Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20200.t1 | KEH21288.1 | 95.2 | 580 | 24 | 2 | 1 | 576 | 1 | 580 | 0.00E+00 | 1132.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20200.t1 | Q9SU50 | 58.6 | 553 | 224 | 4 | 27 | 575 | 74 | 625 | 3.7e-193 | 676.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20200.t1 | A0A072TWM8 | 95.2 | 580 | 24 | 2 | 1 | 576 | 1 | 580 | 0.0e+00 | 1132.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06119 | MS.gene20200 | 0.974147 | 1.20E-137 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66304 | MS.gene20200 | PPI |
| MS.gene20200 | MS.gene049012 | PPI |
| MS.gene20170 | MS.gene20200 | PPI |
| MS.gene20200 | MS.gene030278 | PPI |
| MS.gene06185 | MS.gene20200 | PPI |
| MS.gene20200 | MS.gene55873 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20200.t1 | MTR_8g099985 | 94.655 | 580 | 27 | 1 | 1 | 576 | 1 | 580 | 0.0 | 1123 |
| MS.gene20200.t1 | MTR_8g099985 | 97.283 | 552 | 15 | 0 | 25 | 576 | 2 | 553 | 0.0 | 1117 |
| MS.gene20200.t1 | MTR_8g099985 | 94.483 | 580 | 27 | 2 | 1 | 576 | 1 | 579 | 0.0 | 1116 |
| MS.gene20200.t1 | MTR_8g099985 | 97.101 | 552 | 15 | 1 | 25 | 576 | 2 | 552 | 0.0 | 1111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20200.t1 | AT4G24040 | 57.645 | 569 | 233 | 5 | 15 | 576 | 59 | 626 | 0.0 | 655 |
Find 142 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAATCATAGCGCTTAAA+AGG | 0.150099 | 4.4:+4398900 | None:intergenic |
| GGGATTCCTACTGGGTAATT+AGG | 0.188185 | 4.4:-4400032 | MS.gene20200:intron |
| GTGGAACATTGCGGAGAATT+TGG | 0.215201 | 4.4:-4396576 | MS.gene20200:CDS |
| CATACTCTGCTTCCTGTTCC+TGG | 0.232512 | 4.4:-4400099 | MS.gene20200:CDS |
| CCTTGCATAATAGCGATTTA+AGG | 0.232755 | 4.4:+4398625 | None:intergenic |
| GCAACTTCTTTGAGTGATTC+AGG | 0.233453 | 4.4:-4396913 | MS.gene20200:CDS |
| GCCTTCTTTGCAAATGTTAC+TGG | 0.243160 | 4.4:-4398020 | MS.gene20200:CDS |
| CGATTAAGGTTCATTCTCTT+TGG | 0.245075 | 4.4:-4400173 | MS.gene20200:CDS |
| CTGGCATTCTTGGAGGAGTT+TGG | 0.263221 | 4.4:-4396283 | MS.gene20200:CDS |
| GGAAGCAGAGTATGGTAGTT+AGG | 0.277116 | 4.4:+4400108 | None:intergenic |
| TCGAGGATTTAGGAAGATTC+TGG | 0.291598 | 4.4:+4400349 | None:intergenic |
| CACACCATTGTGGACGATTC+TGG | 0.297697 | 4.4:+4398587 | None:intergenic |
| TGGCATTCTTGGAGGAGTTT+GGG | 0.304022 | 4.4:-4396282 | MS.gene20200:CDS |
| ATTGGTTGTGATCCATCTTA+TGG | 0.308508 | 4.4:+4396644 | None:intergenic |
| ACTGAACCAGTCGAGGATTT+AGG | 0.309319 | 4.4:+4400339 | None:intergenic |
| TGGAGTTGTGCTGGCATTCT+TGG | 0.309506 | 4.4:-4396293 | MS.gene20200:CDS |
| TTCTAACATCGGAAATTTGC+AGG | 0.312438 | 4.4:+4397973 | None:intergenic |
| ATTGCAATGCAGACTGGTTT+TGG | 0.312604 | 4.4:-4396325 | MS.gene20200:intron |
| ATTGTGGACGATTCTGGCCT+TGG | 0.323742 | 4.4:+4398593 | None:intergenic |
| CATCCACAAAGGAACAAAAT+TGG | 0.326919 | 4.4:+4397738 | None:intergenic |
| CTTCCAGAAGGTTCAAGTTT+GGG | 0.328084 | 4.4:-4397794 | MS.gene20200:intron |
| TACTGAAAGAGCACGAGTTT+TGG | 0.328407 | 4.4:-4398823 | MS.gene20200:CDS |
| ACTTCCAGAAGGTTCAAGTT+TGG | 0.328806 | 4.4:-4397795 | MS.gene20200:intron |
| TCATGAATACCTGAGTAAAA+TGG | 0.329622 | 4.4:+4397712 | None:intergenic |
| TCTGGCCTGCTTCGTGCTGC+TGG | 0.332816 | 4.4:-4396940 | MS.gene20200:CDS |
| GGTCAGAGCATGGGCGATTA+AGG | 0.337495 | 4.4:-4400187 | MS.gene20200:CDS |
| TGAACCAATGGCTTGATTCC+TGG | 0.337512 | 4.4:-4397914 | MS.gene20200:CDS |
| GAATACGGGTTTGTGCTTAA+TGG | 0.346920 | 4.4:-4399747 | MS.gene20200:CDS |
| GTTGAAGGCCTTGTAAAATC+AGG | 0.348652 | 4.4:-4396702 | MS.gene20200:CDS |
| GTGATATAGAATTAGTTAAA+AGG | 0.354626 | 4.4:-4398859 | MS.gene20200:CDS |
| CAAATGTTACTGGAGATAAT+AGG | 0.358114 | 4.4:-4398010 | MS.gene20200:CDS |
| GATTTAAATGCATTTCTACT+TGG | 0.364005 | 4.4:-4398146 | MS.gene20200:CDS |
| CTAGCATCAGCTGCTGAATC+AGG | 0.368826 | 4.4:-4398431 | MS.gene20200:CDS |
| AGGCATCTGCTTCCAAGTTC+AGG | 0.372013 | 4.4:-4398487 | MS.gene20200:CDS |
| ATCGCCCATGCTCTGACCTC+AGG | 0.375305 | 4.4:+4400192 | None:intergenic |
| CCTGGTTCTGTTGTTATCCC+TGG | 0.380817 | 4.4:-4400081 | MS.gene20200:CDS |
| CAATCTCATTTCATTGATTG+AGG | 0.383699 | 4.4:-4399769 | MS.gene20200:CDS |
| AGAAATGCATTTAAATCAAC+AGG | 0.395594 | 4.4:+4398152 | None:intergenic |
| ATTTCATTGATTGAGGAATA+CGG | 0.395655 | 4.4:-4399762 | MS.gene20200:CDS |
| TCCAGTAACATTTGCAAAGA+AGG | 0.405233 | 4.4:+4398019 | None:intergenic |
| CAGGAACAGGAAGCAGAGTA+TGG | 0.406552 | 4.4:+4400100 | None:intergenic |
| GTAGACAATGTTGTGAAGTT+AGG | 0.407549 | 4.4:+4398188 | None:intergenic |
| TACAGTGACAGCATCAACTA+TGG | 0.410643 | 4.4:-4400523 | MS.gene20200:CDS |
| ATTTAAATGCATTTCTACTT+GGG | 0.415801 | 4.4:-4398145 | MS.gene20200:CDS |
| TATATTACTGGGATTCCTAC+TGG | 0.417297 | 4.4:-4400041 | MS.gene20200:CDS |
| AGCGTGATCCGTATCGGAAA+GGG | 0.420355 | 4.4:+4400374 | None:intergenic |
| GATTTCGTGAAGTATATTAC+TGG | 0.429451 | 4.4:-4400053 | MS.gene20200:CDS |
| GCAAATTTCCGATGTTAGAA+AGG | 0.431097 | 4.4:-4397970 | MS.gene20200:CDS |
| CTAGAGCATACTACACTAAC+AGG | 0.433578 | 4.4:-4399722 | MS.gene20200:CDS |
| CTCAATCAATGAAATGAGAT+TGG | 0.439063 | 4.4:+4399770 | None:intergenic |
| GAAGTGGAGCCCAACCATTC+GGG | 0.440275 | 4.4:+4396736 | None:intergenic |
| CTTCAACACATGTTAGTTGA+AGG | 0.440568 | 4.4:-4396717 | MS.gene20200:CDS |
| TGAAGTGGAGCCCAACCATT+CGG | 0.445190 | 4.4:+4396735 | None:intergenic |
| ATAAATCATAGCGCTTAAAA+GGG | 0.448110 | 4.4:+4398901 | None:intergenic |
| TTCTGAAACAGTCCTGAACT+TGG | 0.449107 | 4.4:+4398475 | None:intergenic |
| GAAGCAGAGTATGGTAGTTA+GGG | 0.453589 | 4.4:+4400109 | None:intergenic |
| TATACATAAAGTGAACATTT+CGG | 0.459139 | 4.4:-4398669 | MS.gene20200:CDS |
| GGCTCAGGGACAAAATCCTC+TGG | 0.464693 | 4.4:+4400243 | None:intergenic |
| ACTTCACGAAATCGCGAACC+AGG | 0.465854 | 4.4:+4400063 | None:intergenic |
| AAGGATACGAGTGGAGTTGA+AGG | 0.466489 | 4.4:+4400486 | None:intergenic |
| CTCGAAAGTCTCAAAACCTC+TGG | 0.471532 | 4.4:-4396958 | MS.gene20200:CDS |
| CTGAAGAAATTGCCATAAGA+TGG | 0.477213 | 4.4:-4396656 | MS.gene20200:CDS |
| TTTCATTGATTGAGGAATAC+GGG | 0.491455 | 4.4:-4399761 | MS.gene20200:CDS |
| TAGGGACTTCCCGAATGGTT+GGG | 0.494523 | 4.4:-4396745 | MS.gene20200:CDS |
| ATAACAACAGAACCAGGAAC+AGG | 0.502133 | 4.4:+4400087 | None:intergenic |
| CTGGAAAGCGTGATCCGTAT+CGG | 0.508838 | 4.4:+4400368 | None:intergenic |
| CTGGTCAAATGGAGTTGTGC+TGG | 0.514815 | 4.4:-4396302 | MS.gene20200:CDS |
| CATTCTTGGAGGAGTTTGGG+TGG | 0.515798 | 4.4:-4396279 | MS.gene20200:CDS |
| TGCGGAGAATTTGGAGGTGG+GGG | 0.515962 | 4.4:-4396567 | MS.gene20200:CDS |
| TTGAAGGCCTTGTAAAATCA+GGG | 0.517177 | 4.4:-4396701 | MS.gene20200:CDS |
| TCGTGCTCTTTCAGTAGTGC+AGG | 0.522605 | 4.4:+4398830 | None:intergenic |
| CAGCAGCTGATGCTAGTTCA+CGG | 0.526218 | 4.4:+4398438 | None:intergenic |
| CAACTCCAGCAGCACGAAGC+AGG | 0.532599 | 4.4:+4396935 | None:intergenic |
| GACAATGTTGTGAAGTTAGG+AGG | 0.536747 | 4.4:+4398191 | None:intergenic |
| CACACCGCATTCAACACATT+CGG | 0.536936 | 4.4:-4400447 | MS.gene20200:CDS |
| ATAGGGACTTCCCGAATGGT+TGG | 0.537673 | 4.4:-4396746 | MS.gene20200:intron |
| AATTGCCTCCTTTCTAACAT+CGG | 0.541772 | 4.4:+4397962 | None:intergenic |
| TTTAAATGCATTTCTACTTG+GGG | 0.544167 | 4.4:-4398144 | MS.gene20200:intron |
| AGCAGCACGAAGCAGGCCAG+AGG | 0.544937 | 4.4:+4396942 | None:intergenic |
| TCAACTAACATGTGTTGAAG+TGG | 0.545752 | 4.4:+4396720 | None:intergenic |
| CATCAGCTGCTGAATCAGGA+TGG | 0.547532 | 4.4:-4398427 | MS.gene20200:CDS |
| ATTTCGTGAAGTATATTACT+GGG | 0.547731 | 4.4:-4400052 | MS.gene20200:CDS |
| CATTGCGGAGAATTTGGAGG+TGG | 0.549996 | 4.4:-4396570 | MS.gene20200:CDS |
| AGGCCTTGTAAAATCAGGGT+TGG | 0.550849 | 4.4:-4396697 | MS.gene20200:CDS |
| TAGCGCTTAAAAGGGGAGGC+TGG | 0.552660 | 4.4:+4398909 | None:intergenic |
| TAGAAAGGAGGCAATTAACT+CGG | 0.554148 | 4.4:-4397955 | MS.gene20200:CDS |
| TCGCCCATGCTCTGACCTCA+GGG | 0.556142 | 4.4:+4400193 | None:intergenic |
| ACAATGTTGTGAAGTTAGGA+GGG | 0.558386 | 4.4:+4398192 | None:intergenic |
| AGTTGTGCTGGCATTCTTGG+AGG | 0.560594 | 4.4:-4396290 | MS.gene20200:CDS |
| GTGTTGGAGAATTTCGAGAA+AGG | 0.563419 | 4.4:+4400467 | None:intergenic |
| CCAGGGATAACAACAGAACC+AGG | 0.567138 | 4.4:+4400081 | None:intergenic |
| GTGAACATTTCGGATGCTCA+AGG | 0.569724 | 4.4:-4398659 | MS.gene20200:CDS |
| GAACATTGCGGAGAATTTGG+AGG | 0.573813 | 4.4:-4396573 | MS.gene20200:CDS |
| GATGGGATTTCAGCACAAGA+TGG | 0.574741 | 4.4:-4398409 | MS.gene20200:CDS |
| TGAGCCAGGAATCAAGCCAT+TGG | 0.576256 | 4.4:+4397910 | None:intergenic |
| ATGTGTGGTATTGCTGAGCC+AGG | 0.578031 | 4.4:+4397896 | None:intergenic |
| ATATTACTGGGATTCCTACT+GGG | 0.578376 | 4.4:-4400040 | MS.gene20200:CDS |
| ACGCTAAGCAGCAATGGCCA+AGG | 0.586201 | 4.4:-4400583 | None:intergenic |
| AAGCGTGATCCGTATCGGAA+AGG | 0.588837 | 4.4:+4400373 | None:intergenic |
| GCGTGATCCGTATCGGAAAG+GGG | 0.591271 | 4.4:+4400375 | None:intergenic |
| ATCAGCTGCTGAATCAGGAT+GGG | 0.594438 | 4.4:-4398426 | MS.gene20200:CDS |
| AAACCCTGAGGTCAGAGCAT+GGG | 0.598300 | 4.4:-4400196 | MS.gene20200:CDS |
| AATCTTCCTAAATCCTCGAC+TGG | 0.599150 | 4.4:-4400345 | MS.gene20200:CDS |
| CCTTAAATCGCTATTATGCA+AGG | 0.603776 | 4.4:-4398625 | MS.gene20200:CDS |
| AAAACCCTGAGGTCAGAGCA+TGG | 0.605362 | 4.4:-4400197 | MS.gene20200:CDS |
| AACGGACACTGAACCAGTCG+AGG | 0.607852 | 4.4:+4400332 | None:intergenic |
| ATTGCGGAGAATTTGGAGGT+GGG | 0.609969 | 4.4:-4396569 | MS.gene20200:CDS |
| TATGAGATATACGCTAGGAC+TGG | 0.610537 | 4.4:-4398881 | MS.gene20200:CDS |
| GGAATGCAAACATGAACCAA+TGG | 0.611077 | 4.4:-4397926 | MS.gene20200:CDS |
| GTTGGAAGAAGCAAGGTCGT+TGG | 0.612218 | 4.4:-4396679 | MS.gene20200:CDS |
| TGTAATAGGGACTTCCCGAA+TGG | 0.614073 | 4.4:-4396750 | MS.gene20200:intron |
| AAAACGATTCAAATCATGAA+CGG | 0.617469 | 4.4:+4400314 | None:intergenic |
| ATCATAGCGCTTAAAAGGGG+AGG | 0.618174 | 4.4:+4398905 | None:intergenic |
| AATTTCCGATGTTAGAAAGG+AGG | 0.620169 | 4.4:-4397967 | MS.gene20200:CDS |
| TTGCGGAGAATTTGGAGGTG+GGG | 0.625168 | 4.4:-4396568 | MS.gene20200:CDS |
| ATGTGTTGAATGCGGTGTGT+TGG | 0.625546 | 4.4:+4400451 | None:intergenic |
| ATTTCAGCACAAGATGGATG+AGG | 0.627854 | 4.4:-4398403 | MS.gene20200:intron |
| TTTGAGAGGTAAATCGACGT+AGG | 0.628012 | 4.4:+4400401 | None:intergenic |
| ATGCAAGGTGGGACAAACCA+AGG | 0.631432 | 4.4:-4398610 | MS.gene20200:CDS |
| TGATTTATGAGATATACGCT+AGG | 0.633128 | 4.4:-4398886 | MS.gene20200:CDS |
| ATTTCGAGAAAGGATACGAG+TGG | 0.636358 | 4.4:+4400477 | None:intergenic |
| ACATACCACACACACCATTG+TGG | 0.636727 | 4.4:+4398577 | None:intergenic |
| AAATCGCTATTATGCAAGGT+GGG | 0.639450 | 4.4:-4398621 | MS.gene20200:CDS |
| CTTCACGAAATCGCGAACCA+GGG | 0.640218 | 4.4:+4400064 | None:intergenic |
| TAAATCGCTATTATGCAAGG+TGG | 0.642260 | 4.4:-4398622 | MS.gene20200:CDS |
| TAAATCATAGCGCTTAAAAG+GGG | 0.643981 | 4.4:+4398902 | None:intergenic |
| AAGTTTGACGTGGAACATTG+CGG | 0.648225 | 4.4:-4396585 | MS.gene20200:CDS |
| TAAAATGGCTTCATCCACAA+AGG | 0.649607 | 4.4:+4397727 | None:intergenic |
| AACAAACCTAATTACCCAGT+AGG | 0.651976 | 4.4:+4400026 | None:intergenic |
| TGAGTGATTCAGGACAGCAG+TGG | 0.659605 | 4.4:-4396903 | MS.gene20200:intron |
| AGTTGATGCTGTCACTGTAA+CGG | 0.661317 | 4.4:+4400527 | None:intergenic |
| AATCAGGGTTGGAAGAAGCA+AGG | 0.661754 | 4.4:-4396686 | MS.gene20200:CDS |
| ACTTGAAAATACCTCATGTG+TGG | 0.670842 | 4.4:+4397881 | None:intergenic |
| CGTGATCCGTATCGGAAAGG+GGG | 0.673238 | 4.4:+4400376 | None:intergenic |
| TCTCGTGTACTCTGATCCAG+AGG | 0.686829 | 4.4:-4400259 | MS.gene20200:CDS |
| AAGGCCAGAATCGTCCACAA+TGG | 0.691379 | 4.4:-4398591 | MS.gene20200:intron |
| GCTCAGCAATACCACACATG+AGG | 0.698303 | 4.4:-4397892 | MS.gene20200:intron |
| GAGCATACTACACTAACAGG+AGG | 0.711397 | 4.4:-4399719 | MS.gene20200:intron |
| AATGCATGAAAAGTTTGACG+TGG | 0.715752 | 4.4:-4396595 | MS.gene20200:CDS |
| AGGGTGAGTCTTGACCTCAG+TGG | 0.753249 | 4.4:+4400128 | None:intergenic |
| ATTGCCGAATGTGTTGAATG+CGG | 0.761724 | 4.4:+4400443 | None:intergenic |
| GAGTAGGAAAGTATCCACTG+AGG | 0.796738 | 4.4:-4400142 | MS.gene20200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAACAAATTCAAAA+AGG | + | chr4.4:4397574-4397593 | None:intergenic | 15.0% |
| !! | AATATTTAATGTTCAACTTT+GGG | - | chr4.4:4398292-4398311 | MS.gene20200:intron | 15.0% |
| !! | AGATATATTGAAAATATACT+AGG | + | chr4.4:4400406-4400425 | None:intergenic | 15.0% |
| !! | ATATTATTTCATTTATACCT+CGG | + | chr4.4:4398277-4398296 | None:intergenic | 15.0% |
| !! | TAATATTTAATGTTCAACTT+TGG | - | chr4.4:4398291-4398310 | MS.gene20200:intron | 15.0% |
| !!! | GTCATTTATTGATTTATAAT+AGG | - | chr4.4:4399584-4399603 | MS.gene20200:intron | 15.0% |
| !!! | TTTATAGAAACTTATTTTGA+TGG | - | chr4.4:4396528-4396547 | MS.gene20200:intron | 15.0% |
| !!! | TTTATTGATTTATAATAGGA+AGG | - | chr4.4:4399588-4399607 | MS.gene20200:intron | 15.0% |
| !!! | TTTTTTGTAAACGATATAAT+TGG | + | chr4.4:4400199-4400218 | None:intergenic | 15.0% |
| !! | AAAAAAAATAAGTGCAGAAA+AGG | + | chr4.4:4397680-4397699 | None:intergenic | 20.0% |
| !! | AGTATTCAACTTTAAACATT+TGG | - | chr4.4:4399355-4399374 | MS.gene20200:intron | 20.0% |
| !! | ATAGAATGCTAAATAATTTG+AGG | - | chr4.4:4399378-4399397 | MS.gene20200:intron | 20.0% |
| !! | ATATTAAGCATATAGACTTA+AGG | + | chr4.4:4399430-4399449 | None:intergenic | 20.0% |
| !! | ATCAGTTAAAATTAAAATGC+TGG | + | chr4.4:4397178-4397197 | None:intergenic | 20.0% |
| !! | ATTTAAATGCATTTCTACTT+GGG | - | chr4.4:4398677-4398696 | MS.gene20200:intron | 20.0% |
| !! | ATTTAGATGACTCATATATA+AGG | + | chr4.4:4398450-4398469 | None:intergenic | 20.0% |
| !! | GATATGTTAAAAAGAATTTC+AGG | - | chr4.4:4399778-4399797 | MS.gene20200:CDS | 20.0% |
| !! | GTGATATAGAATTAGTTAAA+AGG | - | chr4.4:4397963-4397982 | MS.gene20200:CDS | 20.0% |
| !! | TAAAATGTATGAAAAATCCT+TGG | + | chr4.4:4396259-4396278 | None:intergenic | 20.0% |
| !! | TATACATAAAGTGAACATTT+CGG | - | chr4.4:4398153-4398172 | MS.gene20200:CDS | 20.0% |
| !! | TATATCGTTTACAAAAAAAC+AGG | - | chr4.4:4400201-4400220 | MS.gene20200:CDS | 20.0% |
| !! | TCAGTTAAAATTAAAATGCT+GGG | + | chr4.4:4397177-4397196 | None:intergenic | 20.0% |
| !!! | AACTTTTTTCTACATATGTA+GGG | - | chr4.4:4399983-4400002 | MS.gene20200:intron | 20.0% |
| !!! | ATAATTAGTTTGATTGCAAA+AGG | + | chr4.4:4397815-4397834 | None:intergenic | 20.0% |
| !!! | ATCATTTCTGTTTTTATCTT+TGG | - | chr4.4:4396975-4396994 | MS.gene20200:CDS | 20.0% |
| !!! | TACTTTATCATTGTGATTTT+TGG | - | chr4.4:4400317-4400336 | MS.gene20200:CDS | 20.0% |
| !!! | TTCTGTTATTTGAACAAATA+AGG | - | chr4.4:4396841-4396860 | MS.gene20200:intron | 20.0% |
| ! | AAAACGATTCAAATCATGAA+CGG | + | chr4.4:4396511-4396530 | None:intergenic | 25.0% |
| ! | AAAGGTAAAACAATGAACAT+GGG | + | chr4.4:4398119-4398138 | None:intergenic | 25.0% |
| ! | AAATTACAGAAAGTAATAGC+AGG | + | chr4.4:4397132-4397151 | None:intergenic | 25.0% |
| ! | AAGATAAAGTCATTGTGTAA+AGG | + | chr4.4:4399751-4399770 | None:intergenic | 25.0% |
| ! | AATAAACTCACAAGTGATAT+AGG | + | chr4.4:4398052-4398071 | None:intergenic | 25.0% |
| ! | AATCAATAATAAGTCATGGA+TGG | + | chr4.4:4399317-4399336 | None:intergenic | 25.0% |
| ! | AATTACAGAAAGTAATAGCA+GGG | + | chr4.4:4397131-4397150 | None:intergenic | 25.0% |
| ! | ACAACCAATATTAGAAACTT+GGG | + | chr4.4:4396949-4396968 | None:intergenic | 25.0% |
| ! | ACTCATATGAAACTTGTAAT+AGG | - | chr4.4:4400058-4400077 | MS.gene20200:CDS | 25.0% |
| ! | ACTTGTATAAATCTACCATA+TGG | - | chr4.4:4398967-4398986 | MS.gene20200:intron | 25.0% |
| ! | ACTTGTGAGTTTATTATCTA+AGG | - | chr4.4:4398057-4398076 | MS.gene20200:intron | 25.0% |
| ! | AGAAATGCATTTAAATCAAC+AGG | + | chr4.4:4398673-4398692 | None:intergenic | 25.0% |
| ! | AGTTAAAATTAAAATGCTGG+GGG | + | chr4.4:4397175-4397194 | None:intergenic | 25.0% |
| ! | ATAAATCATAGCGCTTAAAA+GGG | + | chr4.4:4397924-4397943 | None:intergenic | 25.0% |
| ! | ATAGTTAACACAGTTCAAAT+AGG | + | chr4.4:4396912-4396931 | None:intergenic | 25.0% |
| ! | ATGCATATCTATGGAAAATT+AGG | - | chr4.4:4399252-4399271 | MS.gene20200:intron | 25.0% |
| ! | ATGTAATCGATATATGTTTG+TGG | + | chr4.4:4399715-4399734 | None:intergenic | 25.0% |
| ! | ATTTCGTGAAGTATATTACT+GGG | - | chr4.4:4396770-4396789 | MS.gene20200:intron | 25.0% |
| ! | CAGTTAAAATTAAAATGCTG+GGG | + | chr4.4:4397176-4397195 | None:intergenic | 25.0% |
| ! | CATCTAAATGTGTGTTTATT+AGG | - | chr4.4:4398461-4398480 | MS.gene20200:CDS | 25.0% |
| ! | CTCATATGAAACTTGTAATA+GGG | - | chr4.4:4400059-4400078 | MS.gene20200:CDS | 25.0% |
| ! | CTTGTATAAATCTACCATAT+GGG | - | chr4.4:4398968-4398987 | MS.gene20200:intron | 25.0% |
| ! | GATTTAAATGCATTTCTACT+TGG | - | chr4.4:4398676-4398695 | MS.gene20200:intron | 25.0% |
| ! | GTTATATGATCTCAAATCAA+AGG | + | chr4.4:4397421-4397440 | None:intergenic | 25.0% |
| ! | TAACTGTGTTAATAAACTTC+AGG | + | chr4.4:4399220-4399239 | None:intergenic | 25.0% |
| ! | TACAACCAATATTAGAAACT+TGG | + | chr4.4:4396950-4396969 | None:intergenic | 25.0% |
| ! | TATATCTATAAGACGATGAA+AGG | + | chr4.4:4398137-4398156 | None:intergenic | 25.0% |
| ! | TCACAATCAATAATAAGTCA+TGG | + | chr4.4:4399321-4399340 | None:intergenic | 25.0% |
| ! | TTGTATAAATCTACCATATG+GGG | - | chr4.4:4398969-4398988 | MS.gene20200:intron | 25.0% |
| ! | TTTAAATGCATTTCTACTTG+GGG | - | chr4.4:4398678-4398697 | MS.gene20200:intron | 25.0% |
| !! | ACGTGTATTCTTATTTCAAA+GGG | - | chr4.4:4400429-4400448 | MS.gene20200:CDS | 25.0% |
| !! | AGTAATAAGCAATTTGGAAT+TGG | - | chr4.4:4399944-4399963 | MS.gene20200:intron | 25.0% |
| !! | ATTTCATTGATTGAGGAATA+CGG | - | chr4.4:4397060-4397079 | MS.gene20200:intron | 25.0% |
| !! | GTAATTTTATCCATTGTCAT+TGG | - | chr4.4:4397145-4397164 | MS.gene20200:intron | 25.0% |
| !! | GTTCATGATTTTCTATTCAA+CGG | - | chr4.4:4399534-4399553 | MS.gene20200:intron | 25.0% |
| !! | TACGTGTATTCTTATTTCAA+AGG | - | chr4.4:4400428-4400447 | MS.gene20200:CDS | 25.0% |
| !! | TATACATGTTTTCTAGATGT+TGG | - | chr4.4:4399487-4399506 | MS.gene20200:intron | 25.0% |
| !! | TCAAAGGTGTAGATTATTTA+AGG | + | chr4.4:4397405-4397424 | None:intergenic | 25.0% |
| !! | TGTTTGAAAGTGCAAAAATT+AGG | + | chr4.4:4397858-4397877 | None:intergenic | 25.0% |
| !!! | AAGCAAATACATTTTGATTC+TGG | + | chr4.4:4399064-4399083 | None:intergenic | 25.0% |
| !!! | ACTATTTTGAGAGTTATTCA+CGG | + | chr4.4:4397492-4397511 | None:intergenic | 25.0% |
| !!! | GAACTTTTTTCTACATATGT+AGG | - | chr4.4:4399982-4400001 | MS.gene20200:intron | 25.0% |
| !!! | GTTTTTATCTTTGGTTTTCA+GGG | - | chr4.4:4396984-4397003 | MS.gene20200:CDS | 25.0% |
| !!! | TGTTTTTATCTTTGGTTTTC+AGG | - | chr4.4:4396983-4397002 | MS.gene20200:CDS | 25.0% |
| !!! | TTTTTATCTTTGGTTTTCAG+GGG | - | chr4.4:4396985-4397004 | MS.gene20200:intron | 25.0% |
| AACTGATACTAGAGTTAATG+TGG | + | chr4.4:4399144-4399163 | None:intergenic | 30.0% | |
| ACAAATCGATCTCAAATGAA+TGG | + | chr4.4:4397363-4397382 | None:intergenic | 30.0% | |
| AGAATAAGATACTGCTAATG+TGG | - | chr4.4:4397253-4397272 | MS.gene20200:intron | 30.0% | |
| CAAATGTTACTGGAGATAAT+AGG | - | chr4.4:4398812-4398831 | MS.gene20200:intron | 30.0% | |
| CAGAAACAAAAGAGTAAGAA+AGG | + | chr4.4:4396826-4396845 | None:intergenic | 30.0% | |
| CATAAATCATAGCGCTTAAA+AGG | + | chr4.4:4397925-4397944 | None:intergenic | 30.0% | |
| CTATGGAAAATTAGGAACTT+AGG | - | chr4.4:4399260-4399279 | MS.gene20200:intron | 30.0% | |
| CTCAATCAATGAAATGAGAT+TGG | + | chr4.4:4397055-4397074 | None:intergenic | 30.0% | |
| GAAAGGTAAAACAATGAACA+TGG | + | chr4.4:4398120-4398139 | None:intergenic | 30.0% | |
| GATCAAAGAATTTAATGAGC+AGG | + | chr4.4:4398754-4398773 | None:intergenic | 30.0% | |
| GATTTCGTGAAGTATATTAC+TGG | - | chr4.4:4396769-4396788 | MS.gene20200:intron | 30.0% | |
| GTGGTAAGTAATAAGCAATT+TGG | - | chr4.4:4399938-4399957 | MS.gene20200:intron | 30.0% | |
| TAAATCATAGCGCTTAAAAG+GGG | + | chr4.4:4397923-4397942 | None:intergenic | 30.0% | |
| TATCAGTTAAATTGAGTGCA+TGG | - | chr4.4:4399156-4399175 | MS.gene20200:intron | 30.0% | |
| TCATGAATACCTGAGTAAAA+TGG | + | chr4.4:4399113-4399132 | None:intergenic | 30.0% | |
| TGATTTATGAGATATACGCT+AGG | - | chr4.4:4397936-4397955 | MS.gene20200:CDS | 30.0% | |
| TTTCTGTTAAATGCACATGA+AGG | - | chr4.4:4399613-4399632 | MS.gene20200:intron | 30.0% | |
| ! | AATAAGCAATTTGGAATTGG+TGG | - | chr4.4:4399947-4399966 | MS.gene20200:intron | 30.0% |
| ! | ATTTGTTAACACAGAGAATC+TGG | + | chr4.4:4397309-4397328 | None:intergenic | 30.0% |
| ! | CAATCTCATTTCATTGATTG+AGG | - | chr4.4:4397053-4397072 | MS.gene20200:intron | 30.0% |
| ! | CATTCTATTTTACGATCTTC+GGG | + | chr4.4:4400569-4400588 | None:intergenic | 30.0% |
| ! | GCATTCTATTTTACGATCTT+CGG | + | chr4.4:4400570-4400589 | None:intergenic | 30.0% |
| ! | TTATTGATTGTGATCGTCTT+CGG | - | chr4.4:4399328-4399347 | MS.gene20200:intron | 30.0% |
| ! | TTTCATTGATTGAGGAATAC+GGG | - | chr4.4:4397061-4397080 | MS.gene20200:intron | 30.0% |
| ! | TTTGAGTACCTTTTATAGCT+AGG | - | chr4.4:4397610-4397629 | MS.gene20200:intron | 30.0% |
| !! | GGTTGCAGAATACTTATTTT+AGG | + | chr4.4:4398733-4398752 | None:intergenic | 30.0% |
| !! | TTGATCATCATTGATTCAGA+TGG | - | chr4.4:4398768-4398787 | MS.gene20200:intron | 30.0% |
| !!! | TTTTATCTTTGGTTTTCAGG+GGG | - | chr4.4:4396986-4397005 | MS.gene20200:intron | 30.0% |
| AAATCGCTATTATGCAAGGT+GGG | - | chr4.4:4398201-4398220 | MS.gene20200:intron | 35.0% | |
| AACAAACCTAATTACCCAGT+AGG | + | chr4.4:4396799-4396818 | None:intergenic | 35.0% | |
| AATGCATGAAAAGTTTGACG+TGG | - | chr4.4:4400227-4400246 | MS.gene20200:CDS | 35.0% | |
| AATTGCCTCCTTTCTAACAT+CGG | + | chr4.4:4398863-4398882 | None:intergenic | 35.0% | |
| AATTTCCGATGTTAGAAAGG+AGG | - | chr4.4:4398855-4398874 | MS.gene20200:CDS | 35.0% | |
| ACAATGTTGTGAAGTTAGGA+GGG | + | chr4.4:4398633-4398652 | None:intergenic | 35.0% | |
| ACACCAATCCTAGCTATAAA+AGG | + | chr4.4:4397621-4397640 | None:intergenic | 35.0% | |
| ACTTGAAAATACCTCATGTG+TGG | + | chr4.4:4398944-4398963 | None:intergenic | 35.0% | |
| ATACACAAAAGTCACATCCT+AGG | + | chr4.4:4400364-4400383 | None:intergenic | 35.0% | |
| ATAGTCACAATGTCATACCT+GGG | + | chr4.4:4400292-4400311 | None:intergenic | 35.0% | |
| ATATTACTGGGATTCCTACT+GGG | - | chr4.4:4396782-4396801 | MS.gene20200:intron | 35.0% | |
| ATTGGTTGTGATCCATCTTA+TGG | + | chr4.4:4400181-4400200 | None:intergenic | 35.0% | |
| CAAGTGCCAAAATTAATCAC+AGG | + | chr4.4:4396873-4396892 | None:intergenic | 35.0% | |
| CATCCACAAAGGAACAAAAT+TGG | + | chr4.4:4399087-4399106 | None:intergenic | 35.0% | |
| CCTTAAATCGCTATTATGCA+AGG | - | chr4.4:4398197-4398216 | MS.gene20200:CDS | 35.0% | |
| CCTTGCATAATAGCGATTTA+AGG | + | chr4.4:4398200-4398219 | None:intergenic | 35.0% | |
| CGATTAAGGTTCATTCTCTT+TGG | - | chr4.4:4396649-4396668 | MS.gene20200:CDS | 35.0% | |
| CTGAAGAAATTGCCATAAGA+TGG | - | chr4.4:4400166-4400185 | MS.gene20200:CDS | 35.0% | |
| CTTCAACACATGTTAGTTGA+AGG | - | chr4.4:4400105-4400124 | MS.gene20200:CDS | 35.0% | |
| CTTGAATATACACACCTCTT+AGG | - | chr4.4:4398090-4398109 | MS.gene20200:intron | 35.0% | |
| GATATGATCACGGTAAAACA+AGG | + | chr4.4:4397778-4397797 | None:intergenic | 35.0% | |
| GCAAATTTCCGATGTTAGAA+AGG | - | chr4.4:4398852-4398871 | MS.gene20200:CDS | 35.0% | |
| GTAGACAATGTTGTGAAGTT+AGG | + | chr4.4:4398637-4398656 | None:intergenic | 35.0% | |
| GTGCAGTATAGATATGATCA+CGG | + | chr4.4:4397788-4397807 | None:intergenic | 35.0% | |
| TAAAATGGCTTCATCCACAA+AGG | + | chr4.4:4399098-4399117 | None:intergenic | 35.0% | |
| TAAATCGCTATTATGCAAGG+TGG | - | chr4.4:4398200-4398219 | MS.gene20200:intron | 35.0% | |
| TACAATCAGTCAGATTCATG+TGG | + | chr4.4:4400478-4400497 | None:intergenic | 35.0% | |
| TAGAAAGGAGGCAATTAACT+CGG | - | chr4.4:4398867-4398886 | MS.gene20200:CDS | 35.0% | |
| TAGATATGCATGCACATTCA+AGG | + | chr4.4:4399243-4399262 | None:intergenic | 35.0% | |
| TATATTACTGGGATTCCTAC+TGG | - | chr4.4:4396781-4396800 | MS.gene20200:intron | 35.0% | |
| TCAACTAACATGTGTTGAAG+TGG | + | chr4.4:4400105-4400124 | None:intergenic | 35.0% | |
| TCCAGTAACATTTGCAAAGA+AGG | + | chr4.4:4398806-4398825 | None:intergenic | 35.0% | |
| TGAAAAAGACAGTTAGCAGA+AGG | + | chr4.4:4399006-4399025 | None:intergenic | 35.0% | |
| TGAATGTGCATGCATATCTA+TGG | - | chr4.4:4399243-4399262 | MS.gene20200:intron | 35.0% | |
| TTCTAACATCGGAAATTTGC+AGG | + | chr4.4:4398852-4398871 | None:intergenic | 35.0% | |
| TTGAGAGTTATTCACGGATT+TGG | + | chr4.4:4397486-4397505 | None:intergenic | 35.0% | |
| ! | AGTGATATAGGCACACATTT+TGG | + | chr4.4:4398040-4398059 | None:intergenic | 35.0% |
| ! | CAGTTAGACTAGTCATTTGA+TGG | + | chr4.4:4397533-4397552 | None:intergenic | 35.0% |
| ! | CTCTTTGGAAAAACTTGAGT+AGG | - | chr4.4:4396664-4396683 | MS.gene20200:CDS | 35.0% |
| ! | CTTCCAATTTTGTTCCTTTG+TGG | - | chr4.4:4399081-4399100 | MS.gene20200:intron | 35.0% |
| ! | GTACCTTTTATAGCTAGGAT+TGG | - | chr4.4:4397615-4397634 | MS.gene20200:intron | 35.0% |
| ! | TCCATGCCTGTGATTAATTT+TGG | - | chr4.4:4396864-4396883 | MS.gene20200:intron | 35.0% |
| ! | TGACTTTTGTGTATGATGAC+TGG | - | chr4.4:4400370-4400389 | MS.gene20200:CDS | 35.0% |
| ! | TTAGGTCATCTTTTACTCCA+TGG | + | chr4.4:4398715-4398734 | None:intergenic | 35.0% |
| ! | TTGAAGGCCTTGTAAAATCA+GGG | - | chr4.4:4400121-4400140 | MS.gene20200:CDS | 35.0% |
| !! | GTCTTTTTCATACTTCCAGA+AGG | - | chr4.4:4399016-4399035 | MS.gene20200:intron | 35.0% |
| !!! | ACCTCAGGGTTTTTTACTTT+AGG | + | chr4.4:4396618-4396637 | None:intergenic | 35.0% |
| !!! | ATACATTTTGATTCTGGTGC+AGG | + | chr4.4:4399058-4399077 | None:intergenic | 35.0% |
| !!! | ATCATTGTGATTTTTGGTCC+AGG | - | chr4.4:4400323-4400342 | MS.gene20200:CDS | 35.0% |
| !!! | GAAACTTATTTTGATGGTGC+AGG | - | chr4.4:4396534-4396553 | MS.gene20200:intron | 35.0% |
| !!! | TACATTTTGATTCTGGTGCA+GGG | + | chr4.4:4399057-4399076 | None:intergenic | 35.0% |
| !!! | TCATTGTGATTTTTGGTCCA+GGG | - | chr4.4:4400324-4400343 | MS.gene20200:CDS | 35.0% |
| AATCTTCCTAAATCCTCGAC+TGG | - | chr4.4:4396477-4396496 | MS.gene20200:intron | 40.0% | |
| AATGTGGAATCAATGTGCTG+TGG | - | chr4.4:4397269-4397288 | MS.gene20200:intron | 40.0% | |
| ACATATGTAGGGAGCAGAAA+AGG | - | chr4.4:4399994-4400013 | MS.gene20200:intron | 40.0% | |
| ACCAATCAACAGCGTAATCT+AGG | + | chr4.4:4399468-4399487 | None:intergenic | 40.0% | |
| ACTTTAGGCAAAAAACCCTC+AGG | + | chr4.4:4396603-4396622 | None:intergenic | 40.0% | |
| AGGTTTCTCAAATGTTTCCC+TGG | + | chr4.4:4400344-4400363 | None:intergenic | 40.0% | |
| ATAACAACAGAACCAGGAAC+AGG | + | chr4.4:4396738-4396757 | None:intergenic | 40.0% | |
| ATCAACAGCGTAATCTAGGA+CGG | + | chr4.4:4399464-4399483 | None:intergenic | 40.0% | |
| ATCAGTCAGATTCATGTGGA+AGG | + | chr4.4:4400474-4400493 | None:intergenic | 40.0% | |
| ATGTGCTGTGGTGTGAAATA+CGG | - | chr4.4:4397281-4397300 | MS.gene20200:intron | 40.0% | |
| ATTGCCGAATGTGTTGAATG+CGG | + | chr4.4:4396382-4396401 | None:intergenic | 40.0% | |
| ATTTCAGCACAAGATGGATG+AGG | - | chr4.4:4398419-4398438 | MS.gene20200:CDS | 40.0% | |
| ATTTCGAGAAAGGATACGAG+TGG | + | chr4.4:4396348-4396367 | None:intergenic | 40.0% | |
| CAGGTATGACATTGTGACTA+TGG | - | chr4.4:4400291-4400310 | MS.gene20200:CDS | 40.0% | |
| CATAGTCACAATGTCATACC+TGG | + | chr4.4:4400293-4400312 | None:intergenic | 40.0% | |
| CTAGAGCATACTACACTAAC+AGG | - | chr4.4:4397100-4397119 | MS.gene20200:intron | 40.0% | |
| GAAGCAGAGTATGGTAGTTA+GGG | + | chr4.4:4396716-4396735 | None:intergenic | 40.0% | |
| GAATACGGGTTTGTGCTTAA+TGG | - | chr4.4:4397075-4397094 | MS.gene20200:intron | 40.0% | |
| GACAATGTTGTGAAGTTAGG+AGG | + | chr4.4:4398634-4398653 | None:intergenic | 40.0% | |
| GATTCCACGCATTAAATGCA+TGG | + | chr4.4:4397464-4397483 | None:intergenic | 40.0% | |
| GATTGTATTGCAATGCAGAC+TGG | - | chr4.4:4400491-4400510 | MS.gene20200:CDS | 40.0% | |
| GCAACTTCTTTGAGTGATTC+AGG | - | chr4.4:4399909-4399928 | MS.gene20200:intron | 40.0% | |
| GCCAAAATTAATCACAGGCA+TGG | + | chr4.4:4396868-4396887 | None:intergenic | 40.0% | |
| GCCTAAAGTAAAAAACCCTG+AGG | - | chr4.4:4396614-4396633 | MS.gene20200:CDS | 40.0% | |
| GCCTTCTTTGCAAATGTTAC+TGG | - | chr4.4:4398802-4398821 | MS.gene20200:intron | 40.0% | |
| GGAATGCAAACATGAACCAA+TGG | - | chr4.4:4398896-4398915 | MS.gene20200:CDS | 40.0% | |
| GGGAAACATTTGAGAAACCT+AGG | - | chr4.4:4400344-4400363 | MS.gene20200:CDS | 40.0% | |
| GTCGCCCAAGTTTCTAATAT+TGG | - | chr4.4:4396942-4396961 | MS.gene20200:CDS | 40.0% | |
| GTGTGGTATGTTAATAACCG+AGG | - | chr4.4:4398257-4398276 | MS.gene20200:intron | 40.0% | |
| GTGTTGGAGAATTTCGAGAA+AGG | + | chr4.4:4396358-4396377 | None:intergenic | 40.0% | |
| TAATTCCATGCCATAGGACA+AGG | - | chr4.4:4398315-4398334 | MS.gene20200:intron | 40.0% | |
| TACAGTGACAGCATCAACTA+TGG | - | chr4.4:4396299-4396318 | MS.gene20200:CDS | 40.0% | |
| TAGTCACAATGTCATACCTG+GGG | + | chr4.4:4400291-4400310 | None:intergenic | 40.0% | |
| TATCCCAAACTTGAACCTTC+TGG | + | chr4.4:4399034-4399053 | None:intergenic | 40.0% | |
| TATGAGATATACGCTAGGAC+TGG | - | chr4.4:4397941-4397960 | MS.gene20200:CDS | 40.0% | |
| TCCTAGATTACGCTGTTGAT+TGG | - | chr4.4:4399464-4399483 | MS.gene20200:intron | 40.0% | |
| TCGAGGATTTAGGAAGATTC+TGG | + | chr4.4:4396476-4396495 | None:intergenic | 40.0% | |
| TTTGAGAGGTAAATCGACGT+AGG | + | chr4.4:4396424-4396443 | None:intergenic | 40.0% | |
| TTTGGGTAATTCCATGCCAT+AGG | - | chr4.4:4398309-4398328 | MS.gene20200:intron | 40.0% | |
| ! | ACTTCCAGAAGGTTCAAGTT+TGG | - | chr4.4:4399027-4399046 | MS.gene20200:intron | 40.0% |
| ! | AGGCAATTAACTCGGTTTTC+TGG | - | chr4.4:4398875-4398894 | MS.gene20200:CDS | 40.0% |
| ! | AGTTGATGCTGTCACTGTAA+CGG | + | chr4.4:4396298-4396317 | None:intergenic | 40.0% |
| ! | CGATATATGTTTGTGGACTG+CGG | + | chr4.4:4399708-4399727 | None:intergenic | 40.0% |
| ! | CTTCCAACCCTGATTTTACA+AGG | + | chr4.4:4400131-4400150 | None:intergenic | 40.0% |
| ! | CTTCCAGAAGGTTCAAGTTT+GGG | - | chr4.4:4399028-4399047 | MS.gene20200:intron | 40.0% |
| ! | CTTTTGTGTATGATGACTGG+AGG | - | chr4.4:4400373-4400392 | MS.gene20200:CDS | 40.0% |
| ! | GGTAAATCGACGTAGGTTTT+AGG | + | chr4.4:4396417-4396436 | None:intergenic | 40.0% |
| ! | GTTGAAGGCCTTGTAAAATC+AGG | - | chr4.4:4400120-4400139 | MS.gene20200:CDS | 40.0% |
| !! | TACTGAAAGAGCACGAGTTT+TGG | - | chr4.4:4397999-4398018 | MS.gene20200:CDS | 40.0% |
| !! | TGGATGAAGCCATTTTACTC+AGG | - | chr4.4:4399101-4399120 | MS.gene20200:intron | 40.0% |
| !! | TTCTGAAACAGTCCTGAACT+TGG | + | chr4.4:4398350-4398369 | None:intergenic | 40.0% |
| !!! | ATTGCAATGCAGACTGGTTT+TGG | - | chr4.4:4400497-4400516 | MS.gene20200:CDS | 40.0% |
| AAGGATACGAGTGGAGTTGA+AGG | + | chr4.4:4396339-4396358 | None:intergenic | 45.0% | |
| AATCAGGGTTGGAAGAAGCA+AGG | - | chr4.4:4400136-4400155 | MS.gene20200:CDS | 45.0% | |
| ACATACCACACACACCATTG+TGG | + | chr4.4:4398248-4398267 | None:intergenic | 45.0% | |
| ACTGAACCAGTCGAGGATTT+AGG | + | chr4.4:4396486-4396505 | None:intergenic | 45.0% | |
| AGGTACTCAAATAAGTCGCG+TGG | + | chr4.4:4397601-4397620 | None:intergenic | 45.0% | |
| ATCAGCTGCTGAATCAGGAT+GGG | - | chr4.4:4398396-4398415 | MS.gene20200:intron | 45.0% | |
| ATCATAGCGCTTAAAAGGGG+AGG | + | chr4.4:4397920-4397939 | None:intergenic | 45.0% | |
| ATGAACATGGGCAACCTAAG+AGG | + | chr4.4:4398107-4398126 | None:intergenic | 45.0% | |
| ATGTGTTGAATGCGGTGTGT+TGG | + | chr4.4:4396374-4396393 | None:intergenic | 45.0% | |
| ATTGCGGAGAATTTGGAGGT+GGG | - | chr4.4:4400253-4400272 | MS.gene20200:CDS | 45.0% | |
| CAAATTCCCCCTTTCCGATA+CGG | - | chr4.4:4396440-4396459 | MS.gene20200:intron | 45.0% | |
| CACACCGCATTCAACACATT+CGG | - | chr4.4:4396375-4396394 | MS.gene20200:intron | 45.0% | |
| CATGGCGTAGCAATTCATCT+TGG | + | chr4.4:4397446-4397465 | None:intergenic | 45.0% | |
| CTCGAAAGTCTCAAAACCTC+TGG | - | chr4.4:4399864-4399883 | MS.gene20200:intron | 45.0% | |
| GAGCATACTACACTAACAGG+AGG | - | chr4.4:4397103-4397122 | MS.gene20200:intron | 45.0% | |
| GATGGGATTTCAGCACAAGA+TGG | - | chr4.4:4398413-4398432 | MS.gene20200:CDS | 45.0% | |
| GGAAGCAGAGTATGGTAGTT+AGG | + | chr4.4:4396717-4396736 | None:intergenic | 45.0% | |
| GGGATTCCTACTGGGTAATT+AGG | - | chr4.4:4396790-4396809 | MS.gene20200:intron | 45.0% | |
| GTGAACATTTCGGATGCTCA+AGG | - | chr4.4:4398163-4398182 | MS.gene20200:CDS | 45.0% | |
| GTGCATTGCTTACACACACT+AGG | + | chr4.4:4398490-4398509 | None:intergenic | 45.0% | |
| TACGCCATGCATTTAATGCG+TGG | - | chr4.4:4397457-4397476 | MS.gene20200:intron | 45.0% | |
| TGAACCAATGGCTTGATTCC+TGG | - | chr4.4:4398908-4398927 | MS.gene20200:CDS | 45.0% | |
| TGGCATTCTTGGAGGAGTTT+GGG | - | chr4.4:4400540-4400559 | MS.gene20200:CDS | 45.0% | |
| TGTAATAGGGACTTCCCGAA+TGG | - | chr4.4:4400072-4400091 | MS.gene20200:CDS | 45.0% | |
| ! | AGGCCTTGTAAAATCAGGGT+TGG | - | chr4.4:4400125-4400144 | MS.gene20200:CDS | 45.0% |
| !! | GAGTAGGAAAGTATCCACTG+AGG | - | chr4.4:4396680-4396699 | MS.gene20200:CDS | 45.0% |
| !!! | ACTGGTTTTGGCTGGTCAAA+TGG | - | chr4.4:4400509-4400528 | MS.gene20200:CDS | 45.0% |
| !!! | GAGCACGAGTTTTGGAATTC+AGG | - | chr4.4:4398007-4398026 | MS.gene20200:CDS | 45.0% |
| !!! | TTTGGTTTTCAGGGGGTTGT+TGG | - | chr4.4:4396993-4397012 | MS.gene20200:intron | 45.0% |
| AAAACCCTGAGGTCAGAGCA+TGG | - | chr4.4:4396625-4396644 | MS.gene20200:CDS | 50.0% | |
| AAACCCTGAGGTCAGAGCAT+GGG | - | chr4.4:4396626-4396645 | MS.gene20200:CDS | 50.0% | |
| AAGCGTGATCCGTATCGGAA+AGG | + | chr4.4:4396452-4396471 | None:intergenic | 50.0% | |
| AAGGCCAGAATCGTCCACAA+TGG | - | chr4.4:4398231-4398250 | MS.gene20200:intron | 50.0% | |
| ACTTCACGAAATCGCGAACC+AGG | + | chr4.4:4396762-4396781 | None:intergenic | 50.0% | |
| AGATGCCTTGTCCTATGGCA+TGG | + | chr4.4:4398323-4398342 | None:intergenic | 50.0% | |
| AGCGTGATCCGTATCGGAAA+GGG | + | chr4.4:4396451-4396470 | None:intergenic | 50.0% | |
| AGGCATCTGCTTCCAAGTTC+AGG | - | chr4.4:4398335-4398354 | MS.gene20200:intron | 50.0% | |
| ATAGGGACTTCCCGAATGGT+TGG | - | chr4.4:4400076-4400095 | MS.gene20200:CDS | 50.0% | |
| ATCGTCCACAATGGTGTGTG+TGG | - | chr4.4:4398240-4398259 | MS.gene20200:intron | 50.0% | |
| ATGCAAGGTGGGACAAACCA+AGG | - | chr4.4:4398212-4398231 | MS.gene20200:intron | 50.0% | |
| ATGTGTGGTATTGCTGAGCC+AGG | + | chr4.4:4398929-4398948 | None:intergenic | 50.0% | |
| ATTGTGGACGATTCTGGCCT+TGG | + | chr4.4:4398232-4398251 | None:intergenic | 50.0% | |
| CACACCATTGTGGACGATTC+TGG | + | chr4.4:4398238-4398257 | None:intergenic | 50.0% | |
| CAGCAGCTGATGCTAGTTCA+CGG | + | chr4.4:4398387-4398406 | None:intergenic | 50.0% | |
| CAGGAACAGGAAGCAGAGTA+TGG | + | chr4.4:4396725-4396744 | None:intergenic | 50.0% | |
| CATACTCTGCTTCCTGTTCC+TGG | - | chr4.4:4396723-4396742 | MS.gene20200:CDS | 50.0% | |
| CATCAGCTGCTGAATCAGGA+TGG | - | chr4.4:4398395-4398414 | MS.gene20200:intron | 50.0% | |
| CATTCTTGGAGGAGTTTGGG+TGG | - | chr4.4:4400543-4400562 | MS.gene20200:CDS | 50.0% | |
| CATTGCGGAGAATTTGGAGG+TGG | - | chr4.4:4400252-4400271 | MS.gene20200:CDS | 50.0% | |
| CCAGGGATAACAACAGAACC+AGG | + | chr4.4:4396744-4396763 | None:intergenic | 50.0% | |
| CTAGCATCAGCTGCTGAATC+AGG | - | chr4.4:4398391-4398410 | MS.gene20200:intron | 50.0% | |
| CTGGCATTCTTGGAGGAGTT+TGG | - | chr4.4:4400539-4400558 | MS.gene20200:CDS | 50.0% | |
| CTGGTCAAATGGAGTTGTGC+TGG | - | chr4.4:4400520-4400539 | MS.gene20200:CDS | 50.0% | |
| CTTCACGAAATCGCGAACCA+GGG | + | chr4.4:4396761-4396780 | None:intergenic | 50.0% | |
| GAAGCAGATGCCTTGTCCTA+TGG | + | chr4.4:4398328-4398347 | None:intergenic | 50.0% | |
| GCAAAAAACCCTCAGGCTCA+GGG | + | chr4.4:4396596-4396615 | None:intergenic | 50.0% | |
| GCTCAGCAATACCACACATG+AGG | - | chr4.4:4398930-4398949 | MS.gene20200:intron | 50.0% | |
| GTTGGAAGAAGCAAGGTCGT+TGG | - | chr4.4:4400143-4400162 | MS.gene20200:CDS | 50.0% | |
| TAGGGACTTCCCGAATGGTT+GGG | - | chr4.4:4400077-4400096 | MS.gene20200:CDS | 50.0% | |
| TCGGAAAGGGGGAATTTGAG+AGG | + | chr4.4:4396438-4396457 | None:intergenic | 50.0% | |
| TCGTGCTCTTTCAGTAGTGC+AGG | + | chr4.4:4397995-4398014 | None:intergenic | 50.0% | |
| TCTCGTGTACTCTGATCCAG+AGG | - | chr4.4:4396563-4396582 | MS.gene20200:CDS | 50.0% | |
| TGAAGTGGAGCCCAACCATT+CGG | + | chr4.4:4400090-4400109 | None:intergenic | 50.0% | |
| TGAGCCAGGAATCAAGCCAT+TGG | + | chr4.4:4398915-4398934 | None:intergenic | 50.0% | |
| TGAGTGATTCAGGACAGCAG+TGG | - | chr4.4:4399919-4399938 | MS.gene20200:intron | 50.0% | |
| TTGCGGAGAATTTGGAGGTG+GGG | - | chr4.4:4400254-4400273 | MS.gene20200:CDS | 50.0% | |
| TTGGGGTAAGTTGCAGACCA+TGG | - | chr4.4:4398695-4398714 | MS.gene20200:intron | 50.0% | |
| ! | AGTTGTGCTGGCATTCTTGG+AGG | - | chr4.4:4400532-4400551 | MS.gene20200:CDS | 50.0% |
| ! | CTGGAAAGCGTGATCCGTAT+CGG | + | chr4.4:4396457-4396476 | None:intergenic | 50.0% |
| ! | GATTTTGTCCCTGAGCCTGA+GGG | - | chr4.4:4396585-4396604 | MS.gene20200:CDS | 50.0% |
| ! | TGGAGTTGTGCTGGCATTCT+TGG | - | chr4.4:4400529-4400548 | MS.gene20200:CDS | 50.0% |
| !! | CCTGGTTCTGTTGTTATCCC+TGG | - | chr4.4:4396741-4396760 | MS.gene20200:CDS | 50.0% |
| !!! | CAATGCAGACTGGTTTTGGC+TGG | - | chr4.4:4400501-4400520 | MS.gene20200:CDS | 50.0% |
| AACGGACACTGAACCAGTCG+AGG | + | chr4.4:4396493-4396512 | None:intergenic | 55.0% | |
| AGGGTGAGTCTTGACCTCAG+TGG | + | chr4.4:4396697-4396716 | None:intergenic | 55.0% | |
| CGTGATCCGTATCGGAAAGG+GGG | + | chr4.4:4396449-4396468 | None:intergenic | 55.0% | |
| GAAGTGGAGCCCAACCATTC+GGG | + | chr4.4:4400089-4400108 | None:intergenic | 55.0% | |
| GCGTGATCCGTATCGGAAAG+GGG | + | chr4.4:4396450-4396469 | None:intergenic | 55.0% | |
| GGCAAAAAACCCTCAGGCTC+AGG | + | chr4.4:4396597-4396616 | None:intergenic | 55.0% | |
| GGCTAAGACAGCTCCCCATA+TGG | + | chr4.4:4398985-4399004 | None:intergenic | 55.0% | |
| GGCTCAGGGACAAAATCCTC+TGG | + | chr4.4:4396582-4396601 | None:intergenic | 55.0% | |
| GGTCAGAGCATGGGCGATTA+AGG | - | chr4.4:4396635-4396654 | MS.gene20200:CDS | 55.0% | |
| TAGCGCTTAAAAGGGGAGGC+TGG | + | chr4.4:4397916-4397935 | None:intergenic | 55.0% | |
| TGCGGAGAATTTGGAGGTGG+GGG | - | chr4.4:4400255-4400274 | MS.gene20200:CDS | 55.0% | |
| TGGGGGTGAATATGTACCCC+AGG | - | chr4.4:4400272-4400291 | MS.gene20200:CDS | 55.0% | |
| ! | GGATTTTGTCCCTGAGCCTG+AGG | - | chr4.4:4396584-4396603 | MS.gene20200:CDS | 55.0% |
| ! | TGGGGGTGCACCAATGACAA+TGG | + | chr4.4:4397158-4397177 | None:intergenic | 55.0% |
| ! | TGTGGACTGCGGTGCATGTT+TGG | + | chr4.4:4399697-4399716 | None:intergenic | 55.0% |
| ATCGCCCATGCTCTGACCTC+AGG | + | chr4.4:4396633-4396652 | None:intergenic | 60.0% | |
| CAACTCCAGCAGCACGAAGC+AGG | + | chr4.4:4399890-4399909 | None:intergenic | 60.0% | |
| TCGCCCATGCTCTGACCTCA+GGG | + | chr4.4:4396632-4396651 | None:intergenic | 60.0% | |
| AGCAGCACGAAGCAGGCCAG+AGG | + | chr4.4:4399883-4399902 | None:intergenic | 65.0% | |
| TCTGGCCTGCTTCGTGCTGC+TGG | - | chr4.4:4399882-4399901 | MS.gene20200:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4396252 | 4400592 | 4396252 | ID=MS.gene20200 |
| chr4.4 | mRNA | 4396252 | 4400592 | 4396252 | ID=MS.gene20200.t1;Parent=MS.gene20200 |
| chr4.4 | exon | 4400033 | 4400592 | 4400033 | ID=MS.gene20200.t1.exon1;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4400033 | 4400592 | 4400033 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4399720 | 4399839 | 4399720 | ID=MS.gene20200.t1.exon2;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4399720 | 4399839 | 4399720 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4398816 | 4398931 | 4398816 | ID=MS.gene20200.t1.exon3;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4398816 | 4398931 | 4398816 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4398592 | 4398692 | 4398592 | ID=MS.gene20200.t1.exon4;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4398592 | 4398692 | 4398592 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4398404 | 4398513 | 4398404 | ID=MS.gene20200.t1.exon5;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4398404 | 4398513 | 4398404 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4398145 | 4398217 | 4398145 | ID=MS.gene20200.t1.exon6;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4398145 | 4398217 | 4398145 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4397893 | 4398057 | 4397893 | ID=MS.gene20200.t1.exon7;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4397893 | 4398057 | 4397893 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4397722 | 4397809 | 4397722 | ID=MS.gene20200.t1.exon8;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4397722 | 4397809 | 4397722 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4396904 | 4397003 | 4396904 | ID=MS.gene20200.t1.exon9;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4396904 | 4397003 | 4396904 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4396551 | 4396764 | 4396551 | ID=MS.gene20200.t1.exon10;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4396551 | 4396764 | 4396551 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| chr4.4 | exon | 4396252 | 4396335 | 4396252 | ID=MS.gene20200.t1.exon11;Parent=MS.gene20200.t1 |
| chr4.4 | CDS | 4396252 | 4396335 | 4396252 | ID=cds.MS.gene20200.t1;Parent=MS.gene20200.t1 |
| Gene Sequence |
| Protein sequence |
