Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70804.t1 | XP_024637976.1 | 92.4 | 170 | 13 | 0 | 1 | 170 | 1 | 170 | 2.60E-82 | 314.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70804.t1 | Q94BU8 | 57.2 | 159 | 62 | 2 | 11 | 163 | 25 | 183 | 1.4e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70804.t1 | A0A396JWV1 | 96.2 | 158 | 6 | 0 | 13 | 170 | 25 | 182 | 2.7e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04921 | MS.gene70804 | 0.800886 | 1.17E-48 | -1.69E-46 |
| MS.gene050071 | MS.gene70804 | 0.830168 | 3.42E-55 | -1.69E-46 |
| MS.gene050170 | MS.gene70804 | -0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene050864 | MS.gene70804 | 0.829572 | 4.78E-55 | -1.69E-46 |
| MS.gene051005 | MS.gene70804 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene052494 | MS.gene70804 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene70804 | 0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene054643 | MS.gene70804 | 0.804006 | 2.66E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene70804 | 0.826595 | 2.49E-54 | -1.69E-46 |
| MS.gene055331 | MS.gene70804 | 0.874108 | 8.74E-68 | -1.69E-46 |
| MS.gene05589 | MS.gene70804 | -0.806381 | 8.46E-50 | -1.69E-46 |
| MS.gene056266 | MS.gene70804 | -0.848069 | 7.75E-60 | -1.69E-46 |
| MS.gene056694 | MS.gene70804 | 0.804625 | 1.98E-49 | -1.69E-46 |
| MS.gene058210 | MS.gene70804 | 0.825699 | 4.07E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene70804 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene060076 | MS.gene70804 | 0.821221 | 4.53E-53 | -1.69E-46 |
| MS.gene06042 | MS.gene70804 | 0.833242 | 5.97E-56 | -1.69E-46 |
| MS.gene061044 | MS.gene70804 | 0.868742 | 5.21E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70804.t1 | MTR_1g081450 | 78.756 | 193 | 6 | 1 | 13 | 170 | 30 | 222 | 4.38e-105 | 300 |
| MS.gene70804.t1 | MTR_1g081420 | 81.875 | 160 | 27 | 2 | 1 | 159 | 1 | 159 | 3.68e-93 | 270 |
| MS.gene70804.t1 | MTR_1g081550 | 69.032 | 155 | 42 | 2 | 13 | 161 | 11 | 165 | 1.56e-74 | 221 |
| MS.gene70804.t1 | MTR_2g045280 | 60.843 | 166 | 59 | 2 | 4 | 163 | 33 | 198 | 1.34e-67 | 204 |
| MS.gene70804.t1 | MTR_4g124190 | 59.639 | 166 | 61 | 2 | 4 | 163 | 19 | 184 | 9.76e-67 | 202 |
| MS.gene70804.t1 | MTR_3g005755 | 52.318 | 151 | 42 | 4 | 11 | 161 | 75 | 195 | 1.17e-38 | 134 |
| MS.gene70804.t1 | MTR_1g081440 | 61.290 | 62 | 18 | 1 | 13 | 74 | 18 | 73 | 1.70e-19 | 78.6 |
| MS.gene70804.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 861 | 953 | 3.90e-13 | 66.6 |
| MS.gene70804.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 861 | 953 | 3.90e-13 | 66.6 |
| MS.gene70804.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 1054 | 1146 | 6.29e-13 | 66.2 |
| MS.gene70804.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 1054 | 1146 | 6.41e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70804.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 10 | 163 | 24 | 183 | 4.09e-64 | 195 |
| MS.gene70804.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 10 | 163 | 43 | 202 | 5.82e-64 | 195 |
| MS.gene70804.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 10 | 163 | 129 | 288 | 2.23e-63 | 197 |
| MS.gene70804.t1 | AT3G05300 | 54.464 | 112 | 42 | 3 | 56 | 161 | 1 | 109 | 3.26e-36 | 122 |
| MS.gene70804.t1 | AT1G68720 | 37.736 | 106 | 63 | 2 | 12 | 115 | 1104 | 1208 | 6.30e-15 | 72.0 |
Find 26 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGATAACGTTTCCCTTGC+TGG | 0.263455 | 1.2:-61035917 | MS.gene70804:CDS |
| ATTGGATTTAGTAATTATAT+TGG | 0.292521 | 1.2:-61035688 | MS.gene70804:CDS |
| ATCAAGCAGAGAATGGTTTA+TGG | 0.295789 | 1.2:-61035736 | MS.gene70804:intron |
| GGAGAAGCTGCAAGATCAAT+TGG | 0.402712 | 1.2:-61035706 | MS.gene70804:CDS |
| CGAACAATCAGTGCACCATA+TGG | 0.427952 | 1.2:+61037992 | None:intergenic |
| GCTGCTGCTTCTGCTGCAAA+TGG | 0.442414 | 1.2:-61039726 | MS.gene70804:intron |
| GAACCTTGTCCAATGTGCTT+TGG | 0.444790 | 1.2:-61035872 | MS.gene70804:CDS |
| GCATATGAAGCTGTTGAATC+TGG | 0.453061 | 1.2:-61038025 | MS.gene70804:CDS |
| TTTAGTAATTATATTGGCAA+GGG | 0.530272 | 1.2:-61035682 | MS.gene70804:CDS |
| GAACAATCAGTGCACCATAT+GGG | 0.543114 | 1.2:+61037993 | None:intergenic |
| ATTTAGTAATTATATTGGCA+AGG | 0.547598 | 1.2:-61035683 | MS.gene70804:CDS |
| ATGATCTCAGCATGAGCAGT+TGG | 0.550399 | 1.2:+61037917 | None:intergenic |
| TGATCTTGCAGCTTCTCCTG+TGG | 0.555500 | 1.2:+61035711 | None:intergenic |
| AGAATGGTTTATGGAGCCAC+AGG | 0.555557 | 1.2:-61035727 | MS.gene70804:CDS |
| GAAGACAAAGGACAAGGTAA+AGG | 0.557065 | 1.2:-61035587 | MS.gene70804:CDS |
| CATCATTCATCACATGGAGC+AGG | 0.570009 | 1.2:-61039748 | None:intergenic |
| TCTGGTGATGGATACCCATA+TGG | 0.575775 | 1.2:-61038007 | MS.gene70804:CDS |
| TCTCATTATACCAGCTGCAG+AGG | 0.577400 | 1.2:-61038086 | MS.gene70804:intron |
| TGAATAGCACCAAAGCACAT+TGG | 0.603526 | 1.2:+61035863 | None:intergenic |
| AGAAGTATTTGAGAAGACAA+AGG | 0.606818 | 1.2:-61035599 | MS.gene70804:CDS |
| GAAGCTGTTGAATCTGGTGA+TGG | 0.621594 | 1.2:-61038019 | MS.gene70804:CDS |
| TGTACATTTCACAGCCAGCA+AGG | 0.622518 | 1.2:+61035903 | None:intergenic |
| GTACATTTCACAGCCAGCAA+GGG | 0.636395 | 1.2:+61035904 | None:intergenic |
| GCACCAAAGCACATTGGACA+AGG | 0.643218 | 1.2:+61035869 | None:intergenic |
| ATTTGAGAAGACAAAGGACA+AGG | 0.678760 | 1.2:-61035593 | MS.gene70804:CDS |
| TGAGATCATTGCTATAAGAG+AGG | 0.679141 | 1.2:-61037903 | MS.gene70804:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTTAACTATACTTTA+CGG | + | chr1.2:61036236-61036255 | None:intergenic | 10.0% |
| !! | TTAATTGGTTAAAATTTATA+CGG | + | chr1.2:61036820-61036839 | None:intergenic | 10.0% |
| !! | AAAAAACACAAAATAACAAA+TGG | + | chr1.2:61037738-61037757 | None:intergenic | 15.0% |
| !! | AAATATAGTTCAAATTTCAT+CGG | - | chr1.2:61038709-61038728 | MS.gene70804:intron | 15.0% |
| !! | ATAAAAAATTGATGTTATAG+CGG | + | chr1.2:61035947-61035966 | None:intergenic | 15.0% |
| !! | ATTGAAAAAATATGATTGAT+TGG | - | chr1.2:61036903-61036922 | MS.gene70804:intron | 15.0% |
| !! | ATTGGATTTAGTAATTATAT+TGG | - | chr1.2:61039611-61039630 | MS.gene70804:intron | 15.0% |
| !! | TAATTGGTTAAAATTTATAC+GGG | + | chr1.2:61036819-61036838 | None:intergenic | 15.0% |
| !! | TAGCTTATTAAAAACATAAA+AGG | - | chr1.2:61036018-61036037 | MS.gene70804:intron | 15.0% |
| !!! | AAATGTGTGATTTTTTTTAA+TGG | + | chr1.2:61037586-61037605 | None:intergenic | 15.0% |
| !!! | GATTACTTTTTTTTTTGAAA+CGG | + | chr1.2:61039120-61039139 | None:intergenic | 15.0% |
| !!! | GTCAAATATTTTTTACAAAT+TGG | - | chr1.2:61037131-61037150 | MS.gene70804:intron | 15.0% |
| !!! | TATTCATTTTTCAAAAATCA+AGG | - | chr1.2:61039453-61039472 | MS.gene70804:intron | 15.0% |
| !!! | TCTAACACATTTAATTTAAT+TGG | + | chr1.2:61036835-61036854 | None:intergenic | 15.0% |
| !!! | TTTAAAATATTAACAAAGTC+AGG | - | chr1.2:61036083-61036102 | MS.gene70804:intron | 15.0% |
| !! | AACAAAATTGAAATACAAAC+AGG | + | chr1.2:61039045-61039064 | None:intergenic | 20.0% |
| !! | AATTCTTTACTTCTTTACTT+TGG | - | chr1.2:61037780-61037799 | MS.gene70804:intron | 20.0% |
| !! | AATTTGAACTATATTTCATG+AGG | + | chr1.2:61038705-61038724 | None:intergenic | 20.0% |
| !! | AGTAAAGAAGTAAAGAATTT+AGG | + | chr1.2:61037779-61037798 | None:intergenic | 20.0% |
| !! | ATGAGTTATCATTTAGATTA+TGG | - | chr1.2:61035715-61035734 | MS.gene70804:CDS | 20.0% |
| !! | ATTATGCTGAAATTTGAAAA+GGG | - | chr1.2:61037095-61037114 | MS.gene70804:intron | 20.0% |
| !! | ATTCCAATTAGTATAACATA+AGG | + | chr1.2:61039340-61039359 | None:intergenic | 20.0% |
| !! | ATTTAGTAATTATATTGGCA+AGG | - | chr1.2:61039616-61039635 | MS.gene70804:intron | 20.0% |
| !! | ATTTGAATAACAAATTGAGA+AGG | - | chr1.2:61039231-61039250 | MS.gene70804:intron | 20.0% |
| !! | GTAAAGAAGTAAAGAATTTA+GGG | + | chr1.2:61037778-61037797 | None:intergenic | 20.0% |
| !! | TAAAAAATTGATGTTATAGC+GGG | + | chr1.2:61035946-61035965 | None:intergenic | 20.0% |
| !! | TAAACAGAAATAATGATATC+TGG | - | chr1.2:61038572-61038591 | MS.gene70804:intron | 20.0% |
| !! | TATTATGCTGAAATTTGAAA+AGG | - | chr1.2:61037094-61037113 | MS.gene70804:intron | 20.0% |
| !! | TTACCTTATGTTATACTAAT+TGG | - | chr1.2:61039334-61039353 | MS.gene70804:intron | 20.0% |
| !! | TTATTACTAATACCAAATTG+TGG | + | chr1.2:61035677-61035696 | None:intergenic | 20.0% |
| !! | TTTAGTAATTATATTGGCAA+GGG | - | chr1.2:61039617-61039636 | MS.gene70804:intron | 20.0% |
| !!! | AATAGTTTGTTAAATGAAAG+AGG | - | chr1.2:61037616-61037635 | MS.gene70804:intron | 20.0% |
| !!! | ATTATGCCAAAGTATTATTT+GGG | + | chr1.2:61038003-61038022 | None:intergenic | 20.0% |
| !!! | CAGATTTTATTATGAACTTT+TGG | + | chr1.2:61037246-61037265 | None:intergenic | 20.0% |
| !!! | GAGCTTTATAATTCAATATT+AGG | + | chr1.2:61036646-61036665 | None:intergenic | 20.0% |
| !!! | TATTATGCCAAAGTATTATT+TGG | + | chr1.2:61038004-61038023 | None:intergenic | 20.0% |
| ! | AAAAAATCAATGTGTCTATG+AGG | - | chr1.2:61038660-61038679 | MS.gene70804:intron | 25.0% |
| ! | AAAAATGAGATCATTCAATC+AGG | + | chr1.2:61035759-61035778 | None:intergenic | 25.0% |
| ! | AGAAATAATGATATCTGGAT+TGG | - | chr1.2:61038577-61038596 | MS.gene70804:intron | 25.0% |
| ! | GTATTATGCAAAATGTATAC+TGG | - | chr1.2:61036980-61036999 | MS.gene70804:intron | 25.0% |
| ! | TCTCAATAACAAGTCAAATA+CGG | - | chr1.2:61036337-61036356 | MS.gene70804:intron | 25.0% |
| ! | TTAAAAGAGTTTGATGTCTT+GGG | + | chr1.2:61036711-61036730 | None:intergenic | 25.0% |
| ! | TTCGAGATAAAAAAGATAGA+TGG | - | chr1.2:61039656-61039675 | MS.gene70804:intron | 25.0% |
| !! | AAATTTTATTAGGCAGAACT+CGG | + | chr1.2:61039095-61039114 | None:intergenic | 25.0% |
| !! | AATACTTAGAAGTACATTTC+AGG | + | chr1.2:61037192-61037211 | None:intergenic | 25.0% |
| !! | CTGACAATTTGTTTATAAGT+GGG | + | chr1.2:61038508-61038527 | None:intergenic | 25.0% |
| !! | TGAAACGGCTAAATTTTATT+AGG | + | chr1.2:61039105-61039124 | None:intergenic | 25.0% |
| !! | TGACAATTTGTTTATAAGTG+GGG | + | chr1.2:61038507-61038526 | None:intergenic | 25.0% |
| !!! | CTTCATATATTATCGCTTTT+TGG | - | chr1.2:61036467-61036486 | MS.gene70804:intron | 25.0% |
| AACTACTACTTGCATTACTA+TGG | - | chr1.2:61036563-61036582 | MS.gene70804:intron | 30.0% | |
| AAGAATTTAGGGAGAAACAA+AGG | + | chr1.2:61037767-61037786 | None:intergenic | 30.0% | |
| ACCATTCAAAGTACAAACAA+CGG | + | chr1.2:61038738-61038757 | None:intergenic | 30.0% | |
| ATGATTGATATGGTTGAATG+AGG | - | chr1.2:61037694-61037713 | MS.gene70804:intron | 30.0% | |
| CCACTTATAAACAAATTGTC+AGG | - | chr1.2:61038506-61038525 | MS.gene70804:intron | 30.0% | |
| CTAAGTGATTAAAAGAGTTG+AGG | - | chr1.2:61037486-61037505 | MS.gene70804:intron | 30.0% | |
| CTCAATAACAAGTCAAATAC+GGG | - | chr1.2:61036338-61036357 | MS.gene70804:intron | 30.0% | |
| GAATAACAAATTGAGAAGGT+TGG | - | chr1.2:61039235-61039254 | MS.gene70804:intron | 30.0% | |
| GACTCATTTAACTATTTCAC+AGG | - | chr1.2:61036958-61036977 | MS.gene70804:intron | 30.0% | |
| GATAACTCATAAAAGTGAAG+TGG | + | chr1.2:61035705-61035724 | None:intergenic | 30.0% | |
| GCAAAACACAAAAAAACAGA+TGG | + | chr1.2:61038826-61038845 | None:intergenic | 30.0% | |
| GTTAAAAGAGTTTGATGTCT+TGG | + | chr1.2:61036712-61036731 | None:intergenic | 30.0% | |
| GTTTCCAACAATGATTGATA+TGG | - | chr1.2:61037684-61037703 | MS.gene70804:intron | 30.0% | |
| TAAACAGCTAAATTGATCTC+CGG | + | chr1.2:61036148-61036167 | None:intergenic | 30.0% | |
| TAATAGCGACTAAACTACTT+TGG | + | chr1.2:61037027-61037046 | None:intergenic | 30.0% | |
| TCAACCATATCAATCATTGT+TGG | + | chr1.2:61037691-61037710 | None:intergenic | 30.0% | |
| TCATTCTTTCTATACCATCA+TGG | - | chr1.2:61036390-61036409 | MS.gene70804:intron | 30.0% | |
| TGATACCATATTAGAAATCG+TGG | - | chr1.2:61038433-61038452 | MS.gene70804:intron | 30.0% | |
| TGATTGATATGGTTGAATGA+GGG | - | chr1.2:61037695-61037714 | MS.gene70804:intron | 30.0% | |
| TGGCATAATATTAGAAATCG+TGG | - | chr1.2:61037800-61037819 | MS.gene70804:intron | 30.0% | |
| TTGTTAAATGAAAGAGGTCT+TGG | - | chr1.2:61037622-61037641 | MS.gene70804:intron | 30.0% | |
| ! | AGTCAGGACTAATTTGAAAT+TGG | - | chr1.2:61036099-61036118 | MS.gene70804:intron | 30.0% |
| ! | CCTGACAATTTGTTTATAAG+TGG | + | chr1.2:61038509-61038528 | None:intergenic | 30.0% |
| ! | GACAATTTGTTTATAAGTGG+GGG | + | chr1.2:61038506-61038525 | None:intergenic | 30.0% |
| ! | TGCTGAATGTTCATTTTGTT+TGG | - | chr1.2:61039272-61039291 | MS.gene70804:intron | 30.0% |
| !! | AGAAGTATTTGAGAAGACAA+AGG | - | chr1.2:61039700-61039719 | MS.gene70804:intron | 30.0% |
| !! | ATATCTGGATTGGTATAATC+TGG | - | chr1.2:61038587-61038606 | MS.gene70804:intron | 30.0% |
| !! | CAAACTCTTTTAACTCAAAC+CGG | - | chr1.2:61036718-61036737 | MS.gene70804:intron | 30.0% |
| !! | CAGCTTTTGTTATGAACTTT+TGG | + | chr1.2:61035802-61035821 | None:intergenic | 30.0% |
| !!! | GAATACATTTTTTGATGCAG+CGG | + | chr1.2:61036319-61036338 | None:intergenic | 30.0% |
| !!! | TCTGTTTTTTTGTGTTTTGC+TGG | - | chr1.2:61038826-61038845 | MS.gene70804:intron | 30.0% |
| ACCGTTGTTTGTACTTTGAA+TGG | - | chr1.2:61038734-61038753 | MS.gene70804:intron | 35.0% | |
| ACTAATTGGAATTTACCTGC+AGG | - | chr1.2:61039348-61039367 | MS.gene70804:intron | 35.0% | |
| ACTTATACTTCTAACCGATG+TGG | - | chr1.2:61037875-61037894 | MS.gene70804:intron | 35.0% | |
| AGTTGTAAGCTGTCATAACA+TGG | - | chr1.2:61035903-61035922 | MS.gene70804:CDS | 35.0% | |
| ATCAAGCAGAGAATGGTTTA+TGG | - | chr1.2:61039563-61039582 | MS.gene70804:intron | 35.0% | |
| ATCATTGTTGGAAACCAAAG+TGG | + | chr1.2:61037679-61037698 | None:intergenic | 35.0% | |
| ATTTGAGAAGACAAAGGACA+AGG | - | chr1.2:61039706-61039725 | MS.gene70804:intron | 35.0% | |
| CAAAAAACAGACTACAGAAG+TGG | + | chr1.2:61038902-61038921 | None:intergenic | 35.0% | |
| CAGATGGTATATGATTCTTC+AGG | + | chr1.2:61039162-61039181 | None:intergenic | 35.0% | |
| CTCAACCACGATTTCTAATA+TGG | + | chr1.2:61038022-61038041 | None:intergenic | 35.0% | |
| CTTATACTTCTAACCGATGT+GGG | - | chr1.2:61037876-61037895 | MS.gene70804:intron | 35.0% | |
| GAACAATGATTGCACCAAAT+GGG | + | chr1.2:61035867-61035886 | None:intergenic | 35.0% | |
| GAACACAGTAAAGAAGGTAA+TGG | + | chr1.2:61036515-61036534 | None:intergenic | 35.0% | |
| GAAGTAGAACACAGTAAAGA+AGG | + | chr1.2:61036521-61036540 | None:intergenic | 35.0% | |
| GTAGAAGCAAAATCAACAAG+AGG | + | chr1.2:61036882-61036901 | None:intergenic | 35.0% | |
| GTTATCAGGTTTCCGTTATT+GGG | + | chr1.2:61038384-61038403 | None:intergenic | 35.0% | |
| GTTTGTACTTTGAATGGTGT+TGG | - | chr1.2:61038740-61038759 | MS.gene70804:intron | 35.0% | |
| TACAAATTGGCGATGATTGT+GGG | - | chr1.2:61037144-61037163 | MS.gene70804:intron | 35.0% | |
| TACTACTTGCATTACTATGG+AGG | - | chr1.2:61036566-61036585 | MS.gene70804:intron | 35.0% | |
| TATTCAAACGATGAACACGT+TGG | - | chr1.2:61036271-61036290 | MS.gene70804:intron | 35.0% | |
| TATTGTGAAGACAAAACGAG+AGG | + | chr1.2:61039492-61039511 | None:intergenic | 35.0% | |
| TCATATACCATCTGCTGTAT+CGG | - | chr1.2:61039168-61039187 | MS.gene70804:intron | 35.0% | |
| TCTTAAATATCACGCCACTT+TGG | - | chr1.2:61037653-61037672 | MS.gene70804:intron | 35.0% | |
| TGAAGCGTGAACATAAATGA+CGG | - | chr1.2:61037944-61037963 | MS.gene70804:CDS | 35.0% | |
| TGAGATCATTGCTATAAGAG+AGG | - | chr1.2:61037396-61037415 | MS.gene70804:intron | 35.0% | |
| TGTTATCAGGTTTCCGTTAT+CGG | + | chr1.2:61037975-61037994 | None:intergenic | 35.0% | |
| TGTTATCAGGTTTCCGTTAT+TGG | + | chr1.2:61037975-61037994 | None:intergenic | 35.0% | |
| TTACAAATTGGCGATGATTG+TGG | - | chr1.2:61037143-61037162 | MS.gene70804:intron | 35.0% | |
| TTAGTATTACCATTAGCAGC+AGG | + | chr1.2:61036436-61036455 | None:intergenic | 35.0% | |
| TTAGTCGCTATTACCATAAG+TGG | - | chr1.2:61037034-61037053 | MS.gene70804:intron | 35.0% | |
| ! | AATAACGGAAACCTGATAAC+AGG | - | chr1.2:61038384-61038403 | MS.gene70804:intron | 35.0% |
| ! | ACATCGGTTAGAAGTATAAG+TGG | + | chr1.2:61037876-61037895 | None:intergenic | 35.0% |
| ! | ATCGGTTAGAAGTATAAGTG+GGG | + | chr1.2:61037874-61037893 | None:intergenic | 35.0% |
| ! | ATCTCAGTATCAGAGAGTTT+TGG | - | chr1.2:61039201-61039220 | MS.gene70804:intron | 35.0% |
| ! | CATCGGTTAGAAGTATAAGT+GGG | + | chr1.2:61037875-61037894 | None:intergenic | 35.0% |
| ! | GTTAGTGTTTTCTCTTTCTC+AGG | + | chr1.2:61037535-61037554 | None:intergenic | 35.0% |
| ! | TATTTTGCACCTACCACTTA+TGG | + | chr1.2:61037050-61037069 | None:intergenic | 35.0% |
| ! | TTTCCATGTTTGGAGTTTGT+AGG | - | chr1.2:61038995-61039014 | MS.gene70804:intron | 35.0% |
| ! | TTTTGTTCCTTTGCGTTCTT+TGG | - | chr1.2:61039058-61039077 | MS.gene70804:intron | 35.0% |
| !! | CTGTTTTGTTGGGTTTTCTT+TGG | - | chr1.2:61038849-61038868 | MS.gene70804:intron | 35.0% |
| !!! | CACTTCTGTAGTCTGTTTTT+TGG | - | chr1.2:61038900-61038919 | MS.gene70804:intron | 35.0% |
| !!! | CAGCTTTTGTTTTCCATGTT+TGG | - | chr1.2:61038985-61039004 | MS.gene70804:intron | 35.0% |
| !!! | GACGTGTTCTGTTTTTTGTT+CGG | - | chr1.2:61039017-61039036 | MS.gene70804:intron | 35.0% |
| AAATGAGTCACTCGTTCTCT+AGG | + | chr1.2:61036947-61036966 | None:intergenic | 40.0% | |
| AGGTGGCCCAAATAATACTT+TGG | - | chr1.2:61037994-61038013 | MS.gene70804:CDS | 40.0% | |
| ATGTGTTAAGAGTCCCACAT+CGG | + | chr1.2:61038543-61038562 | None:intergenic | 40.0% | |
| CCAAATTGTGGAACACACTA+AGG | + | chr1.2:61035665-61035684 | None:intergenic | 40.0% | |
| CCTTAGTGTGTTCCACAATT+TGG | - | chr1.2:61035662-61035681 | MS.gene70804:CDS | 40.0% | |
| CGAACAATGATTGCACCAAA+TGG | + | chr1.2:61035868-61035887 | None:intergenic | 40.0% | |
| CTATAACAACTAGCAAAGCC+TGG | + | chr1.2:61038962-61038981 | None:intergenic | 40.0% | |
| GAACAATCAGTGCACCATAT+GGG | + | chr1.2:61037309-61037328 | None:intergenic | 40.0% | |
| GAAGACAAAGGACAAGGTAA+AGG | - | chr1.2:61039712-61039731 | MS.gene70804:intron | 40.0% | |
| GAAGCGTGAACATAAATGAC+GGG | - | chr1.2:61037945-61037964 | MS.gene70804:CDS | 40.0% | |
| GCATATGAAGCTGTTGAATC+TGG | - | chr1.2:61037274-61037293 | MS.gene70804:intron | 40.0% | |
| GTGTGTTAAGAGTCTCACAT+CGG | + | chr1.2:61038106-61038125 | None:intergenic | 40.0% | |
| GTTATCAGGTTTCCGTTATC+GGG | + | chr1.2:61037974-61037993 | None:intergenic | 40.0% | |
| TACGGAAAAACATGAGTCAG+AGG | + | chr1.2:61036218-61036237 | None:intergenic | 40.0% | |
| TCGCTATTACCATAAGTGGT+AGG | - | chr1.2:61037038-61037057 | MS.gene70804:intron | 40.0% | |
| TGAATAGCACCAAAGCACAT+TGG | + | chr1.2:61039439-61039458 | None:intergenic | 40.0% | |
| ! | AGAGGTTTGGTAAGTTCAAC+CGG | + | chr1.2:61036740-61036759 | None:intergenic | 40.0% |
| ! | GCTGTTGAAGAAGCATACAA+AGG | - | chr1.2:61035818-61035837 | MS.gene70804:intron | 40.0% |
| ! | TCGGTTAGAAGTATAAGTGG+GGG | + | chr1.2:61037873-61037892 | None:intergenic | 40.0% |
| ! | TCTATGAGGTGTTAACTCAG+TGG | - | chr1.2:61038674-61038693 | MS.gene70804:intron | 40.0% |
| ! | TGAAATTGGCTTAGAGAGAC+CGG | - | chr1.2:61036113-61036132 | MS.gene70804:intron | 40.0% |
| !! | AGGTGTTGAATGTGGTGATA+TGG | - | chr1.2:61035838-61035857 | MS.gene70804:intron | 40.0% |
| !! | GATAACGGAAACCTGATAAC+AGG | - | chr1.2:61037974-61037993 | MS.gene70804:CDS | 40.0% |
| !! | GCATACAAAGGTGTTGAATG+TGG | - | chr1.2:61035830-61035849 | MS.gene70804:intron | 40.0% |
| !! | GTTTTGCTGGCTGTTTTGTT+GGG | - | chr1.2:61038839-61038858 | MS.gene70804:intron | 40.0% |
| !! | TGTTTTGCTGGCTGTTTTGT+TGG | - | chr1.2:61038838-61038857 | MS.gene70804:intron | 40.0% |
| AAATTGGCGATGATTGTGGG+AGG | - | chr1.2:61037147-61037166 | MS.gene70804:intron | 45.0% | |
| AACGGAAACCTGATAACAGG+TGG | - | chr1.2:61037977-61037996 | MS.gene70804:CDS | 45.0% | |
| AATTGGCGATGATTGTGGGA+GGG | - | chr1.2:61037148-61037167 | MS.gene70804:intron | 45.0% | |
| AGAATGGTTTATGGAGCCAC+AGG | - | chr1.2:61039572-61039591 | MS.gene70804:intron | 45.0% | |
| AGAGCCTCTTCACGATTCTT+TGG | + | chr1.2:61038414-61038433 | None:intergenic | 45.0% | |
| AGCAGCATCATGTTCCATGA+TGG | + | chr1.2:61036407-61036426 | None:intergenic | 45.0% | |
| AGTACTCTGCTAGAGAGGTT+TGG | + | chr1.2:61036753-61036772 | None:intergenic | 45.0% | |
| ATGATCTCAGCATGAGCAGT+TGG | + | chr1.2:61037385-61037404 | None:intergenic | 45.0% | |
| ATGTTTCCGGAGATAGCTGT+TGG | - | chr1.2:61038774-61038793 | MS.gene70804:intron | 45.0% | |
| CGAACAATCAGTGCACCATA+TGG | + | chr1.2:61037310-61037329 | None:intergenic | 45.0% | |
| CGTCCTACAAACTCCAAACA+TGG | + | chr1.2:61039001-61039020 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr1.2:61037829-61037848 | MS.gene70804:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+TGG | - | chr1.2:61037829-61037848 | MS.gene70804:intron | 45.0% | |
| GAACCTTGTCCAATGTGCTT+TGG | - | chr1.2:61039427-61039446 | MS.gene70804:intron | 45.0% | |
| GAAGCTGTTGAATCTGGTGA+TGG | - | chr1.2:61037280-61037299 | MS.gene70804:intron | 45.0% | |
| GAGCCTCTTCACGATTCTTT+GGG | + | chr1.2:61038413-61038432 | None:intergenic | 45.0% | |
| GGAGAAGCTGCAAGATCAAT+TGG | - | chr1.2:61039593-61039612 | MS.gene70804:intron | 45.0% | |
| GTACATTTCACAGCCAGCAA+GGG | + | chr1.2:61039398-61039417 | None:intergenic | 45.0% | |
| GTGAGTCTCACCACATGATT+TGG | - | chr1.2:61036788-61036807 | MS.gene70804:intron | 45.0% | |
| GTGTGTTAAGAGTCCCACAT+CGG | + | chr1.2:61037892-61037911 | None:intergenic | 45.0% | |
| TAGTCTAGCCTGCTGTGTTA+GGG | - | chr1.2:61038925-61038944 | MS.gene70804:intron | 45.0% | |
| TATCTCCGGAAACATTCCCT+CGG | + | chr1.2:61038769-61038788 | None:intergenic | 45.0% | |
| TATCTGTCCGATACAGCAGA+TGG | + | chr1.2:61039178-61039197 | None:intergenic | 45.0% | |
| TATTTGGGCCACCTGTTATC+AGG | + | chr1.2:61037988-61038007 | None:intergenic | 45.0% | |
| TCTCATTATACCAGCTGCAG+AGG | - | chr1.2:61037213-61037232 | MS.gene70804:intron | 45.0% | |
| TCTGCTGTATCGGACAGATA+TGG | - | chr1.2:61039178-61039197 | MS.gene70804:intron | 45.0% | |
| TGATCTCCGGTTTCTGTAAC+CGG | + | chr1.2:61036135-61036154 | None:intergenic | 45.0% | |
| TGTACATTTCACAGCCAGCA+AGG | + | chr1.2:61039399-61039418 | None:intergenic | 45.0% | |
| TGTTTCCGGAGATAGCTGTT+GGG | - | chr1.2:61038775-61038794 | MS.gene70804:intron | 45.0% | |
| ! | ACCAAAGTACTCTGCTAGAG+AGG | + | chr1.2:61036758-61036777 | None:intergenic | 45.0% |
| ! | ACCTCTCTAGCAGAGTACTT+TGG | - | chr1.2:61036754-61036773 | MS.gene70804:intron | 45.0% |
| ! | AGTCTCACCACATGATTTGG+TGG | - | chr1.2:61036791-61036810 | MS.gene70804:intron | 45.0% |
| ! | GGTGTTGTGATCACTCAATC+TGG | + | chr1.2:61036625-61036644 | None:intergenic | 45.0% |
| !! | ACCTCACAAGCCAGTTTTGT+GGG | + | chr1.2:61038475-61038494 | None:intergenic | 45.0% |
| !! | ATTAGGCAGAACTCGGTGTA+AGG | + | chr1.2:61039088-61039107 | None:intergenic | 45.0% |
| !! | CAGTTTTGTGGGGTTGTGTT+AGG | + | chr1.2:61038464-61038483 | None:intergenic | 45.0% |
| !! | TCTGGTGATGGATACCCATA+TGG | - | chr1.2:61037292-61037311 | MS.gene70804:intron | 45.0% |
| !!! | GTTGGGTTTTCTTTGGAGCA+TGG | - | chr1.2:61038856-61038875 | MS.gene70804:intron | 45.0% |
| ACGGGTACCACCAAATCATG+TGG | + | chr1.2:61036801-61036820 | None:intergenic | 50.0% | |
| AGGCACACCAAAGAACGCAA+AGG | + | chr1.2:61039068-61039087 | None:intergenic | 50.0% | |
| AGGCCAACTTCTAACCGATG+TGG | - | chr1.2:61038526-61038545 | MS.gene70804:intron | 50.0% | |
| ATCTCCGGAAACATTCCCTC+GGG | + | chr1.2:61038768-61038787 | None:intergenic | 50.0% | |
| ATGTGCAATCCTGAGCGTGA+GGG | + | chr1.2:61037916-61037935 | None:intergenic | 50.0% | |
| CCTGCAGGCTTGTAAAAAGC+TGG | - | chr1.2:61039363-61039382 | MS.gene70804:intron | 50.0% | |
| CGCTTCACGCTTCAGATGAT+CGG | + | chr1.2:61038234-61038253 | None:intergenic | 50.0% | |
| CTGGATAACGTTTCCCTTGC+TGG | - | chr1.2:61039382-61039401 | MS.gene70804:intron | 50.0% | |
| GAGAGACCGGTTACAGAAAC+CGG | - | chr1.2:61036126-61036145 | MS.gene70804:intron | 50.0% | |
| GCACCAAAGCACATTGGACA+AGG | + | chr1.2:61039433-61039452 | None:intergenic | 50.0% | |
| GCTTCACGCTTCAGATGATC+GGG | + | chr1.2:61038233-61038252 | None:intergenic | 50.0% | |
| GGAAACCAAAGTGGCCAAAG+TGG | + | chr1.2:61037670-61037689 | None:intergenic | 50.0% | |
| GGCCAACTTCTAACCGATGT+GGG | - | chr1.2:61038527-61038546 | MS.gene70804:intron | 50.0% | |
| GTAGTCTAGCCTGCTGTGTT+AGG | - | chr1.2:61038924-61038943 | MS.gene70804:intron | 50.0% | |
| GTTTCCGGAGATAGCTGTTG+GGG | - | chr1.2:61038776-61038795 | MS.gene70804:intron | 50.0% | |
| TCTTTGGGCCACCTGTTATC+AGG | + | chr1.2:61038398-61038417 | None:intergenic | 50.0% | |
| TGATCTTGCAGCTTCTCCTG+TGG | + | chr1.2:61039591-61039610 | None:intergenic | 50.0% | |
| TGGCCCAAAGAATCGTGAAG+AGG | - | chr1.2:61038407-61038426 | MS.gene70804:intron | 50.0% | |
| TGGTGATATGGACGCCCATT+TGG | - | chr1.2:61035850-61035869 | MS.gene70804:CDS | 50.0% | |
| TTGGGCCACCCGTCATTTAT+CGG | + | chr1.2:61038278-61038297 | None:intergenic | 50.0% | |
| ! | CACCTCACAAGCCAGTTTTG+TGG | + | chr1.2:61038476-61038495 | None:intergenic | 50.0% |
| ! | CCAGCTTTTTACAAGCCTGC+AGG | + | chr1.2:61039366-61039385 | None:intergenic | 50.0% |
| ! | GCGTGAACATAAATGACGGG+TGG | - | chr1.2:61037948-61037967 | MS.gene70804:CDS | 50.0% |
| ! | GTCCCACATCGGTTAGAAGT+TGG | + | chr1.2:61037881-61037900 | None:intergenic | 50.0% |
| ! | TGAATGGTGTTGGAACCCGA+GGG | - | chr1.2:61038750-61038769 | MS.gene70804:intron | 50.0% |
| ! | TTGAATGGTGTTGGAACCCG+AGG | - | chr1.2:61038749-61038768 | MS.gene70804:intron | 50.0% |
| !! | AATGACGGGTGGCCCAATAA+CGG | - | chr1.2:61038281-61038300 | MS.gene70804:intron | 50.0% |
| !! | ACCCGTCGGTTTCCGTTATT+GGG | + | chr1.2:61038296-61038315 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | + | chr1.2:61037842-61037861 | None:intergenic | 50.0% |
| !! | AGTCACTCGTTCTCTAGGAC+AGG | + | chr1.2:61036942-61036961 | None:intergenic | 50.0% |
| !! | CAAAACTGGCTTGTGAGGTG+AGG | - | chr1.2:61038476-61038495 | MS.gene70804:intron | 50.0% |
| !! | CCTCACAAGCCAGTTTTGTG+GGG | + | chr1.2:61038474-61038493 | None:intergenic | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr1.2:61037831-61037850 | None:intergenic | 50.0% |
| !! | GTCACTCGTTCTCTAGGACA+GGG | + | chr1.2:61036941-61036960 | None:intergenic | 50.0% |
| !! | TCACTCGTTCTCTAGGACAG+GGG | + | chr1.2:61036940-61036959 | None:intergenic | 50.0% |
| ACCACATGCCCTAACACAGC+AGG | + | chr1.2:61038936-61038955 | None:intergenic | 55.0% | |
| ACGGGTGGCCCGATAAATGA+CGG | - | chr1.2:61038266-61038285 | MS.gene70804:intron | 55.0% | |
| GATGTGCAATCCTGAGCGTG+AGG | + | chr1.2:61037917-61037936 | None:intergenic | 55.0% | |
| GCAATCCTCACCTCACAAGC+CGG | + | chr1.2:61037851-61037870 | None:intergenic | 55.0% | |
| GCTGCTACTCCTGCTGCTAA+TGG | - | chr1.2:61036424-61036443 | MS.gene70804:intron | 55.0% | |
| GGAACCCGAGGGAATGTTTC+CGG | - | chr1.2:61038761-61038780 | MS.gene70804:intron | 55.0% | |
| GTGTGCAATCCTGAGCGTGA+GGG | + | chr1.2:61038130-61038149 | None:intergenic | 55.0% | |
| GTTAGGGCATGTGGTATGCC+AGG | - | chr1.2:61038941-61038960 | MS.gene70804:intron | 55.0% | |
| TGGGCCACCCGTCATTTATC+GGG | + | chr1.2:61038277-61038296 | None:intergenic | 55.0% | |
| TGGTCTCTATCCTCTGCAGC+TGG | + | chr1.2:61037226-61037245 | None:intergenic | 55.0% | |
| TGTGCAATCCTGAGCGTGAG+GGG | + | chr1.2:61037915-61037934 | None:intergenic | 55.0% | |
| TGTGTGCAATCCTGAGCGTG+AGG | + | chr1.2:61038131-61038150 | None:intergenic | 55.0% | |
| ! | CAATAACGGAAACCGACGGG+TGG | - | chr1.2:61038295-61038314 | MS.gene70804:intron | 55.0% |
| ! | GCCCAATAACGGAAACCGAC+GGG | - | chr1.2:61038292-61038311 | MS.gene70804:intron | 55.0% |
| ! | GCTGCTGCTTCTGCTGCAAA+TGG | - | chr1.2:61035573-61035592 | MS.gene70804:CDS | 55.0% |
| ! | GGCCCAATAACGGAAACCGA+CGG | - | chr1.2:61038291-61038310 | MS.gene70804:intron | 55.0% |
| ! | TCACGCCACTTTGGCCACTT+TGG | - | chr1.2:61037662-61037681 | MS.gene70804:intron | 55.0% |
| !! | AATGACGGGTGGCCCGATAA+CGG | - | chr1.2:61037959-61037978 | MS.gene70804:CDS | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr1.2:61037843-61037862 | MS.gene70804:intron | 55.0% |
| !! | CACCCGTCGGTTTCCGTTAT+TGG | + | chr1.2:61038297-61038316 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | + | chr1.2:61037843-61037862 | None:intergenic | 55.0% |
| !! | CCCCACAAAACTGGCTTGTG+AGG | - | chr1.2:61038471-61038490 | MS.gene70804:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | + | chr1.2:61037841-61037860 | None:intergenic | 55.0% |
| CGGGTGGCCCGATAAATGAC+GGG | - | chr1.2:61038267-61038286 | MS.gene70804:intron | 60.0% | |
| GCCTGCTGTGTTAGGGCATG+TGG | - | chr1.2:61038932-61038951 | MS.gene70804:intron | 60.0% | |
| GGCGATGATTGTGGGAGGGA+GGG | - | chr1.2:61037152-61037171 | MS.gene70804:intron | 60.0% | |
| GTGCAATCCTGAGCGTGAGG+GGG | + | chr1.2:61037914-61037933 | None:intergenic | 60.0% | |
| TAACACACCCCCTCACGCTC+AGG | - | chr1.2:61037904-61037923 | MS.gene70804:CDS | 60.0% | |
| TGGCGATGATTGTGGGAGGG+AGG | - | chr1.2:61037151-61037170 | MS.gene70804:intron | 60.0% | |
| ! | GTGGCCCGATAAATGACGGG+TGG | - | chr1.2:61038270-61038289 | MS.gene70804:intron | 60.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | - | chr1.2:61037838-61037857 | MS.gene70804:intron | 60.0% |
| CAGATGATCGGGCCACCCGT+CGG | + | chr1.2:61038222-61038241 | None:intergenic | 65.0% | |
| CGCGCCCCAACAGCTATCTC+CGG | + | chr1.2:61038783-61038802 | None:intergenic | 65.0% | |
| CGGAGATAGCTGTTGGGGCG+CGG | - | chr1.2:61038781-61038800 | MS.gene70804:intron | 65.0% | |
| GCACACACCCCCTCACGCTC+AGG | - | chr1.2:61038144-61038163 | MS.gene70804:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 61035564 | 61039757 | 61035564 | ID=MS.gene70804 |
| chr1.2 | mRNA | 61035564 | 61039757 | 61035564 | ID=MS.gene70804.t1;Parent=MS.gene70804 |
| chr1.2 | exon | 61039727 | 61039757 | 61039727 | ID=MS.gene70804.t1.exon1;Parent=MS.gene70804.t1 |
| chr1.2 | CDS | 61039727 | 61039757 | 61039727 | ID=cds.MS.gene70804.t1;Parent=MS.gene70804.t1 |
| chr1.2 | exon | 61037904 | 61038094 | 61037904 | ID=MS.gene70804.t1.exon2;Parent=MS.gene70804.t1 |
| chr1.2 | CDS | 61037904 | 61038094 | 61037904 | ID=cds.MS.gene70804.t1;Parent=MS.gene70804.t1 |
| chr1.2 | exon | 61035847 | 61035951 | 61035847 | ID=MS.gene70804.t1.exon3;Parent=MS.gene70804.t1 |
| chr1.2 | CDS | 61035847 | 61035951 | 61035847 | ID=cds.MS.gene70804.t1;Parent=MS.gene70804.t1 |
| chr1.2 | exon | 61035564 | 61035749 | 61035564 | ID=MS.gene70804.t1.exon4;Parent=MS.gene70804.t1 |
| chr1.2 | CDS | 61035564 | 61035749 | 61035564 | ID=cds.MS.gene70804.t1;Parent=MS.gene70804.t1 |
| Gene Sequence |
| Protein sequence |
