AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52293

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52293.t1 MTR_7g084760 98.294 293 5 0 1 293 1 293 0.0 607
MS.gene52293.t1 MTR_7g084770 97.611 293 7 0 1 293 1 293 0.0 605
MS.gene52293.t1 MTR_7g084750 85.324 293 43 0 1 293 1 293 0.0 543
MS.gene52293.t1 MTR_6g033055 82.594 293 51 0 1 293 1 293 0.0 521
MS.gene52293.t1 MTR_6g033085 81.570 293 54 0 1 293 1 293 0.0 515
MS.gene52293.t1 MTR_2g089140 50.172 291 124 4 7 289 11 288 5.21e-103 303
MS.gene52293.t1 MTR_4g097700 54.864 257 114 2 32 287 69 324 4.46e-102 301
MS.gene52293.t1 MTR_4g097640 54.864 257 114 2 32 287 32 287 6.34e-102 300
MS.gene52293.t1 MTR_4g097670 54.864 257 114 2 32 287 32 287 6.34e-102 300
MS.gene52293.t1 MTR_3g084630 52.055 292 128 3 1 291 1 281 2.63e-101 298
MS.gene52293.t1 MTR_4g128410 52.941 289 122 4 3 288 4 281 2.94e-101 298
MS.gene52293.t1 MTR_4g045853 49.310 290 131 4 6 287 7 288 4.15e-101 298
MS.gene52293.t1 MTR_3g084620 53.169 284 116 4 9 291 14 281 7.50e-101 297
MS.gene52293.t1 MTR_8g081040 52.448 286 120 5 5 289 13 283 1.04e-99 294
MS.gene52293.t1 MTR_7g093530 52.817 284 120 4 7 287 7 279 3.76e-97 287
MS.gene52293.t1 MTR_4g128580 54.924 264 107 3 32 287 26 285 5.75e-96 285
MS.gene52293.t1 MTR_4g128570 51.064 282 120 4 7 287 8 272 2.02e-94 280
MS.gene52293.t1 MTR_1g105900 47.719 285 144 3 5 287 10 291 2.36e-94 281
MS.gene52293.t1 MTR_8g102220 48.464 293 126 5 1 291 1 270 1.04e-93 278
MS.gene52293.t1 MTR_1g105495 48.966 290 143 3 3 288 7 295 3.33e-93 278
MS.gene52293.t1 MTR_6g088320 48.864 264 129 4 28 287 22 283 3.37e-93 278
MS.gene52293.t1 MTR_4g126920 52.490 261 115 3 32 287 25 281 1.97e-92 275
MS.gene52293.t1 MTR_8g102910 47.872 282 134 6 15 287 2 279 9.53e-91 271
MS.gene52293.t1 MTR_2g038860 51.698 265 115 3 32 287 26 286 5.43e-90 270
MS.gene52293.t1 MTR_2g038705 51.698 265 115 3 32 287 26 286 5.43e-90 270
MS.gene52293.t1 MTR_2g089140 54.667 225 94 2 73 289 1 225 1.32e-89 266
MS.gene52293.t1 MTR_4g128400 50.189 265 122 4 30 287 22 283 2.94e-89 268
MS.gene52293.t1 MTR_8g013055 48.263 259 133 1 29 287 28 285 1.03e-87 263
MS.gene52293.t1 MTR_4g128590 51.172 256 104 3 39 289 38 277 1.73e-83 253
MS.gene52293.t1 MTR_7g056090 45.296 287 143 6 3 288 9 282 7.04e-80 243
MS.gene52293.t1 MTR_5g091730 48.548 241 117 2 50 289 46 280 2.12e-79 243
MS.gene52293.t1 MTR_3g089540 47.177 248 118 3 51 293 49 288 2.26e-79 242
MS.gene52293.t1 MTR_2g049030 42.254 284 151 9 7 288 5 277 1.62e-69 217
MS.gene52293.t1 MTR_2g049130 43.841 276 144 9 8 277 1 271 3.79e-67 211
MS.gene52293.t1 MTR_5g029100 37.313 268 156 5 30 287 40 305 4.71e-59 192
MS.gene52293.t1 MTR_4g057450 38.095 273 152 7 23 287 41 304 1.58e-58 189
MS.gene52293.t1 MTR_8g064180 33.333 303 181 5 6 288 10 311 1.71e-57 187
MS.gene52293.t1 MTR_7g102260 37.410 278 146 7 31 287 21 291 2.01e-57 186
MS.gene52293.t1 MTR_1g063020 38.545 275 148 8 23 287 31 294 3.44e-57 186
MS.gene52293.t1 MTR_1g033420 36.519 293 173 6 5 290 8 294 5.70e-57 186
MS.gene52293.t1 MTR_2g095800 35.738 305 162 9 7 287 15 309 8.37e-57 185
MS.gene52293.t1 MTR_8g090100 36.059 269 155 6 30 287 19 281 1.08e-54 180
MS.gene52293.t1 MTR_5g029100 34.375 288 164 6 10 287 2 274 3.46e-53 176
MS.gene52293.t1 MTR_8g479340 35.484 186 59 3 103 287 10 135 3.83e-28 105
MS.gene52293.t1 MTR_8g032640 33.908 174 107 4 54 225 33 200 4.38e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52293.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 509
MS.gene52293.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 509
MS.gene52293.t1 AT5G13870 80.488 287 56 0 7 293 7 293 0.0 509
MS.gene52293.t1 AT2G06850 76.792 293 67 1 1 292 3 295 4.74e-176 488
MS.gene52293.t1 AT2G06850 80.952 231 44 0 62 292 5 235 3.56e-147 412
MS.gene52293.t1 AT5G65730 51.590 283 133 3 7 288 12 291 6.58e-106 310
MS.gene52293.t1 AT3G23730 56.061 264 112 2 32 291 27 290 1.51e-105 309
MS.gene52293.t1 AT4G14130 57.812 256 103 3 39 291 35 288 1.77e-103 304
MS.gene52293.t1 AT4G03210 50.172 291 136 3 5 293 7 290 9.83e-102 299
MS.gene52293.t1 AT4G37800 50.704 284 133 3 5 287 12 289 5.46e-101 298
MS.gene52293.t1 AT5G57550 50.173 289 137 3 1 288 1 283 8.94e-98 289
MS.gene52293.t1 AT5G57560 51.220 287 121 4 8 287 7 281 2.28e-97 288
MS.gene52293.t1 AT4G25810 51.408 284 123 5 10 287 9 283 5.57e-96 285
MS.gene52293.t1 AT4G30270 51.408 284 111 5 5 287 8 265 8.74e-95 281
MS.gene52293.t1 AT4G13090 48.797 291 144 3 1 288 1 289 1.82e-94 281
MS.gene52293.t1 AT5G57530 53.516 256 111 4 39 290 34 285 7.20e-94 279
MS.gene52293.t1 AT4G03210 55.411 231 101 1 65 293 32 262 1.44e-93 278
MS.gene52293.t1 AT5G57540 52.471 263 117 4 32 290 26 284 1.68e-93 278
MS.gene52293.t1 AT1G11545 50.352 284 131 4 10 287 20 299 2.28e-93 278
MS.gene52293.t1 AT5G48070 54.167 240 104 3 49 287 47 281 9.83e-90 268
MS.gene52293.t1 AT4G28850 45.517 290 147 5 7 291 8 291 2.18e-88 265
MS.gene52293.t1 AT2G14620 48.450 258 131 2 32 287 37 294 3.51e-88 265
MS.gene52293.t1 AT2G18800 47.794 272 123 4 32 287 28 296 1.15e-86 261
MS.gene52293.t1 AT4G25820 51.181 254 116 3 39 288 37 286 6.08e-86 259
MS.gene52293.t1 AT3G25050 47.510 261 130 4 30 287 33 289 1.56e-85 258
MS.gene52293.t1 AT4G13080 46.718 259 135 3 30 288 37 292 1.64e-85 258
MS.gene52293.t1 AT4G30290 53.982 226 98 3 63 287 56 276 6.25e-83 251
MS.gene52293.t1 AT1G65310 54.425 226 97 3 63 287 61 281 3.83e-82 249
MS.gene52293.t1 AT1G65310 54.425 226 97 3 63 287 83 303 4.00e-82 250
MS.gene52293.t1 AT4G30280 53.540 226 99 3 63 287 61 281 8.03e-82 248
MS.gene52293.t1 AT2G14620 49.160 238 119 2 52 287 7 244 1.43e-81 246
MS.gene52293.t1 AT2G14620 51.598 219 104 2 71 287 15 233 1.84e-79 241
MS.gene52293.t1 AT3G44990 42.264 265 136 7 31 287 38 293 2.62e-61 196
MS.gene52293.t1 AT1G32170 40.249 241 136 4 54 287 54 293 9.00e-59 191
MS.gene52293.t1 AT3G48580 39.922 258 139 5 30 287 32 273 2.79e-58 188
MS.gene52293.t1 AT1G14720 35.739 291 176 5 3 287 5 290 3.72e-57 187
MS.gene52293.t1 AT2G36870 40.244 246 132 5 52 289 61 299 3.13e-56 183
MS.gene52293.t1 AT4G18990 38.889 252 135 4 54 287 62 312 6.50e-55 182
MS.gene52293.t1 AT2G01850 38.430 242 143 3 51 287 50 290 2.71e-53 177
MS.gene52293.t1 AT1G10550 36.364 253 142 6 51 287 60 309 2.88e-52 174
MS.gene52293.t1 AT3G48580 39.381 226 122 4 62 287 4 214 1.11e-50 167
MS.gene52293.t1 AT4G18990 35.345 232 123 5 81 287 9 238 5.98e-43 149
MS.gene52293.t1 AT3G48580 34.884 258 132 6 30 287 32 253 6.14e-43 148
MS.gene52293.t1 AT2G36870 44.915 118 57 2 52 161 61 178 3.82e-28 107

Find 63 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAATGAACTCTTCATTT+TGG 0.153367 7.3:-23869883 None:intergenic
TGAAGATATACAACAGTTTA+TGG 0.169467 7.3:-23868900 MS.gene52293:CDS
AAGAACAAAGGATCTTTCTT+TGG 0.288385 7.3:-23869160 MS.gene52293:CDS
TTCACAGATACTCCATTCTA+TGG 0.293190 7.3:-23869118 MS.gene52293:CDS
ATCAGTGCAATAGTTGTAAA+TGG 0.324527 7.3:+23868657 None:intergenic
ATCTTCATTGGTTGGTCAAA+TGG 0.328683 7.3:+23868916 None:intergenic
GCATCAAGATCACGAAATTC+AGG 0.366582 7.3:+23868721 None:intergenic
AAACTGTTGTATATCTTCAT+TGG 0.377706 7.3:+23868904 None:intergenic
CTGCCAAACGGTACATCAAC+TGG 0.381488 7.3:+23869800 None:intergenic
TCCAAAGGTTCATACTTGTT+TGG 0.384057 7.3:-23869445 MS.gene52293:CDS
TACAAAGGTTTCCACATTGA+TGG 0.385031 7.3:-23868805 MS.gene52293:CDS
GCCTGCTATGAATGGTGCTT+TGG 0.386418 7.3:+23868828 None:intergenic
GATCATATCAAATACTTCAA+TGG 0.398017 7.3:-23869752 MS.gene52293:CDS
GTTTATGGAATGCAGATGAT+TGG 0.401396 7.3:-23868885 MS.gene52293:CDS
ACCAAACAAGTATGAACCTT+TGG 0.401617 7.3:+23869444 None:intergenic
ACATTTGTTTGTAAAATGTA+AGG 0.414616 7.3:+23869206 None:intergenic
GAGTTCTTGGGGAACAGAAC+AGG 0.419669 7.3:-23869233 MS.gene52293:CDS
CTGGTACATGTTCCATAGAA+TGG 0.433083 7.3:+23869106 None:intergenic
CAAGTAGTACTTACACAATC+TGG 0.439811 7.3:+23869087 None:intergenic
TCTTCATTGGTTGGTCAAAT+GGG 0.444373 7.3:+23868917 None:intergenic
TTACAAACAAATGTGTTCAC+TGG 0.454841 7.3:-23869197 MS.gene52293:CDS
CTCAATGGCGTAGACTAAGA+TGG 0.467350 7.3:-23868696 MS.gene52293:CDS
TTTATGGAATGCAGATGATT+GGG 0.473254 7.3:-23868884 MS.gene52293:CDS
GTGATCTTGATGCTGCTCAA+TGG 0.483264 7.3:-23868711 MS.gene52293:CDS
TGTTGTATATCTTCATTGGT+TGG 0.483857 7.3:+23868908 None:intergenic
TTTCAGTATGAACATTAAGA+TGG 0.493779 7.3:-23869419 MS.gene52293:CDS
AAGCCAGTTGATGTACCGTT+TGG 0.494859 7.3:-23869803 MS.gene52293:CDS
TTTCTCTAATCCACCTCTTG+TGG 0.505041 7.3:+23868861 None:intergenic
ATGGTCCCTGGTGATTCAGC+TGG 0.509324 7.3:-23869400 MS.gene52293:CDS
TTGCATTCTGGTGGAACTTG+AGG 0.515049 7.3:+23868622 None:intergenic
GCAGAAACTATTACCCCACT+TGG 0.516801 7.3:-23869781 MS.gene52293:CDS
TGTACTTATCAAGATGAAGT+TGG 0.517285 7.3:+23869717 None:intergenic
GGGTAATAGTTTCTGCCAAA+CGG 0.530859 7.3:+23869788 None:intergenic
GGTACATCAACTGGCTTACG+TGG 0.544706 7.3:+23869809 None:intergenic
CCTTTGTAGCCTGCTATGAA+TGG 0.547075 7.3:+23868820 None:intergenic
CAAACAAATGTGTTCACTGG+TGG 0.551578 7.3:-23869194 MS.gene52293:CDS
GATGATTGGGCCACAAGAGG+TGG 0.552403 7.3:-23868871 MS.gene52293:CDS
TCCAAAGCACCATTCATAGC+AGG 0.568617 7.3:-23868829 MS.gene52293:CDS
CCATTCATAGCAGGCTACAA+AGG 0.570384 7.3:-23868820 MS.gene52293:CDS
ATGAACATTAAGATGGTCCC+TGG 0.574606 7.3:-23869412 MS.gene52293:CDS
CAGAAACTATTACCCCACTT+GGG 0.575217 7.3:-23869780 MS.gene52293:CDS
CAACACAAGGTAAAAGATGG+TGG 0.580512 7.3:-23868750 MS.gene52293:CDS
TCAATGGCGTAGACTAAGAT+GGG 0.582539 7.3:-23868695 MS.gene52293:CDS
GTGCAACACAAGGTAAAAGA+TGG 0.584463 7.3:-23868753 MS.gene52293:CDS
CTTCATCTTGATAAGTACAC+TGG 0.589751 7.3:-23869713 MS.gene52293:intron
GTGGATTAGAGAAAACAGAT+TGG 0.595136 7.3:-23868852 MS.gene52293:CDS
CGATGAACATTTAAATGTCA+CGG 0.595421 7.3:+23868593 None:intergenic
GCAGATGATTGGGCCACAAG+AGG 0.605501 7.3:-23868874 MS.gene52293:CDS
TACATCAACTGGCTTACGTG+GGG 0.605678 7.3:+23869811 None:intergenic
AATGTGTTCACTGGTGGACA+AGG 0.617308 7.3:-23869188 MS.gene52293:CDS
ACTGTTCCAGCTGAATCACC+AGG 0.622053 7.3:+23869394 None:intergenic
GTACATCAACTGGCTTACGT+GGG 0.622119 7.3:+23869810 None:intergenic
CATATCAAATACTTCAATGG+TGG 0.624848 7.3:-23869749 MS.gene52293:CDS
GCAAAGTTCTGTGCAACACA+AGG 0.625558 7.3:-23868763 MS.gene52293:CDS
AACACAAGGTAAAAGATGGT+GGG 0.632388 7.3:-23868749 MS.gene52293:CDS
ATATGATCAAAAGCCCAAGT+GGG 0.644752 7.3:+23869767 None:intergenic
GATATGATCAAAAGCCCAAG+TGG 0.646471 7.3:+23869766 None:intergenic
GACAAGGTAACAAAGAACAA+AGG 0.658573 7.3:-23869172 MS.gene52293:CDS
ACAGAACTTTGCATTAACAG+AGG 0.661986 7.3:+23868774 None:intergenic
ACATCAACTGGCTTACGTGG+GGG 0.674719 7.3:+23869812 None:intergenic
TATGATCAAAAGCCCAAGTG+GGG 0.682880 7.3:+23869768 None:intergenic
AGGATTCACAACCATCAATG+TGG 0.698159 7.3:+23868794 None:intergenic
CTGTTCCAGCTGAATCACCA+GGG 0.721487 7.3:+23869395 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTACTCAAATT+TGG + chr7.3:23869454-23869473 None:intergenic 10.0%
!!! AATTTTTTTGAAACTATGAT+TGG - chr7.3:23869471-23869490 MS.gene52293:intron 15.0%
!!! TGAAAAAACTTTAATTTGTT+AGG + chr7.3:23869133-23869152 None:intergenic 15.0%
!! ACATTTGTTTGTAAAATGTA+AGG + chr7.3:23869278-23869297 None:intergenic 20.0%
!!! TTTCTAACTACTTTTTTAAC+AGG - chr7.3:23869000-23869019 MS.gene52293:intron 20.0%
! AAACTGTTGTATATCTTCAT+TGG + chr7.3:23869580-23869599 None:intergenic 25.0%
! GATCATATCAAATACTTCAA+TGG - chr7.3:23868729-23868748 MS.gene52293:CDS 25.0%
! TGAAGATATACAACAGTTTA+TGG - chr7.3:23869581-23869600 MS.gene52293:intron 25.0%
! TTTCAGTATGAACATTAAGA+TGG - chr7.3:23869062-23869081 MS.gene52293:intron 25.0%
!! TAGTACGAGTTTAAAACTAA+GGG + chr7.3:23868969-23868988 None:intergenic 25.0%
!!! AAATAGATTTTGAGTTCTTG+GGG - chr7.3:23869237-23869256 MS.gene52293:CDS 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG - chr7.3:23869236-23869255 MS.gene52293:CDS 25.0%
!!! TGAAATAGATTTTGAGTTCT+TGG - chr7.3:23869235-23869254 MS.gene52293:CDS 25.0%
AAGAACAAAGGATCTTTCTT+TGG - chr7.3:23869321-23869340 MS.gene52293:intron 30.0%
ATCAGTGCAATAGTTGTAAA+TGG + chr7.3:23869827-23869846 None:intergenic 30.0%
CATATCAAATACTTCAATGG+TGG - chr7.3:23868732-23868751 MS.gene52293:CDS 30.0%
TGTACTTATCAAGATGAAGT+TGG + chr7.3:23868767-23868786 None:intergenic 30.0%
TGTTGTATATCTTCATTGGT+TGG + chr7.3:23869576-23869595 None:intergenic 30.0%
TTACAAACAAATGTGTTCAC+TGG - chr7.3:23869284-23869303 MS.gene52293:intron 30.0%
TTTATGGAATGCAGATGATT+GGG - chr7.3:23869597-23869616 MS.gene52293:intron 30.0%
! GTAGTACGAGTTTAAAACTA+AGG + chr7.3:23868970-23868989 None:intergenic 30.0%
! TATCTGTGAAACTCTTTTGT+TGG + chr7.3:23869353-23869372 None:intergenic 30.0%
! TGTGTCATTCAAAACTATTG+TGG - chr7.3:23869427-23869446 MS.gene52293:CDS 30.0%
!!! ACTACTTTTTTAACAGGTAC+TGG - chr7.3:23869006-23869025 MS.gene52293:intron 30.0%
!!! ATTGGTTTGCAGATTTTTTG+TGG - chr7.3:23869489-23869508 MS.gene52293:intron 30.0%
!!! CTGTTTTTGAACACTCTTAT+TGG + chr7.3:23869523-23869542 None:intergenic 30.0%
AACACAAGGTAAAAGATGGT+GGG - chr7.3:23869732-23869751 MS.gene52293:CDS 35.0%
AACGCTTGTGTATAAGCTAT+AGG - chr7.3:23868885-23868904 MS.gene52293:CDS 35.0%
ACAGAACTTTGCATTAACAG+AGG + chr7.3:23869710-23869729 None:intergenic 35.0%
ACCAAACAAGTATGAACCTT+TGG + chr7.3:23869040-23869059 None:intergenic 35.0%
ATATGATCAAAAGCCCAAGT+GGG + chr7.3:23868717-23868736 None:intergenic 35.0%
CAAGTAGTACTTACACAATC+TGG + chr7.3:23869397-23869416 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG - chr7.3:23868768-23868787 MS.gene52293:CDS 35.0%
GACAAGGTAACAAAGAACAA+AGG - chr7.3:23869309-23869328 MS.gene52293:intron 35.0%
GTTTATGGAATGCAGATGAT+TGG - chr7.3:23869596-23869615 MS.gene52293:intron 35.0%
TACAAAGGTTTCCACATTGA+TGG - chr7.3:23869676-23869695 MS.gene52293:intron 35.0%
TCCAAAGGTTCATACTTGTT+TGG - chr7.3:23869036-23869055 MS.gene52293:intron 35.0%
TTCAAAAACAGCAAGGACTT+AGG - chr7.3:23869532-23869551 MS.gene52293:intron 35.0%
TTCACAGATACTCCATTCTA+TGG - chr7.3:23869363-23869382 MS.gene52293:intron 35.0%
! ATCTTCATTGGTTGGTCAAA+TGG + chr7.3:23869568-23869587 None:intergenic 35.0%
! TCTTCATTGGTTGGTCAAAT+GGG + chr7.3:23869567-23869586 None:intergenic 35.0%
!! AAGAGTGTTCAAAAACAGCA+AGG - chr7.3:23869525-23869544 MS.gene52293:intron 35.0%
!! GTGGATTAGAGAAAACAGAT+TGG - chr7.3:23869629-23869648 MS.gene52293:intron 35.0%
!! TTTTCTATTTAGCTCGTGCT+CGG - chr7.3:23868815-23868834 MS.gene52293:CDS 35.0%
AGGATTCACAACCATCAATG+TGG + chr7.3:23869690-23869709 None:intergenic 40.0%
ATGAACATTAAGATGGTCCC+TGG - chr7.3:23869069-23869088 MS.gene52293:intron 40.0%
CAAACAAATGTGTTCACTGG+TGG - chr7.3:23869287-23869306 MS.gene52293:intron 40.0%
CAACACAAGGTAAAAGATGG+TGG - chr7.3:23869731-23869750 MS.gene52293:CDS 40.0%
CAGAAACTATTACCCCACTT+GGG - chr7.3:23868701-23868720 MS.gene52293:CDS 40.0%
CTGGTACATGTTCCATAGAA+TGG + chr7.3:23869378-23869397 None:intergenic 40.0%
GATATGATCAAAAGCCCAAG+TGG + chr7.3:23868718-23868737 None:intergenic 40.0%
GCATCAAGATCACGAAATTC+AGG + chr7.3:23869763-23869782 None:intergenic 40.0%
GGGTAATAGTTTCTGCCAAA+CGG + chr7.3:23868696-23868715 None:intergenic 40.0%
GTGCAACACAAGGTAAAAGA+TGG - chr7.3:23869728-23869747 MS.gene52293:CDS 40.0%
TATGATCAAAAGCCCAAGTG+GGG + chr7.3:23868716-23868735 None:intergenic 40.0%
TCAATGGCGTAGACTAAGAT+GGG - chr7.3:23869786-23869805 MS.gene52293:CDS 40.0%
TTTCTCTAATCCACCTCTTG+TGG + chr7.3:23869623-23869642 None:intergenic 40.0%
! CGAGTTTAAAACTAAGGGCA+TGG + chr7.3:23868964-23868983 None:intergenic 40.0%
!!! GGTACTGGTTTTCAATCCAA+AGG - chr7.3:23869021-23869040 MS.gene52293:intron 40.0%
CCATTCATAGCAGGCTACAA+AGG - chr7.3:23869661-23869680 MS.gene52293:intron 45.0%
CCTTTGTAGCCTGCTATGAA+TGG + chr7.3:23869664-23869683 None:intergenic 45.0%
CTCAATGGCGTAGACTAAGA+TGG - chr7.3:23869785-23869804 MS.gene52293:CDS 45.0%
GCAAAGTTCTGTGCAACACA+AGG - chr7.3:23869718-23869737 MS.gene52293:CDS 45.0%
GCAGAAACTATTACCCCACT+TGG - chr7.3:23868700-23868719 MS.gene52293:CDS 45.0%
GTGATCTTGATGCTGCTCAA+TGG - chr7.3:23869770-23869789 MS.gene52293:CDS 45.0%
TTGCATTCTGGTGGAACTTG+AGG + chr7.3:23869862-23869881 None:intergenic 45.0%
! AAGCCAGTTGATGTACCGTT+TGG - chr7.3:23868678-23868697 MS.gene52293:CDS 45.0%
! AATGTGTTCACTGGTGGACA+AGG - chr7.3:23869293-23869312 MS.gene52293:intron 45.0%
! GTACATCAACTGGCTTACGT+GGG + chr7.3:23868674-23868693 None:intergenic 45.0%
! TACATCAACTGGCTTACGTG+GGG + chr7.3:23868673-23868692 None:intergenic 45.0%
! TCACGGTCTCTTTTGCATTC+TGG + chr7.3:23869874-23869893 None:intergenic 45.0%
! TCCAAAGCACCATTCATAGC+AGG - chr7.3:23869652-23869671 MS.gene52293:intron 45.0%
ACTGTTCCAGCTGAATCACC+AGG + chr7.3:23869090-23869109 None:intergenic 50.0%
CTGCCAAACGGTACATCAAC+TGG + chr7.3:23868684-23868703 None:intergenic 50.0%
CTGTTCCAGCTGAATCACCA+GGG + chr7.3:23869089-23869108 None:intergenic 50.0%
GAGTTCTTGGGGAACAGAAC+AGG - chr7.3:23869248-23869267 MS.gene52293:CDS 50.0%
GCCTGCTATGAATGGTGCTT+TGG + chr7.3:23869656-23869675 None:intergenic 50.0%
! ACATCAACTGGCTTACGTGG+GGG + chr7.3:23868672-23868691 None:intergenic 50.0%
! CGGTCTCTTTTGCATTCTGG+TGG + chr7.3:23869871-23869890 None:intergenic 50.0%
! GGTACATCAACTGGCTTACG+TGG + chr7.3:23868675-23868694 None:intergenic 50.0%
ATGGTCCCTGGTGATTCAGC+TGG - chr7.3:23869081-23869100 MS.gene52293:intron 55.0%
GATGATTGGGCCACAAGAGG+TGG - chr7.3:23869610-23869629 MS.gene52293:intron 55.0%
GCAGATGATTGGGCCACAAG+AGG - chr7.3:23869607-23869626 MS.gene52293:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 23868603 23869900 23868603 ID=MS.gene52293
chr7.3 mRNA 23868603 23869900 23868603 ID=MS.gene52293.t1;Parent=MS.gene52293
chr7.3 exon 23869714 23869900 23869714 ID=MS.gene52293.t1.exon1;Parent=MS.gene52293.t1
chr7.3 CDS 23869714 23869900 23869714 ID=cds.MS.gene52293.t1;Parent=MS.gene52293.t1
chr7.3 exon 23869381 23869481 23869381 ID=MS.gene52293.t1.exon2;Parent=MS.gene52293.t1
chr7.3 CDS 23869381 23869481 23869381 ID=cds.MS.gene52293.t1;Parent=MS.gene52293.t1
chr7.3 exon 23869101 23869294 23869101 ID=MS.gene52293.t1.exon3;Parent=MS.gene52293.t1
chr7.3 CDS 23869101 23869294 23869101 ID=cds.MS.gene52293.t1;Parent=MS.gene52293.t1
chr7.3 exon 23868603 23869002 23868603 ID=MS.gene52293.t1.exon4;Parent=MS.gene52293.t1
chr7.3 CDS 23868603 23869002 23868603 ID=cds.MS.gene52293.t1;Parent=MS.gene52293.t1
Gene Sequence

>MS.gene52293

ATGAACTCTTCATTTTGGACTCTATGTTTGATTTTAGCATCACTAGTCTCTTTTTCATTATGTGCTCCCCCACGTAAGCCAGTTGATGTACCGTTTGGCAGAAACTATTACCCCACTTGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCAGAGATCCAACTTCATCTTGATAAGTACACTGGTTAGTGTTTAACACACTTCATAGCTTTTCTATTTAGCTCGTGCTCGGATAAACAACTTAATTTACAACTTATAATATAAACATTTATCATGATAAACGCTTGTGTATAAGCTATAGGAACATATCATAAATGATTATGCTAGTAGATATGCTATAATATGTCAAGTCAATCCATGCCCTTAGTTTTAAACTCGTACTACATTGTTCATTTTTCTAACTACTTTTTTAACAGGTACTGGTTTTCAATCCAAAGGTTCATACTTGTTTGGTCATTTCAGTATGAACATTAAGATGGTCCCTGGTGATTCAGCTGGAACAGTAACTGCTTTCTATGTATGTTCCTAACAAATTAAAGTTTTTTCATTTTGTTTCTATTTTTAGTATTTTGTTGTAATGACTTTTTTGTGATTACTTTACAGTTATCTTCACAAAATGCTGAGCATGATGAAATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGACAAGGTAACAAAGAACAAAGGATCTTTCTTTGGTTTGATCCAACAAAAGAGTTTCACAGATACTCCATTCTATGGAACATGTACCAGATTGTGTAAGTACTACTTGATTCAACAATTGTGTCATTCAAAACTATTGTGGTCCAAATTTGAGTAATTAATTAATTTTTTTGAAACTATGATTGGTTTGCAGATTTTTTGTGGATGATGTTCCAATAAGAGTGTTCAAAAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCAATGAAGATATACAACAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGATTAGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGCTACAAAGGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCAAAGTTCTGTGCAACACAAGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGAGAGAAATACACCATTTACAACTATTGCACTGATAGAAAACGTTTGCCTCAAGTTCCACCAGAATGCAAAAGAGACCGTGACATTTAA
Protein sequence

>MS.gene52293.t1

MNSSFWTLCLILASLVSFSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQGNKEQRIFLWFDPTKEFHRYSILWNMYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKGFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKYTIYNYCTDRKRLPQVPPECKRDRDI