Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049841.t1 | AIY27528.1 | 99.6 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 3.10E-140 | 507.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049841.t1 | P48534 | 94.8 | 250 | 13 | 0 | 1 | 250 | 1 | 250 | 8.0e-137 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049841.t1 | A0A0H3UW77 | 99.6 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 2.2e-140 | 507.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049841 | MS.gene015008 | PPI |
| MS.gene049841 | MS.gene066508 | PPI |
| MS.gene049841 | MS.gene32806 | PPI |
| MS.gene049841 | MS.gene37417 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049841.t1 | MTR_4g061140 | 98.800 | 250 | 3 | 0 | 1 | 250 | 1 | 250 | 0.0 | 504 |
| MS.gene049841.t1 | MTR_4g061140 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 497 |
| MS.gene049841.t1 | MTR_4g061140 | 95.833 | 216 | 9 | 0 | 35 | 250 | 1 | 216 | 7.56e-153 | 424 |
| MS.gene049841.t1 | MTR_5g022510 | 63.750 | 240 | 86 | 1 | 8 | 247 | 6 | 244 | 3.36e-113 | 326 |
| MS.gene049841.t1 | MTR_4g073410 | 62.810 | 242 | 89 | 1 | 7 | 248 | 6 | 246 | 3.19e-109 | 317 |
| MS.gene049841.t1 | MTR_5g022510 | 63.768 | 207 | 74 | 1 | 41 | 247 | 14 | 219 | 4.43e-96 | 282 |
| MS.gene049841.t1 | MTR_5g008440 | 80.838 | 167 | 18 | 1 | 80 | 246 | 29 | 181 | 1.77e-90 | 266 |
| MS.gene049841.t1 | MTR_3g088160 | 45.703 | 256 | 113 | 6 | 16 | 246 | 101 | 355 | 2.09e-67 | 213 |
| MS.gene049841.t1 | MTR_3g088160 | 45.703 | 256 | 113 | 6 | 16 | 246 | 101 | 355 | 5.92e-67 | 213 |
| MS.gene049841.t1 | MTR_3g107060 | 39.407 | 236 | 120 | 7 | 20 | 246 | 93 | 314 | 3.68e-40 | 141 |
| MS.gene049841.t1 | MTR_0286s0010 | 26.897 | 290 | 153 | 11 | 5 | 246 | 39 | 317 | 1.85e-16 | 77.8 |
| MS.gene049841.t1 | MTR_6g008075 | 26.897 | 290 | 153 | 11 | 5 | 246 | 39 | 317 | 1.85e-16 | 77.8 |
| MS.gene049841.t1 | MTR_4g122640 | 30.233 | 215 | 106 | 8 | 73 | 248 | 112 | 321 | 3.16e-15 | 74.3 |
| MS.gene049841.t1 | MTR_8g087680 | 68.293 | 41 | 13 | 0 | 66 | 106 | 32 | 72 | 1.05e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049841.t1 | AT1G07890 | 80.400 | 250 | 49 | 0 | 1 | 250 | 1 | 250 | 5.15e-155 | 431 |
| MS.gene049841.t1 | AT1G07890 | 80.400 | 250 | 49 | 0 | 1 | 250 | 1 | 250 | 5.15e-155 | 431 |
| MS.gene049841.t1 | AT1G07890 | 80.400 | 250 | 49 | 0 | 1 | 250 | 1 | 250 | 5.15e-155 | 431 |
| MS.gene049841.t1 | AT1G07890 | 80.400 | 250 | 49 | 0 | 1 | 250 | 1 | 250 | 5.15e-155 | 431 |
| MS.gene049841.t1 | AT1G07890 | 80.400 | 250 | 49 | 0 | 1 | 250 | 1 | 250 | 5.15e-155 | 431 |
| MS.gene049841.t1 | AT1G07890 | 80.400 | 250 | 49 | 0 | 1 | 250 | 1 | 250 | 5.15e-155 | 431 |
| MS.gene049841.t1 | AT1G07890 | 80.400 | 250 | 49 | 0 | 1 | 250 | 1 | 250 | 5.15e-155 | 431 |
| MS.gene049841.t1 | AT1G07890 | 80.162 | 247 | 49 | 0 | 1 | 247 | 1 | 247 | 3.65e-153 | 426 |
| MS.gene049841.t1 | AT3G09640 | 80.972 | 247 | 46 | 1 | 3 | 249 | 4 | 249 | 8.62e-149 | 415 |
| MS.gene049841.t1 | AT3G09640 | 80.972 | 247 | 46 | 1 | 3 | 249 | 4 | 249 | 8.62e-149 | 415 |
| MS.gene049841.t1 | AT4G35000 | 66.529 | 242 | 80 | 1 | 6 | 247 | 4 | 244 | 5.30e-116 | 333 |
| MS.gene049841.t1 | AT4G35970 | 59.751 | 241 | 95 | 2 | 7 | 247 | 4 | 242 | 6.70e-100 | 293 |
| MS.gene049841.t1 | AT4G35970 | 58.904 | 219 | 88 | 2 | 7 | 225 | 4 | 220 | 5.93e-89 | 263 |
| MS.gene049841.t1 | AT1G77490 | 45.489 | 266 | 119 | 5 | 6 | 246 | 76 | 340 | 2.94e-67 | 214 |
| MS.gene049841.t1 | AT1G77490 | 45.489 | 266 | 119 | 5 | 6 | 246 | 76 | 340 | 3.31e-67 | 214 |
| MS.gene049841.t1 | AT4G08390 | 46.094 | 256 | 112 | 6 | 16 | 246 | 107 | 361 | 3.28e-65 | 207 |
| MS.gene049841.t1 | AT4G08390 | 46.094 | 256 | 112 | 6 | 16 | 246 | 107 | 361 | 3.28e-65 | 207 |
| MS.gene049841.t1 | AT4G08390 | 46.094 | 256 | 112 | 6 | 16 | 246 | 107 | 361 | 3.28e-65 | 207 |
| MS.gene049841.t1 | AT4G08390 | 46.094 | 256 | 112 | 6 | 16 | 246 | 106 | 360 | 3.79e-65 | 207 |
| MS.gene049841.t1 | AT4G08390 | 42.578 | 256 | 95 | 8 | 16 | 246 | 107 | 335 | 3.83e-53 | 175 |
| MS.gene049841.t1 | AT4G32320 | 36.653 | 251 | 125 | 7 | 5 | 246 | 98 | 323 | 1.66e-38 | 137 |
| MS.gene049841.t1 | AT4G31760 | 32.663 | 199 | 84 | 7 | 91 | 246 | 118 | 309 | 3.37e-17 | 79.7 |
| MS.gene049841.t1 | AT3G28200 | 26.786 | 280 | 156 | 10 | 12 | 247 | 26 | 300 | 2.93e-14 | 71.6 |
| MS.gene049841.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 43 | 262 | 1.19e-13 | 69.3 |
| MS.gene049841.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 119 | 307 | 1.37e-13 | 69.7 |
| MS.gene049841.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 166 | 354 | 1.74e-13 | 69.7 |
| MS.gene049841.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 108 | 327 | 2.47e-13 | 68.9 |
| MS.gene049841.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 155 | 374 | 4.79e-13 | 68.6 |
Find 83 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTGCTGTTGAGATTAC+TGG | 0.232804 | 4.4:+43782940 | MS.gene049841:CDS |
| TGATATCGCTGTTAGGCTTT+TGG | 0.241502 | 4.4:+43782769 | MS.gene049841:CDS |
| TCGCCTTCTCAACAGCCTTT+TGG | 0.306455 | 4.4:-43782175 | None:intergenic |
| CAGGACATTGTTGCTTTGTC+TGG | 0.318810 | 4.4:+43783803 | MS.gene049841:CDS |
| AAGCTCAGCTTGGTGCTTGA+TGG | 0.336855 | 4.4:-43782723 | None:intergenic |
| TCAACAAGTGGGCGGAATAC+AGG | 0.362317 | 4.4:-43784385 | None:intergenic |
| CGCTCCTCTTATGCTCCGTT+TGG | 0.364102 | 4.4:+43782235 | MS.gene049841:CDS |
| ACAAAGACTGGTGGTCCTTT+CGG | 0.381599 | 4.4:+43782698 | MS.gene049841:CDS |
| CGACCCTCTGGTGGTGGCTC+AGG | 0.382379 | 4.4:-43783624 | None:intergenic |
| GCTGCACACAAGGAGCGTTC+TGG | 0.387014 | 4.4:+43784145 | MS.gene049841:CDS |
| TCTTCAGTTGCCAAGTGATA+AGG | 0.411660 | 4.4:+43784348 | MS.gene049841:CDS |
| AAATCAGCATAGCTAATGAT+TGG | 0.419318 | 4.4:-43782812 | None:intergenic |
| ACGGTCTTGATATCGCTGTT+AGG | 0.422947 | 4.4:+43782762 | MS.gene049841:CDS |
| CCAGGGTGGAAAGGAACTTC+AGG | 0.424656 | 4.4:-43782967 | None:intergenic |
| TGCAGGTTCTGACCATTTGA+GGG | 0.426677 | 4.4:+43783748 | MS.gene049841:intron |
| TTGTGTAGATGGCACTCTGC+TGG | 0.426968 | 4.4:+43782659 | MS.gene049841:intron |
| TGAAATGATTAGGGAGTTGT+TGG | 0.432563 | 4.4:+43784306 | MS.gene049841:intron |
| CACTAACCCTTGGTGGCATC+AGG | 0.433823 | 4.4:-43783651 | None:intergenic |
| GGATGTGTTTGGCAAAGCTA+TGG | 0.443040 | 4.4:+43783769 | MS.gene049841:CDS |
| ATTGGGAATTGCTCCTTAAG+AGG | 0.447187 | 4.4:-43782794 | None:intergenic |
| TTTGATTCAAAGACAAAGAC+TGG | 0.447588 | 4.4:+43782686 | MS.gene049841:CDS |
| CAAGGAGCGTTCTGGATTTG+AGG | 0.450558 | 4.4:+43784153 | MS.gene049841:CDS |
| GGAGTTGTTGGGTGGTGAGA+AGG | 0.456331 | 4.4:+43784318 | MS.gene049841:CDS |
| TTGCAGGTTCTGACCATTTG+AGG | 0.456831 | 4.4:+43783747 | MS.gene049841:intron |
| GGCAAGCGACCCTCTGGTGG+TGG | 0.457136 | 4.4:-43783630 | None:intergenic |
| GGTAATCAGCACTCACGGTT+GGG | 0.463922 | 4.4:-43782154 | None:intergenic |
| GCATCAGGCAAGCGACCCTC+TGG | 0.466554 | 4.4:-43783636 | None:intergenic |
| GACCATTTGAGGGATGTGTT+TGG | 0.471367 | 4.4:+43783758 | MS.gene049841:CDS |
| ATCAAAAGCTATCTGAGCTT+GGG | 0.472564 | 4.4:+43784572 | MS.gene049841:CDS |
| CATCAAAAGCTATCTGAGCT+TGG | 0.474904 | 4.4:+43784571 | MS.gene049841:CDS |
| CTCAAAAGTGCCTTATCACT+TGG | 0.477819 | 4.4:-43784358 | None:intergenic |
| TACGCCAAACGGAGCATAAG+AGG | 0.478986 | 4.4:-43782239 | None:intergenic |
| AAGTTCCTTTCCACCCTGGT+AGG | 0.479219 | 4.4:+43782971 | MS.gene049841:CDS |
| AAAATAAAACTTACGCCAAA+CGG | 0.488936 | 4.4:-43782250 | None:intergenic |
| TATCACTTGGCAACTGAAGA+AGG | 0.489890 | 4.4:-43784345 | None:intergenic |
| TTTGTGGTTATGCAGTTGGC+TGG | 0.495045 | 4.4:+43782916 | MS.gene049841:intron |
| AGTAAACGTACCTCCCTACC+AGG | 0.495703 | 4.4:-43782985 | None:intergenic |
| CACCATGAGCAAGCTCAGCT+TGG | 0.497717 | 4.4:-43782733 | None:intergenic |
| AGTTCCTTTCCACCCTGGTA+GGG | 0.498212 | 4.4:+43782972 | MS.gene049841:CDS |
| GATGTGTTTGGCAAAGCTAT+GGG | 0.498498 | 4.4:+43783770 | MS.gene049841:CDS |
| AATCAGCATAGCTAATGATT+GGG | 0.504612 | 4.4:-43782811 | None:intergenic |
| GACATTGTTGCTTTGTCTGG+TGG | 0.505383 | 4.4:+43783806 | MS.gene049841:CDS |
| TGCCAAACACATCCCTCAAA+TGG | 0.508400 | 4.4:-43783760 | None:intergenic |
| ATGAAAGGATTAGAAGTCCA+TGG | 0.510614 | 4.4:-43784178 | None:intergenic |
| AAGGAGCGTTCTGGATTTGA+GGG | 0.511703 | 4.4:+43784154 | MS.gene049841:CDS |
| CACCAAGCTGAGCTTGCTCA+TGG | 0.514212 | 4.4:+43782731 | MS.gene049841:CDS |
| AGCTATGGGGCTTAGTGACC+AGG | 0.514461 | 4.4:+43783784 | MS.gene049841:CDS |
| CAACAAGTGGGCGGAATACA+GGG | 0.530888 | 4.4:-43784384 | None:intergenic |
| CGTGAGTGCTGATTACCAAA+AGG | 0.551875 | 4.4:+43782160 | MS.gene049841:CDS |
| TCCAGAACACTAACCCTTGG+TGG | 0.552948 | 4.4:-43783658 | None:intergenic |
| TCGCTTGCCTGATGCCACCA+AGG | 0.554221 | 4.4:+43783644 | MS.gene049841:CDS |
| TGGTAATCAGCACTCACGGT+TGG | 0.557293 | 4.4:-43782155 | None:intergenic |
| CGCTTGCCTGATGCCACCAA+GGG | 0.557551 | 4.4:+43783645 | MS.gene049841:CDS |
| TCAGGCAAGCGACCCTCTGG+TGG | 0.568572 | 4.4:-43783633 | None:intergenic |
| CACAGGTTTGCAGAAGCCTA+AGG | 0.569562 | 4.4:+43784703 | MS.gene049841:intron |
| TCCTTTCCACCCTGGTAGGG+AGG | 0.574276 | 4.4:+43782975 | MS.gene049841:CDS |
| ACCTCCCTACCAGGGTGGAA+AGG | 0.576958 | 4.4:-43782976 | None:intergenic |
| CCTGAAGTTCCTTTCCACCC+TGG | 0.578044 | 4.4:+43782967 | MS.gene049841:CDS |
| GCAGCATATTTCTCAACAAG+TGG | 0.582870 | 4.4:-43784397 | None:intergenic |
| TTACCAAAAGGCTGTTGAGA+AGG | 0.586567 | 4.4:+43782172 | MS.gene049841:CDS |
| TTGGTAGGGAGCTGCACACA+AGG | 0.589477 | 4.4:+43784135 | MS.gene049841:intron |
| GTTGCTGTTGAGATTACTGG+TGG | 0.592645 | 4.4:+43782943 | MS.gene049841:CDS |
| TAGCTATGCTGATTTCTACC+AGG | 0.595859 | 4.4:+43782820 | MS.gene049841:CDS |
| CAAGCCTGAGCCACCACCAG+AGG | 0.599599 | 4.4:+43783620 | MS.gene049841:CDS |
| GTTCTGGATTTGAGGGCCCA+TGG | 0.602005 | 4.4:+43784161 | MS.gene049841:CDS |
| TGAAAGGATTAGAAGTCCAT+GGG | 0.610134 | 4.4:-43784177 | None:intergenic |
| GAAATGATTAGGGAGTTGTT+GGG | 0.614317 | 4.4:+43784307 | MS.gene049841:intron |
| CAGACAAAGCAACAATGTCC+TGG | 0.616139 | 4.4:-43783802 | None:intergenic |
| AAGCCTGAGCCACCACCAGA+GGG | 0.625588 | 4.4:+43783621 | MS.gene049841:CDS |
| GATTCAAAGACAAAGACTGG+TGG | 0.639755 | 4.4:+43782689 | MS.gene049841:CDS |
| TTTCTTTGCTGATTATGCCG+AGG | 0.640041 | 4.4:+43784546 | MS.gene049841:CDS |
| CAGCATATTTCTCAACAAGT+GGG | 0.640937 | 4.4:-43784396 | None:intergenic |
| AGGCTGTTGAGAAGGCGAAG+AGG | 0.646869 | 4.4:+43782180 | MS.gene049841:CDS |
| ATGTGTTTGGCAAAGCTATG+GGG | 0.650358 | 4.4:+43783771 | MS.gene049841:CDS |
| AGTCAATACATACAATGGTG+TGG | 0.652135 | 4.4:-43783829 | None:intergenic |
| AAGGCGAAGAGGAAGCTCAG+AGG | 0.652638 | 4.4:+43782191 | MS.gene049841:CDS |
| CTTGCTCATGGTGCTAACAA+CGG | 0.654051 | 4.4:+43782743 | MS.gene049841:CDS |
| TGGTGCTTGATGGTTCCGAA+AGG | 0.654886 | 4.4:-43782713 | None:intergenic |
| TTGTTGGGTGGTGAGAAGGA+AGG | 0.658316 | 4.4:+43784322 | MS.gene049841:CDS |
| ATGATTAGGGAGTTGTTGGG+TGG | 0.662546 | 4.4:+43784310 | MS.gene049841:intron |
| AACGTACCTCCCTACCAGGG+TGG | 0.688696 | 4.4:-43782981 | None:intergenic |
| CATATTTCTCAACAAGTGGG+CGG | 0.689114 | 4.4:-43784393 | None:intergenic |
| GTAAACGTACCTCCCTACCA+GGG | 0.717378 | 4.4:-43782984 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACTCA+AGG | - | chr4.4:43783185-43783204 | None:intergenic | 10.0% |
| !! | AATATATATATTTATCTTCA+AGG | + | chr4.4:43784609-43784628 | MS.gene049841:intron | 10.0% |
| !! | CCAAATATAAAAAATAAATA+GGG | - | chr4.4:43783561-43783580 | None:intergenic | 10.0% |
| !! | TCCAAATATAAAAAATAAAT+AGG | - | chr4.4:43783562-43783581 | None:intergenic | 10.0% |
| !!! | ATTTAAAACACAAAAAAAAT+AGG | - | chr4.4:43784261-43784280 | None:intergenic | 10.0% |
| !!! | TATTTATTTTTTATATTTGG+AGG | + | chr4.4:43783561-43783580 | MS.gene049841:intron | 10.0% |
| !!! | TTTAAAACACAAAAAAAATA+GGG | - | chr4.4:43784260-43784279 | None:intergenic | 10.0% |
| !! | AGGAATATTAAATATACATA+CGG | - | chr4.4:43784422-43784441 | None:intergenic | 15.0% |
| !!! | ATCTGTTTGAATATTTTTTT+GGG | + | chr4.4:43782463-43782482 | MS.gene049841:intron | 15.0% |
| !!! | ATTATCAAAGTTTTAAACTA+TGG | + | chr4.4:43783911-43783930 | MS.gene049841:intron | 15.0% |
| !!! | ATTATCTAAGTTTTAAACTA+TGG | + | chr4.4:43783975-43783994 | MS.gene049841:intron | 15.0% |
| !!! | CCCTATTTATTTTTTATATT+TGG | + | chr4.4:43783558-43783577 | MS.gene049841:intron | 15.0% |
| !! | GATAATTAAACCAAAACAAA+AGG | - | chr4.4:43783596-43783615 | None:intergenic | 20.0% |
| !! | TATACTTAATGTAATTGGTA+GGG | + | chr4.4:43784121-43784140 | MS.gene049841:intron | 20.0% |
| !! | TTATACTTAATGTAATTGGT+AGG | + | chr4.4:43784120-43784139 | MS.gene049841:intron | 20.0% |
| !! | TTGGTTATACTTAATGTAAT+TGG | + | chr4.4:43784116-43784135 | MS.gene049841:intron | 20.0% |
| !!! | AATATTTTTTTGGGATGAAT+CGG | + | chr4.4:43782472-43782491 | MS.gene049841:intron | 20.0% |
| !!! | AATCCTTTTCATCATATTAT+TGG | + | chr4.4:43784447-43784466 | MS.gene049841:intron | 20.0% |
| !!! | ATGATGTTTCTTTAACTTTT+TGG | + | chr4.4:43783066-43783085 | MS.gene049841:intron | 20.0% |
| !!! | ATGATTTGACAATCAATTTT+TGG | + | chr4.4:43783119-43783138 | MS.gene049841:intron | 20.0% |
| !!! | ATTTTCTGCTTATTTTTTGT+AGG | + | chr4.4:43782268-43782287 | MS.gene049841:intron | 20.0% |
| !!! | GATCTGTTTGAATATTTTTT+TGG | + | chr4.4:43782462-43782481 | MS.gene049841:intron | 20.0% |
| !!! | TGATTTGTTTGAGATTTTTT+TGG | + | chr4.4:43782435-43782454 | MS.gene049841:intron | 20.0% |
| !!! | TTTAAAGTCAATACATACAA+TGG | - | chr4.4:43783837-43783856 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGTTTAATTATC+AGG | + | chr4.4:43783596-43783615 | MS.gene049841:intron | 20.0% |
| ! | AAAATAAAACTTACGCCAAA+CGG | - | chr4.4:43782253-43782272 | None:intergenic | 25.0% |
| ! | AAACAACTACAATCAATTGT+AGG | - | chr4.4:43783703-43783722 | None:intergenic | 25.0% |
| ! | AAACGCATTTGCAATTATTA+CGG | + | chr4.4:43783278-43783297 | MS.gene049841:intron | 25.0% |
| ! | AATCCAAAAACTCATTGATA+AGG | - | chr4.4:43783373-43783392 | None:intergenic | 25.0% |
| ! | ATGATGAAAAGGATTATCAT+AGG | - | chr4.4:43784442-43784461 | None:intergenic | 25.0% |
| ! | ATGCCAATAATATGATGAAA+AGG | - | chr4.4:43784453-43784472 | None:intergenic | 25.0% |
| ! | TACAATTGATTGTAGTTGTT+TGG | + | chr4.4:43783702-43783721 | MS.gene049841:intron | 25.0% |
| ! | TATGAGTTGTCAAAAATGAA+AGG | - | chr4.4:43784196-43784215 | None:intergenic | 25.0% |
| ! | TGATGTTGTTGAAATGATTA+GGG | + | chr4.4:43784297-43784316 | MS.gene049841:intron | 25.0% |
| ! | TTCATGTGGTATATAATGAT+AGG | + | chr4.4:43783151-43783170 | MS.gene049841:intron | 25.0% |
| ! | TTGATGTTGTTGAAATGATT+AGG | + | chr4.4:43784296-43784315 | MS.gene049841:intron | 25.0% |
| !! | TTTGGTTATAACTTTTCATG+TGG | + | chr4.4:43783137-43783156 | MS.gene049841:intron | 25.0% |
| !! | TTTTATATTTGGAGGCTAAT+TGG | + | chr4.4:43783569-43783588 | MS.gene049841:intron | 25.0% |
| !! | TTTTGGATTTCATACATTTC+TGG | + | chr4.4:43783384-43783403 | MS.gene049841:intron | 25.0% |
| !!! | ATATTTTTTTGGGATGAATC+GGG | + | chr4.4:43782473-43782492 | MS.gene049841:intron | 25.0% |
| !!! | GATTTATGTAGTTTGTTTTG+TGG | + | chr4.4:43782900-43782919 | MS.gene049841:intron | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | + | chr4.4:43783884-43783903 | MS.gene049841:intron | 25.0% |
| AAATACAACAAATCACTACC+TGG | - | chr4.4:43782841-43782860 | None:intergenic | 30.0% | |
| AAATCAGCATAGCTAATGAT+TGG | - | chr4.4:43782815-43782834 | None:intergenic | 30.0% | |
| AACACAAAAAAAATAGGGCA+TGG | - | chr4.4:43784255-43784274 | None:intergenic | 30.0% | |
| AATCAGCATAGCTAATGATT+GGG | - | chr4.4:43782814-43782833 | None:intergenic | 30.0% | |
| AATTAACCACATGTGATAAC+TGG | + | chr4.4:43783490-43783509 | MS.gene049841:intron | 30.0% | |
| ACACAAAAAAAATAGGGCAT+GGG | - | chr4.4:43784254-43784273 | None:intergenic | 30.0% | |
| TTTCTCATTGTTGATGTATG+TGG | + | chr4.4:43783016-43783035 | MS.gene049841:intron | 30.0% | |
| TTTGATTCAAAGACAAAGAC+TGG | + | chr4.4:43782686-43782705 | MS.gene049841:CDS | 30.0% | |
| ! | AGTCCTTATCAATGAGTTTT+TGG | + | chr4.4:43783367-43783386 | MS.gene049841:intron | 30.0% |
| ! | ATTTGATTCTCGATTTTTGC+AGG | + | chr4.4:43783731-43783750 | MS.gene049841:intron | 30.0% |
| !! | TGATGATTTGTTTGTGTAGA+TGG | + | chr4.4:43782648-43782667 | MS.gene049841:intron | 30.0% |
| AGTCAATACATACAATGGTG+TGG | - | chr4.4:43783832-43783851 | None:intergenic | 35.0% | |
| ATCAAAAGCTATCTGAGCTT+GGG | + | chr4.4:43784572-43784591 | MS.gene049841:CDS | 35.0% | |
| ATGAAAGGATTAGAAGTCCA+TGG | - | chr4.4:43784181-43784200 | None:intergenic | 35.0% | |
| ATTGCAAATGCGTTTCAAAC+AGG | - | chr4.4:43783273-43783292 | None:intergenic | 35.0% | |
| CAGCATATTTCTCAACAAGT+GGG | - | chr4.4:43784399-43784418 | None:intergenic | 35.0% | |
| CTACAGACAACTTTCAAAAC+AGG | - | chr4.4:43783349-43783368 | None:intergenic | 35.0% | |
| GAAATGATTAGGGAGTTGTT+GGG | + | chr4.4:43784307-43784326 | MS.gene049841:intron | 35.0% | |
| TCTCATTTGTCAATGATTGC+AGG | + | chr4.4:43784513-43784532 | MS.gene049841:intron | 35.0% | |
| TGAAAGGATTAGAAGTCCAT+GGG | - | chr4.4:43784180-43784199 | None:intergenic | 35.0% | |
| TGAAATGATTAGGGAGTTGT+TGG | + | chr4.4:43784306-43784325 | MS.gene049841:intron | 35.0% | |
| TTGCAATGCTATCTACAAGT+TGG | - | chr4.4:43783416-43783435 | None:intergenic | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | + | chr4.4:43783922-43783941 | MS.gene049841:intron | 35.0% | |
| ! | TGGATTTCATACATTTCTGG+TGG | + | chr4.4:43783387-43783406 | MS.gene049841:intron | 35.0% |
| !! | GCATTTCTAGTTATCACATG+AGG | - | chr4.4:43783451-43783470 | None:intergenic | 35.0% |
| !! | GCTAATTGGTCCTTTTGTTT+TGG | + | chr4.4:43783583-43783602 | MS.gene049841:intron | 35.0% |
| !! | TTGTTTTGTGGTTATGCAGT+TGG | + | chr4.4:43782912-43782931 | MS.gene049841:intron | 35.0% |
| !!! | TGTTGTGTTTTTTACCACAC+AGG | + | chr4.4:43784686-43784705 | MS.gene049841:intron | 35.0% |
| AAATCCAGAACACTAACCCT+TGG | - | chr4.4:43783664-43783683 | None:intergenic | 40.0% | |
| ATGTGTTTGGCAAAGCTATG+GGG | + | chr4.4:43783771-43783790 | MS.gene049841:CDS | 40.0% | |
| ATTGGGAATTGCTCCTTAAG+AGG | - | chr4.4:43782797-43782816 | None:intergenic | 40.0% | |
| CAACATGAATCAACTCCAAG+TGG | - | chr4.4:43784671-43784690 | None:intergenic | 40.0% | |
| CATATTTCTCAACAAGTGGG+CGG | - | chr4.4:43784396-43784415 | None:intergenic | 40.0% | |
| CATCAAAAGCTATCTGAGCT+TGG | + | chr4.4:43784571-43784590 | MS.gene049841:CDS | 40.0% | |
| GATGTGTTTGGCAAAGCTAT+GGG | + | chr4.4:43783770-43783789 | MS.gene049841:CDS | 40.0% | |
| GATTCAAAGACAAAGACTGG+TGG | + | chr4.4:43782689-43782708 | MS.gene049841:CDS | 40.0% | |
| GCAGCATATTTCTCAACAAG+TGG | - | chr4.4:43784400-43784419 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+TGG | - | chr4.4:43783499-43783518 | None:intergenic | 40.0% | |
| TAAGTTCCGCATTATCCACT+TGG | + | chr4.4:43784653-43784672 | MS.gene049841:intron | 40.0% | |
| TATCACTTGGCAACTGAAGA+AGG | - | chr4.4:43784348-43784367 | None:intergenic | 40.0% | |
| TCAACTCCAAGTGGATAATG+CGG | - | chr4.4:43784662-43784681 | None:intergenic | 40.0% | |
| TCTAGTTATCACATGAGGAC+AGG | - | chr4.4:43783446-43783465 | None:intergenic | 40.0% | |
| TCTTCAGTTGCCAAGTGATA+AGG | + | chr4.4:43784348-43784367 | MS.gene049841:CDS | 40.0% | |
| TTACCAAAAGGCTGTTGAGA+AGG | + | chr4.4:43782172-43782191 | MS.gene049841:CDS | 40.0% | |
| ! | AGATAGCTTTTGATGAGCCT+CGG | - | chr4.4:43784566-43784585 | None:intergenic | 40.0% |
| ! | GTTGTTGCTGTTGAGATTAC+TGG | + | chr4.4:43782940-43782959 | MS.gene049841:CDS | 40.0% |
| ! | TGATATCGCTGTTAGGCTTT+TGG | + | chr4.4:43782769-43782788 | MS.gene049841:CDS | 40.0% |
| ! | TTTCTTTGCTGATTATGCCG+AGG | + | chr4.4:43784546-43784565 | MS.gene049841:CDS | 40.0% |
| !! | CTCAAAAGTGCCTTATCACT+TGG | - | chr4.4:43784361-43784380 | None:intergenic | 40.0% |
| !! | CTTTTGGTAATCAGCACTCA+CGG | - | chr4.4:43782162-43782181 | None:intergenic | 40.0% |
| !! | GGAGGTACGTTTACTACTTT+TGG | + | chr4.4:43782993-43783012 | MS.gene049841:intron | 40.0% |
| !! | TAGCTATGCTGATTTCTACC+AGG | + | chr4.4:43782820-43782839 | MS.gene049841:CDS | 40.0% |
| ACAAAGACTGGTGGTCCTTT+CGG | + | chr4.4:43782698-43782717 | MS.gene049841:CDS | 45.0% | |
| ACGGTCTTGATATCGCTGTT+AGG | + | chr4.4:43782762-43782781 | MS.gene049841:CDS | 45.0% | |
| ATGATTAGGGAGTTGTTGGG+TGG | + | chr4.4:43784310-43784329 | MS.gene049841:intron | 45.0% | |
| CAGACAAAGCAACAATGTCC+TGG | - | chr4.4:43783805-43783824 | None:intergenic | 45.0% | |
| GACCATTTGAGGGATGTGTT+TGG | + | chr4.4:43783758-43783777 | MS.gene049841:CDS | 45.0% | |
| GGATGTGTTTGGCAAAGCTA+TGG | + | chr4.4:43783769-43783788 | MS.gene049841:CDS | 45.0% | |
| TGCCAAACACATCCCTCAAA+TGG | - | chr4.4:43783763-43783782 | None:intergenic | 45.0% | |
| TGTCTTGCAGTTCACGTTCT+TGG | + | chr4.4:43783309-43783328 | MS.gene049841:intron | 45.0% | |
| TTTGTGGTTATGCAGTTGGC+TGG | + | chr4.4:43782916-43782935 | MS.gene049841:intron | 45.0% | |
| ! | CGCTGAGATTGTGACTGTTT+TGG | + | chr4.4:43784097-43784116 | MS.gene049841:intron | 45.0% |
| ! | CTTGCTCATGGTGCTAACAA+CGG | + | chr4.4:43782743-43782762 | MS.gene049841:CDS | 45.0% |
| ! | GTTGCTGTTGAGATTACTGG+TGG | + | chr4.4:43782943-43782962 | MS.gene049841:CDS | 45.0% |
| ! | TGCAGGTTCTGACCATTTGA+GGG | + | chr4.4:43783748-43783767 | MS.gene049841:intron | 45.0% |
| ! | TTGCAGGTTCTGACCATTTG+AGG | + | chr4.4:43783747-43783766 | MS.gene049841:intron | 45.0% |
| !! | AAGGAGCGTTCTGGATTTGA+GGG | + | chr4.4:43784154-43784173 | MS.gene049841:CDS | 45.0% |
| !! | CAGGACATTGTTGCTTTGTC+TGG | + | chr4.4:43783803-43783822 | MS.gene049841:CDS | 45.0% |
| !! | CGTGAGTGCTGATTACCAAA+AGG | + | chr4.4:43782160-43782179 | MS.gene049841:CDS | 45.0% |
| !! | GACATTGTTGCTTTGTCTGG+TGG | + | chr4.4:43783806-43783825 | MS.gene049841:CDS | 45.0% |
| !!! | TAGGCTTTTGGAGCCTCTTA+AGG | + | chr4.4:43782781-43782800 | MS.gene049841:CDS | 45.0% |
| AAGTTCCTTTCCACCCTGGT+AGG | + | chr4.4:43782971-43782990 | MS.gene049841:CDS | 50.0% | |
| AGTAAACGTACCTCCCTACC+AGG | - | chr4.4:43782988-43783007 | None:intergenic | 50.0% | |
| AGTTCCTTTCCACCCTGGTA+GGG | + | chr4.4:43782972-43782991 | MS.gene049841:CDS | 50.0% | |
| CAACAAGTGGGCGGAATACA+GGG | - | chr4.4:43784387-43784406 | None:intergenic | 50.0% | |
| GGTAATCAGCACTCACGGTT+GGG | - | chr4.4:43782157-43782176 | None:intergenic | 50.0% | |
| GTAAACGTACCTCCCTACCA+GGG | - | chr4.4:43782987-43783006 | None:intergenic | 50.0% | |
| TACGCCAAACGGAGCATAAG+AGG | - | chr4.4:43782242-43782261 | None:intergenic | 50.0% | |
| TAGGCTTCTGCAAACCTGTG+TGG | - | chr4.4:43784703-43784722 | None:intergenic | 50.0% | |
| TCAACAAGTGGGCGGAATAC+AGG | - | chr4.4:43784388-43784407 | None:intergenic | 50.0% | |
| TCCAGAACACTAACCCTTGG+TGG | - | chr4.4:43783661-43783680 | None:intergenic | 50.0% | |
| TGGTAATCAGCACTCACGGT+TGG | - | chr4.4:43782158-43782177 | None:intergenic | 50.0% | |
| TTGTGTAGATGGCACTCTGC+TGG | + | chr4.4:43782659-43782678 | MS.gene049841:intron | 50.0% | |
| TTGTTGGGTGGTGAGAAGGA+AGG | + | chr4.4:43784322-43784341 | MS.gene049841:CDS | 50.0% | |
| ! | TCGCCTTCTCAACAGCCTTT+TGG | - | chr4.4:43782178-43782197 | None:intergenic | 50.0% |
| ! | TGGTGCTTGATGGTTCCGAA+AGG | - | chr4.4:43782716-43782735 | None:intergenic | 50.0% |
| !! | AAGCTCAGCTTGGTGCTTGA+TGG | - | chr4.4:43782726-43782745 | None:intergenic | 50.0% |
| !! | CAAGGAGCGTTCTGGATTTG+AGG | + | chr4.4:43784153-43784172 | MS.gene049841:CDS | 50.0% |
| AAGGCGAAGAGGAAGCTCAG+AGG | + | chr4.4:43782191-43782210 | MS.gene049841:CDS | 55.0% | |
| AGCTATGGGGCTTAGTGACC+AGG | + | chr4.4:43783784-43783803 | MS.gene049841:CDS | 55.0% | |
| AGGCTGTTGAGAAGGCGAAG+AGG | + | chr4.4:43782180-43782199 | MS.gene049841:CDS | 55.0% | |
| CACCATGAGCAAGCTCAGCT+TGG | - | chr4.4:43782736-43782755 | None:intergenic | 55.0% | |
| CCAGGGTGGAAAGGAACTTC+AGG | - | chr4.4:43782970-43782989 | None:intergenic | 55.0% | |
| CCTGAAGTTCCTTTCCACCC+TGG | + | chr4.4:43782967-43782986 | MS.gene049841:CDS | 55.0% | |
| CGCTCCTCTTATGCTCCGTT+TGG | + | chr4.4:43782235-43782254 | MS.gene049841:CDS | 55.0% | |
| GGAGTTGTTGGGTGGTGAGA+AGG | + | chr4.4:43784318-43784337 | MS.gene049841:CDS | 55.0% | |
| TTGGTAGGGAGCTGCACACA+AGG | + | chr4.4:43784135-43784154 | MS.gene049841:intron | 55.0% | |
| ! | CACCAAGCTGAGCTTGCTCA+TGG | + | chr4.4:43782731-43782750 | MS.gene049841:CDS | 55.0% |
| ! | CACTAACCCTTGGTGGCATC+AGG | - | chr4.4:43783654-43783673 | None:intergenic | 55.0% |
| ! | GCCACCAAGGGTTAGTGTTC+TGG | + | chr4.4:43783657-43783676 | MS.gene049841:intron | 55.0% |
| ! | GTTCTGGATTTGAGGGCCCA+TGG | + | chr4.4:43784161-43784180 | MS.gene049841:CDS | 55.0% |
| AACGTACCTCCCTACCAGGG+TGG | - | chr4.4:43782984-43783003 | None:intergenic | 60.0% | |
| AAGCCTGAGCCACCACCAGA+GGG | + | chr4.4:43783621-43783640 | MS.gene049841:CDS | 60.0% | |
| ACCTCCCTACCAGGGTGGAA+AGG | - | chr4.4:43782979-43782998 | None:intergenic | 60.0% | |
| CGCTTGCCTGATGCCACCAA+GGG | + | chr4.4:43783645-43783664 | MS.gene049841:CDS | 60.0% | |
| TCCTTTCCACCCTGGTAGGG+AGG | + | chr4.4:43782975-43782994 | MS.gene049841:CDS | 60.0% | |
| TCGCTTGCCTGATGCCACCA+AGG | + | chr4.4:43783644-43783663 | MS.gene049841:CDS | 60.0% | |
| !! | GCTGCACACAAGGAGCGTTC+TGG | + | chr4.4:43784145-43784164 | MS.gene049841:CDS | 60.0% |
| CAAGCCTGAGCCACCACCAG+AGG | + | chr4.4:43783620-43783639 | MS.gene049841:CDS | 65.0% | |
| GCATCAGGCAAGCGACCCTC+TGG | - | chr4.4:43783639-43783658 | None:intergenic | 65.0% | |
| TCAGGCAAGCGACCCTCTGG+TGG | - | chr4.4:43783636-43783655 | None:intergenic | 65.0% | |
| GGCAAGCGACCCTCTGGTGG+TGG | - | chr4.4:43783633-43783652 | None:intergenic | 70.0% | |
| !! | CGACCCTCTGGTGGTGGCTC+AGG | - | chr4.4:43783627-43783646 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 43782140 | 43784723 | 43782140 | ID=MS.gene049841 |
| chr4.4 | mRNA | 43782140 | 43784723 | 43782140 | ID=MS.gene049841.t1;Parent=MS.gene049841 |
| chr4.4 | exon | 43782140 | 43782258 | 43782140 | ID=MS.gene049841.t1.exon1;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43782140 | 43782258 | 43782140 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43782667 | 43782841 | 43782667 | ID=MS.gene049841.t1.exon2;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43782667 | 43782841 | 43782667 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43782931 | 43782996 | 43782931 | ID=MS.gene049841.t1.exon3;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43782931 | 43782996 | 43782931 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43783618 | 43783666 | 43783618 | ID=MS.gene049841.t1.exon4;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43783618 | 43783666 | 43783618 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43783753 | 43783838 | 43783753 | ID=MS.gene049841.t1.exon5;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43783753 | 43783838 | 43783753 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43784142 | 43784221 | 43784142 | ID=MS.gene049841.t1.exon6;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43784142 | 43784221 | 43784142 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43784318 | 43784420 | 43784318 | ID=MS.gene049841.t1.exon7;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43784318 | 43784420 | 43784318 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43784535 | 43784593 | 43784535 | ID=MS.gene049841.t1.exon8;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43784535 | 43784593 | 43784535 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| chr4.4 | exon | 43784708 | 43784723 | 43784708 | ID=MS.gene049841.t1.exon9;Parent=MS.gene049841.t1 |
| chr4.4 | CDS | 43784708 | 43784723 | 43784708 | ID=cds.MS.gene049841.t1;Parent=MS.gene049841.t1 |
| Gene Sequence |
| Protein sequence |
