Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066027.t1 | RHN80358.1 | 98.2 | 772 | 14 | 0 | 1 | 772 | 54 | 825 | 0.00E+00 | 1505 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066027.t1 | Q8S403 | 65.5 | 788 | 248 | 7 | 1 | 771 | 1 | 781 | 3.1e-296 | 1018.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066027.t1 | G7I4U1 | 98.2 | 772 | 14 | 0 | 1 | 772 | 1 | 772 | 0.0e+00 | 1505.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049335 | MS.gene066027 | 0.80468 | 1.92E-49 | -1.69E-46 |
MS.gene050612 | MS.gene066027 | -0.802205 | 6.27E-49 | -1.69E-46 |
MS.gene051138 | MS.gene066027 | 0.825579 | 4.34E-54 | -1.69E-46 |
MS.gene051364 | MS.gene066027 | 0.800837 | 1.19E-48 | -1.69E-46 |
MS.gene051749 | MS.gene066027 | 0.842646 | 2.28E-58 | -1.69E-46 |
MS.gene051907 | MS.gene066027 | 0.81753 | 3.14E-52 | -1.69E-46 |
MS.gene051973 | MS.gene066027 | 0.841116 | 5.77E-58 | -1.69E-46 |
MS.gene052129 | MS.gene066027 | 0.805403 | 1.36E-49 | -1.69E-46 |
MS.gene052211 | MS.gene066027 | 0.80911 | 2.23E-50 | -1.69E-46 |
MS.gene05244 | MS.gene066027 | 0.804257 | 2.36E-49 | -1.69E-46 |
MS.gene052606 | MS.gene066027 | 0.835375 | 1.74E-56 | -1.69E-46 |
MS.gene054884 | MS.gene066027 | 0.822109 | 2.82E-53 | -1.69E-46 |
MS.gene056218 | MS.gene066027 | 0.800046 | 1.73E-48 | -1.69E-46 |
MS.gene056224 | MS.gene066027 | 0.810739 | 9.92E-51 | -1.69E-46 |
MS.gene056590 | MS.gene066027 | 0.823631 | 1.25E-53 | -1.69E-46 |
MS.gene056591 | MS.gene066027 | 0.822848 | 1.90E-53 | -1.69E-46 |
MS.gene056678 | MS.gene066027 | 0.807355 | 5.26E-50 | -1.69E-46 |
MS.gene056748 | MS.gene066027 | 0.855461 | 6.21E-62 | -1.69E-46 |
MS.gene056856 | MS.gene066027 | 0.862823 | 3.86E-64 | -1.69E-46 |
MS.gene056988 | MS.gene066027 | 0.833869 | 4.16E-56 | -1.69E-46 |
MS.gene057768 | MS.gene066027 | 0.802714 | 4.92E-49 | -1.69E-46 |
MS.gene058158 | MS.gene066027 | 0.822338 | 2.50E-53 | -1.69E-46 |
MS.gene058603 | MS.gene066027 | 0.839548 | 1.48E-57 | -1.69E-46 |
MS.gene058838 | MS.gene066027 | -0.808104 | 3.65E-50 | -1.69E-46 |
MS.gene05914 | MS.gene066027 | -0.811334 | 7.37E-51 | -1.69E-46 |
MS.gene059955 | MS.gene066027 | 0.803752 | 3.00E-49 | -1.69E-46 |
MS.gene061044 | MS.gene066027 | 0.800821 | 1.20E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066027.t1 | MTR_1g075640 | 98.187 | 772 | 14 | 0 | 1 | 772 | 1 | 772 | 0.0 | 1583 |
MS.gene066027.t1 | MTR_1g041695 | 76.319 | 777 | 173 | 4 | 1 | 771 | 1 | 772 | 0.0 | 1204 |
MS.gene066027.t1 | MTR_8g069955 | 47.177 | 797 | 377 | 11 | 1 | 771 | 1 | 779 | 0.0 | 728 |
MS.gene066027.t1 | MTR_8g069955 | 46.554 | 769 | 367 | 11 | 1 | 743 | 1 | 751 | 0.0 | 687 |
MS.gene066027.t1 | MTR_8g069955 | 46.133 | 724 | 346 | 11 | 1 | 698 | 1 | 706 | 0.0 | 635 |
MS.gene066027.t1 | MTR_7g011350 | 34.783 | 782 | 478 | 15 | 2 | 765 | 1 | 768 | 8.64e-143 | 439 |
MS.gene066027.t1 | MTR_2g045780 | 34.701 | 804 | 480 | 18 | 2 | 771 | 1 | 793 | 8.76e-142 | 437 |
MS.gene066027.t1 | MTR_5g042150 | 33.079 | 786 | 490 | 14 | 4 | 771 | 3 | 770 | 2.80e-140 | 432 |
MS.gene066027.t1 | MTR_7g011330 | 34.689 | 787 | 487 | 16 | 2 | 771 | 1 | 777 | 6.62e-137 | 424 |
MS.gene066027.t1 | MTR_7g011330 | 34.904 | 785 | 485 | 16 | 2 | 771 | 1 | 774 | 8.86e-137 | 423 |
MS.gene066027.t1 | MTR_2g045780 | 32.877 | 730 | 447 | 16 | 2 | 699 | 1 | 719 | 8.29e-112 | 356 |
MS.gene066027.t1 | MTR_7g011280 | 38.035 | 397 | 238 | 5 | 381 | 771 | 30 | 424 | 6.08e-93 | 297 |
MS.gene066027.t1 | MTR_6g034015 | 41.714 | 175 | 82 | 3 | 617 | 771 | 2 | 176 | 1.44e-38 | 142 |
MS.gene066027.t1 | MTR_7g011310 | 29.177 | 401 | 253 | 9 | 2 | 387 | 1 | 385 | 4.29e-38 | 147 |
MS.gene066027.t1 | MTR_2g088870 | 28.571 | 371 | 230 | 14 | 404 | 754 | 91 | 446 | 3.04e-34 | 137 |
MS.gene066027.t1 | MTR_7g076560 | 29.706 | 340 | 210 | 13 | 424 | 747 | 76 | 402 | 3.70e-33 | 133 |
MS.gene066027.t1 | MTR_2g088870 | 28.571 | 371 | 228 | 15 | 404 | 754 | 91 | 444 | 1.27e-32 | 132 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066027.t1 | AT3G23430 | 65.609 | 788 | 247 | 7 | 1 | 771 | 1 | 781 | 0.0 | 1054 |
MS.gene066027.t1 | AT1G68740 | 45.718 | 794 | 397 | 11 | 1 | 771 | 1 | 783 | 0.0 | 686 |
MS.gene066027.t1 | AT1G68740 | 43.526 | 726 | 376 | 11 | 1 | 703 | 1 | 715 | 0.0 | 580 |
MS.gene066027.t1 | AT1G14040 | 32.883 | 815 | 496 | 13 | 2 | 771 | 1 | 809 | 1.10e-148 | 455 |
MS.gene066027.t1 | AT1G26730 | 35.302 | 779 | 465 | 14 | 2 | 771 | 1 | 749 | 7.94e-148 | 451 |
MS.gene066027.t1 | AT3G29060 | 32.888 | 824 | 464 | 15 | 2 | 767 | 1 | 793 | 1.14e-147 | 452 |
MS.gene066027.t1 | AT1G35350 | 34.955 | 781 | 466 | 15 | 2 | 771 | 1 | 750 | 3.81e-146 | 447 |
MS.gene066027.t1 | AT4G25350 | 33.848 | 777 | 473 | 11 | 2 | 772 | 1 | 742 | 9.34e-143 | 437 |
MS.gene066027.t1 | AT2G03240 | 32.812 | 832 | 484 | 15 | 2 | 771 | 1 | 819 | 4.03e-140 | 433 |
MS.gene066027.t1 | AT1G69480 | 33.164 | 787 | 481 | 14 | 2 | 765 | 1 | 765 | 4.72e-139 | 429 |
MS.gene066027.t1 | AT1G69480 | 33.164 | 787 | 481 | 14 | 2 | 765 | 1 | 765 | 4.72e-139 | 429 |
MS.gene066027.t1 | AT2G03260 | 31.941 | 814 | 499 | 14 | 2 | 771 | 1 | 803 | 3.95e-134 | 417 |
MS.gene066027.t1 | AT1G35350 | 39.961 | 513 | 294 | 5 | 268 | 771 | 59 | 566 | 3.15e-129 | 397 |
MS.gene066027.t1 | AT2G03260 | 38.058 | 515 | 307 | 4 | 267 | 771 | 78 | 590 | 6.24e-125 | 386 |
MS.gene066027.t1 | AT1G26730 | 32.771 | 711 | 442 | 13 | 2 | 706 | 1 | 681 | 8.72e-114 | 361 |
MS.gene066027.t1 | AT2G03250 | 29.184 | 723 | 468 | 15 | 2 | 707 | 1 | 696 | 7.70e-100 | 325 |
MS.gene066027.t1 | AT2G03250 | 28.595 | 612 | 401 | 12 | 2 | 604 | 1 | 585 | 4.66e-75 | 255 |
MS.gene066027.t1 | AT2G32295 | 28.342 | 374 | 223 | 17 | 424 | 772 | 98 | 451 | 1.38e-31 | 129 |
MS.gene066027.t1 | AT2G32295 | 28.342 | 374 | 223 | 17 | 424 | 772 | 98 | 451 | 1.38e-31 | 129 |
MS.gene066027.t1 | AT5G35730 | 27.515 | 338 | 220 | 12 | 424 | 747 | 102 | 428 | 1.82e-30 | 125 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATTCTCATTGCCATTCT+AGG | 0.174578 | 1.2:-58292949 | None:intergenic |
TATCCTTTATGCCATATTAT+TGG | 0.198668 | 1.2:+58300016 | MS.gene066027:CDS |
TCTCTTGTTTAATGTAAAAT+TGG | 0.199156 | 1.2:-58292039 | None:intergenic |
CACCCTCAAAACAACGTTTA+AGG | 0.208521 | 1.2:-58300512 | None:intergenic |
TTGGCTTGCTCAAAACTTAT+AGG | 0.228204 | 1.2:+58293130 | MS.gene066027:CDS |
CTCCTCCTTCGGCGTGGTTA+TGG | 0.243700 | 1.2:-58289954 | None:intergenic |
TTGAAGTTTACCTTATAAAA+TGG | 0.247316 | 1.2:-58299618 | None:intergenic |
ATCTCTAAGCCATGGATTTC+TGG | 0.248145 | 1.2:-58300362 | None:intergenic |
CGGGATTCTGATTATTCATT+AGG | 0.249123 | 1.2:+58292205 | MS.gene066027:CDS |
GGCGAAGTGCTTTGTGAATA+TGG | 0.251631 | 1.2:-58298250 | None:intergenic |
TGCAACCACTGTTGTCATTA+AGG | 0.259161 | 1.2:-58299277 | None:intergenic |
TATCATTTATAATTTGCTTT+AGG | 0.270894 | 1.2:-58292117 | None:intergenic |
ATGTTATCATGATCAGATTC+AGG | 0.293820 | 1.2:-58290033 | None:intergenic |
GATTCCATTGCTAAGGCATT+TGG | 0.302519 | 1.2:+58299897 | MS.gene066027:intron |
TCACTCTGGAAGACTATATA+TGG | 0.303195 | 1.2:+58299978 | MS.gene066027:CDS |
CCTGTATTATTTGCCTTTGT+TGG | 0.303206 | 1.2:-58292160 | None:intergenic |
ATGAGAATCTTTATGTTGTT+GGG | 0.307349 | 1.2:-58298310 | None:intergenic |
CGCCAACAATGACAGGAAAA+AGG | 0.314572 | 1.2:+58298269 | MS.gene066027:CDS |
TTGCAGGAAGTGCATCAATT+TGG | 0.321566 | 1.2:-58299347 | None:intergenic |
TTGTTCTCTTCCACGTATAT+AGG | 0.321930 | 1.2:-58299176 | None:intergenic |
CTTTGGCAGCTCACTGAATA+TGG | 0.322190 | 1.2:+58293368 | MS.gene066027:intron |
TGCATAGCACGCCAATAATA+TGG | 0.325310 | 1.2:-58300027 | None:intergenic |
CAGCTATTACTAGCATGCTT+TGG | 0.334532 | 1.2:+58293004 | MS.gene066027:CDS |
TCTTAATTTGCAGAATGTTT+AGG | 0.335433 | 1.2:+58292808 | MS.gene066027:intron |
AAAGCAAAGAGAATTGAAAA+TGG | 0.340353 | 1.2:-58289980 | None:intergenic |
TGATAACATAAATATCATTA+AGG | 0.344335 | 1.2:+58290047 | MS.gene066027:CDS |
GTGGAGCTCTATAGAGGCCT+TGG | 0.346019 | 1.2:+58293111 | MS.gene066027:CDS |
GCTCGAGTTGCATTTGTTCC+CGG | 0.355428 | 1.2:-58292976 | None:intergenic |
CAACCACTTATCAACTCTAT+TGG | 0.357066 | 1.2:+58300302 | MS.gene066027:CDS |
TGCAGAATGTTTAGGAGATT+CGG | 0.369539 | 1.2:+58292816 | MS.gene066027:intron |
AACCACTTATCAACTCTATT+GGG | 0.370941 | 1.2:+58300303 | MS.gene066027:CDS |
AGCTATTACTAGCATGCTTT+GGG | 0.372445 | 1.2:+58293005 | MS.gene066027:CDS |
TTATTAGGTTCTTAGACTAA+TGG | 0.374210 | 1.2:+58298215 | MS.gene066027:intron |
CCTTATCAGAACTAACGAAA+TGG | 0.375830 | 1.2:-58297738 | None:intergenic |
ACGAATGCCTCCTTCCATTC+TGG | 0.378946 | 1.2:-58289868 | None:intergenic |
TATGAGAATCTTTATGTTGT+TGG | 0.379645 | 1.2:-58298311 | None:intergenic |
TATGCTTAAGTGATGTCCTT+GGG | 0.382707 | 1.2:-58299230 | None:intergenic |
GTGAGGAAGAAAACCATAAA+AGG | 0.387305 | 1.2:+58291806 | MS.gene066027:CDS |
TCCTTTGCAGGGTTGTCTAC+AGG | 0.395365 | 1.2:+58298818 | MS.gene066027:intron |
CCATTTCGTTAGTTCTGATA+AGG | 0.398330 | 1.2:+58297738 | MS.gene066027:CDS |
AACTACTAGTTGTAACCTAT+TGG | 0.410734 | 1.2:+58299921 | MS.gene066027:CDS |
AGCCTGCACTTATTTATGTA+TGG | 0.411360 | 1.2:+58299147 | MS.gene066027:CDS |
CTTCCAGAGTGACAAGTCTC+AGG | 0.415804 | 1.2:-58299967 | None:intergenic |
ACTTCCTGCAATATTACTTC+TGG | 0.423000 | 1.2:+58299359 | MS.gene066027:CDS |
AGCCATGGATTTCTGGAGTT+AGG | 0.425098 | 1.2:-58300355 | None:intergenic |
ATAATTGTACAAGCTCTGTT+TGG | 0.426330 | 1.2:-58291847 | None:intergenic |
AGGAGGCATTCGTGAACTAT+TGG | 0.429457 | 1.2:+58289878 | MS.gene066027:CDS |
GTATTATTTGCCTTTGTTGG+CGG | 0.434115 | 1.2:-58292157 | None:intergenic |
CAGATTCAGGTGAGAGCTTG+AGG | 0.442326 | 1.2:-58290020 | None:intergenic |
CCAACAAAGGCAAATAATAC+AGG | 0.448041 | 1.2:+58292160 | MS.gene066027:CDS |
CTCGAGTTGCATTTGTTCCC+GGG | 0.455117 | 1.2:-58292975 | None:intergenic |
CTAACCAGAAGTAATATTGC+AGG | 0.460005 | 1.2:-58299363 | None:intergenic |
TCAGAATCTGTCTCTCGAAA+TGG | 0.463930 | 1.2:-58300825 | None:intergenic |
CTTATCAGAACTAACGAAAT+GGG | 0.470046 | 1.2:-58297737 | None:intergenic |
ACGCCAATAATATGGCATAA+AGG | 0.472830 | 1.2:-58300019 | None:intergenic |
GGATGAAACAGTAGCGGGTC+GGG | 0.473616 | 1.2:-58299569 | None:intergenic |
GAAAATGGAACCTCCTCCTT+CGG | 0.473857 | 1.2:-58289965 | None:intergenic |
GGCAATGAGAATTGATGTCC+CGG | 0.486915 | 1.2:+58292957 | MS.gene066027:CDS |
GAGGGCATTGGAATTTCTAC+AGG | 0.487620 | 1.2:+58300626 | MS.gene066027:CDS |
TAACATGGGAAAGTATGTTT+CGG | 0.489749 | 1.2:+58300192 | MS.gene066027:CDS |
AAGTTATTCGAAGAGGGCAT+TGG | 0.491191 | 1.2:+58300614 | MS.gene066027:CDS |
CTGTCTTCACTGCTCGGTAA+TGG | 0.492158 | 1.2:-58300794 | None:intergenic |
GACAACAGTGGTTGCAGCAA+TGG | 0.492576 | 1.2:+58299284 | MS.gene066027:CDS |
ACAACATAAAGATTCTCATA+TGG | 0.498007 | 1.2:+58298314 | MS.gene066027:CDS |
CTATGCTTAAGTGATGTCCT+TGG | 0.502908 | 1.2:-58299231 | None:intergenic |
TTTCGGCGATGGTAGCAGCC+GGG | 0.514299 | 1.2:+58300209 | MS.gene066027:CDS |
GATATTGAAGAAATTCGATA+AGG | 0.516328 | 1.2:+58293404 | MS.gene066027:CDS |
AATAATCAGAATCCCGTGCT+GGG | 0.518326 | 1.2:-58292198 | None:intergenic |
GATTTAGTGAACAATCCAAC+AGG | 0.519226 | 1.2:+58293030 | MS.gene066027:CDS |
GAATAATCAGAATCCCGTGC+TGG | 0.524327 | 1.2:-58292199 | None:intergenic |
CTTTCCCGCGTTCCCCAGCA+CGG | 0.526975 | 1.2:+58292185 | MS.gene066027:CDS |
AGCACTTCGCCAACAATGAC+AGG | 0.527144 | 1.2:+58298262 | MS.gene066027:CDS |
ATCCATACATAAATAAGTGC+AGG | 0.527262 | 1.2:-58299149 | None:intergenic |
AAAGAAAGGAAAGCCTAGAA+TGG | 0.527856 | 1.2:+58292936 | MS.gene066027:CDS |
GGCTGATCAACTAACTAGCC+AGG | 0.528042 | 1.2:+58299758 | MS.gene066027:CDS |
GTTTCGGCGATGGTAGCAGC+CGG | 0.528660 | 1.2:+58300208 | MS.gene066027:CDS |
AGAAATTTCACATACAGAAG+AGG | 0.536149 | 1.2:+58292852 | MS.gene066027:CDS |
CACCCTGAGACTTGTCACTC+TGG | 0.536341 | 1.2:+58299964 | MS.gene066027:CDS |
TGTGAATCATTTAGCTAACA+TGG | 0.536468 | 1.2:+58300177 | MS.gene066027:CDS |
TTTCCCGCGTTCCCCAGCAC+GGG | 0.537484 | 1.2:+58292186 | MS.gene066027:CDS |
GAATCCCGTGCTGGGGAACG+CGG | 0.539245 | 1.2:-58292190 | None:intergenic |
TGAGAATCTTTATGTTGTTG+GGG | 0.542063 | 1.2:-58298309 | None:intergenic |
TTGTGAATGAAATCTCCTGT+TGG | 0.543831 | 1.2:-58293045 | None:intergenic |
GTTTCCAAATGCCTTAGCAA+TGG | 0.544525 | 1.2:-58299901 | None:intergenic |
AATCCCGTGCTGGGGAACGC+GGG | 0.546305 | 1.2:-58292189 | None:intergenic |
ATCCCAATAGAGTTGATAAG+TGG | 0.549202 | 1.2:-58300305 | None:intergenic |
CACTTGAAGTTATTCGAAGA+GGG | 0.550159 | 1.2:+58300608 | MS.gene066027:CDS |
TATTACTAGCATGCTTTGGG+AGG | 0.550285 | 1.2:+58293008 | MS.gene066027:CDS |
ACGGAACTGTCTTCACTGCT+CGG | 0.550399 | 1.2:-58300800 | None:intergenic |
ATCCTGCAGCCCTTAAAAGA+AGG | 0.553004 | 1.2:-58299314 | None:intergenic |
GAATACAGATTCCATTGCTA+AGG | 0.561087 | 1.2:+58299890 | MS.gene066027:intron |
CATAACCACGCCGAAGGAGG+AGG | 0.563418 | 1.2:+58289955 | MS.gene066027:CDS |
ACTAAGTCATCTCTAAGCCA+TGG | 0.564904 | 1.2:-58300370 | None:intergenic |
AAGCTCAACTCATACCAGAA+TGG | 0.565158 | 1.2:+58289854 | MS.gene066027:CDS |
AAGAAAACCATAAAAGGCAG+TGG | 0.567667 | 1.2:+58291812 | MS.gene066027:CDS |
GCAGACAAAGTGATCAGCTA+TGG | 0.572036 | 1.2:+58300248 | MS.gene066027:CDS |
ATATAAGCTGACTCATTGCT+AGG | 0.573301 | 1.2:-58298902 | None:intergenic |
ACTATCATGCATTTCAAAGT+CGG | 0.575527 | 1.2:+58300547 | MS.gene066027:CDS |
GAGAATGAATTCATTGAGAG+AGG | 0.576531 | 1.2:+58292058 | MS.gene066027:CDS |
AGATTCAGGTGAGAGCTTGA+GGG | 0.580711 | 1.2:-58290019 | None:intergenic |
ATCCTAACTCCAGAAATCCA+TGG | 0.587682 | 1.2:+58300353 | MS.gene066027:CDS |
GGGAAAGTATGTTTCGGCGA+TGG | 0.588314 | 1.2:+58300198 | MS.gene066027:CDS |
TCAACTCATACCAGAATGGA+AGG | 0.589083 | 1.2:+58289858 | MS.gene066027:CDS |
GGAAGTGCATCAATTTGGCT+AGG | 0.589297 | 1.2:-58299342 | None:intergenic |
GTTACAAGTGTGCGAGACGG+TGG | 0.590064 | 1.2:+58300140 | MS.gene066027:intron |
AATGAGCATCTAAATAATGT+CGG | 0.590708 | 1.2:+58300771 | MS.gene066027:CDS |
CAAAACCATAACCACGCCGA+AGG | 0.591766 | 1.2:+58289949 | MS.gene066027:CDS |
AACCATAACCACGCCGAAGG+AGG | 0.596363 | 1.2:+58289952 | MS.gene066027:CDS |
AGAAATGGTGAAATTCTCAA+AGG | 0.597216 | 1.2:+58289825 | None:intergenic |
GCTGTATGTTACTCTCGCCC+CGG | 0.599822 | 1.2:-58300227 | None:intergenic |
TTCGGCGATGGTAGCAGCCG+GGG | 0.604999 | 1.2:+58300210 | MS.gene066027:CDS |
AGTCTTAATCACTTCTGTAG+TGG | 0.608252 | 1.2:+58300279 | MS.gene066027:CDS |
TCTGTCTCTCGAAATGGTAA+CGG | 0.611018 | 1.2:-58300819 | None:intergenic |
TTCCAGAGTGACAAGTCTCA+GGG | 0.611456 | 1.2:-58299966 | None:intergenic |
GTGAATCATTTAGCTAACAT+GGG | 0.613474 | 1.2:+58300178 | MS.gene066027:CDS |
TCTTAGACTAATGGACGAAG+TGG | 0.615048 | 1.2:+58298224 | MS.gene066027:CDS |
CGGATGAAACAGTAGCGGGT+CGG | 0.620064 | 1.2:-58299570 | None:intergenic |
GACACGGATGAAACAGTAGC+GGG | 0.621758 | 1.2:-58299574 | None:intergenic |
GCACTTGAAGTTATTCGAAG+AGG | 0.623377 | 1.2:+58300607 | MS.gene066027:CDS |
ATGCTTAAGTGATGTCCTTG+GGG | 0.641855 | 1.2:-58299229 | None:intergenic |
CAACAAAGGCAAATAATACA+GGG | 0.642045 | 1.2:+58292161 | MS.gene066027:CDS |
AGATTATGTTGCGAATGACA+CGG | 0.653819 | 1.2:-58299590 | None:intergenic |
GCAATGAGAATTGATGTCCC+GGG | 0.657527 | 1.2:+58292958 | MS.gene066027:CDS |
TTTGTTACAAGTGTGCGAGA+CGG | 0.662092 | 1.2:+58300137 | MS.gene066027:intron |
AAATTATAAATGATAGACGA+AGG | 0.670723 | 1.2:+58292125 | MS.gene066027:CDS |
ATAATCAGAATCCCGTGCTG+GGG | 0.677604 | 1.2:-58292197 | None:intergenic |
TGGAACCTCCTCCTTCGGCG+TGG | 0.689910 | 1.2:-58289960 | None:intergenic |
AAGTCGGACATGTTCAATCG+CGG | 0.696848 | 1.2:+58300563 | MS.gene066027:CDS |
CACTACCTTAATGACAACAG+TGG | 0.704785 | 1.2:+58299272 | MS.gene066027:CDS |
ATGGATGTAACCTATATACG+TGG | 0.713393 | 1.2:+58299166 | MS.gene066027:CDS |
ACTCATACCAGAATGGAAGG+AGG | 0.716098 | 1.2:+58289861 | MS.gene066027:CDS |
GCTTGATGATGAGCTAAACA+AGG | 0.730559 | 1.2:+58292012 | MS.gene066027:CDS |
CAGAGTGACAAGTCTCAGGG+TGG | 0.731138 | 1.2:-58299963 | None:intergenic |
TGACACGGATGAAACAGTAG+CGG | 0.738243 | 1.2:-58299575 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 58289829 | 58300854 | 58289829 | ID=MS.gene066027 |
chr1.2 | mRNA | 58289829 | 58300854 | 58289829 | ID=MS.gene066027.t1;Parent=MS.gene066027 |
chr1.2 | exon | 58289829 | 58290068 | 58289829 | ID=MS.gene066027.t1.exon1;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58289829 | 58290068 | 58289829 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58291806 | 58291886 | 58291806 | ID=MS.gene066027.t1.exon2;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58291806 | 58291886 | 58291806 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58291992 | 58292226 | 58291992 | ID=MS.gene066027.t1.exon3;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58291992 | 58292226 | 58291992 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58292821 | 58293151 | 58292821 | ID=MS.gene066027.t1.exon4;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58292821 | 58293151 | 58292821 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58293377 | 58293425 | 58293377 | ID=MS.gene066027.t1.exon5;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58293377 | 58293425 | 58293377 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58297688 | 58297759 | 58297688 | ID=MS.gene066027.t1.exon6;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58297688 | 58297759 | 58297688 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58298222 | 58298351 | 58298222 | ID=MS.gene066027.t1.exon7;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58298222 | 58298351 | 58298222 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58298828 | 58298948 | 58298828 | ID=MS.gene066027.t1.exon8;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58298828 | 58298948 | 58298828 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58299131 | 58299380 | 58299131 | ID=MS.gene066027.t1.exon9;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58299131 | 58299380 | 58299131 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58299525 | 58299629 | 58299525 | ID=MS.gene066027.t1.exon10;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58299525 | 58299629 | 58299525 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58299735 | 58299779 | 58299735 | ID=MS.gene066027.t1.exon11;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58299735 | 58299779 | 58299735 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58299898 | 58300050 | 58299898 | ID=MS.gene066027.t1.exon12;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58299898 | 58300050 | 58299898 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58300148 | 58300426 | 58300148 | ID=MS.gene066027.t1.exon13;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58300148 | 58300426 | 58300148 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58300511 | 58300647 | 58300511 | ID=MS.gene066027.t1.exon14;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58300511 | 58300647 | 58300511 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
chr1.2 | exon | 58300764 | 58300854 | 58300764 | ID=MS.gene066027.t1.exon15;Parent=MS.gene066027.t1 |
chr1.2 | CDS | 58300764 | 58300854 | 58300764 | ID=cds.MS.gene066027.t1;Parent=MS.gene066027.t1 |
Gene Sequence |
Protein sequence |