AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08184


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08184.t1 MTR_7g086080 98.456 259 4 0 1 259 1 259 0.0 520
MS.gene08184.t1 MTR_8g066460 50.000 254 109 3 1 252 1 238 1.23e-75 231
MS.gene08184.t1 MTR_8g066460 50.000 254 109 3 1 252 17 254 1.96e-75 231
MS.gene08184.t1 MTR_8g105910 40.964 249 129 2 4 252 32 262 2.41e-62 199
MS.gene08184.t1 MTR_1g032860 41.767 249 126 2 4 252 32 261 7.90e-62 197
MS.gene08184.t1 MTR_5g029640 45.669 254 120 3 1 252 1 238 1.05e-61 201
MS.gene08184.t1 MTR_5g029640 49.242 132 67 0 121 252 279 410 3.82e-34 128
MS.gene08184.t1 MTR_5g039130 38.211 246 135 3 6 244 10 245 1.12e-47 159
MS.gene08184.t1 MTR_7g010100 33.992 253 133 6 5 237 7 245 5.48e-34 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08184.t1 AT5G32450 73.180 261 68 2 1 259 1 261 7.25e-136 384
MS.gene08184.t1 AT4G17720 46.825 252 122 2 1 252 1 240 6.88e-68 213
MS.gene08184.t1 AT5G16840 45.749 247 113 3 2 248 4 229 3.42e-66 207
MS.gene08184.t1 AT5G16840 45.749 247 112 3 2 248 4 228 8.91e-66 206
MS.gene08184.t1 AT5G16840 45.565 248 113 3 1 248 1 226 1.01e-65 206
MS.gene08184.t1 AT5G46870 42.912 261 123 2 1 252 1 244 1.11e-64 204
MS.gene08184.t1 AT5G46870 42.912 261 123 2 1 252 1 244 1.11e-64 204
MS.gene08184.t1 AT1G67950 37.607 234 129 2 4 237 29 245 2.99e-52 172
MS.gene08184.t1 AT1G67950 38.034 234 127 2 4 237 29 244 5.61e-52 171
MS.gene08184.t1 AT1G67950 38.034 234 127 2 4 237 30 245 6.36e-52 171
MS.gene08184.t1 AT1G14340 38.494 239 140 3 6 244 9 240 3.40e-43 147
MS.gene08184.t1 AT1G67950 39.487 195 100 2 43 237 9 185 8.00e-41 140
MS.gene08184.t1 AT3G01210 34.583 240 131 5 7 233 9 235 1.48e-36 130
MS.gene08184.t1 AT3G01210 34.583 240 131 5 7 233 9 235 1.48e-36 130

Find 53 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATTCTTCTCATTCTC+TGG 0.285143 7.3:+22707536 MS.gene08184:CDS
AATGTCACAAATGCAGTCTT+TGG 0.286462 7.3:-22708043 None:intergenic
TTTGCTTGTTGCAGAGAATA+TGG 0.318014 7.3:+22708016 MS.gene08184:intron
TGAAATTGCGTTATTGTTAT+CGG 0.324746 7.3:+22708084 MS.gene08184:CDS
AACTAGAGAGAAGTTTAATA+TGG 0.366039 7.3:+22710286 MS.gene08184:CDS
GCAAGGGCTGGAAACGTTGC+TGG 0.377253 7.3:+22710257 MS.gene08184:CDS
GCTGGAACAACATGGTTAAC+TGG 0.389119 7.3:+22710218 MS.gene08184:CDS
GAGAGGAAGTTGAATGATAC+TGG 0.403876 7.3:+22709586 MS.gene08184:CDS
TTGAACACATTCAGATCGTT+AGG 0.424477 7.3:+22707564 MS.gene08184:CDS
TTTAGCAAGGTGGCAAGGGC+TGG 0.431556 7.3:+22710245 MS.gene08184:CDS
TAACGCAATTTCAAGCGCTC+TGG 0.432460 7.3:-22708074 None:intergenic
GTATTTGACGCGGCATCTGC+AGG 0.478678 7.3:-22709125 None:intergenic
CTTTGATGTCAAGTTTGAAA+CGG 0.482047 7.3:-22710309 None:intergenic
AAGTAATTTATGTAGGAAGT+GGG 0.492069 7.3:+22709074 MS.gene08184:intron
CGTTTCAAACTTGACATCAA+AGG 0.502962 7.3:+22710310 MS.gene08184:CDS
CTCTTTCAGGAGGAGAAACC+CGG 0.504189 7.3:+22709289 MS.gene08184:intron
ACTAAGATATACTCTTCCAC+CGG 0.504930 7.3:-22709308 None:intergenic
AACGCAATTTCAAGCGCTCT+GGG 0.507323 7.3:-22708073 None:intergenic
GTTACAACTATGCTGGCAAA+AGG 0.514375 7.3:+22709346 MS.gene08184:CDS
ACTGACCTTTGCAGATGCAT+TGG 0.525594 7.3:-22709434 None:intergenic
AACTATGCTGGCAAAAGGAT+CGG 0.526914 7.3:+22709351 MS.gene08184:CDS
TGTGGCAAACCGTGAGATGC+AGG 0.527957 7.3:+22708983 MS.gene08184:CDS
TGCATTTAGCAAGGTGGCAA+GGG 0.529790 7.3:+22710241 MS.gene08184:CDS
CTATTATCTTTAGTTTAACA+CGG 0.533633 7.3:-22710350 None:intergenic
GTGCATTTAGCAAGGTGGCA+AGG 0.536580 7.3:+22710240 MS.gene08184:CDS
TTTGCCACATAGTTCTCGAC+TGG 0.548888 7.3:-22708969 None:intergenic
AGTAATTTATGTAGGAAGTG+GGG 0.552167 7.3:+22709075 MS.gene08184:intron
TCAAACTTGACATCAAAGGT+TGG 0.552992 7.3:+22710314 MS.gene08184:CDS
GCATGCAGATATGTGACTGC+TGG 0.562534 7.3:+22710200 MS.gene08184:intron
AGATGTGGTTACAACTATGC+TGG 0.563766 7.3:+22709339 MS.gene08184:CDS
AGTATCATTCAACTTCCTCT+CGG 0.584802 7.3:-22709584 None:intergenic
TTGAATATTTCAGACAAGGA+CGG 0.584833 7.3:+22707469 MS.gene08184:intron
GACTGCCAATGCATCTGCAA+AGG 0.597300 7.3:+22709429 MS.gene08184:CDS
AAGTGAAGTCTGTGGATCAG+AGG 0.597757 7.3:+22709521 MS.gene08184:CDS
GTACAGCTACCTGCATCTCA+CGG 0.600081 7.3:-22708992 None:intergenic
GTTAACTGGTGCATTTAGCA+AGG 0.607564 7.3:+22710232 MS.gene08184:CDS
GTAATTTATGTAGGAAGTGG+GGG 0.607927 7.3:+22709076 MS.gene08184:intron
TTCAGATCTAGCTACTGAGA+GGG 0.608323 7.3:+22707508 MS.gene08184:CDS
GATCAGCCGTCAAAACAAGC+AGG 0.610495 7.3:+22709608 MS.gene08184:CDS
CTGACAGAGAAATTGACAGT+TGG 0.610991 7.3:+22709478 MS.gene08184:CDS
CTAAGATATACTCTTCCACC+GGG 0.618426 7.3:-22709307 None:intergenic
TCTTAGTAAAGCACAAGATG+TGG 0.626024 7.3:+22709324 MS.gene08184:CDS
CTTCACTTTCTCATTCACCA+CGG 0.639756 7.3:-22709506 None:intergenic
AACTGGTGCATTTAGCAAGG+TGG 0.655445 7.3:+22710235 MS.gene08184:CDS
TTTCAGATCTAGCTACTGAG+AGG 0.669065 7.3:+22707507 MS.gene08184:CDS
CAGCAATATTTGCAGCCGAG+AGG 0.674375 7.3:+22709569 MS.gene08184:CDS
AAGTCCAGTCGAGAACTATG+TGG 0.688839 7.3:+22708965 MS.gene08184:CDS
ACATGTTTCAGATAAAACAA+TGG 0.699760 7.3:+22709546 MS.gene08184:CDS
GAATGAGAAAGTGAAGTCTG+TGG 0.702365 7.3:+22709513 MS.gene08184:CDS
ATTGACAGTTGGACTCTCCG+TGG 0.704504 7.3:+22709489 MS.gene08184:CDS
TTTCAGGAGGAGAAACCCGG+TGG 0.713949 7.3:+22709292 MS.gene08184:intron
AGATGCCGCGTCAAATACTG+AGG 0.716016 7.3:+22709130 MS.gene08184:CDS
ATGTGACTGCTGGAACAACA+TGG 0.736483 7.3:+22710210 MS.gene08184:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAACAAAAACATAAT+GGG + chr7.3:22707780-22707799 MS.gene08184:intron 10.0%
!! TAAAATAAACAAAAACATAA+TGG + chr7.3:22707779-22707798 MS.gene08184:intron 10.0%
!!! GATTTTATATTAAATTGTTA+TGG + chr7.3:22709687-22709706 MS.gene08184:intron 10.0%
!!! TGAAATTTAAAACAATATTT+GGG + chr7.3:22707902-22707921 MS.gene08184:intron 10.0%
!!! TGTTTTTGTTTATTTTATTT+TGG - chr7.3:22707776-22707795 None:intergenic 10.0%
!!! TTGAAATTTAAAACAATATT+TGG + chr7.3:22707901-22707920 MS.gene08184:intron 10.0%
!! AACTAAGATTAAAAAACAAA+AGG - chr7.3:22707638-22707657 None:intergenic 15.0%
!! ACTAAGATTAAAAAACAAAA+GGG - chr7.3:22707637-22707656 None:intergenic 15.0%
!! ATTAAAATGAAAACTACAAA+TGG + chr7.3:22710014-22710033 MS.gene08184:intron 15.0%
!! CAAAAATAATATACAACATA+GGG - chr7.3:22710156-22710175 None:intergenic 15.0%
!! TCAAAAATAATATACAACAT+AGG - chr7.3:22710157-22710176 None:intergenic 15.0%
!! TTATCAAAAGTAATTTATGT+AGG + chr7.3:22709067-22709086 MS.gene08184:intron 15.0%
!!! AATTTTGAATAAAAACTTGT+AGG + chr7.3:22708196-22708215 MS.gene08184:intron 15.0%
!!! ATTTTGAATAAAAACTTGTA+GGG + chr7.3:22708197-22708216 MS.gene08184:intron 15.0%
!!! TTTGTTTTGAAATTTTTGTT+GGG + chr7.3:22707817-22707836 MS.gene08184:intron 15.0%
!!! TTTTGTTTTGAAATTTTTGT+TGG + chr7.3:22707816-22707835 MS.gene08184:intron 15.0%
!! AATTAAGAGCAATTGATATT+TGG - chr7.3:22709017-22709036 None:intergenic 20.0%
!! ATAAACCACAAATAAATCAT+GGG + chr7.3:22707703-22707722 MS.gene08184:intron 20.0%
!! CTAAGATTAAAAAACAAAAG+GGG - chr7.3:22707636-22707655 None:intergenic 20.0%
!! TATAAACCACAAATAAATCA+TGG + chr7.3:22707702-22707721 MS.gene08184:intron 20.0%
!! TTGCAATTAAAAATGAAAAC+AGG - chr7.3:22709874-22709893 None:intergenic 20.0%
!! TTTAATCTTAGTTCCAATTA+AGG + chr7.3:22707645-22707664 MS.gene08184:intron 20.0%
!!! ATATTTTTTTCGTACCAATT+AGG + chr7.3:22710046-22710065 MS.gene08184:intron 20.0%
!!! GAAATTCTTACATATTGTTT+TGG + chr7.3:22707877-22707896 MS.gene08184:intron 20.0%
!!! GTTCTATTTTTACTCTAATT+TGG + chr7.3:22707416-22707435 MS.gene08184:intron 20.0%
!!! TAATTTGGTTTTTTCTTTCT+TGG + chr7.3:22707431-22707450 MS.gene08184:intron 20.0%
!!! TTGTTTTGAAATTTTTGTTG+GGG + chr7.3:22707818-22707837 MS.gene08184:intron 20.0%
! AAAGTAATTTATGTAGGAAG+TGG + chr7.3:22709073-22709092 MS.gene08184:intron 25.0%
! AAATATTGAAACATGACCAT+TGG - chr7.3:22710072-22710091 None:intergenic 25.0%
! AACTAGAGAGAAGTTTAATA+TGG + chr7.3:22710286-22710305 MS.gene08184:CDS 25.0%
! AAGAACATAGAATCATAGAT+AGG - chr7.3:22708843-22708862 None:intergenic 25.0%
! AAGATTTGTAAATGAAATCG+TGG + chr7.3:22709926-22709945 MS.gene08184:intron 25.0%
! AAGTAATTTATGTAGGAAGT+GGG + chr7.3:22709074-22709093 MS.gene08184:intron 25.0%
! AATGATACATCACATATACA+TGG + chr7.3:22710107-22710126 MS.gene08184:intron 25.0%
! AATGTTCATAACAAGTCAAA+AGG - chr7.3:22708555-22708574 None:intergenic 25.0%
! ACATGTTTCAGATAAAACAA+TGG + chr7.3:22709546-22709565 MS.gene08184:CDS 25.0%
! AGAACATAGAATCATAGATA+GGG - chr7.3:22708842-22708861 None:intergenic 25.0%
! ATCCATCACAAAATTGAAAA+TGG - chr7.3:22708512-22708531 None:intergenic 25.0%
! CAAGAACAAAAAACCTTAAT+TGG - chr7.3:22707661-22707680 None:intergenic 25.0%
! TAAACCACAAATAAATCATG+GGG + chr7.3:22707704-22707723 MS.gene08184:intron 25.0%
! TATGTTAAATTGTTACAGTC+TGG + chr7.3:22709773-22709792 MS.gene08184:intron 25.0%
! TGAAATTGCGTTATTGTTAT+CGG + chr7.3:22708084-22708103 MS.gene08184:CDS 25.0%
! TTTCTTGAATATTTCAGACA+AGG + chr7.3:22707465-22707484 MS.gene08184:intron 25.0%
! TTTGTTCTTGAAGGTAAATT+TGG + chr7.3:22707671-22707690 MS.gene08184:intron 25.0%
!! AAAATGTCTACATTGACTAA+GGG + chr7.3:22708430-22708449 MS.gene08184:intron 25.0%
!! ATGATGACGAAATGAAATTT+AGG + chr7.3:22709822-22709841 MS.gene08184:intron 25.0%
!! GCTTTATTGTCTATATATCA+GGG + chr7.3:22708912-22708931 MS.gene08184:intron 25.0%
!! TAGATTACCTTCTGTTTTAT+GGG - chr7.3:22708389-22708408 None:intergenic 25.0%
!! TCTATGATTCTATGTTCTTT+TGG + chr7.3:22708844-22708863 MS.gene08184:intron 25.0%
!! TGATGACGAAATGAAATTTA+GGG + chr7.3:22709823-22709842 MS.gene08184:intron 25.0%
!! TTAGATTACCTTCTGTTTTA+TGG - chr7.3:22708390-22708409 None:intergenic 25.0%
!! TTCCATTTTCAATTTTGTGA+TGG + chr7.3:22708507-22708526 MS.gene08184:intron 25.0%
!!! AGCTTTATTGTCTATATATC+AGG + chr7.3:22708911-22708930 MS.gene08184:intron 25.0%
!!! ATCTTTTAAAACAAGAAACC+TGG - chr7.3:22709911-22709930 None:intergenic 25.0%
!!! CTATTGTCAAGTTTGATTTT+TGG + chr7.3:22708158-22708177 MS.gene08184:intron 25.0%
!!! TAAGGGTACAAATTTTCATT+TGG + chr7.3:22708447-22708466 MS.gene08184:intron 25.0%
!!! TCAATTTTGTGATGGATAAT+TGG + chr7.3:22708515-22708534 MS.gene08184:intron 25.0%
!!! TCTTTTCAAAAGTTTGTTTG+TGG + chr7.3:22708119-22708138 MS.gene08184:intron 25.0%
!!! TGTTTTGAAATTTTTGTTGG+GGG + chr7.3:22707819-22707838 MS.gene08184:intron 25.0%
!!! TTAAGGTTTTTTGTTCTTGA+AGG + chr7.3:22707662-22707681 MS.gene08184:intron 25.0%
AATTTAGGGGTCTATTTAGT+TGG + chr7.3:22709837-22709856 MS.gene08184:intron 30.0%
AGTAATTTATGTAGGAAGTG+GGG + chr7.3:22709075-22709094 MS.gene08184:intron 30.0%
ATAAGCTGTAAAATGACATC+TGG - chr7.3:22708670-22708689 None:intergenic 30.0%
CCTAATAAACTAAAATCCGA+AGG - chr7.3:22708722-22708741 None:intergenic 30.0%
CGAGTACAAATAAATTCCTT+CGG + chr7.3:22708703-22708722 MS.gene08184:intron 30.0%
CTTTGATGTCAAGTTTGAAA+CGG - chr7.3:22710312-22710331 None:intergenic 30.0%
GAACATAGAATCATAGATAG+GGG - chr7.3:22708841-22708860 None:intergenic 30.0%
GAGAAGTTAAATCCATATGA+TGG + chr7.3:22707979-22707998 MS.gene08184:intron 30.0%
GATGACGAAATGAAATTTAG+GGG + chr7.3:22709824-22709843 MS.gene08184:intron 30.0%
GCTTTATGCTAATATTCATC+TGG + chr7.3:22708741-22708760 MS.gene08184:intron 30.0%
TAAGCTGTAAAATGACATCT+GGG - chr7.3:22708669-22708688 None:intergenic 30.0%
TCTGGTGGTATTATTCAATT+GGG + chr7.3:22709791-22709810 MS.gene08184:intron 30.0%
TGAATTGAAAGAAGTTGAAG+AGG - chr7.3:22707365-22707384 None:intergenic 30.0%
TGTTTCAATATTTCCAGAGT+AGG + chr7.3:22710079-22710098 MS.gene08184:intron 30.0%
TTGAATATTTCAGACAAGGA+CGG + chr7.3:22707469-22707488 MS.gene08184:intron 30.0%
TTGACATGCAGAAAAACTAT+TGG - chr7.3:22708269-22708288 None:intergenic 30.0%
! ATAGTTTTTCTGCATGTCAA+CGG + chr7.3:22708269-22708288 MS.gene08184:intron 30.0%
! CAATGCTCTCTTATAAGTTT+TGG - chr7.3:22708328-22708347 None:intergenic 30.0%
! CAGAAAGTAAGAACTTTTGA+AGG + chr7.3:22708612-22708631 MS.gene08184:intron 30.0%
! GAAAATGTCTACATTGACTA+AGG + chr7.3:22708429-22708448 MS.gene08184:intron 30.0%
! TCTACACACATTTTGTAAAC+AGG + chr7.3:22709972-22709991 MS.gene08184:intron 30.0%
! TTTTCATAATGACCAAAACC+TGG - chr7.3:22708414-22708433 None:intergenic 30.0%
!!! CCTTCGGATTTTAGTTTATT+AGG + chr7.3:22708719-22708738 MS.gene08184:intron 30.0%
!!! TCAAGTTTGATTTTTGGAGT+TGG + chr7.3:22708164-22708183 MS.gene08184:intron 30.0%
!!! TTGATTTTTGGAGTTGGTTT+GGG + chr7.3:22708170-22708189 MS.gene08184:intron 30.0%
!!! TTTGATTTTTGGAGTTGGTT+TGG + chr7.3:22708169-22708188 MS.gene08184:intron 30.0%
AACACCCCATGATTTATTTG+TGG - chr7.3:22707711-22707730 None:intergenic 35.0%
AATGTCACAAATGCAGTCTT+TGG - chr7.3:22708046-22708065 None:intergenic 35.0%
ACTAAGATATACTCTTCCAC+CGG - chr7.3:22709311-22709330 None:intergenic 35.0%
AGTATCATTCAACTTCCTCT+CGG - chr7.3:22709587-22709606 None:intergenic 35.0%
ATAAGCTCAATCGCAAAAAC+AGG - chr7.3:22709252-22709271 None:intergenic 35.0%
CAAAATGTGTGTAGAATCAG+TGG - chr7.3:22709967-22709986 None:intergenic 35.0%
CATGAATTCTTCTCATTCTC+TGG + chr7.3:22707536-22707555 MS.gene08184:CDS 35.0%
CGTTTCAAACTTGACATCAA+AGG + chr7.3:22710310-22710329 MS.gene08184:CDS 35.0%
GTAATTTATGTAGGAAGTGG+GGG + chr7.3:22709076-22709095 MS.gene08184:intron 35.0%
GTCAAATTAATACAGCCACA+AGG - chr7.3:22710134-22710153 None:intergenic 35.0%
GTCTGGTGGTATTATTCAAT+TGG + chr7.3:22709790-22709809 MS.gene08184:intron 35.0%
GTTAAATTGTTACAGTCTGG+TGG + chr7.3:22709776-22709795 MS.gene08184:intron 35.0%
GTTCTTGAAGGTAAATTTGG+AGG + chr7.3:22707674-22707693 MS.gene08184:intron 35.0%
TACTGTACTACATCTCTTTC+AGG + chr7.3:22709276-22709295 MS.gene08184:intron 35.0%
TCAAACTTGACATCAAAGGT+TGG + chr7.3:22710314-22710333 MS.gene08184:CDS 35.0%
TCTTAGTAAAGCACAAGATG+TGG + chr7.3:22709324-22709343 MS.gene08184:CDS 35.0%
TGTTGTAGAAATCATGATCG+TGG - chr7.3:22709215-22709234 None:intergenic 35.0%
TTGAACACATTCAGATCGTT+AGG + chr7.3:22707564-22707583 MS.gene08184:CDS 35.0%
TTGAAGGTAAATTTGGAGGA+GGG + chr7.3:22707678-22707697 MS.gene08184:intron 35.0%
! AACATAATGGGACAGTTACT+AGG + chr7.3:22707792-22707811 MS.gene08184:intron 35.0%
! AGTTCTTTTGACAAGAGAGT+TGG + chr7.3:22709454-22709473 MS.gene08184:CDS 35.0%
! TTTGCTTGTTGCAGAGAATA+TGG + chr7.3:22708016-22708035 MS.gene08184:intron 35.0%
! TTTTACCTCAGTATTTGACG+CGG - chr7.3:22709138-22709157 None:intergenic 35.0%
!! TGTTTTTGCGATTGAGCTTA+TGG + chr7.3:22709251-22709270 MS.gene08184:intron 35.0%
!!! AGTTTTGGTTGTGAAGAAGT+CGG - chr7.3:22708313-22708332 None:intergenic 35.0%
AAAACAAGCAGGTTTGGACT+TGG + chr7.3:22709619-22709638 MS.gene08184:intron 40.0%
AAACAAGCAGGTTTGGACTT+GGG + chr7.3:22709620-22709639 MS.gene08184:intron 40.0%
AACAGAAGGTAATCTAAGCC+AGG + chr7.3:22708393-22708412 MS.gene08184:intron 40.0%
AACTATGCTGGCAAAAGGAT+CGG + chr7.3:22709351-22709370 MS.gene08184:CDS 40.0%
ACACATTCAGATCGTTAGGT+TGG + chr7.3:22707568-22707587 MS.gene08184:intron 40.0%
AGAAGCTCCCATAAAACAGA+AGG + chr7.3:22708379-22708398 MS.gene08184:intron 40.0%
AGATGTGGTTACAACTATGC+TGG + chr7.3:22709339-22709358 MS.gene08184:CDS 40.0%
CAACATGAGCAACCATCATA+TGG - chr7.3:22707994-22708013 None:intergenic 40.0%
CAGATGCTGCAATGAAGATA+AGG - chr7.3:22709658-22709677 None:intergenic 40.0%
CTAAGATATACTCTTCCACC+GGG - chr7.3:22709310-22709329 None:intergenic 40.0%
CTGACAGAGAAATTGACAGT+TGG + chr7.3:22709478-22709497 MS.gene08184:CDS 40.0%
CTTCACTTTCTCATTCACCA+CGG - chr7.3:22709509-22709528 None:intergenic 40.0%
CTTGAAGGTAAATTTGGAGG+AGG + chr7.3:22707677-22707696 MS.gene08184:intron 40.0%
GAATGAGAAAGTGAAGTCTG+TGG + chr7.3:22709513-22709532 MS.gene08184:CDS 40.0%
GAGAGGAAGTTGAATGATAC+TGG + chr7.3:22709586-22709605 MS.gene08184:CDS 40.0%
GTATCATTTCTCACCTACTC+TGG - chr7.3:22710095-22710114 None:intergenic 40.0%
GTTAACTGGTGCATTTAGCA+AGG + chr7.3:22710232-22710251 MS.gene08184:CDS 40.0%
GTTACAACTATGCTGGCAAA+AGG + chr7.3:22709346-22709365 MS.gene08184:CDS 40.0%
TCACATATACATGGACCTTG+TGG + chr7.3:22710116-22710135 MS.gene08184:intron 40.0%
TGTACTACATCTCTTTCAGG+AGG + chr7.3:22709279-22709298 MS.gene08184:intron 40.0%
TGTTGGGGGTTACATATGTA+GGG + chr7.3:22707833-22707852 MS.gene08184:intron 40.0%
TTCAGATCTAGCTACTGAGA+GGG + chr7.3:22707508-22707527 MS.gene08184:CDS 40.0%
TTGTTGGGGGTTACATATGT+AGG + chr7.3:22707832-22707851 MS.gene08184:intron 40.0%
TTTCAGATCTAGCTACTGAG+AGG + chr7.3:22707507-22707526 MS.gene08184:CDS 40.0%
TTTCGTACCAATTAGGCCAA+TGG + chr7.3:22710053-22710072 MS.gene08184:intron 40.0%
! AAAGTTTGTTTGTGGAGCTG+TGG + chr7.3:22708127-22708146 MS.gene08184:intron 40.0%
! AACATGACCATTGGCCTAAT+TGG - chr7.3:22710063-22710082 None:intergenic 40.0%
! AGGTAATCTAAGCCAGGTTT+TGG + chr7.3:22708399-22708418 MS.gene08184:intron 40.0%
!! GCAAAACGCTTATTTTCACC+AGG + chr7.3:22709890-22709909 MS.gene08184:intron 40.0%
!!! TCCAAACCTGCTTGTTTTGA+CGG - chr7.3:22709617-22709636 None:intergenic 40.0%
AACGCAATTTCAAGCGCTCT+GGG - chr7.3:22708076-22708095 None:intergenic 45.0%
AACTGGTGCATTTAGCAAGG+TGG + chr7.3:22710235-22710254 MS.gene08184:CDS 45.0%
AAGTCCAGTCGAGAACTATG+TGG + chr7.3:22708965-22708984 MS.gene08184:CDS 45.0%
AAGTGAAGTCTGTGGATCAG+AGG + chr7.3:22709521-22709540 MS.gene08184:CDS 45.0%
ACTGACCTTTGCAGATGCAT+TGG - chr7.3:22709437-22709456 None:intergenic 45.0%
ATCGTGGTTAACTGCTCATC+AGG - chr7.3:22709199-22709218 None:intergenic 45.0%
ATGTGACTGCTGGAACAACA+TGG + chr7.3:22710210-22710229 MS.gene08184:CDS 45.0%
GCTGGAACAACATGGTTAAC+TGG + chr7.3:22710218-22710237 MS.gene08184:CDS 45.0%
TAACGCAATTTCAAGCGCTC+TGG - chr7.3:22708077-22708096 None:intergenic 45.0%
TGCATTTAGCAAGGTGGCAA+GGG + chr7.3:22710241-22710260 MS.gene08184:CDS 45.0%
TTTGCCACATAGTTCTCGAC+TGG - chr7.3:22708972-22708991 None:intergenic 45.0%
!!! AAAATTTTATATTTGTATTT+TGG - chr7.3:22709162-22709181 None:intergenic 5.0%
AGATGCCGCGTCAAATACTG+AGG + chr7.3:22709130-22709149 MS.gene08184:CDS 50.0%
ATTGACAGTTGGACTCTCCG+TGG + chr7.3:22709489-22709508 MS.gene08184:CDS 50.0%
CAGCAATATTTGCAGCCGAG+AGG + chr7.3:22709569-22709588 MS.gene08184:CDS 50.0%
CTCTTTCAGGAGGAGAAACC+CGG + chr7.3:22709289-22709308 MS.gene08184:intron 50.0%
GACTGCCAATGCATCTGCAA+AGG + chr7.3:22709429-22709448 MS.gene08184:CDS 50.0%
GATCAGCCGTCAAAACAAGC+AGG + chr7.3:22709608-22709627 MS.gene08184:CDS 50.0%
GCATGCAGATATGTGACTGC+TGG + chr7.3:22710200-22710219 MS.gene08184:intron 50.0%
GCCGTCAAAACAAGCAGGTT+TGG + chr7.3:22709613-22709632 MS.gene08184:intron 50.0%
GTACAGCTACCTGCATCTCA+CGG - chr7.3:22708995-22709014 None:intergenic 50.0%
GTGCATTTAGCAAGGTGGCA+AGG + chr7.3:22710240-22710259 MS.gene08184:CDS 50.0%
GTATTTGACGCGGCATCTGC+AGG - chr7.3:22709128-22709147 None:intergenic 55.0%
TGTGGCAAACCGTGAGATGC+AGG + chr7.3:22708983-22709002 MS.gene08184:CDS 55.0%
TTTAGCAAGGTGGCAAGGGC+TGG + chr7.3:22710245-22710264 MS.gene08184:CDS 55.0%
TTTCAGGAGGAGAAACCCGG+TGG + chr7.3:22709292-22709311 MS.gene08184:intron 55.0%
GCAAGGGCTGGAAACGTTGC+TGG + chr7.3:22710257-22710276 MS.gene08184:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 22707350 22710358 22707350 ID=MS.gene08184
chr7.3 mRNA 22707350 22710358 22707350 ID=MS.gene08184.t1;Parent=MS.gene08184
chr7.3 exon 22707350 22707355 22707350 ID=MS.gene08184.t1.exon1;Parent=MS.gene08184.t1
chr7.3 CDS 22707350 22707355 22707350 ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1
chr7.3 exon 22707482 22707585 22707482 ID=MS.gene08184.t1.exon2;Parent=MS.gene08184.t1
chr7.3 CDS 22707482 22707585 22707482 ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1
chr7.3 exon 22708030 22708105 22708030 ID=MS.gene08184.t1.exon3;Parent=MS.gene08184.t1
chr7.3 CDS 22708030 22708105 22708030 ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1
chr7.3 exon 22708933 22709004 22708933 ID=MS.gene08184.t1.exon4;Parent=MS.gene08184.t1
chr7.3 CDS 22708933 22709004 22708933 ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1
chr7.3 exon 22709089 22709151 22709089 ID=MS.gene08184.t1.exon5;Parent=MS.gene08184.t1
chr7.3 CDS 22709089 22709151 22709089 ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1
chr7.3 exon 22709298 22709629 22709298 ID=MS.gene08184.t1.exon6;Parent=MS.gene08184.t1
chr7.3 CDS 22709298 22709629 22709298 ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1
chr7.3 exon 22710208 22710358 22710208 ID=MS.gene08184.t1.exon7;Parent=MS.gene08184.t1
chr7.3 CDS 22710208 22710358 22710208 ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1
Gene Sequence

>MS.gene08184

ATGCAGGTTAAACCTCTTCAACTTCTTTCAATTCACAAAAAAAAGTCATCTTTTTTGTTTTTTCTTGTTCTATTTTTACTCTAATTTGGTTTTTTCTTTCTTGGTTTCTCTCACTTTTCTTGAATATTTCAGACAAGGACGGTTCAAGTGAAGCAACTTTCAGATCTAGCTACTGAGAGGGAGATTCATGAATTCTTCTCATTCTCTGGTGAAATTGAACACATTCAGATCGTTAGGTTGGTTATTTCAATTCAAAAATTCAACTTTTTTATATTTTGATATACCCCTTTTGTTTTTTAATCTTAGTTCCAATTAAGGTTTTTTGTTCTTGAAGGTAAATTTGGAGGAGGGTTATAAACCACAAATAAATCATGGGGTGTTTTTAATTTTGATTTTTGATTGTACAAAATTGTATTAACTAATCCAAAATAAAATAAACAAAAACATAATGGGACAGTTACTAGGTTTTTGTTTTGAAATTTTTGTTGGGGGTTACATATGTAGGGTGTAGTGTAAATTTAGCACTTGAAATTCTTACATATTGTTTTGGATTGAAATTTAAAACAATATTTGGGTTAAATTTAGCACTTGAAACTTGCAGCTTTCTCGCTTTTTTTTCGTGTTTGTTAGAGAAGTTAAATCCATATGATGGTTGCTCATGTTGTGTTTGCTTGTTGCAGAGAATATGGAAAACCAAAGACTGCATTTGTGACATTTAAAGATCCCAGAGCGCTTGAAATTGCGTTATTGTTATCGGTAATGTCTCTTTTCTTTTCAAAAGTTTGTTTGTGGAGCTGTGGTAACTTATCTATTGTCAAGTTTGATTTTTGGAGTTGGTTTGGGTAAAATTTTGAATAAAAACTTGTAGGGAAATGAAGTTGAAATAATCTTATTATGATTATGAGTGTTCAAGTAACCAATAGTTTTTCTGCATGTCAACGGTTTTAGAAGCTCTATTATCCGACTTCTTCACAACCAAAACTTATAAGAGAGCATTGTTTGTTAAGAATTGATTACTTATCTCAATTGAGAAGCTCCCATAAAACAGAAGGTAATCTAAGCCAGGTTTTGGTCATTATGAAAATGTCTACATTGACTAAGGGTACAAATTTTCATTTGGTGTATAATTTATGTTTGTTGTACATGTTAAAAAGTTGTTCCATTTTCAATTTTGTGATGGATAATTGGACACTTAAGTGAATCCTTTTGACTTGTTATGAACATTTAGTTAAGATTGAATTTGAGTTGATCATTTTGATAATCAGAAAGTAAGAACTTTTGAAGGAAACTAAGATTGAAATTCTCAAGAATCTAGTCCCAGATGTCATTTTACAGCTTATTTTGTTTAGATTGCGAGTACAAATAAATTCCTTCGGATTTTAGTTTATTAGGCTTTATGCTAATATTCATCTGGTAGAACAAATTTCTTGCTCTTAAAATTACAGATTAGAGTCTAACTTCTTTTCACAGTAGAACAAAAGCTATTTTCCCCTATCTATGATTCTATGTTCTTTTGGATATGTTTCATTAGTATTATCGAGTCAATTGCTCGTGAGTCTGAAGCTTTATTGTCTATATATCAGGGAGCAACAATAGTAGATCAGATTGTGAGTATAAGTCCAGTCGAGAACTATGTGGCAAACCGTGAGATGCAGGTAGCTGTACCAAATATCAATTGCTCTTAATTAAATGTGTGCATATTTATATAAATAAGTACTTATCAAAAGTAATTTATGTAGGAAGTGGGGGTAGTAGAATATGCTATAAATATTGCTCCTGCAGATGCCGCGTCAAATACTGAGGTAAAAACCAAAATACAAATATAAAATTTTGCATGATCAGTTTACCTGATGAGCAGTTAACCACGATCATGATTTCTACAACAATTCAGATTGTGTTCCTGTTTTTGCGATTGAGCTTATGGTCTACTGTACTACATCTCTTTCAGGAGGAGAAACCCGGTGGAAGAGTATATCTTAGTAAAGCACAAGATGTGGTTACAACTATGCTGGCAAAAGGATCGGCTATAAGACAAGACGCTGTGAACAAAGCTAAAGCATTTGATGAGAAGCATCAGTTGACTGCCAATGCATCTGCAAAGGTCAGTTCTTTTGACAAGAGAGTTGGACTGACAGAGAAATTGACAGTTGGACTCTCCGTGGTGAATGAGAAAGTGAAGTCTGTGGATCAGAGGCTACATGTTTCAGATAAAACAATGGCAGCAATATTTGCAGCCGAGAGGAAGTTGAATGATACTGGATCAGCCGTCAAAACAAGCAGGTTTGGACTTGGGTTGAATATGATACCTTATCTTCATTGCAGCATCTGCATTATGATGATTTTATATTAAATTGTTATGGTTTAGTAGTATTATTCAATTATAATGATGACAAAAAGAAGCAGCATCTGCATTATGATGATTTTATGTTAAATTGTTACAGTCTGGTGGTATTATTCAATTGGGAATATATAATGATGACGAAATGAAATTTAGGGGTCTATTTAGTTGGAGAAAACATTTCCTGTTTTCATTTTTAATTGCAAAACGCTTATTTTCACCAGGTTTCTTGTTTTAAAAGATTTGTAAATGAAATCGTGGAGACAACTGTTTTTTCCACTGATTCTACACACATTTTGTAAACAGGAAATAAAGTGAGTTTCACAATTAAAATGAAAACTACAAATGGAAACATAAAATATTTTTTTCGTACCAATTAGGCCAATGGTCATGTTTCAATATTTCCAGAGTAGGTGAGAAATGATACATCACATATACATGGACCTTGTGGCTGTATTAATTTGACCCTATGTTGTATATTATTTTTGAATGTTAATGCTGATAAAATGTGTGCATGCAGATATGTGACTGCTGGAACAACATGGTTAACTGGTGCATTTAGCAAGGTGGCAAGGGCTGGAAACGTTGCTGGAACTAAAACTAGAGAGAAGTTTAATATGGCCGTTTCAAACTTGACATCAAAGGTTGGATATAAGCTCTTGCCGTGTTAA

Protein sequence

>MS.gene08184.t1

MQTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPRALEIALLLSGATIVDQIVSISPVENYVANREMQEVGVVEYAINIAPADAASNTEEEKPGGRVYLSKAQDVVTTMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVSSFDKRVGLTEKLTVGLSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTTWLTGAFSKVARAGNVAGTKTREKFNMAVSNLTSKVGYKLLPC