT+CGG 0.633245 4.1:+3597939 MS.gene049012:CDS
GTGGCGTTTATTGTCGCCGG+CGG 0.634221 4.1:+3598511 MS.gene049012:CDS
GGAGCTATGGTGAAACAAGA+GGG 0.637476 4.1:+3598580 MS.gene049012:CDS
TCATGAGAAGCTAAAGATTG+CGG 0.637485 4.1:+3598339 MS.gene049012:CDS
TTTGAATATCGGGTGCTCCG+CGG 0.650008 4.1:-3598129 None:intergenic
AGTGGAGATTGGGTTCGTCG+TGG 0.655961 4.1:-3598051 None:intergenic
ACGTGGAAATTGGAGATGGG+TGG 0.657179 4.1:-3597908 None:intergenic
ACAACAGAGAAACTATCCAA+TGG 0.665950 4.1:+3598295 MS.gene049012:CDS
AGGATCTTATGTTGAATCGG+CGG 0.667327 4.1:+3598450 MS.gene049012:CDS
CAATTCTTCCAAGAAATCCG+CGG 0.668096 4.1:+3598112 MS.gene049012:CDS
ATAATCCGACAGCTCCGACG+TGG 0.676269 4.1:-3597925 None:intergenic
CCCATCTCCAATTTCCACGT+CGG 0.677245 4.1:+3597911 MS.gene049012:CDS
GCTGTGTTGGTGGAGAAAGA+CGG 0.682938 4.1:+3598559 MS.gene049012:CDS
TGAGGAGAAACTGTTCGGCG+TGG 0.685610 4.1:-3598015 None:intergenic
CGTGGAGGGAGAGATTTGTG+AGG 0.692173 4.1:-3598033 None:intergenic
GGATGGAGTGATGAAGAGGG+AGG 0.695700 4.1:-3597994 None:intergenic
TGTTGAGGGAGAAGATCGTG+TGG 0.703420 4.1:-3598220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAATGGAAAAATCTATAA+AGG + chr4.1:3598430-3598449 MS.gene049012:CDS 20.0%
! GGTAATGATGATTTGAATAT+CGG - chr4.1:3598143-3598162 None:intergenic 25.0%
! GTAATGATGATTTGAATATC+GGG - chr4.1:3598142-3598161 None:intergenic 25.0%
! TAAAGGATCTTATGTTGAAT+CGG + chr4.1:3598447-3598466 MS.gene049012:CDS 25.0%
AAAGTCTGCAATTGACATTT+AGG - chr4.1:3598637-3598656 None:intergenic 30.0%
CTTATAGTAATTCACCATCT+GGG + chr4.1:3598392-3598411 MS.gene049012:CDS 30.0%
GATAGTTTCTCTGTTGTTAA+CGG - chr4.1:3598292-3598311 None:intergenic 30.0%
! CATTTTCTTCCTTACAGATT+TGG + chr4.1:3598196-3598215 MS.gene049012:CDS 30.0%
ACAACAGAGAAACTATCCAA+TGG + chr4.1:3598295-3598314 MS.gene049012:CDS 35.0%
AGTGAAATTTGGGTCAGATT+CGG - chr4.1:3598167-3598186 None:intergenic 35.0%
ATTTGTGAGGAGAAACTGTT+CGG - chr4.1:3598023-3598042 None:intergenic 35.0%
CCAGATGGTGAATTACTATA+AGG - chr4.1:3598394-3598413 None:intergenic 35.0%
CCTTATAGTAATTCACCATC+TGG + chr4.1:3598391-3598410 MS.gene049012:CDS 35.0%
GAGACAGAGAAGTGAAATTT+GGG - chr4.1:3598177-3598196 None:intergenic 35.0%
TCATGAGAAGCTAAAGATTG+CGG + chr4.1:3598339-3598358 MS.gene049012:CDS 35.0%
TGAGACAGAGAAGTGAAATT+TGG - chr4.1:3598178-3598197 None:intergenic 35.0%
AGGATCTTATGTTGAATCGG+CGG + chr4.1:3598450-3598469 MS.gene049012:CDS 40.0%
CAATTCTTCCAAGAAATCCG+CGG + chr4.1:3598112-3598131 MS.gene049012:CDS 40.0%
GGATTTCTTGGAAGAATTGC+CGG - chr4.1:3598111-3598130 None:intergenic 40.0%
GGTAAGTATGATGAGATCGT+GGG + chr4.1:3598535-3598554 MS.gene049012:CDS 40.0%
GGTGGCTTCGATAACAAAAA+CGG - chr4.1:3597801-3597820 None:intergenic 40.0%
GTGGCTTCGATAACAAAAAC+GGG - chr4.1:3597800-3597819 None:intergenic 40.0%
TAGTAATTCACCATCTGGGA+TGG + chr4.1:3598396-3598415 MS.gene049012:CDS 40.0%
TGAAGATTTGGCCATGGATT+TGG - chr4.1:3597828-3597847 None:intergenic 40.0%
! ATGGCGATTGTGGATTGTAA+TGG + chr4.1:3598415-3598434 MS.gene049012:CDS 40.0%
ACGGCAAATGAGTGGAGATT+GGG - chr4.1:3598064-3598083 None:intergenic 45.0%
CGGTAAGTATGATGAGATCG+TGG + chr4.1:3598534-3598553 MS.gene049012:CDS 45.0%
CTATCCAATGGCGTTTGCAA+CGG + chr4.1:3598307-3598326 MS.gene049012:CDS 45.0%
GAAATTTGGGTCAGATTCGG+AGG - chr4.1:3598164-3598183 None:intergenic 45.0%
GAAGCTAAAGATTGCGGCTA+TGG + chr4.1:3598345-3598364 MS.gene049012:CDS 45.0%
GAGAGTGAGGGATGAAGATT+TGG - chr4.1:3597840-3597859 None:intergenic 45.0%
GCGGCGTTTAATCCTAGTTT+GGG + chr4.1:3598469-3598488 MS.gene049012:CDS 45.0%
GGAGCTATGGTGAAACAAGA+GGG + chr4.1:3598580-3598599 MS.gene049012:CDS 45.0%
TCGTGTGGTCCAAATCTGTA+AGG - chr4.1:3598208-3598227 None:intergenic 45.0%
! AAAAACAGAGGAGCGTGTTG+AGG - chr4.1:3598238-3598257 None:intergenic 45.0%
! AAAACAGAGGAGCGTGTTGA+GGG - chr4.1:3598237-3598256 None:intergenic 45.0%
! TCAACACGCTCCTCTGTTTT+TGG + chr4.1:3598237-3598256 MS.gene049012:CDS 45.0%
! TTTGGCCATGGATTTGGCTT+CGG - chr4.1:3597822-3597841 None:intergenic 45.0%
!!! TTTTTGGAACCACGCACCAA+CGG + chr4.1:3598253-3598272 MS.gene049012:CDS 45.0%
AATTTCCACGTCGGAGCTGT+CGG + chr4.1:3597920-3597939 MS.gene049012:CDS 50.0%
ACGTGGAAATTGGAGATGGG+TGG - chr4.1:3597911-3597930 None:intergenic 50.0%
AGCTGTCGGATTATCCCCAT+CGG + chr4.1:3597934-3597953 MS.gene049012:CDS 50.0%
ATCACCGTTGCAAACGCCAT+TGG - chr4.1:3598314-3598333 None:intergenic 50.0%
CCATCGGGTCGGATCTTAAT+CGG + chr4.1:3597950-3597969 MS.gene049012:CDS 50.0%
CCCATCTCCAATTTCCACGT+CGG + chr4.1:3597911-3597930 MS.gene049012:CDS 50.0%
CCGACGTGGAAATTGGAGAT+GGG - chr4.1:3597914-3597933 None:intergenic 50.0%
CGATTAAGATCCGACCCGAT+GGG - chr4.1:3597952-3597971 None:intergenic 50.0%
CGGAGCTATGGTGAAACAAG+AGG + chr4.1:3598579-3598598 MS.gene049012:CDS 50.0%
CGTGGATGGAGTGATGAAGA+GGG - chr4.1:3598000-3598019 None:intergenic 50.0%
GAAATTGGAGATGGGTGGTC+GGG - chr4.1:3597906-3597925 None:intergenic 50.0%
GACGGCAAATGAGTGGAGAT+TGG - chr4.1:3598065-3598084 None:intergenic 50.0%
GAGGGATGAAGATTTGGCCA+TGG - chr4.1:3597834-3597853 None:intergenic 50.0%
GATTAAGATCCGACCCGATG+GGG - chr4.1:3597951-3597970 None:intergenic 50.0%
GCTAAAGATTGCGGCTATGG+AGG + chr4.1:3598348-3598367 MS.gene049012:CDS 50.0%
GGAAATTGGAGATGGGTGGT+CGG - chr4.1:3597907-3597926 None:intergenic 50.0%
GGAGTCAATGTCGAATTCCC+AGG + chr4.1:3597971-3597990 MS.gene049012:CDS 50.0%
GGCGGCGTTTAATCCTAGTT+TGG + chr4.1:3598468-3598487 MS.gene049012:CDS 50.0%
GTGCGTGGTTCCAAAAACAG+AGG - chr4.1:3598250-3598269 None:intergenic 50.0%
TCCGACGTGGAAATTGGAGA+TGG - chr4.1:3597915-3597934 None:intergenic 50.0%
TCCTAGTTTGGGTCCACTTC+AGG + chr4.1:3598480-3598499 MS.gene049012:CDS 50.0%
TGTTGAGGGAGAAGATCGTG+TGG - chr4.1:3598223-3598242 None:intergenic 50.0%
TTTGAATATCGGGTGCTCCG+CGG - chr4.1:3598132-3598151 None:intergenic 50.0%
! CGGAAGAAGCTTTAACCCGT+TGG - chr4.1:3598272-3598291 None:intergenic 50.0%
! GACAAGTGATGGGAGGAGTT+GGG - chr4.1:3597864-3597883 None:intergenic 50.0%
! GCTGTGTTGGTGGAGAAAGA+CGG + chr4.1:3598559-3598578 MS.gene049012:CDS 50.0%
! TGACAAGTGATGGGAGGAGT+TGG - chr4.1:3597865-3597884 None:intergenic 50.0%
!!! TTTTGGAACCACGCACCAAC+GGG + chr4.1:3598254-3598273 MS.gene049012:CDS 50.0%
AGCCACCGAAGCCAAATCCA+TGG + chr4.1:3597814-3597833 MS.gene049012:CDS 55.0%
AGTGATGAAGAGGGAGGCCT+GGG - chr4.1:3597991-3598010 None:intergenic 55.0%
AGTGGAGATTGGGTTCGTCG+TGG - chr4.1:3598054-3598073 None:intergenic 55.0%
ATAATCCGACAGCTCCGACG+TGG - chr4.1:3597928-3597947 None:intergenic 55.0%
CCGATTAAGATCCGACCCGA+TGG - chr4.1:3597953-3597972 None:intergenic 55.0%
CGTGGAGGGAGAGATTTGTG+AGG - chr4.1:3598036-3598055 None:intergenic 55.0%
CTCATCATACTTACCGCCGC+CGG - chr4.1:3598530-3598549 None:intergenic 55.0%
CTTGGAAGAATTGCCGGCAG+TGG - chr4.1:3598105-3598124 None:intergenic 55.0%
GACAGCTCCGACGTGGAAAT+TGG - chr4.1:3597921-3597940 None:intergenic 55.0%
GAGAAACTGTTCGGCGTGGA+TGG - chr4.1:3598014-3598033 None:intergenic 55.0%
GAGATTGGGTTCGTCGTGGA+GGG - chr4.1:3598050-3598069 None:intergenic 55.0%
GAGGAGTTGGGTGAGAGTGA+GGG - chr4.1:3597852-3597871 None:intergenic 55.0%
GCCTGAAGTGGACCCAAACT+AGG - chr4.1:3598484-3598503 None:intergenic 55.0%
GCGTGGATGGAGTGATGAAG+AGG - chr4.1:3598001-3598020 None:intergenic 55.0%
GCTGTCGGATTATCCCCATC+GGG + chr4.1:3597935-3597954 MS.gene049012:CDS 55.0%
GGATGGAGTGATGAAGAGGG+AGG - chr4.1:3597997-3598016 None:intergenic 55.0%
GGTGGAGAAAGACGGAGCTA+TGG + chr4.1:3598567-3598586 MS.gene049012:CDS 55.0%
TCCACAATCGCCATCCCAGA+TGG - chr4.1:3598409-3598428 None:intergenic 55.0%
TCGGATTATCCCCATCGGGT+CGG + chr4.1:3597939-3597958 MS.gene049012:CDS 55.0%
TGAGGAGAAACTGTTCGGCG+TGG - chr4.1:3598018-3598037 None:intergenic 55.0%
TTTGGGTCCACTTCAGGCTG+CGG + chr4.1:3598486-3598505 MS.gene049012:CDS 55.0%
! ACCATCTGGGATGGCGATTG+TGG + chr4.1:3598405-3598424 MS.gene049012:CDS 55.0%
! AGCTTTAACCCGTTGGTGCG+TGG - chr4.1:3598265-3598284 None:intergenic 55.0%
! GTGGTGGCGTTTATTGTCGC+CGG + chr4.1:3598508-3598527 MS.gene049012:CDS 55.0%
! TGAGATCGTGGGTGCTGTGT+TGG + chr4.1:3598546-3598565 MS.gene049012:CDS 55.0%
AATTGCCGGCAGTGGCCACA+GGG - chr4.1:3598097-3598116 None:intergenic 60.0%
GAGTGATGAAGAGGGAGGCC+TGG - chr4.1:3597992-3598011 None:intergenic 60.0%
GGAGATTGGGTTCGTCGTGG+AGG - chr4.1:3598051-3598070 None:intergenic 60.0%
GGAGGAGTTGGGTGAGAGTG+AGG - chr4.1:3597853-3597872 None:intergenic 60.0%
GGGCGGAGGTGACAAGTGAT+GGG - chr4.1:3597874-3597893 None:intergenic 60.0%
GTGGCGTTTATTGTCGCCGG+CGG + chr4.1:3598511-3598530 MS.gene049012:CDS 60.0%
TGGGCGGAGGTGACAAGTGA+TGG - chr4.1:3597875-3597894 None:intergenic 60.0%
! CGGAGGTGACAAGTGATGGG+AGG - chr4.1:3597871-3597890 None:intergenic 60.0%
! GATCGTGGGTGCTGTGTTGG+TGG + chr4.1:3598549-3598568 MS.gene049012:CDS 60.0%
! GGCCATGGATTTGGCTTCGG+TGG - chr4.1:3597819-3597838 None:intergenic 60.0%
CGGCGGAGACGGCAAATGAG+TGG - chr4.1:3598072-3598091 None:intergenic 65.0%
CGGGTGCTCCGCGGATTTCT+TGG - chr4.1:3598123-3598142 None:intergenic 65.0%
GAATTGCCGGCAGTGGCCAC+AGG - chr4.1:3598098-3598117 None:intergenic 65.0%
GCGTTTATTGTCGCCGGCGG+CGG + chr4.1:3598514-3598533 MS.gene049012:CDS 65.0%
TCCACTTCAGGCTGCGGTGG+TGG + chr4.1:3598492-3598511 MS.gene049012:CDS 65.0%
GCCACCACCGCAGCCTGAAG+TGG - chr4.1:3598496-3598515 None:intergenic 70.0%
GGAGATGGGTGGTCGGGCGA+GGG - chr4.1:3597900-3597919 None:intergenic 70.0%
GGGTCCACTTCAGGCTGCGG+TGG + chr4.1:3598489-3598508 MS.gene049012:CDS 70.0%
GGGTGGTCGGGCGAGGGATT+GGG - chr4.1:3597894-3597913 None:intergenic 70.0%
TGGAGATGGGTGGTCGGGCG+AGG - chr4.1:3597901-3597920 None:intergenic 70.0%
TGGGTGGTCGGGCGAGGGAT+TGG - chr4.1:3597895-3597914 None:intergenic 70.0%
TGGTCGGGCGAGGGATTGGG+CGG - chr4.1:3597891-3597910 None:intergenic 70.0%
CCGCTCCCTGTGGCCACTGC+CGG + chr4.1:3598089-3598108 MS.gene049012:CDS 75.0%
CCGGCAGTGGCCACAGGGAG+CGG - chr4.1:3598092-3598111 None:intergenic 75.0%
GCAGTGGCCACAGGGAGCGG+CGG - chr4.1:3598089-3598108 None:intergenic 75.0%
GCCACAGGGAGCGGCGGAGA+CGG - chr4.1:3598083-3598102 None:intergenic 75.0%
TCGGGCGAGGGATTGGGCGG+AGG - chr4.1:3597888-3597907 None:intergenic 75.0%
! GCCGTCTCCGCCGCTCCCTG+TGG + chr4.1:3598079-3598098 MS.gene049012:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 3597788 3598678 3597788 ID=MS.gene049012
chr4.1 mRNA 3597788 3598678 3597788 ID=MS.gene049012.t1;Parent=MS.gene049012
chr4.1 exon 3597788 3598678 3597788 ID=MS.gene049012.t1.exon1;Parent=MS.gene049012.t1
chr4.1 CDS 3597788 3598678 3597788 ID=cds.MS.gene049012.t1;Parent=MS.gene049012.t1
Gene Sequence

>MS.gene049012

ATGGATCGACCCGTTTTTGTTATCGAAGCCACCGAAGCCAAATCCATGGCCAAATCTTCATCCCTCACTCTCACCCAACTCCTCCCATCACTTGTCACCTCCGCCCAATCCCTCGCCCGACCACCCATCTCCAATTTCCACGTCGGAGCTGTCGGATTATCCCCATCGGGTCGGATCTTAATCGGAGTCAATGTCGAATTCCCAGGCCTCCCTCTTCATCACTCCATCCACGCCGAACAGTTTCTCCTCACAAATCTCTCCCTCCACGACGAACCCAATCTCCACTCATTTGCCGTCTCCGCCGCTCCCTGTGGCCACTGCCGGCAATTCTTCCAAGAAATCCGCGGAGCACCCGATATTCAAATCATCATTACCTCCGAATCTGACCCAAATTTCACTTCTCTGTCTCATTTTCTTCCTTACAGATTTGGACCACACGATCTTCTCCCTCAACACGCTCCTCTGTTTTTGGAACCACGCACCAACGGGTTAAAGCTTCTTCCGTTAACAACAGAGAAACTATCCAATGGCGTTTGCAACGGTGATTCGCTTCATGAGAAGCTAAAGATTGCGGCTATGGAGGCTGCGAATAAATCGCATGCTCCTTATAGTAATTCACCATCTGGGATGGCGATTGTGGATTGTAATGGAAAAATCTATAAAGGATCTTATGTTGAATCGGCGGCGTTTAATCCTAGTTTGGGTCCACTTCAGGCTGCGGTGGTGGCGTTTATTGTCGCCGGCGGCGGTAAGTATGATGAGATCGTGGGTGCTGTGTTGGTGGAGAAAGACGGAGCTATGGTGAAACAAGAGGGCACTGTTAAATTGTTGCTTGAAACTATTTCTCCTAAATGTCAATTGCAGACTTTACTCTGTTCCTTTGATGAATGA
Protein sequence

>MS.gene049012.t1

MDRPVFVIEATEAKSMAKSSSLTLTQLLPSLVTSAQSLARPPISNFHVGAVGLSPSGRILIGVNVEFPGLPLHHSIHAEQFLLTNLSLHDEPNLHSFAVSAAPCGHCRQFFQEIRGAPDIQIIITSESDPNFTSLSHFLPYRFGPHDLLPQHAPLFLEPRTNGLKLLPLTTEKLSNGVCNGDSLHEKLKIAAMEAANKSHAPYSNSPSGMAIVDCNGKIYKGSYVESAAFNPSLGPLQAAVVAFIVAGGGKYDEIVGAVLVEKDGAMVKQEGTVKLLLETISPKCQLQTLLCSFDE