Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93736.t1 | AFK36109.1 | 99 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 1.10E-174 | 622.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93736.t1 | Q9C9X3 | 55.6 | 315 | 139 | 1 | 1 | 314 | 1 | 315 | 5.1e-96 | 352.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93736.t1 | I3S767 | 99.0 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 7.9e-175 | 622.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049294 | MS.gene93736 | 0.806709 | 7.21E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene93736 | -0.812971 | 3.24E-51 | -1.69E-46 |
| MS.gene049438 | MS.gene93736 | -0.821896 | 3.16E-53 | -1.69E-46 |
| MS.gene049599 | MS.gene93736 | 0.832646 | 8.39E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene93736 | -0.840522 | 8.27E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene93736 | -0.803073 | 4.15E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene93736 | 0.814993 | 1.16E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene93736 | -0.817438 | 3.30E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene93736 | -0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene93736 | 0.872848 | 2.32E-67 | -1.69E-46 |
| MS.gene050642 | MS.gene93736 | -0.831027 | 2.11E-55 | -1.69E-46 |
| MS.gene050762 | MS.gene93736 | -0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene93736 | -0.811539 | 6.66E-51 | -1.69E-46 |
| MS.gene050917 | MS.gene93736 | 0.853235 | 2.73E-61 | -1.69E-46 |
| MS.gene05119 | MS.gene93736 | 0.811526 | 6.70E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene93736 | -0.820519 | 6.57E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene93736 | -0.809892 | 1.51E-50 | -1.69E-46 |
| MS.gene052048 | MS.gene93736 | 0.81228 | 4.59E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene93736 | -0.840412 | 8.83E-58 | -1.69E-46 |
| MS.gene052178 | MS.gene93736 | -0.809723 | 1.64E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene93736 | 0.837024 | 6.63E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene93736 | -0.803774 | 2.97E-49 | -1.69E-46 |
| MS.gene052420 | MS.gene93736 | -0.851028 | 1.16E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene93736 | -0.846614 | 1.94E-59 | -1.69E-46 |
| MS.gene054379 | MS.gene93736 | -0.805468 | 1.32E-49 | -1.69E-46 |
| MS.gene054542 | MS.gene93736 | -0.800626 | 1.32E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene93736 | -0.828724 | 7.67E-55 | -1.69E-46 |
| MS.gene054983 | MS.gene93736 | -0.806672 | 7.34E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene93736 | -0.812018 | 5.23E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene93736 | -0.814544 | 1.46E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene93736 | 0.818481 | 1.92E-52 | -1.69E-46 |
| MS.gene056265 | MS.gene93736 | 0.816744 | 4.72E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene93736 | -0.808568 | 2.90E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene93736 | -0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene058467 | MS.gene93736 | -0.815124 | 1.09E-51 | -1.69E-46 |
| MS.gene058661 | MS.gene93736 | 0.881471 | 2.33E-70 | -1.69E-46 |
| MS.gene059033 | MS.gene93736 | 0.8413 | 5.17E-58 | -1.69E-46 |
| MS.gene059285 | MS.gene93736 | -0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene93736 | -0.808095 | 3.66E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene93736 | -0.822781 | 1.97E-53 | -1.69E-46 |
| MS.gene059872 | MS.gene93736 | 0.802341 | 5.87E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene93736 | -0.836554 | 8.74E-57 | -1.69E-46 |
| MS.gene060084 | MS.gene93736 | -0.81322 | 2.86E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene93736 | -0.805725 | 1.16E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene93736 | -0.830058 | 3.64E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene93736 | -0.841439 | 4.75E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93736 | MS.gene89484 | PPI |
| MS.gene28077 | MS.gene93736 | PPI |
| MS.gene93736 | MS.gene058336 | PPI |
| MS.gene93736 | MS.gene010215 | PPI |
| MS.gene93736 | MS.gene92405 | PPI |
| MS.gene93736 | MS.gene035891 | PPI |
| MS.gene57291 | MS.gene93736 | PPI |
| MS.gene93736 | MS.gene030809 | PPI |
| MS.gene93736 | MS.gene043964 | PPI |
| MS.gene93736 | MS.gene00058 | PPI |
| MS.gene056195 | MS.gene93736 | PPI |
| MS.gene93736 | MS.gene061777 | PPI |
| MS.gene45772 | MS.gene93736 | PPI |
| MS.gene93736 | MS.gene67887 | PPI |
| MS.gene93736 | MS.gene55897 | PPI |
| MS.gene016642 | MS.gene93736 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93736.t1 | MTR_8g107640 | 99.048 | 315 | 3 | 0 | 1 | 315 | 1 | 315 | 0.0 | 651 |
| MS.gene93736.t1 | MTR_6g071615 | 78.981 | 314 | 66 | 0 | 1 | 314 | 1 | 314 | 0.0 | 509 |
| MS.gene93736.t1 | MTR_1g112520 | 77.389 | 314 | 71 | 0 | 1 | 314 | 1 | 314 | 8.08e-180 | 499 |
| MS.gene93736.t1 | MTR_6g071605 | 74.204 | 314 | 81 | 0 | 1 | 314 | 1 | 314 | 2.66e-178 | 495 |
| MS.gene93736.t1 | MTR_6g071595 | 77.070 | 314 | 72 | 0 | 1 | 314 | 1 | 314 | 1.39e-171 | 478 |
| MS.gene93736.t1 | MTR_1g033560 | 59.236 | 314 | 124 | 3 | 1 | 312 | 1 | 312 | 8.86e-139 | 395 |
| MS.gene93736.t1 | MTR_6g071595 | 76.000 | 250 | 60 | 0 | 1 | 250 | 1 | 250 | 1.03e-137 | 390 |
| MS.gene93736.t1 | MTR_8g038150 | 40.694 | 317 | 181 | 3 | 1 | 312 | 1 | 315 | 2.17e-74 | 231 |
| MS.gene93736.t1 | MTR_8g038180 | 38.978 | 313 | 188 | 3 | 1 | 312 | 1 | 311 | 1.25e-72 | 227 |
| MS.gene93736.t1 | MTR_8g038220 | 38.658 | 313 | 189 | 3 | 1 | 312 | 1 | 311 | 1.15e-71 | 224 |
| MS.gene93736.t1 | MTR_3g018780 | 37.898 | 314 | 192 | 3 | 1 | 313 | 1 | 312 | 3.61e-71 | 223 |
| MS.gene93736.t1 | MTR_8g038220 | 38.361 | 305 | 186 | 2 | 9 | 312 | 7 | 310 | 1.89e-70 | 221 |
| MS.gene93736.t1 | MTR_3g018790 | 38.585 | 311 | 189 | 2 | 6 | 315 | 5 | 314 | 3.31e-70 | 221 |
| MS.gene93736.t1 | MTR_5g063670 | 37.224 | 317 | 193 | 6 | 1 | 314 | 1 | 314 | 1.17e-68 | 217 |
| MS.gene93736.t1 | MTR_0276s0050 | 36.278 | 317 | 198 | 3 | 1 | 315 | 1 | 315 | 6.21e-67 | 212 |
| MS.gene93736.t1 | MTR_8g038210 | 35.873 | 315 | 200 | 2 | 1 | 315 | 1 | 313 | 6.16e-66 | 209 |
| MS.gene93736.t1 | MTR_2g031980 | 36.093 | 302 | 191 | 2 | 12 | 312 | 11 | 311 | 6.26e-65 | 207 |
| MS.gene93736.t1 | MTR_8g038210 | 35.556 | 315 | 201 | 2 | 1 | 315 | 1 | 313 | 6.56e-64 | 204 |
| MS.gene93736.t1 | MTR_3g018790 | 34.568 | 243 | 157 | 2 | 74 | 315 | 19 | 260 | 4.33e-43 | 149 |
| MS.gene93736.t1 | MTR_6g028030 | 31.250 | 304 | 195 | 7 | 16 | 310 | 9 | 307 | 3.72e-37 | 135 |
| MS.gene93736.t1 | MTR_8g038170 | 29.545 | 308 | 192 | 6 | 22 | 312 | 12 | 311 | 5.49e-34 | 127 |
| MS.gene93736.t1 | MTR_8g038170 | 29.545 | 308 | 192 | 6 | 22 | 312 | 12 | 311 | 5.49e-34 | 127 |
| MS.gene93736.t1 | MTR_3g018920 | 35.096 | 208 | 99 | 4 | 6 | 209 | 5 | 180 | 6.77e-31 | 115 |
| MS.gene93736.t1 | MTR_3g018925 | 41.667 | 96 | 56 | 0 | 220 | 315 | 14 | 109 | 1.85e-16 | 74.3 |
| MS.gene93736.t1 | MTR_8g038090 | 49.275 | 69 | 34 | 1 | 245 | 312 | 22 | 90 | 8.01e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93736.t1 | AT1G68090 | 55.556 | 315 | 139 | 1 | 1 | 314 | 1 | 315 | 1.27e-128 | 369 |
| MS.gene93736.t1 | AT1G68090 | 52.400 | 250 | 118 | 1 | 1 | 249 | 1 | 250 | 3.24e-91 | 272 |
| MS.gene93736.t1 | AT1G68090 | 28.767 | 146 | 100 | 2 | 170 | 315 | 16 | 157 | 3.16e-11 | 63.2 |
| MS.gene93736.t1 | AT5G10230 | 39.936 | 313 | 186 | 2 | 1 | 312 | 1 | 312 | 2.50e-82 | 252 |
| MS.gene93736.t1 | AT5G10220 | 40.506 | 316 | 182 | 5 | 1 | 312 | 1 | 314 | 1.33e-81 | 250 |
| MS.gene93736.t1 | AT5G65020 | 40.635 | 315 | 182 | 4 | 1 | 312 | 1 | 313 | 4.23e-80 | 246 |
| MS.gene93736.t1 | AT1G35720 | 38.608 | 316 | 191 | 3 | 1 | 314 | 1 | 315 | 1.30e-73 | 229 |
| MS.gene93736.t1 | AT5G65020 | 39.655 | 290 | 170 | 4 | 26 | 312 | 11 | 298 | 2.68e-69 | 218 |
| MS.gene93736.t1 | AT5G65020 | 30.714 | 140 | 94 | 1 | 173 | 312 | 3 | 139 | 3.53e-13 | 69.3 |
| MS.gene93736.t1 | AT5G12380 | 37.143 | 315 | 191 | 4 | 1 | 312 | 1 | 311 | 7.41e-68 | 214 |
| MS.gene93736.t1 | AT2G38760 | 34.483 | 319 | 201 | 3 | 1 | 312 | 1 | 318 | 1.98e-62 | 201 |
| MS.gene93736.t1 | AT2G38750 | 29.582 | 311 | 186 | 9 | 26 | 314 | 19 | 318 | 5.90e-30 | 116 |
| MS.gene93736.t1 | AT2G38750 | 29.582 | 311 | 186 | 9 | 26 | 314 | 2 | 301 | 7.43e-30 | 115 |
Find 81 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTATCTTCTGAGCTTTC+TGG | 0.083778 | 4.2:+56211 | MS.gene93736:CDS |
| CATCCCAGCTCCAATATTTA+AGG | 0.208022 | 4.2:+56362 | MS.gene93736:CDS |
| AGACGGTCAGAGTCTGTTTA+AGG | 0.250402 | 4.2:-56294 | None:intergenic |
| TTCTGAGCTTTCTGGCAAAT+TGG | 0.253655 | 4.2:+56219 | MS.gene93736:CDS |
| TGGAGAATGCTATTCTTCTT+TGG | 0.262983 | 4.2:+56239 | MS.gene93736:CDS |
| CTATGGTCATTCATTGAAAA+AGG | 0.272511 | 4.2:+56721 | MS.gene93736:CDS |
| ACCTTTGCGAAATACTTTGC+AGG | 0.321834 | 4.2:-56910 | None:intergenic |
| TGCCTCTGGGGATCATAAAA+AGG | 0.322450 | 4.2:+56438 | MS.gene93736:CDS |
| GGTAAATCTGCCTTAAATAT+TGG | 0.325628 | 4.2:-56372 | None:intergenic |
| GTTTATCTTGACCATGATAT+TGG | 0.330089 | 4.2:+56409 | MS.gene93736:CDS |
| TAAAGCAGGTGAGAAGAAAC+TGG | 0.345893 | 4.2:+56613 | MS.gene93736:CDS |
| AAGTTGCATAGCATCGTCTC+TGG | 0.368282 | 4.2:-55912 | None:intergenic |
| TATTAACCTCGGGGCCTTCA+TGG | 0.371117 | 4.2:-56556 | None:intergenic |
| TTTCAATGAATGACCATAGT+TGG | 0.381777 | 4.2:-56717 | None:intergenic |
| GATAAACGCCGAATCTAGTA+TGG | 0.386843 | 4.2:-56393 | None:intergenic |
| GCCATTTCTCTATTAACCTC+GGG | 0.416575 | 4.2:-56566 | None:intergenic |
| ATGATCGCATCGCGGGTGGC+AGG | 0.418114 | 4.2:-56271 | None:intergenic |
| GCAATAAAGAATGAAACATC+AGG | 0.421465 | 4.2:+56841 | MS.gene93736:CDS |
| CATTTGGACTGCTACTGGTT+GGG | 0.425583 | 4.2:-57604 | None:intergenic |
| ACGTAAGGCAATGAAAGGTC+TGG | 0.431308 | 4.2:+57417 | MS.gene93736:CDS |
| CAGATTTACCATACTAGATT+CGG | 0.431656 | 4.2:+56385 | MS.gene93736:CDS |
| CCGATGACACGAAACTTATG+AGG | 0.444443 | 4.2:+57443 | MS.gene93736:CDS |
| TTTGAGAAGATCTTCAGAAT+AGG | 0.444725 | 4.2:-56188 | None:intergenic |
| TAGCTCTGTATTCTTGTTGG+AGG | 0.449864 | 4.2:-56165 | None:intergenic |
| TCTGCCTTAAATATTGGAGC+TGG | 0.456137 | 4.2:-56366 | None:intergenic |
| CCAACTGTGCGGCACTCCGT+TGG | 0.459909 | 4.2:-56670 | None:intergenic |
| GCAGTTCACTCGGAAACATC+TGG | 0.461957 | 4.2:+57547 | MS.gene93736:CDS |
| CCCCGAGGTTAATAGAGAAA+TGG | 0.469091 | 4.2:+56565 | MS.gene93736:CDS |
| CGTAAGGCAATGAAAGGTCT+GGG | 0.471119 | 4.2:+57418 | MS.gene93736:CDS |
| CGGAAACATCTGGCCACTAC+AGG | 0.473093 | 4.2:+57557 | MS.gene93736:CDS |
| AGGCATTTCTTCCAATATCA+TGG | 0.476155 | 4.2:-56420 | None:intergenic |
| GCCAAGGTTCTTTATAAAGC+AGG | 0.481064 | 4.2:+56599 | MS.gene93736:CDS |
| AGGTAGCTCTGTATTCTTGT+TGG | 0.495794 | 4.2:-56168 | None:intergenic |
| AGCCATTTCTCTATTAACCT+CGG | 0.502469 | 4.2:-56567 | None:intergenic |
| CTTAAATATTGGAGCTGGGA+TGG | 0.506218 | 4.2:-56361 | None:intergenic |
| TCTGTATTCTTGTTGGAGGT+AGG | 0.508043 | 4.2:-56161 | None:intergenic |
| CAACTTCACCGTGCTTTCAA+AGG | 0.508493 | 4.2:+55929 | MS.gene93736:CDS |
| CCTCATAAGTTTCGTGTCAT+CGG | 0.515712 | 4.2:-57443 | None:intergenic |
| CCAACGGAGTGCCGCACAGT+TGG | 0.517490 | 4.2:+56670 | MS.gene93736:CDS |
| GATATTGGAAGAAATGCCTC+TGG | 0.518328 | 4.2:+56424 | MS.gene93736:CDS |
| ACCTCGGGGCCTTCATGGCG+TGG | 0.520754 | 4.2:-56551 | None:intergenic |
| TTTAAGGATGATCGCATCGC+GGG | 0.525060 | 4.2:-56278 | None:intergenic |
| ATGTAGATCTATCTCACTCC+TGG | 0.533758 | 4.2:-57476 | None:intergenic |
| GCATTTGGACTGCTACTGGT+TGG | 0.546867 | 4.2:-57605 | None:intergenic |
| GAAATACTTTGCAGGACTCT+CGG | 0.548694 | 4.2:-56902 | None:intergenic |
| CTGCCTTAAATATTGGAGCT+GGG | 0.548696 | 4.2:-56365 | None:intergenic |
| ACCTGCTTTATAAAGAACCT+TGG | 0.551796 | 4.2:-56600 | None:intergenic |
| TCATAGAGATGCCACTCAGC+GGG | 0.554538 | 4.2:+56138 | MS.gene93736:CDS |
| ATGAATGACCATAGTTGGCA+TGG | 0.568883 | 4.2:-56712 | None:intergenic |
| AAGTATATTGATCACAGCGC+TGG | 0.572934 | 4.2:-56113 | None:intergenic |
| TGATCGCATCGCGGGTGGCA+GGG | 0.577286 | 4.2:-56270 | None:intergenic |
| TTGTGCAAATATTCAGCCAA+CGG | 0.579000 | 4.2:+56654 | MS.gene93736:CDS |
| AGAGAAGAAAAGCCCTGTAG+TGG | 0.580742 | 4.2:-57570 | None:intergenic |
| TTGCAGGACTCTCGGCACAT+TGG | 0.581738 | 4.2:-56894 | None:intergenic |
| GTAAGCACGCCACGCCATGA+AGG | 0.585985 | 4.2:+56542 | MS.gene93736:CDS |
| AGTTGCATAGCATCGTCTCT+GGG | 0.589297 | 4.2:-55911 | None:intergenic |
| AGAAGGAACCTTTGAAAGCA+CGG | 0.590481 | 4.2:-55937 | None:intergenic |
| ATATTGGAAGAAATGCCTCT+GGG | 0.593842 | 4.2:+56425 | MS.gene93736:CDS |
| GTCCTACGTAAGGCAATGAA+AGG | 0.594808 | 4.2:+57412 | MS.gene93736:CDS |
| GCTGAATGATGCAGTTCACT+CGG | 0.599454 | 4.2:+57537 | MS.gene93736:CDS |
| ATGTATGCAGGTCCTACGTA+AGG | 0.602486 | 4.2:+57402 | MS.gene93736:intron |
| AAGGATGATCGCATCGCGGG+TGG | 0.610475 | 4.2:-56275 | None:intergenic |
| GGAAACATCTGGCCACTACA+GGG | 0.629881 | 4.2:+57558 | MS.gene93736:CDS |
| GTTTAAGGATGATCGCATCG+CGG | 0.634734 | 4.2:-56279 | None:intergenic |
| TCCTGCAAAGTATTTCGCAA+AGG | 0.635917 | 4.2:+56909 | MS.gene93736:CDS |
| CAATAAAGAATGAAACATCA+GGG | 0.640821 | 4.2:+56842 | MS.gene93736:CDS |
| TTGGAGGTAGGCCCGCTGAG+TGG | 0.643177 | 4.2:-56149 | None:intergenic |
| TTGCATAGCATCGTCTCTGG+GGG | 0.646475 | 4.2:-55909 | None:intergenic |
| CCATTTCTCTATTAACCTCG+GGG | 0.647560 | 4.2:-56565 | None:intergenic |
| TCGAGAACATATAACTTCAG+TGG | 0.648591 | 4.2:-56335 | None:intergenic |
| AAAGCAGGTGAGAAGAAACT+GGG | 0.649440 | 4.2:+56614 | MS.gene93736:CDS |
| AATGGCTGAGAACGATGCCA+AGG | 0.650141 | 4.2:+56583 | MS.gene93736:CDS |
| GTTGCATAGCATCGTCTCTG+GGG | 0.658534 | 4.2:-55910 | None:intergenic |
| TTATGAGGGTGATTGTAACC+AGG | 0.659039 | 4.2:+57458 | MS.gene93736:CDS |
| CGATGACACGAAACTTATGA+GGG | 0.666861 | 4.2:+57444 | MS.gene93736:CDS |
| CTCATAGAGATGCCACTCAG+CGG | 0.668547 | 4.2:+56137 | MS.gene93736:CDS |
| GACCTTTCATTGCCTTACGT+AGG | 0.695083 | 4.2:-57414 | None:intergenic |
| GCCACGCCATGAAGGCCCCG+AGG | 0.698151 | 4.2:+56550 | MS.gene93736:CDS |
| TATTGGAAGAAATGCCTCTG+GGG | 0.710090 | 4.2:+56426 | MS.gene93736:CDS |
| GTAAGGCAATGAAAGGTCTG+GGG | 0.711244 | 4.2:+57419 | MS.gene93736:CDS |
| ATTTATGGCAGCCAACTGTG+CGG | 0.736814 | 4.2:-56681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTATTGTTAAAATAATTT+TGG | + | chr4.2:57051-57070 | MS.gene93736:intron | 10.0% |
| !!! | CTTATTGTTAAAATAATTTT+GGG | + | chr4.2:57052-57071 | MS.gene93736:intron | 10.0% |
| !! | AAATAAATACAATAAAGCTT+AGG | - | chr4.2:57193-57212 | None:intergenic | 15.0% |
| !! | GAATTAGAATTAGAATTAGA+AGG | - | chr4.2:56052-56071 | None:intergenic | 20.0% |
| !!! | TTAAAATAATTTTGGGAAGA+AGG | + | chr4.2:57059-57078 | MS.gene93736:intron | 20.0% |
| !!! | TTAAGGGTATAAATTTAAAG+TGG | - | chr4.2:56765-56784 | None:intergenic | 20.0% |
| ! | CAATAAAGAATGAAACATCA+GGG | + | chr4.2:56842-56861 | MS.gene93736:CDS | 25.0% |
| ! | TTACATATGCAAGTAAAATC+TGG | - | chr4.2:56526-56545 | None:intergenic | 25.0% |
| !! | CTCTTAAAAATTTTATTGCC+AGG | + | chr4.2:57341-57360 | MS.gene93736:intron | 25.0% |
| !! | TTTTATTGCCAGGATAATTA+AGG | + | chr4.2:57351-57370 | MS.gene93736:intron | 25.0% |
| !!! | CTGGCAATAAAATTTTTAAG+AGG | - | chr4.2:57343-57362 | None:intergenic | 25.0% |
| AAGGTGAAAATAATGTAGGA+GGG | - | chr4.2:56943-56962 | None:intergenic | 30.0% | |
| AGAATTAGAATTAGAAGGCA+TGG | - | chr4.2:56047-56066 | None:intergenic | 30.0% | |
| AGTGTTAACGCTAAATTATG+TGG | + | chr4.2:57288-57307 | MS.gene93736:intron | 30.0% | |
| CAGATTTACCATACTAGATT+CGG | + | chr4.2:56385-56404 | MS.gene93736:CDS | 30.0% | |
| CATCAAGGTGAAAATAATGT+AGG | - | chr4.2:56947-56966 | None:intergenic | 30.0% | |
| CTATGGTCATTCATTGAAAA+AGG | + | chr4.2:56721-56740 | MS.gene93736:CDS | 30.0% | |
| GAAGAAATGAAAACCAAAGA+AGG | - | chr4.2:55957-55976 | None:intergenic | 30.0% | |
| GCAATAAAGAATGAAACATC+AGG | + | chr4.2:56841-56860 | MS.gene93736:CDS | 30.0% | |
| GGCATGGTAAAAATGATTTA+TGG | - | chr4.2:56699-56718 | None:intergenic | 30.0% | |
| GGTAAATCTGCCTTAAATAT+TGG | - | chr4.2:56375-56394 | None:intergenic | 30.0% | |
| GTTTATCTTGACCATGATAT+TGG | + | chr4.2:56409-56428 | MS.gene93736:CDS | 30.0% | |
| TTTCAATGAATGACCATAGT+TGG | - | chr4.2:56720-56739 | None:intergenic | 30.0% | |
| TTTGAGAAGATCTTCAGAAT+AGG | - | chr4.2:56191-56210 | None:intergenic | 30.0% | |
| ! | AATTGTATTAGTCTCCATCA+AGG | - | chr4.2:56962-56981 | None:intergenic | 30.0% |
| ! | CTACATTATTTTCACCTTGA+TGG | + | chr4.2:56945-56964 | MS.gene93736:intron | 30.0% |
| !!! | TGGTTGTTTTTAAGGATAGA+GGG | + | chr4.2:57315-57334 | MS.gene93736:intron | 30.0% |
| !!! | TTGGTTGTTTTTAAGGATAG+AGG | + | chr4.2:57314-57333 | MS.gene93736:intron | 30.0% |
| ACCTGCTTTATAAAGAACCT+TGG | - | chr4.2:56603-56622 | None:intergenic | 35.0% | |
| ACCTTTCTTTCAGTGAGAAA+AGG | - | chr4.2:57257-57276 | None:intergenic | 35.0% | |
| ACGCTAAATTATGTGGTTGT+TGG | + | chr4.2:57295-57314 | MS.gene93736:intron | 35.0% | |
| AGCCATTTCTCTATTAACCT+CGG | - | chr4.2:56570-56589 | None:intergenic | 35.0% | |
| AGGCATTTCTTCCAATATCA+TGG | - | chr4.2:56423-56442 | None:intergenic | 35.0% | |
| ATATTGGAAGAAATGCCTCT+GGG | + | chr4.2:56425-56444 | MS.gene93736:CDS | 35.0% | |
| ATGAATTCAGCTTGGATAAG+TGG | - | chr4.2:56818-56837 | None:intergenic | 35.0% | |
| CAAGGTGAAAATAATGTAGG+AGG | - | chr4.2:56944-56963 | None:intergenic | 35.0% | |
| GCTTATCTCCTTAATTATCC+TGG | - | chr4.2:57362-57381 | None:intergenic | 35.0% | |
| TAAAGAGTGAGAGAAGACTA+TGG | - | chr4.2:56788-56807 | None:intergenic | 35.0% | |
| TCGAGAACATATAACTTCAG+TGG | - | chr4.2:56338-56357 | None:intergenic | 35.0% | |
| TGAGAGAAGACTATGGTTAA+GGG | - | chr4.2:56781-56800 | None:intergenic | 35.0% | |
| TGGAGAATGCTATTCTTCTT+TGG | + | chr4.2:56239-56258 | MS.gene93736:CDS | 35.0% | |
| TTATCCAAGCTGAATTCATC+AGG | + | chr4.2:56819-56838 | MS.gene93736:intron | 35.0% | |
| TTGTGCAAATATTCAGCCAA+CGG | + | chr4.2:56654-56673 | MS.gene93736:CDS | 35.0% | |
| TTTCTCACTGAAAGAAAGGT+TGG | + | chr4.2:57257-57276 | MS.gene93736:intron | 35.0% | |
| ! | AGTGGTAGCTTCAAGATTTT+TGG | - | chr4.2:56320-56339 | None:intergenic | 35.0% |
| ! | CATTTTTACCATGCCAACTA+TGG | + | chr4.2:56704-56723 | MS.gene93736:CDS | 35.0% |
| ! | GTCATCTTTTACCAGGATTT+GGG | + | chr4.2:56083-56102 | MS.gene93736:intron | 35.0% |
| ! | TCATTCTGTCATCTTTTACC+AGG | + | chr4.2:56076-56095 | MS.gene93736:intron | 35.0% |
| ! | TCCTTTTCTCACTGAAAGAA+AGG | + | chr4.2:57253-57272 | MS.gene93736:intron | 35.0% |
| ! | TGTCATCTTTTACCAGGATT+TGG | + | chr4.2:56082-56101 | MS.gene93736:intron | 35.0% |
| !! | AACTTGGTTGCTTTGAAACT+AGG | + | chr4.2:57085-57104 | MS.gene93736:intron | 35.0% |
| !! | AGCTTCAAGATTTTTGGAGA+CGG | - | chr4.2:56314-56333 | None:intergenic | 35.0% |
| !! | GCTTTTCTTCTCTCACTTTT+AGG | + | chr4.2:57580-57599 | MS.gene93736:CDS | 35.0% |
| !!! | GTGGTTGTTGGTTGTTTTTA+AGG | + | chr4.2:57307-57326 | MS.gene93736:intron | 35.0% |
| AAAGCAGGTGAGAAGAAACT+GGG | + | chr4.2:56614-56633 | MS.gene93736:CDS | 40.0% | |
| AAGTATATTGATCACAGCGC+TGG | - | chr4.2:56116-56135 | None:intergenic | 40.0% | |
| AATTCAGCTTGGATAAGTGG+CGG | - | chr4.2:56815-56834 | None:intergenic | 40.0% | |
| ACCTTTGCGAAATACTTTGC+AGG | - | chr4.2:56913-56932 | None:intergenic | 40.0% | |
| ATGAATGACCATAGTTGGCA+TGG | - | chr4.2:56715-56734 | None:intergenic | 40.0% | |
| ATGTAGATCTATCTCACTCC+TGG | - | chr4.2:57479-57498 | None:intergenic | 40.0% | |
| ATTGCCTGATGAATTCAGCT+TGG | - | chr4.2:56826-56845 | None:intergenic | 40.0% | |
| CATCCCAGCTCCAATATTTA+AGG | + | chr4.2:56362-56381 | MS.gene93736:CDS | 40.0% | |
| CCATTTCTCTATTAACCTCG+GGG | - | chr4.2:56568-56587 | None:intergenic | 40.0% | |
| CCTCATAAGTTTCGTGTCAT+CGG | - | chr4.2:57446-57465 | None:intergenic | 40.0% | |
| CGATGACACGAAACTTATGA+GGG | + | chr4.2:57444-57463 | MS.gene93736:CDS | 40.0% | |
| CTGCCTTAAATATTGGAGCT+GGG | - | chr4.2:56368-56387 | None:intergenic | 40.0% | |
| CTTAAATATTGGAGCTGGGA+TGG | - | chr4.2:56364-56383 | None:intergenic | 40.0% | |
| GAAATACTTTGCAGGACTCT+CGG | - | chr4.2:56905-56924 | None:intergenic | 40.0% | |
| GATAAACGCCGAATCTAGTA+TGG | - | chr4.2:56396-56415 | None:intergenic | 40.0% | |
| GATATTGGAAGAAATGCCTC+TGG | + | chr4.2:56424-56443 | MS.gene93736:CDS | 40.0% | |
| GCCAAGGTTCTTTATAAAGC+AGG | + | chr4.2:56599-56618 | MS.gene93736:CDS | 40.0% | |
| GCCATTTCTCTATTAACCTC+GGG | - | chr4.2:56569-56588 | None:intergenic | 40.0% | |
| GCTTTCAAAGGTTCCTTCTT+TGG | + | chr4.2:55941-55960 | MS.gene93736:intron | 40.0% | |
| GTGAGAGAAGACTATGGTTA+AGG | - | chr4.2:56782-56801 | None:intergenic | 40.0% | |
| TAAAGCAGGTGAGAAGAAAC+TGG | + | chr4.2:56613-56632 | MS.gene93736:CDS | 40.0% | |
| TATTGGAAGAAATGCCTCTG+GGG | + | chr4.2:56426-56445 | MS.gene93736:CDS | 40.0% | |
| TCTGCCTTAAATATTGGAGC+TGG | - | chr4.2:56369-56388 | None:intergenic | 40.0% | |
| TCTGTATTCTTGTTGGAGGT+AGG | - | chr4.2:56164-56183 | None:intergenic | 40.0% | |
| TTATCTGTACAACAACGTGC+TGG | + | chr4.2:57213-57232 | MS.gene93736:intron | 40.0% | |
| TTATGAGGGTGATTGTAACC+AGG | + | chr4.2:57458-57477 | MS.gene93736:CDS | 40.0% | |
| ! | AGAAGGAACCTTTGAAAGCA+CGG | - | chr4.2:55940-55959 | None:intergenic | 40.0% |
| ! | AGGTAGCTCTGTATTCTTGT+TGG | - | chr4.2:56171-56190 | None:intergenic | 40.0% |
| ! | TACCTTTTTATGATCCCCAG+AGG | - | chr4.2:56443-56462 | None:intergenic | 40.0% |
| ! | TAGCTCTGTATTCTTGTTGG+AGG | - | chr4.2:56168-56187 | None:intergenic | 40.0% |
| ! | TCCTGCAAAGTATTTCGCAA+AGG | + | chr4.2:56909-56928 | MS.gene93736:CDS | 40.0% |
| ! | TTCTGAGCTTTCTGGCAAAT+TGG | + | chr4.2:56219-56238 | MS.gene93736:CDS | 40.0% |
| AAGTTGCATAGCATCGTCTC+TGG | - | chr4.2:55915-55934 | None:intergenic | 45.0% | |
| ACGTAAGGCAATGAAAGGTC+TGG | + | chr4.2:57417-57436 | MS.gene93736:CDS | 45.0% | |
| ACGTTTGCCACTATGTATGC+AGG | + | chr4.2:57390-57409 | MS.gene93736:intron | 45.0% | |
| AGACGGTCAGAGTCTGTTTA+AGG | - | chr4.2:56297-56316 | None:intergenic | 45.0% | |
| AGAGAAGAAAAGCCCTGTAG+TGG | - | chr4.2:57573-57592 | None:intergenic | 45.0% | |
| AGTTGCATAGCATCGTCTCT+GGG | - | chr4.2:55914-55933 | None:intergenic | 45.0% | |
| ATGTATGCAGGTCCTACGTA+AGG | + | chr4.2:57402-57421 | MS.gene93736:intron | 45.0% | |
| ATTTATGGCAGCCAACTGTG+CGG | - | chr4.2:56684-56703 | None:intergenic | 45.0% | |
| CAACTTCACCGTGCTTTCAA+AGG | + | chr4.2:55929-55948 | MS.gene93736:CDS | 45.0% | |
| CCCCGAGGTTAATAGAGAAA+TGG | + | chr4.2:56565-56584 | MS.gene93736:CDS | 45.0% | |
| CCGATGACACGAAACTTATG+AGG | + | chr4.2:57443-57462 | MS.gene93736:CDS | 45.0% | |
| CGCTTATCTTCTGAGCTTTC+TGG | + | chr4.2:56211-56230 | MS.gene93736:CDS | 45.0% | |
| CGTAAGGCAATGAAAGGTCT+GGG | + | chr4.2:57418-57437 | MS.gene93736:CDS | 45.0% | |
| GACCTTTCATTGCCTTACGT+AGG | - | chr4.2:57417-57436 | None:intergenic | 45.0% | |
| GCTGAATGATGCAGTTCACT+CGG | + | chr4.2:57537-57556 | MS.gene93736:CDS | 45.0% | |
| GTAAGGCAATGAAAGGTCTG+GGG | + | chr4.2:57419-57438 | MS.gene93736:CDS | 45.0% | |
| GTCCTACGTAAGGCAATGAA+AGG | + | chr4.2:57412-57431 | MS.gene93736:CDS | 45.0% | |
| GTTTAAGGATGATCGCATCG+CGG | - | chr4.2:56282-56301 | None:intergenic | 45.0% | |
| TTTAAGGATGATCGCATCGC+GGG | - | chr4.2:56281-56300 | None:intergenic | 45.0% | |
| TTTGGGAAGAAGGAGCAACT+TGG | + | chr4.2:57069-57088 | MS.gene93736:intron | 45.0% | |
| ! | AGGAATAGGGGGTACATTCA+CGG | - | chr4.2:55885-55904 | None:intergenic | 45.0% |
| ! | TGCCTCTGGGGATCATAAAA+AGG | + | chr4.2:56438-56457 | MS.gene93736:CDS | 45.0% |
| AATGGCTGAGAACGATGCCA+AGG | + | chr4.2:56583-56602 | MS.gene93736:CDS | 50.0% | |
| CGTAGGACCTGCATACATAG+TGG | - | chr4.2:57400-57419 | None:intergenic | 50.0% | |
| CTCATAGAGATGCCACTCAG+CGG | + | chr4.2:56137-56156 | MS.gene93736:CDS | 50.0% | |
| GCAGTTCACTCGGAAACATC+TGG | + | chr4.2:57547-57566 | MS.gene93736:CDS | 50.0% | |
| GGAAACATCTGGCCACTACA+GGG | + | chr4.2:57558-57577 | MS.gene93736:CDS | 50.0% | |
| GTTGCATAGCATCGTCTCTG+GGG | - | chr4.2:55913-55932 | None:intergenic | 50.0% | |
| TATTAACCTCGGGGCCTTCA+TGG | - | chr4.2:56559-56578 | None:intergenic | 50.0% | |
| TCATAGAGATGCCACTCAGC+GGG | + | chr4.2:56138-56157 | MS.gene93736:CDS | 50.0% | |
| TTGCATAGCATCGTCTCTGG+GGG | - | chr4.2:55912-55931 | None:intergenic | 50.0% | |
| CGGAAACATCTGGCCACTAC+AGG | + | chr4.2:57557-57576 | MS.gene93736:CDS | 55.0% | |
| TCTGGGGGAAGGAGGAATAG+GGG | - | chr4.2:55897-55916 | None:intergenic | 55.0% | |
| TTGCAGGACTCTCGGCACAT+TGG | - | chr4.2:56897-56916 | None:intergenic | 55.0% | |
| ! | ATAGCATCGTCTCTGGGGGA+AGG | - | chr4.2:55908-55927 | None:intergenic | 55.0% |
| ! | CTCTGGGGGAAGGAGGAATA+GGG | - | chr4.2:55898-55917 | None:intergenic | 55.0% |
| ! | TCTCTGGGGGAAGGAGGAAT+AGG | - | chr4.2:55899-55918 | None:intergenic | 55.0% |
| !! | CTGGTGTCACACCCAAATCC+TGG | - | chr4.2:56097-56116 | None:intergenic | 55.0% |
| AAGGATGATCGCATCGCGGG+TGG | - | chr4.2:56278-56297 | None:intergenic | 60.0% | |
| CTGGGGGAAGGAGGAATAGG+GGG | - | chr4.2:55896-55915 | None:intergenic | 60.0% | |
| GTAAGCACGCCACGCCATGA+AGG | + | chr4.2:56542-56561 | MS.gene93736:CDS | 60.0% | |
| ATGATCGCATCGCGGGTGGC+AGG | - | chr4.2:56274-56293 | None:intergenic | 65.0% | |
| CCAACTGTGCGGCACTCCGT+TGG | - | chr4.2:56673-56692 | None:intergenic | 65.0% | |
| TGATCGCATCGCGGGTGGCA+GGG | - | chr4.2:56273-56292 | None:intergenic | 65.0% | |
| TTGGAGGTAGGCCCGCTGAG+TGG | - | chr4.2:56152-56171 | None:intergenic | 65.0% | |
| ! | GCATCGTCTCTGGGGGAAGG+AGG | - | chr4.2:55905-55924 | None:intergenic | 65.0% |
| !! | CCAACGGAGTGCCGCACAGT+TGG | + | chr4.2:56670-56689 | MS.gene93736:CDS | 65.0% |
| ACCTCGGGGCCTTCATGGCG+TGG | - | chr4.2:56554-56573 | None:intergenic | 70.0% | |
| GCCACGCCATGAAGGCCCCG+AGG | + | chr4.2:56550-56569 | MS.gene93736:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 55875 | 57615 | 55875 | ID=MS.gene93736 |
| chr4.2 | mRNA | 55875 | 57615 | 55875 | ID=MS.gene93736.t1;Parent=MS.gene93736 |
| chr4.2 | exon | 55875 | 55950 | 55875 | ID=MS.gene93736.t1.exon1;Parent=MS.gene93736.t1 |
| chr4.2 | CDS | 55875 | 55950 | 55875 | ID=cds.MS.gene93736.t1;Parent=MS.gene93736.t1 |
| chr4.2 | exon | 56098 | 56459 | 56098 | ID=MS.gene93736.t1.exon2;Parent=MS.gene93736.t1 |
| chr4.2 | CDS | 56098 | 56459 | 56098 | ID=cds.MS.gene93736.t1;Parent=MS.gene93736.t1 |
| chr4.2 | exon | 56527 | 56742 | 56527 | ID=MS.gene93736.t1.exon3;Parent=MS.gene93736.t1 |
| chr4.2 | CDS | 56527 | 56742 | 56527 | ID=cds.MS.gene93736.t1;Parent=MS.gene93736.t1 |
| chr4.2 | exon | 56841 | 56930 | 56841 | ID=MS.gene93736.t1.exon4;Parent=MS.gene93736.t1 |
| chr4.2 | CDS | 56841 | 56930 | 56841 | ID=cds.MS.gene93736.t1;Parent=MS.gene93736.t1 |
| chr4.2 | exon | 57412 | 57615 | 57412 | ID=MS.gene93736.t1.exon5;Parent=MS.gene93736.t1 |
| chr4.2 | CDS | 57412 | 57615 | 57412 | ID=cds.MS.gene93736.t1;Parent=MS.gene93736.t1 |
| Gene Sequence |
| Protein sequence |
