Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80210.t1 | XP_003603329.1 | 94.5 | 383 | 9 | 2 | 1 | 383 | 1 | 371 | 1.30E-198 | 702.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80210.t1 | O04136 | 69.3 | 433 | 77 | 11 | 1 | 383 | 1 | 427 | 2.8e-149 | 529.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80210.t1 | G7JAE2 | 94.5 | 383 | 9 | 2 | 1 | 383 | 1 | 371 | 9.5e-199 | 702.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80210.t1 | TF | HB-KNOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene80210 | 0.806463 | 8.13E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene80210 | 0.801919 | 7.17E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene80210 | 0.806132 | 9.54E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene80210 | 0.811906 | 5.54E-51 | -1.69E-46 |
| MS.gene050991 | MS.gene80210 | -0.80677 | 7.00E-50 | -1.69E-46 |
| MS.gene051941 | MS.gene80210 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene80210 | 0.807418 | 5.10E-50 | -1.69E-46 |
| MS.gene052414 | MS.gene80210 | 0.801589 | 8.38E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene80210 | 0.805851 | 1.09E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene80210 | 0.808164 | 3.54E-50 | -1.69E-46 |
| MS.gene053421 | MS.gene80210 | -0.804632 | 1.97E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene80210 | 0.826418 | 2.74E-54 | -1.69E-46 |
| MS.gene053873 | MS.gene80210 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene054486 | MS.gene80210 | 0.816714 | 4.80E-52 | -1.69E-46 |
| MS.gene055159 | MS.gene80210 | -0.81006 | 1.39E-50 | -1.69E-46 |
| MS.gene055486 | MS.gene80210 | 0.813275 | 2.78E-51 | -1.69E-46 |
| MS.gene055629 | MS.gene80210 | 0.821943 | 3.09E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene80210 | 0.822501 | 2.29E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene80210 | 0.821573 | 3.76E-53 | -1.69E-46 |
| MS.gene05601 | MS.gene80210 | 0.809032 | 2.31E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene80210 | 0.822435 | 2.37E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene80210 | 0.832073 | 1.16E-55 | -1.69E-46 |
| MS.gene056387 | MS.gene80210 | 0.834034 | 3.79E-56 | -1.69E-46 |
| MS.gene056514 | MS.gene80210 | 0.816292 | 5.96E-52 | -1.69E-46 |
| MS.gene056647 | MS.gene80210 | -0.801486 | 8.80E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene80210 | 0.805835 | 1.10E-49 | -1.69E-46 |
| MS.gene057321 | MS.gene80210 | -0.838831 | 2.28E-57 | -1.69E-46 |
| MS.gene05787 | MS.gene80210 | 0.826307 | 2.92E-54 | -1.69E-46 |
| MS.gene058157 | MS.gene80210 | 0.843884 | 1.06E-58 | -1.69E-46 |
| MS.gene058420 | MS.gene80210 | 0.849517 | 3.07E-60 | -1.69E-46 |
| MS.gene059367 | MS.gene80210 | 0.803825 | 2.90E-49 | -1.69E-46 |
| MS.gene05995 | MS.gene80210 | 0.846845 | 1.68E-59 | -1.69E-46 |
| MS.gene05996 | MS.gene80210 | 0.834418 | 3.03E-56 | -1.69E-46 |
| MS.gene06000 | MS.gene80210 | 0.809875 | 1.52E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene80210 | -0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene80210 | 0.81772 | 2.85E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76034 | MS.gene80210 | PPI |
| MS.gene074258 | MS.gene80210 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80210.t1 | MTR_3g106400 | 96.345 | 383 | 2 | 2 | 1 | 383 | 1 | 371 | 0.0 | 761 |
| MS.gene80210.t1 | MTR_3g106400 | 96.345 | 383 | 2 | 2 | 1 | 383 | 1 | 371 | 0.0 | 760 |
| MS.gene80210.t1 | MTR_3g106400 | 96.345 | 383 | 2 | 2 | 1 | 383 | 1 | 371 | 0.0 | 760 |
| MS.gene80210.t1 | MTR_1g012960 | 66.970 | 439 | 86 | 8 | 1 | 383 | 1 | 436 | 0.0 | 557 |
| MS.gene80210.t1 | MTR_2g461240 | 66.006 | 353 | 79 | 6 | 31 | 382 | 42 | 354 | 4.17e-160 | 454 |
| MS.gene80210.t1 | MTR_4g116545 | 78.439 | 269 | 50 | 3 | 117 | 383 | 69 | 331 | 1.16e-152 | 434 |
| MS.gene80210.t1 | MTR_4g116545 | 80.078 | 256 | 43 | 3 | 117 | 370 | 69 | 318 | 1.93e-149 | 426 |
| MS.gene80210.t1 | MTR_5g011070 | 67.528 | 271 | 76 | 3 | 119 | 383 | 28 | 292 | 1.45e-128 | 372 |
| MS.gene80210.t1 | MTR_1g084060 | 35.249 | 261 | 122 | 8 | 119 | 367 | 20 | 245 | 6.69e-31 | 119 |
| MS.gene80210.t1 | MTR_1g084060 | 35.249 | 261 | 122 | 8 | 119 | 367 | 20 | 245 | 1.47e-30 | 119 |
| MS.gene80210.t1 | MTR_2g024390 | 30.400 | 250 | 143 | 4 | 119 | 367 | 118 | 337 | 2.82e-28 | 114 |
| MS.gene80210.t1 | MTR_1g017080 | 32.669 | 251 | 139 | 7 | 119 | 367 | 120 | 342 | 1.21e-25 | 107 |
| MS.gene80210.t1 | MTR_5g033720 | 32.669 | 251 | 138 | 6 | 119 | 367 | 73 | 294 | 2.79e-25 | 104 |
| MS.gene80210.t1 | MTR_5g085860 | 30.588 | 255 | 133 | 6 | 119 | 367 | 47 | 263 | 1.88e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80210.t1 | AT5G25220 | 65.217 | 437 | 80 | 12 | 1 | 383 | 1 | 419 | 0.0 | 511 |
| MS.gene80210.t1 | AT5G25220 | 65.138 | 436 | 80 | 12 | 1 | 382 | 1 | 418 | 0.0 | 509 |
| MS.gene80210.t1 | AT5G11060 | 67.476 | 412 | 74 | 12 | 1 | 382 | 1 | 382 | 7.02e-175 | 493 |
| MS.gene80210.t1 | AT4G32040 | 62.895 | 380 | 126 | 8 | 6 | 383 | 13 | 379 | 1.06e-156 | 446 |
| MS.gene80210.t1 | AT4G32040 | 62.895 | 380 | 126 | 8 | 6 | 383 | 13 | 379 | 1.07e-156 | 446 |
| MS.gene80210.t1 | AT1G62990 | 62.759 | 290 | 99 | 4 | 96 | 382 | 7 | 290 | 6.46e-127 | 367 |
| MS.gene80210.t1 | AT1G70510 | 33.077 | 260 | 137 | 8 | 112 | 367 | 63 | 289 | 8.82e-30 | 117 |
| MS.gene80210.t1 | AT1G23380 | 34.630 | 257 | 123 | 9 | 119 | 367 | 86 | 305 | 1.13e-28 | 114 |
| MS.gene80210.t1 | AT1G70510 | 31.923 | 260 | 144 | 7 | 112 | 367 | 63 | 293 | 3.22e-28 | 112 |
| MS.gene80210.t1 | AT1G23380 | 34.363 | 259 | 123 | 10 | 119 | 367 | 86 | 307 | 7.95e-27 | 109 |
| MS.gene80210.t1 | AT4G08150 | 33.205 | 259 | 130 | 8 | 119 | 367 | 135 | 360 | 7.84e-26 | 107 |
| MS.gene80210.t1 | AT1G62360 | 34.400 | 250 | 135 | 6 | 119 | 367 | 122 | 343 | 1.90e-25 | 106 |
Find 119 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATAGTATGGGAGGATT+TGG | 0.320582 | 3.4:+92805182 | MS.gene80210:CDS |
| TGCCAGCTGAGCGTCGATCC+TGG | 0.345057 | 3.4:-92802841 | None:intergenic |
| TGTACCTGTTAGACTTTGTA+AGG | 0.355039 | 3.4:-92803809 | None:intergenic |
| GTACTCTGCGTTAGGACAAC+AGG | 0.363398 | 3.4:+92802887 | MS.gene80210:CDS |
| GGATGGTTCAGATAATAGTA+TGG | 0.368115 | 3.4:+92805172 | MS.gene80210:CDS |
| CTTTCCAAACTGCACCTAAC+TGG | 0.380352 | 3.4:+92802478 | MS.gene80210:CDS |
| AATTGAAACAGATCAATAAC+TGG | 0.381851 | 3.4:+92806169 | MS.gene80210:CDS |
| GTTGTTGTTGTTCTGTGAAA+TGG | 0.389827 | 3.4:-92802428 | None:intergenic |
| TGCCTTTCAGGAAGAGGATA+AGG | 0.392331 | 3.4:+92806119 | MS.gene80210:intron |
| CAGTCCTTACAAAGTCTAAC+AGG | 0.396414 | 3.4:+92803805 | MS.gene80210:CDS |
| GAGCGTCGATCCTGGGCAAC+TGG | 0.397329 | 3.4:-92802833 | None:intergenic |
| TAAACAACTCGACCACTTCA+TGG | 0.399427 | 3.4:+92802932 | MS.gene80210:CDS |
| GAGCCATTGACCGGAGGATT+GGG | 0.403988 | 3.4:-92802601 | None:intergenic |
| GCAAGGTTGGTGCAAGAAAC+CGG | 0.410624 | 3.4:+92806141 | MS.gene80210:CDS |
| TGGTGTCGAGGTTGCGAAGA+AGG | 0.418558 | 3.4:-92802512 | None:intergenic |
| AGACGAGCTGGAAAACTTCC+TGG | 0.420513 | 3.4:+92805561 | MS.gene80210:CDS |
| AGTGATGTTAATCTGTTTGA+TGG | 0.421723 | 3.4:+92805143 | MS.gene80210:CDS |
| AGGGCGTTGTTGAGCCAGTT+AGG | 0.423606 | 3.4:-92802492 | None:intergenic |
| GAAGTCATCGACGACGTTAC+CGG | 0.424039 | 3.4:+92802654 | MS.gene80210:CDS |
| TGAGCCAGTTAGGTGCAGTT+TGG | 0.424789 | 3.4:-92802482 | None:intergenic |
| GGAAGCAGTAATGGCTTGTT+GGG | 0.426655 | 3.4:+92803774 | MS.gene80210:CDS |
| GTTCCCAATCCTCCGGTCAA+TGG | 0.427348 | 3.4:+92802598 | MS.gene80210:CDS |
| AATGGTGGAGTGGGTTGTCT+TGG | 0.431285 | 3.4:-92802410 | None:intergenic |
| TGGAAGCAGTAATGGCTTGT+TGG | 0.435199 | 3.4:+92803773 | MS.gene80210:CDS |
| ATCCTGGGCAACTGGTCAAC+CGG | 0.438877 | 3.4:-92802825 | None:intergenic |
| TCAATCAAAGGAAGAGGAAC+TGG | 0.439251 | 3.4:+92806196 | MS.gene80210:CDS |
| GAAGTTGGTACTGTTGTTGT+TGG | 0.439599 | 3.4:-92802556 | None:intergenic |
| GCCCAGGATCGACGCTCAGC+TGG | 0.442737 | 3.4:+92802839 | MS.gene80210:CDS |
| GAAACACAAAGGTGAAATAA+TGG | 0.443665 | 3.4:+92802743 | MS.gene80210:CDS |
| TAATCTGTTTGATGGAGGTT+TGG | 0.446200 | 3.4:+92805151 | MS.gene80210:CDS |
| AGAGCCATTGACCGGAGGAT+TGG | 0.446472 | 3.4:-92802602 | None:intergenic |
| GCCAGCTGAGCGTCGATCCT+GGG | 0.452139 | 3.4:-92802840 | None:intergenic |
| GGTACTGTTGTTGTTGGTTG+TGG | 0.453246 | 3.4:-92802550 | None:intergenic |
| ATTAAAGCATGAGTTGAAAC+AGG | 0.455099 | 3.4:+92805259 | MS.gene80210:CDS |
| ATAGAAGCTGTTCATACAAC+GGG | 0.456842 | 3.4:-92802770 | None:intergenic |
| TTGTCCTAACGCAGAGTACT+TGG | 0.459203 | 3.4:-92802883 | None:intergenic |
| AACCGGCGGTGTCGAGGTTG+AGG | 0.460908 | 3.4:-92802578 | None:intergenic |
| CAGCGGAGGGAGTGATGAAC+TGG | 0.464161 | 3.4:+92802712 | MS.gene80210:CDS |
| CGCCGGTTGACCAGTTGCCC+AGG | 0.465203 | 3.4:+92802823 | MS.gene80210:CDS |
| CAACCTCAGTACTTAAAGAT+TGG | 0.466078 | 3.4:+92805589 | MS.gene80210:CDS |
| TTCAACGCATTAGAAGTTGA+AGG | 0.469895 | 3.4:-92806228 | None:intergenic |
| GTTGTTGTTGGTTGTGGCGG+TGG | 0.469972 | 3.4:-92802544 | None:intergenic |
| CCATGCAATGGAAGCAGTAA+TGG | 0.471444 | 3.4:+92803765 | MS.gene80210:CDS |
| GTTGCTCCTGTACCTTCCCC+TGG | 0.471752 | 3.4:-92805089 | None:intergenic |
| CTGTTTGATGGAGGTTTGGA+TGG | 0.472583 | 3.4:+92805155 | MS.gene80210:CDS |
| CATGGACTCGGACATGTTGT+TGG | 0.486135 | 3.4:-92803747 | None:intergenic |
| AGAGTTCTTACAGTAGGATA+AGG | 0.489180 | 3.4:-92805633 | None:intergenic |
| CGTTACCGGCGCTGGTATGA+AGG | 0.491895 | 3.4:+92802668 | MS.gene80210:CDS |
| GTTGCCAAGTACTCTGCGTT+AGG | 0.491986 | 3.4:+92802879 | MS.gene80210:CDS |
| GTTTCACCAGGGGAAGGTAC+AGG | 0.498577 | 3.4:+92805083 | MS.gene80210:CDS |
| AGTACTGAGGTTGTGTCACC+AGG | 0.501554 | 3.4:-92805579 | None:intergenic |
| CCATTACTGCTTCCATTGCA+TGG | 0.504180 | 3.4:-92803765 | None:intergenic |
| AGGACGGGAGAGCCATTGAC+CGG | 0.509843 | 3.4:-92802610 | None:intergenic |
| CTGTGGTTTCGATGGAGGAC+AGG | 0.510607 | 3.4:-92802630 | None:intergenic |
| GTTCTGTGAAATGGTGGAGT+GGG | 0.511127 | 3.4:-92802419 | None:intergenic |
| AAGCGGTGAGGCAACAGCGG+AGG | 0.511964 | 3.4:+92802698 | MS.gene80210:CDS |
| CTGCTTCCATTGCATGGACT+CGG | 0.514678 | 3.4:-92803759 | None:intergenic |
| TTGACCGGAGGATTGGGAAC+CGG | 0.515320 | 3.4:-92802595 | None:intergenic |
| TGTTGCCTCACCGCTTTCCT+CGG | 0.515416 | 3.4:-92802691 | None:intergenic |
| TGACTTCGCTGTGGTTTCGA+TGG | 0.516848 | 3.4:-92802638 | None:intergenic |
| TCATTCTCTGTTAGAACAAG+AGG | 0.524064 | 3.4:-92805206 | None:intergenic |
| GGTGTCGAGGTTGCGAAGAA+GGG | 0.525959 | 3.4:-92802511 | None:intergenic |
| GAAAATTGTGGACATAAGAG+AGG | 0.527462 | 3.4:+92805524 | MS.gene80210:CDS |
| GGTGTCGAGGTTGAGGAAGT+TGG | 0.532035 | 3.4:-92802571 | None:intergenic |
| ATTGGGAACCGGCGGTGTCG+AGG | 0.533014 | 3.4:-92802584 | None:intergenic |
| GATGGTTCAGATAATAGTAT+GGG | 0.538925 | 3.4:+92805173 | MS.gene80210:CDS |
| CGTTGAAGAGCAAGCGCAAG+AGG | 0.539470 | 3.4:+92806244 | MS.gene80210:CDS |
| GGAAGAGGATAAGGCAAGGT+TGG | 0.540633 | 3.4:+92806128 | MS.gene80210:intron |
| GTTGTTGTTCTGTGAAATGG+TGG | 0.541053 | 3.4:-92802425 | None:intergenic |
| GAGTGGTGAGGATCGGAGGT+TGG | 0.542790 | 3.4:-92802456 | None:intergenic |
| CTTCGCTGTGGTTTCGATGG+AGG | 0.543312 | 3.4:-92802635 | None:intergenic |
| CTCGGCCTTCATACCAGCGC+CGG | 0.547542 | 3.4:-92802673 | None:intergenic |
| CCTCAGTACTTAAAGATTGG+TGG | 0.548243 | 3.4:+92805592 | MS.gene80210:CDS |
| GTTTCGATGGAGGACAGGAC+GGG | 0.549706 | 3.4:-92802625 | None:intergenic |
| GAAAGAGTGGTGAGGATCGG+AGG | 0.551627 | 3.4:-92802460 | None:intergenic |
| ATCGACGACGTTACCGGCGC+TGG | 0.558499 | 3.4:+92802660 | MS.gene80210:CDS |
| AGCGGTGAGGCAACAGCGGA+GGG | 0.559972 | 3.4:+92802699 | MS.gene80210:CDS |
| AGAGAATGAGAGGTCCCTCA+TGG | 0.567340 | 3.4:+92805220 | MS.gene80210:CDS |
| ATAACTGGTTTATCAATCAA+AGG | 0.567448 | 3.4:+92806184 | MS.gene80210:CDS |
| TGTTCTGTGAAATGGTGGAG+TGG | 0.567991 | 3.4:-92802420 | None:intergenic |
| CAAGGTTGGTGCAAGAAACC+GGG | 0.570646 | 3.4:+92806142 | MS.gene80210:CDS |
| ACCGCCGGTTCCCAATCCTC+CGG | 0.570735 | 3.4:+92802591 | MS.gene80210:CDS |
| TTCCTCAACCTCGACACCGC+CGG | 0.572536 | 3.4:+92802576 | MS.gene80210:CDS |
| CGGCGCTGGTATGAAGGCCG+AGG | 0.574579 | 3.4:+92802674 | MS.gene80210:CDS |
| GGTTTATCAATCAAAGGAAG+AGG | 0.579093 | 3.4:+92806190 | MS.gene80210:CDS |
| TTGGAAAGAGTGGTGAGGAT+CGG | 0.583594 | 3.4:-92802463 | None:intergenic |
| CCACCAATCTTTAAGTACTG+AGG | 0.588799 | 3.4:-92805592 | None:intergenic |
| GGTTTCGATGGAGGACAGGA+CGG | 0.592132 | 3.4:-92802626 | None:intergenic |
| AAAGGTAAAATACCATGAAG+TGG | 0.598924 | 3.4:-92802944 | None:intergenic |
| TAGGTGCAGTTTGGAAAGAG+TGG | 0.600373 | 3.4:-92802473 | None:intergenic |
| TGGCGTTGACGTTGGTGTCG+AGG | 0.601937 | 3.4:-92802524 | None:intergenic |
| GGGTTATAAAGAGAAAATTG+TGG | 0.610746 | 3.4:+92805512 | MS.gene80210:intron |
| TTGTTCTAACAGAGAATGAG+AGG | 0.611125 | 3.4:+92805210 | MS.gene80210:CDS |
| TGTGGCGGTGGCGTTGACGT+TGG | 0.611369 | 3.4:-92802532 | None:intergenic |
| GGTTCAGATAATAGTATGGG+AGG | 0.618510 | 3.4:+92805176 | MS.gene80210:CDS |
| GATGTTAATCTGTTTGATGG+AGG | 0.621633 | 3.4:+92805146 | MS.gene80210:CDS |
| TGTGTAACAGGAGTTTCACC+AGG | 0.621894 | 3.4:+92805071 | MS.gene80210:intron |
| GATCTGTTTCAATTGCAACC+CGG | 0.623157 | 3.4:-92806160 | None:intergenic |
| ACCGGAGGATTGGGAACCGG+CGG | 0.625286 | 3.4:-92802592 | None:intergenic |
| GGAAAGCGGTGAGGCAACAG+CGG | 0.626255 | 3.4:+92802695 | MS.gene80210:CDS |
| GGGCAACTGGTCAACCGGCG+TGG | 0.628223 | 3.4:-92802820 | None:intergenic |
| ATGTCTTACACGTTCCATGA+GGG | 0.635061 | 3.4:-92805234 | None:intergenic |
| ACAGGAGTTTCACCAGGGGA+AGG | 0.636992 | 3.4:+92805077 | MS.gene80210:intron |
| ACATGTCCGAGTCCATGCAA+TGG | 0.642083 | 3.4:+92803753 | MS.gene80210:CDS |
| ACTGTTGTTGTTGGTTGTGG+CGG | 0.642777 | 3.4:-92802547 | None:intergenic |
| CATGTCTTACACGTTCCATG+AGG | 0.645094 | 3.4:-92805235 | None:intergenic |
| GATAGAAGCTGTTCATACAA+CGG | 0.647941 | 3.4:-92802771 | None:intergenic |
| TACTCTGCGTTAGGACAACA+GGG | 0.650241 | 3.4:+92802888 | MS.gene80210:CDS |
| GGTATGAAGGCCGAGGAAAG+CGG | 0.652275 | 3.4:+92802681 | MS.gene80210:CDS |
| ACGGGAGAGCCATTGACCGG+AGG | 0.652694 | 3.4:-92802607 | None:intergenic |
| GTGTTTGAGAATCGCCACGC+CGG | 0.654940 | 3.4:+92802806 | MS.gene80210:CDS |
| TTCAGGAAGAGGATAAGGCA+AGG | 0.655439 | 3.4:+92806124 | MS.gene80210:intron |
| GGTGGCAATCACATTCAAAG+TGG | 0.680210 | 3.4:+92805610 | MS.gene80210:CDS |
| CGTCGTCGATGACTTCGCTG+TGG | 0.682559 | 3.4:-92802647 | None:intergenic |
| TGGCAGAAAGCGAAACACAA+AGG | 0.682726 | 3.4:+92802732 | MS.gene80210:CDS |
| GCAGTTTGGAAAGAGTGGTG+AGG | 0.695329 | 3.4:-92802468 | None:intergenic |
| GTGTAACAGGAGTTTCACCA+GGG | 0.706920 | 3.4:+92805072 | MS.gene80210:intron |
| GAAGGCCGAGGAAAGCGGTG+AGG | 0.708487 | 3.4:+92802686 | MS.gene80210:CDS |
| TGTAACAGGAGTTTCACCAG+GGG | 0.775474 | 3.4:+92805073 | MS.gene80210:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAATAATGATTAGT+GGG | - | chr3.4:92806077-92806096 | None:intergenic | 10.0% |
| !!! | AATTACAATATTTTTTTGTA+TGG | + | chr3.4:92803448-92803467 | MS.gene80210:intron | 10.0% |
| !! | AATGATAATTAAGATCTTAA+TGG | + | chr3.4:92804156-92804175 | MS.gene80210:intron | 15.0% |
| !! | AATTTATTAGTAAGATAGAA+TGG | + | chr3.4:92804801-92804820 | MS.gene80210:intron | 15.0% |
| !! | CTAAAAATAATAATGATTAG+TGG | - | chr3.4:92806078-92806097 | None:intergenic | 15.0% |
| !! | CTAATAAATTATTCATTATG+TGG | - | chr3.4:92804791-92804810 | None:intergenic | 15.0% |
| !! | TTTGTAAATATTATTGAGAA+AGG | - | chr3.4:92802965-92802984 | None:intergenic | 15.0% |
| !!! | AAGTTTTTATAGGAAAAAAT+AGG | + | chr3.4:92803963-92803982 | MS.gene80210:intron | 15.0% |
| !!! | AATTTTCTGCAATAATATTT+TGG | + | chr3.4:92803504-92803523 | MS.gene80210:intron | 15.0% |
| !!! | ATTTATACTTTTCTCAATAT+AGG | + | chr3.4:92804057-92804076 | MS.gene80210:intron | 15.0% |
| !!! | TATTTTTTATTTTTTTGTCG+TGG | + | chr3.4:92803582-92803601 | MS.gene80210:intron | 15.0% |
| !! | AAAATAATTAAGGTAGCTAA+TGG | + | chr3.4:92803277-92803296 | MS.gene80210:intron | 20.0% |
| !! | AAATAACATGCTAAAAAGTA+AGG | - | chr3.4:92804914-92804933 | None:intergenic | 20.0% |
| !! | AATTAGTACTCATATCTAAT+GGG | - | chr3.4:92805030-92805049 | None:intergenic | 20.0% |
| !! | ATTATTCATTATGTGGTTTA+AGG | - | chr3.4:92804784-92804803 | None:intergenic | 20.0% |
| !! | GATTACATTAAATGTTGAAT+AGG | + | chr3.4:92805295-92805314 | MS.gene80210:intron | 20.0% |
| !! | TAAATTATTCATGACGTATT+TGG | - | chr3.4:92804315-92804334 | None:intergenic | 20.0% |
| !! | TAATTAGTACTCATATCTAA+TGG | - | chr3.4:92805031-92805050 | None:intergenic | 20.0% |
| !! | TATGTTAAAATAAGCTCAAA+AGG | - | chr3.4:92803344-92803363 | None:intergenic | 20.0% |
| !! | TTCTCAATATAGGAATTATA+CGG | + | chr3.4:92804067-92804086 | MS.gene80210:intron | 20.0% |
| !!! | ACTTATTTCTAATTCAAGAT+CGG | - | chr3.4:92806328-92806347 | None:intergenic | 20.0% |
| !!! | AGAATTTATTTTCTGTTGTA+TGG | + | chr3.4:92803648-92803667 | MS.gene80210:intron | 20.0% |
| !!! | CATATTGATTAATATCCAAT+TGG | - | chr3.4:92804584-92804603 | None:intergenic | 20.0% |
| !!! | GCAAAACTTAAATTTTAACT+CGG | + | chr3.4:92803114-92803133 | MS.gene80210:intron | 20.0% |
| !!! | GCAAATTTAAGATTATGAAA+AGG | - | chr3.4:92806293-92806312 | None:intergenic | 20.0% |
| !!! | TACAATATTTTTTTGTATGG+TGG | + | chr3.4:92803451-92803470 | MS.gene80210:intron | 20.0% |
| ! | AAAACATAATTACACTCCAT+TGG | - | chr3.4:92803563-92803582 | None:intergenic | 25.0% |
| ! | AAAGTCCAAACAATTCATAT+GGG | - | chr3.4:92804708-92804727 | None:intergenic | 25.0% |
| ! | AACATCATAGTTATACTGTA+TGG | + | chr3.4:92804854-92804873 | MS.gene80210:intron | 25.0% |
| ! | AACATTTAATGTAATCCATG+AGG | - | chr3.4:92805291-92805310 | None:intergenic | 25.0% |
| ! | AAGCTATCTTAGATATCTTA+CGG | + | chr3.4:92805921-92805940 | MS.gene80210:intron | 25.0% |
| ! | AATTCTGTCAAAAAAAAGCA+AGG | - | chr3.4:92804889-92804908 | None:intergenic | 25.0% |
| ! | AATTGAAACAGATCAATAAC+TGG | + | chr3.4:92806169-92806188 | MS.gene80210:CDS | 25.0% |
| ! | ACAATTCTGTCAAAAAAACA+AGG | - | chr3.4:92804462-92804481 | None:intergenic | 25.0% |
| ! | AGGAATAAGCAACAAAAATT+TGG | - | chr3.4:92803923-92803942 | None:intergenic | 25.0% |
| ! | ATATGAATTGTTTGGACTTT+GGG | + | chr3.4:92804708-92804727 | MS.gene80210:intron | 25.0% |
| ! | CATTAAATGTTGAATAGGAA+AGG | + | chr3.4:92805300-92805319 | MS.gene80210:intron | 25.0% |
| ! | CATTCGTGTAATTTATCTTT+AGG | - | chr3.4:92803943-92803962 | None:intergenic | 25.0% |
| ! | CCTGTACATATGAATTATTT+GGG | + | chr3.4:92804230-92804249 | MS.gene80210:intron | 25.0% |
| ! | GAATTAGAAATAAGTAATGC+AGG | + | chr3.4:92806333-92806352 | MS.gene80210:intron | 25.0% |
| ! | GCTTGTAAGAAAATTTGAAA+AGG | - | chr3.4:92804108-92804127 | None:intergenic | 25.0% |
| ! | GTATCTATATTCAAAGTACA+TGG | - | chr3.4:92804947-92804966 | None:intergenic | 25.0% |
| ! | TAAATATTTGAGAACCTGAT+TGG | - | chr3.4:92805976-92805995 | None:intergenic | 25.0% |
| ! | TCCTGTACATATGAATTATT+TGG | + | chr3.4:92804229-92804248 | MS.gene80210:intron | 25.0% |
| ! | TCTCAATATAGGAATTATAC+GGG | + | chr3.4:92804068-92804087 | MS.gene80210:intron | 25.0% |
| ! | TGTAAGAAAATTTGAAAAGG+AGG | - | chr3.4:92804105-92804124 | None:intergenic | 25.0% |
| ! | TTTCAGATTCAAAACATACT+TGG | + | chr3.4:92805691-92805710 | MS.gene80210:intron | 25.0% |
| !! | AACATTTTATAGATCCAATC+AGG | + | chr3.4:92805959-92805978 | MS.gene80210:intron | 25.0% |
| !! | ACATATGAATTATTTGGGTT+AGG | + | chr3.4:92804235-92804254 | MS.gene80210:intron | 25.0% |
| !! | ACTGAAAATAAGTCTAAAGT+AGG | + | chr3.4:92803234-92803253 | MS.gene80210:intron | 25.0% |
| !! | ATAACTGGTTTATCAATCAA+AGG | + | chr3.4:92806184-92806203 | MS.gene80210:CDS | 25.0% |
| !! | CATATGAATTATTTGGGTTA+GGG | + | chr3.4:92804236-92804255 | MS.gene80210:intron | 25.0% |
| !! | TACACGAATGAAGTTTTTAT+AGG | + | chr3.4:92803953-92803972 | MS.gene80210:intron | 25.0% |
| !! | TATTTTCTGTTGTATGGTTA+CGG | + | chr3.4:92803654-92803673 | MS.gene80210:intron | 25.0% |
| !!! | AACATGTGAACTATTTTGAA+TGG | - | chr3.4:92806024-92806043 | None:intergenic | 25.0% |
| !!! | CAATTTCACTTTTGCAAAAA+AGG | - | chr3.4:92803159-92803178 | None:intergenic | 25.0% |
| !!! | GTATGTTTTGAATCTGAAAA+AGG | - | chr3.4:92805690-92805709 | None:intergenic | 25.0% |
| !!! | TTTCTGCAATAATATTTTGG+CGG | + | chr3.4:92803507-92803526 | MS.gene80210:intron | 25.0% |
| AAAAAAAAGCAAGGACAACT+GGG | - | chr3.4:92804880-92804899 | None:intergenic | 30.0% | |
| AAAGGTAAAATACCATGAAG+TGG | - | chr3.4:92802947-92802966 | None:intergenic | 30.0% | |
| AAATTTGTGTCTACAGTAAC+TGG | - | chr3.4:92803617-92803636 | None:intergenic | 30.0% | |
| AAGTGAAATTGAAACATGCA+CGG | + | chr3.4:92803168-92803187 | MS.gene80210:intron | 30.0% | |
| ACAAGTTAGCTAATCTTTCT+TGG | - | chr3.4:92804524-92804543 | None:intergenic | 30.0% | |
| AGTAATAATCAAGCCCTTAA+TGG | + | chr3.4:92804630-92804649 | MS.gene80210:intron | 30.0% | |
| AGTCATTCATGCATAGTAAT+AGG | - | chr3.4:92803217-92803236 | None:intergenic | 30.0% | |
| AGTGATGTTAATCTGTTTGA+TGG | + | chr3.4:92805143-92805162 | MS.gene80210:CDS | 30.0% | |
| ATTCAAAGTACATGGTAGTT+TGG | - | chr3.4:92804939-92804958 | None:intergenic | 30.0% | |
| ATTCATGACGTATTTGGTAT+AGG | - | chr3.4:92804309-92804328 | None:intergenic | 30.0% | |
| CAAAGTCCAAACAATTCATA+TGG | - | chr3.4:92804709-92804728 | None:intergenic | 30.0% | |
| CAATATAGAGTTCTTACAGT+AGG | - | chr3.4:92805642-92805661 | None:intergenic | 30.0% | |
| CATATGAATTGTTTGGACTT+TGG | + | chr3.4:92804707-92804726 | MS.gene80210:intron | 30.0% | |
| CCCAAATAATTCATATGTAC+AGG | - | chr3.4:92804233-92804252 | None:intergenic | 30.0% | |
| CTCAATATAGGAATTATACG+GGG | + | chr3.4:92804069-92804088 | MS.gene80210:intron | 30.0% | |
| CTTTGACTATCAACCATTAA+GGG | - | chr3.4:92804172-92804191 | None:intergenic | 30.0% | |
| GAAACACAAAGGTGAAATAA+TGG | + | chr3.4:92802743-92802762 | MS.gene80210:CDS | 30.0% | |
| GATGGTTCAGATAATAGTAT+GGG | + | chr3.4:92805173-92805192 | MS.gene80210:CDS | 30.0% | |
| GGGTTATAAAGAGAAAATTG+TGG | + | chr3.4:92805512-92805531 | MS.gene80210:intron | 30.0% | |
| GTCATTCATGCATAGTAATA+GGG | - | chr3.4:92803216-92803235 | None:intergenic | 30.0% | |
| TAATTCATATGTACAGGACA+AGG | - | chr3.4:92804227-92804246 | None:intergenic | 30.0% | |
| TATACATAAATCCTTGCCAA+TGG | + | chr3.4:92803544-92803563 | MS.gene80210:intron | 30.0% | |
| TCAAAAAAACAAGGACAACT+GGG | - | chr3.4:92804453-92804472 | None:intergenic | 30.0% | |
| TGTGTTGAAACTTGAAATGA+TGG | - | chr3.4:92805367-92805386 | None:intergenic | 30.0% | |
| ! | ATTAAAGCATGAGTTGAAAC+AGG | + | chr3.4:92805259-92805278 | MS.gene80210:CDS | 30.0% |
| ! | GTTACTGTAGACACAAATTT+TGG | + | chr3.4:92803617-92803636 | MS.gene80210:intron | 30.0% |
| ! | TGTCAATTAATGGATGGAAA+TGG | + | chr3.4:92803030-92803049 | MS.gene80210:intron | 30.0% |
| ! | TTAATGGATGGAAATGGATT+TGG | + | chr3.4:92803036-92803055 | MS.gene80210:intron | 30.0% |
| ! | TTTCTTGGTGGATAATAGTT+TGG | - | chr3.4:92804509-92804528 | None:intergenic | 30.0% |
| !! | TTAATGGTTGATAGTCAAAG+AGG | + | chr3.4:92804172-92804191 | MS.gene80210:intron | 30.0% |
| !!! | CATACATCACTTTTTCCAAT+TGG | + | chr3.4:92804566-92804585 | MS.gene80210:intron | 30.0% |
| !!! | CCTTTTGAGCTTATTTTAAC+CGG | + | chr3.4:92803341-92803360 | MS.gene80210:intron | 30.0% |
| AAGCTTTGCGTGTCAATTAA+TGG | + | chr3.4:92803020-92803039 | MS.gene80210:intron | 35.0% | |
| AGAGTTCTTACAGTAGGATA+AGG | - | chr3.4:92805636-92805655 | None:intergenic | 35.0% | |
| AGTTAGCTAATCTTTCTTGG+TGG | - | chr3.4:92804521-92804540 | None:intergenic | 35.0% | |
| ATAATAACATGCTACGAGCA+AGG | - | chr3.4:92804485-92804504 | None:intergenic | 35.0% | |
| ATAATTACACTCCATTGGCA+AGG | - | chr3.4:92803558-92803577 | None:intergenic | 35.0% | |
| ATAGAAGCTGTTCATACAAC+GGG | - | chr3.4:92802773-92802792 | None:intergenic | 35.0% | |
| CAAAAAAAAGCAAGGACAAC+TGG | - | chr3.4:92804881-92804900 | None:intergenic | 35.0% | |
| CAAACAATTCATATGGGACA+AGG | - | chr3.4:92804702-92804721 | None:intergenic | 35.0% | |
| CAACCTCAGTACTTAAAGAT+TGG | + | chr3.4:92805589-92805608 | MS.gene80210:CDS | 35.0% | |
| CATGTTAAGATAGGCTCAAA+AGG | - | chr3.4:92803314-92803333 | None:intergenic | 35.0% | |
| CCATTCTCTAATACACGTTT+CGG | - | chr3.4:92805474-92805493 | None:intergenic | 35.0% | |
| CCGGTTAAAATAAGCTCAAA+AGG | - | chr3.4:92803374-92803393 | None:intergenic | 35.0% | |
| CCTTTGACTATCAACCATTA+AGG | - | chr3.4:92804647-92804666 | None:intergenic | 35.0% | |
| CGAAACGTGTATTAGAGAAT+GGG | + | chr3.4:92805472-92805491 | MS.gene80210:intron | 35.0% | |
| CTTGTCCCATATGAATTGTT+TGG | + | chr3.4:92804700-92804719 | MS.gene80210:intron | 35.0% | |
| GAAAATTGTGGACATAAGAG+AGG | + | chr3.4:92805524-92805543 | MS.gene80210:CDS | 35.0% | |
| GATAATAGTATGGGAGGATT+TGG | + | chr3.4:92805182-92805201 | MS.gene80210:CDS | 35.0% | |
| GATAGAAGCTGTTCATACAA+CGG | - | chr3.4:92802774-92802793 | None:intergenic | 35.0% | |
| GATGTTAATCTGTTTGATGG+AGG | + | chr3.4:92805146-92805165 | MS.gene80210:CDS | 35.0% | |
| GCTGTTATAGCTATACTGTA+TGG | + | chr3.4:92804427-92804446 | MS.gene80210:intron | 35.0% | |
| GGATGGTTCAGATAATAGTA+TGG | + | chr3.4:92805172-92805191 | MS.gene80210:CDS | 35.0% | |
| GGTCAAGTTCATGTTAAGAT+AGG | - | chr3.4:92803323-92803342 | None:intergenic | 35.0% | |
| GGTTTATCAATCAAAGGAAG+AGG | + | chr3.4:92806190-92806209 | MS.gene80210:CDS | 35.0% | |
| GTCAAAAAAACAAGGACAAC+TGG | - | chr3.4:92804454-92804473 | None:intergenic | 35.0% | |
| TAATCTGTTTGATGGAGGTT+TGG | + | chr3.4:92805151-92805170 | MS.gene80210:CDS | 35.0% | |
| TCATGCATAGTAATAGGGAA+AGG | - | chr3.4:92803211-92803230 | None:intergenic | 35.0% | |
| TCATTCTCTGTTAGAACAAG+AGG | - | chr3.4:92805209-92805228 | None:intergenic | 35.0% | |
| TGTACCTGTTAGACTTTGTA+AGG | - | chr3.4:92803812-92803831 | None:intergenic | 35.0% | |
| TTAACCGGCATGTTTATGTA+GGG | + | chr3.4:92803386-92803405 | MS.gene80210:intron | 35.0% | |
| TTCAACGCATTAGAAGTTGA+AGG | - | chr3.4:92806231-92806250 | None:intergenic | 35.0% | |
| TTGTTCTAACAGAGAATGAG+AGG | + | chr3.4:92805210-92805229 | MS.gene80210:CDS | 35.0% | |
| TTTAACCGGCATGTTTATGT+AGG | + | chr3.4:92803385-92803404 | MS.gene80210:intron | 35.0% | |
| TTTATCTCCACATGTGTAAC+AGG | + | chr3.4:92805059-92805078 | MS.gene80210:intron | 35.0% | |
| TTTATGTATAGAAGCTCGCA+TGG | - | chr3.4:92803534-92803553 | None:intergenic | 35.0% | |
| TTTGCGTGTCAATTAATGGA+TGG | + | chr3.4:92803024-92803043 | MS.gene80210:intron | 35.0% | |
| ! | AATTGTTTGGACTTTGGGTT+AGG | + | chr3.4:92804713-92804732 | MS.gene80210:intron | 35.0% |
| ! | ATTGTTTGGACTTTGGGTTA+GGG | + | chr3.4:92804714-92804733 | MS.gene80210:intron | 35.0% |
| ! | GTATGTTTTCGGTTCAGTAT+AGG | + | chr3.4:92804008-92804027 | MS.gene80210:intron | 35.0% |
| ! | GTTGTTGTTGTTCTGTGAAA+TGG | - | chr3.4:92802431-92802450 | None:intergenic | 35.0% |
| ! | TGGAAAATTTTCTCTCTCTC+TGG | + | chr3.4:92803056-92803075 | MS.gene80210:intron | 35.0% |
| !! | CCTTAATGGTTGATAGTCAA+AGG | + | chr3.4:92804644-92804663 | MS.gene80210:intron | 35.0% |
| !! | TAATGGTTGATAGTCAAAGG+AGG | + | chr3.4:92804647-92804666 | MS.gene80210:intron | 35.0% |
| !!! | GGGTTGCTCTTATTTTTGTA+GGG | + | chr3.4:92805492-92805511 | MS.gene80210:intron | 35.0% |
| !!! | TGGGTTGCTCTTATTTTTGT+AGG | + | chr3.4:92805491-92805510 | MS.gene80210:intron | 35.0% |
| AACTCCCTACATAAACATGC+CGG | - | chr3.4:92803393-92803412 | None:intergenic | 40.0% | |
| ACTGAACCGAAAACATACTG+CGG | - | chr3.4:92804006-92804025 | None:intergenic | 40.0% | |
| ATGTCTTACACGTTCCATGA+GGG | - | chr3.4:92805237-92805256 | None:intergenic | 40.0% | |
| CAATTCATATGGGACAAGGA+AGG | - | chr3.4:92804698-92804717 | None:intergenic | 40.0% | |
| CAGTCCTTACAAAGTCTAAC+AGG | + | chr3.4:92803805-92803824 | MS.gene80210:CDS | 40.0% | |
| CCGAAACGTGTATTAGAGAA+TGG | + | chr3.4:92805471-92805490 | MS.gene80210:intron | 40.0% | |
| CCTCAGTACTTAAAGATTGG+TGG | + | chr3.4:92805592-92805611 | MS.gene80210:CDS | 40.0% | |
| GATATGTGTTTGTGCCTTTC+AGG | + | chr3.4:92806107-92806126 | MS.gene80210:intron | 40.0% | |
| GATCTGTTTCAATTGCAACC+CGG | - | chr3.4:92806163-92806182 | None:intergenic | 40.0% | |
| GCTTGATCATAGACAAGCAA+GGG | - | chr3.4:92805790-92805809 | None:intergenic | 40.0% | |
| GGTTCAGATAATAGTATGGG+AGG | + | chr3.4:92805176-92805195 | MS.gene80210:CDS | 40.0% | |
| TAAACAACTCGACCACTTCA+TGG | + | chr3.4:92802932-92802951 | MS.gene80210:CDS | 40.0% | |
| TATCCCAATATGAGACCCTA+TGG | - | chr3.4:92804034-92804053 | None:intergenic | 40.0% | |
| TCAAAGAGGAACATGACTAC+AGG | + | chr3.4:92804186-92804205 | MS.gene80210:intron | 40.0% | |
| TCAATCAAAGGAAGAGGAAC+TGG | + | chr3.4:92806196-92806215 | MS.gene80210:CDS | 40.0% | |
| TGAAACTCCTGTTACACATG+TGG | - | chr3.4:92805069-92805088 | None:intergenic | 40.0% | |
| TGATAGTCAAAGGAGGAACA+TGG | + | chr3.4:92804654-92804673 | MS.gene80210:intron | 40.0% | |
| TGCTTGATCATAGACAAGCA+AGG | - | chr3.4:92805791-92805810 | None:intergenic | 40.0% | |
| ! | AGCATGAGTTGAAACAGGTA+CGG | + | chr3.4:92805264-92805283 | MS.gene80210:intron | 40.0% |
| ! | CCACCAATCTTTAAGTACTG+AGG | - | chr3.4:92805595-92805614 | None:intergenic | 40.0% |
| ! | GTTGTTGTTCTGTGAAATGG+TGG | - | chr3.4:92802428-92802447 | None:intergenic | 40.0% |
| !! | GAAGTTGGTACTGTTGTTGT+TGG | - | chr3.4:92802559-92802578 | None:intergenic | 40.0% |
| AGGCCATAGGGTCTCATATT+GGG | + | chr3.4:92804028-92804047 | MS.gene80210:intron | 45.0% | |
| CATGTCTTACACGTTCCATG+AGG | - | chr3.4:92805238-92805257 | None:intergenic | 45.0% | |
| CCATGCAATGGAAGCAGTAA+TGG | + | chr3.4:92803765-92803784 | MS.gene80210:CDS | 45.0% | |
| CCATTACTGCTTCCATTGCA+TGG | - | chr3.4:92803768-92803787 | None:intergenic | 45.0% | |
| CTGTTTGATGGAGGTTTGGA+TGG | + | chr3.4:92805155-92805174 | MS.gene80210:CDS | 45.0% | |
| CTTTCCAAACTGCACCTAAC+TGG | + | chr3.4:92802478-92802497 | MS.gene80210:CDS | 45.0% | |
| GGTGGCAATCACATTCAAAG+TGG | + | chr3.4:92805610-92805629 | MS.gene80210:CDS | 45.0% | |
| GTGTAACAGGAGTTTCACCA+GGG | + | chr3.4:92805072-92805091 | MS.gene80210:intron | 45.0% | |
| TACTCTGCGTTAGGACAACA+GGG | + | chr3.4:92802888-92802907 | MS.gene80210:CDS | 45.0% | |
| TAGGCCATAGGGTCTCATAT+TGG | + | chr3.4:92804027-92804046 | MS.gene80210:intron | 45.0% | |
| TAGGTGCAGTTTGGAAAGAG+TGG | - | chr3.4:92802476-92802495 | None:intergenic | 45.0% | |
| TCGGTTCAGTATAGGCCATA+GGG | + | chr3.4:92804016-92804035 | MS.gene80210:intron | 45.0% | |
| TGCCTTATCCTCTTCCTGAA+AGG | - | chr3.4:92806124-92806143 | None:intergenic | 45.0% | |
| TGCCTTTCAGGAAGAGGATA+AGG | + | chr3.4:92806119-92806138 | MS.gene80210:intron | 45.0% | |
| TGGCAGAAAGCGAAACACAA+AGG | + | chr3.4:92802732-92802751 | MS.gene80210:CDS | 45.0% | |
| TGTAACAGGAGTTTCACCAG+GGG | + | chr3.4:92805073-92805092 | MS.gene80210:intron | 45.0% | |
| TGTGTAACAGGAGTTTCACC+AGG | + | chr3.4:92805071-92805090 | MS.gene80210:intron | 45.0% | |
| TGTTTGTGCCTTTCAGGAAG+AGG | + | chr3.4:92806113-92806132 | MS.gene80210:intron | 45.0% | |
| TTCAGGAAGAGGATAAGGCA+AGG | + | chr3.4:92806124-92806143 | MS.gene80210:intron | 45.0% | |
| TTCGGTTCAGTATAGGCCAT+AGG | + | chr3.4:92804015-92804034 | MS.gene80210:intron | 45.0% | |
| TTGGAAAGAGTGGTGAGGAT+CGG | - | chr3.4:92802466-92802485 | None:intergenic | 45.0% | |
| TTTCTCTCTCTCTGGACTCT+GGG | + | chr3.4:92803064-92803083 | MS.gene80210:intron | 45.0% | |
| ! | ACTGTTGTTGTTGGTTGTGG+CGG | - | chr3.4:92802550-92802569 | None:intergenic | 45.0% |
| ! | ATTTTACGCAAGAGACGAGC+TGG | + | chr3.4:92805549-92805568 | MS.gene80210:CDS | 45.0% |
| ! | GGTACTGTTGTTGTTGGTTG+TGG | - | chr3.4:92802553-92802572 | None:intergenic | 45.0% |
| ! | GTTCTGTGAAATGGTGGAGT+GGG | - | chr3.4:92802422-92802441 | None:intergenic | 45.0% |
| ! | TGGAAGCAGTAATGGCTTGT+TGG | + | chr3.4:92803773-92803792 | MS.gene80210:CDS | 45.0% |
| ! | TGTTCTGTGAAATGGTGGAG+TGG | - | chr3.4:92802423-92802442 | None:intergenic | 45.0% |
| ! | TTGTCCTAACGCAGAGTACT+TGG | - | chr3.4:92802886-92802905 | None:intergenic | 45.0% |
| ! | TTTTCTCTCTCTCTGGACTC+TGG | + | chr3.4:92803063-92803082 | MS.gene80210:intron | 45.0% |
| !! | GGAAGCAGTAATGGCTTGTT+GGG | + | chr3.4:92803774-92803793 | MS.gene80210:CDS | 45.0% |
| !! | AATAATTTATAATGATATAA+TGG | + | chr3.4:92804326-92804345 | MS.gene80210:intron | 5.0% |
| !! | CTTATTAATTAAAATAATTA+AGG | + | chr3.4:92803267-92803286 | MS.gene80210:intron | 5.0% |
| ACATGTCCGAGTCCATGCAA+TGG | + | chr3.4:92803753-92803772 | MS.gene80210:CDS | 50.0% | |
| AGACGAGCTGGAAAACTTCC+TGG | + | chr3.4:92805561-92805580 | MS.gene80210:CDS | 50.0% | |
| AGAGAATGAGAGGTCCCTCA+TGG | + | chr3.4:92805220-92805239 | MS.gene80210:CDS | 50.0% | |
| CAAAGGAGGAACATGGCTAC+AGG | + | chr3.4:92804661-92804680 | MS.gene80210:intron | 50.0% | |
| CATGGACTCGGACATGTTGT+TGG | - | chr3.4:92803750-92803769 | None:intergenic | 50.0% | |
| CTGCTTCCATTGCATGGACT+CGG | - | chr3.4:92803762-92803781 | None:intergenic | 50.0% | |
| GAAGTCATCGACGACGTTAC+CGG | + | chr3.4:92802654-92802673 | MS.gene80210:CDS | 50.0% | |
| GCAGTTTGGAAAGAGTGGTG+AGG | - | chr3.4:92802471-92802490 | None:intergenic | 50.0% | |
| GGAAGAGGATAAGGCAAGGT+TGG | + | chr3.4:92806128-92806147 | MS.gene80210:intron | 50.0% | |
| GTACTCTGCGTTAGGACAAC+AGG | + | chr3.4:92802887-92802906 | MS.gene80210:CDS | 50.0% | |
| GTTGCCAAGTACTCTGCGTT+AGG | + | chr3.4:92802879-92802898 | MS.gene80210:CDS | 50.0% | |
| TGAAACAGGTACGGTCCTCA+TGG | + | chr3.4:92805273-92805292 | MS.gene80210:intron | 50.0% | |
| TGACTTCGCTGTGGTTTCGA+TGG | - | chr3.4:92802641-92802660 | None:intergenic | 50.0% | |
| TGAGCCAGTTAGGTGCAGTT+TGG | - | chr3.4:92802485-92802504 | None:intergenic | 50.0% | |
| ! | AGTACTGAGGTTGTGTCACC+AGG | - | chr3.4:92805582-92805601 | None:intergenic | 50.0% |
| ! | CTGCTGCCGCAGTATGTTTT+CGG | + | chr3.4:92803997-92804016 | MS.gene80210:intron | 50.0% |
| !! | AATGGTGGAGTGGGTTGTCT+TGG | - | chr3.4:92802413-92802432 | None:intergenic | 50.0% |
| !! | CAAGGTTGGTGCAAGAAACC+GGG | + | chr3.4:92806142-92806161 | MS.gene80210:CDS | 50.0% |
| !! | GCAAGGTTGGTGCAAGAAAC+CGG | + | chr3.4:92806141-92806160 | MS.gene80210:CDS | 50.0% |
| ACAGGAGTTTCACCAGGGGA+AGG | + | chr3.4:92805077-92805096 | MS.gene80210:intron | 55.0% | |
| AGAGCCATTGACCGGAGGAT+TGG | - | chr3.4:92802605-92802624 | None:intergenic | 55.0% | |
| ATCCTGGGCAACTGGTCAAC+CGG | - | chr3.4:92802828-92802847 | None:intergenic | 55.0% | |
| ATGCGACTGCGACATCAACG+AGG | - | chr3.4:92803692-92803711 | None:intergenic | 55.0% | |
| CGTTGAAGAGCAAGCGCAAG+AGG | + | chr3.4:92806244-92806263 | MS.gene80210:CDS | 55.0% | |
| CTGTGGTTTCGATGGAGGAC+AGG | - | chr3.4:92802633-92802652 | None:intergenic | 55.0% | |
| CTTCGCTGTGGTTTCGATGG+AGG | - | chr3.4:92802638-92802657 | None:intergenic | 55.0% | |
| GAAAGAGTGGTGAGGATCGG+AGG | - | chr3.4:92802463-92802482 | None:intergenic | 55.0% | |
| GAGCCATTGACCGGAGGATT+GGG | - | chr3.4:92802604-92802623 | None:intergenic | 55.0% | |
| GGTATGAAGGCCGAGGAAAG+CGG | + | chr3.4:92802681-92802700 | MS.gene80210:CDS | 55.0% | |
| GGTTTCGATGGAGGACAGGA+CGG | - | chr3.4:92802629-92802648 | None:intergenic | 55.0% | |
| GTGTTTGAGAATCGCCACGC+CGG | + | chr3.4:92802806-92802825 | MS.gene80210:CDS | 55.0% | |
| GTTCCCAATCCTCCGGTCAA+TGG | + | chr3.4:92802598-92802617 | MS.gene80210:CDS | 55.0% | |
| GTTTCGATGGAGGACAGGAC+GGG | - | chr3.4:92802628-92802647 | None:intergenic | 55.0% | |
| TGTTGCCTCACCGCTTTCCT+CGG | - | chr3.4:92802694-92802713 | None:intergenic | 55.0% | |
| TTGACCGGAGGATTGGGAAC+CGG | - | chr3.4:92802598-92802617 | None:intergenic | 55.0% | |
| ! | GGTGTCGAGGTTGAGGAAGT+TGG | - | chr3.4:92802574-92802593 | None:intergenic | 55.0% |
| ! | GGTGTCGAGGTTGCGAAGAA+GGG | - | chr3.4:92802514-92802533 | None:intergenic | 55.0% |
| ! | GTTGTTGTTGGTTGTGGCGG+TGG | - | chr3.4:92802547-92802566 | None:intergenic | 55.0% |
| ! | GTTTCACCAGGGGAAGGTAC+AGG | + | chr3.4:92805083-92805102 | MS.gene80210:CDS | 55.0% |
| ! | TGGTGTCGAGGTTGCGAAGA+AGG | - | chr3.4:92802515-92802534 | None:intergenic | 55.0% |
| !! | AGGGCGTTGTTGAGCCAGTT+AGG | - | chr3.4:92802495-92802514 | None:intergenic | 55.0% |
| AGGACGGGAGAGCCATTGAC+CGG | - | chr3.4:92802613-92802632 | None:intergenic | 60.0% | |
| CAGCGGAGGGAGTGATGAAC+TGG | + | chr3.4:92802712-92802731 | MS.gene80210:CDS | 60.0% | |
| CGTCGTCGATGACTTCGCTG+TGG | - | chr3.4:92802650-92802669 | None:intergenic | 60.0% | |
| CTCTCTCTCTGGACTCTGGG+TGG | + | chr3.4:92803067-92803086 | MS.gene80210:intron | 60.0% | |
| GAGTGGTGAGGATCGGAGGT+TGG | - | chr3.4:92802459-92802478 | None:intergenic | 60.0% | |
| GGAAAGCGGTGAGGCAACAG+CGG | + | chr3.4:92802695-92802714 | MS.gene80210:CDS | 60.0% | |
| GTTGCTCCTGTACCTTCCCC+TGG | - | chr3.4:92805092-92805111 | None:intergenic | 60.0% | |
| TTCCTCAACCTCGACACCGC+CGG | + | chr3.4:92802576-92802595 | MS.gene80210:CDS | 60.0% | |
| !! | CGTTACCGGCGCTGGTATGA+AGG | + | chr3.4:92802668-92802687 | MS.gene80210:CDS | 60.0% |
| !! | TGGCGTTGACGTTGGTGTCG+AGG | - | chr3.4:92802527-92802546 | None:intergenic | 60.0% |
| AAGCGGTGAGGCAACAGCGG+AGG | + | chr3.4:92802698-92802717 | MS.gene80210:CDS | 65.0% | |
| ACCGGAGGATTGGGAACCGG+CGG | - | chr3.4:92802595-92802614 | None:intergenic | 65.0% | |
| ACGGGAGAGCCATTGACCGG+AGG | - | chr3.4:92802610-92802629 | None:intergenic | 65.0% | |
| AGCGGTGAGGCAACAGCGGA+GGG | + | chr3.4:92802699-92802718 | MS.gene80210:CDS | 65.0% | |
| ATCGACGACGTTACCGGCGC+TGG | + | chr3.4:92802660-92802679 | MS.gene80210:CDS | 65.0% | |
| CTCGGCCTTCATACCAGCGC+CGG | - | chr3.4:92802676-92802695 | None:intergenic | 65.0% | |
| GAAGGCCGAGGAAAGCGGTG+AGG | + | chr3.4:92802686-92802705 | MS.gene80210:CDS | 65.0% | |
| ! | AACCGGCGGTGTCGAGGTTG+AGG | - | chr3.4:92802581-92802600 | None:intergenic | 65.0% |
| ! | ATTGGGAACCGGCGGTGTCG+AGG | - | chr3.4:92802587-92802606 | None:intergenic | 65.0% |
| !! | ACCGCCGGTTCCCAATCCTC+CGG | + | chr3.4:92802591-92802610 | MS.gene80210:CDS | 65.0% |
| !! | GAGCGTCGATCCTGGGCAAC+TGG | - | chr3.4:92802836-92802855 | None:intergenic | 65.0% |
| !! | GCCAGCTGAGCGTCGATCCT+GGG | - | chr3.4:92802843-92802862 | None:intergenic | 65.0% |
| !! | TGCCAGCTGAGCGTCGATCC+TGG | - | chr3.4:92802844-92802863 | None:intergenic | 65.0% |
| !! | TGTGGCGGTGGCGTTGACGT+TGG | - | chr3.4:92802535-92802554 | None:intergenic | 65.0% |
| GCCCAGGATCGACGCTCAGC+TGG | + | chr3.4:92802839-92802858 | MS.gene80210:CDS | 70.0% | |
| GGGCAACTGGTCAACCGGCG+TGG | - | chr3.4:92802823-92802842 | None:intergenic | 70.0% | |
| ! | CGCCGGTTGACCAGTTGCCC+AGG | + | chr3.4:92802823-92802842 | MS.gene80210:CDS | 70.0% |
| !! | CGGCGCTGGTATGAAGGCCG+AGG | + | chr3.4:92802674-92802693 | MS.gene80210:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92802396 | 92806358 | 92802396 | ID=MS.gene80210 |
| chr3.4 | mRNA | 92802396 | 92806358 | 92802396 | ID=MS.gene80210.t1;Parent=MS.gene80210 |
| chr3.4 | exon | 92802396 | 92802953 | 92802396 | ID=MS.gene80210.t1.exon1;Parent=MS.gene80210.t1 |
| chr3.4 | CDS | 92802396 | 92802953 | 92802396 | ID=cds.MS.gene80210.t1;Parent=MS.gene80210.t1 |
| chr3.4 | exon | 92803706 | 92803826 | 92803706 | ID=MS.gene80210.t1.exon2;Parent=MS.gene80210.t1 |
| chr3.4 | CDS | 92803706 | 92803826 | 92803706 | ID=cds.MS.gene80210.t1;Parent=MS.gene80210.t1 |
| chr3.4 | exon | 92805081 | 92805280 | 92805081 | ID=MS.gene80210.t1.exon3;Parent=MS.gene80210.t1 |
| chr3.4 | CDS | 92805081 | 92805280 | 92805081 | ID=cds.MS.gene80210.t1;Parent=MS.gene80210.t1 |
| chr3.4 | exon | 92805513 | 92805644 | 92805513 | ID=MS.gene80210.t1.exon4;Parent=MS.gene80210.t1 |
| chr3.4 | CDS | 92805513 | 92805644 | 92805513 | ID=cds.MS.gene80210.t1;Parent=MS.gene80210.t1 |
| chr3.4 | exon | 92806129 | 92806265 | 92806129 | ID=MS.gene80210.t1.exon5;Parent=MS.gene80210.t1 |
| chr3.4 | CDS | 92806129 | 92806265 | 92806129 | ID=cds.MS.gene80210.t1;Parent=MS.gene80210.t1 |
| chr3.4 | exon | 92806355 | 92806358 | 92806355 | ID=MS.gene80210.t1.exon6;Parent=MS.gene80210.t1 |
| chr3.4 | CDS | 92806355 | 92806358 | 92806355 | ID=cds.MS.gene80210.t1;Parent=MS.gene80210.t1 |
| Gene Sequence |
| Protein sequence |
