Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08184.t1 | XP_003624658.1 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 5.30E-130 | 473.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08184.t1 | Q9LFD5 | 40.9 | 247 | 124 | 3 | 2 | 248 | 4 | 228 | 1.1e-35 | 151.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08184.t1 | Q2HVL4 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 3.8e-130 | 473.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene08184 | 0.813969 | 1.96E-51 | -1.69E-46 |
MS.gene049159 | MS.gene08184 | 0.812852 | 3.44E-51 | -1.69E-46 |
MS.gene049254 | MS.gene08184 | 0.858393 | 8.50E-63 | -1.69E-46 |
MS.gene049404 | MS.gene08184 | 0.834852 | 2.36E-56 | -1.69E-46 |
MS.gene049452 | MS.gene08184 | 0.810207 | 1.29E-50 | -1.69E-46 |
MS.gene049501 | MS.gene08184 | 0.827724 | 1.34E-54 | -1.69E-46 |
MS.gene049850 | MS.gene08184 | 0.807511 | 4.88E-50 | -1.69E-46 |
MS.gene049958 | MS.gene08184 | 0.800763 | 1.24E-48 | -1.69E-46 |
MS.gene049983 | MS.gene08184 | 0.824993 | 5.97E-54 | -1.69E-46 |
MS.gene050026 | MS.gene08184 | 0.801513 | 8.69E-49 | -1.69E-46 |
MS.gene050237 | MS.gene08184 | 0.825062 | 5.75E-54 | -1.69E-46 |
MS.gene050273 | MS.gene08184 | 0.808619 | 2.83E-50 | -1.69E-46 |
MS.gene050750 | MS.gene08184 | 0.802675 | 5.01E-49 | -1.69E-46 |
MS.gene050759 | MS.gene08184 | 0.841478 | 4.64E-58 | -1.69E-46 |
MS.gene050807 | MS.gene08184 | 0.80407 | 2.58E-49 | -1.69E-46 |
MS.gene050826 | MS.gene08184 | 0.823321 | 1.48E-53 | -1.69E-46 |
MS.gene050962 | MS.gene08184 | 0.831025 | 2.11E-55 | -1.69E-46 |
MS.gene051198 | MS.gene08184 | 0.83351 | 5.12E-56 | -1.69E-46 |
MS.gene051279 | MS.gene08184 | 0.821216 | 4.54E-53 | -1.69E-46 |
MS.gene051719 | MS.gene08184 | 0.825798 | 3.85E-54 | -1.69E-46 |
MS.gene051720 | MS.gene08184 | 0.825101 | 5.63E-54 | -1.69E-46 |
MS.gene051744 | MS.gene08184 | 0.816949 | 4.25E-52 | -1.69E-46 |
MS.gene051800 | MS.gene08184 | 0.811327 | 7.40E-51 | -1.69E-46 |
MS.gene052037 | MS.gene08184 | 0.813083 | 3.06E-51 | -1.69E-46 |
MS.gene052459 | MS.gene08184 | 0.804426 | 2.17E-49 | -1.69E-46 |
MS.gene052463 | MS.gene08184 | 0.848515 | 5.84E-60 | -1.69E-46 |
MS.gene052516 | MS.gene08184 | 0.822877 | 1.87E-53 | -1.69E-46 |
MS.gene052519 | MS.gene08184 | 0.820282 | 7.45E-53 | -1.69E-46 |
MS.gene052561 | MS.gene08184 | 0.804895 | 1.73E-49 | -1.69E-46 |
MS.gene052582 | MS.gene08184 | 0.820926 | 5.30E-53 | -1.69E-46 |
MS.gene052584 | MS.gene08184 | 0.816032 | 6.82E-52 | -1.69E-46 |
MS.gene052674 | MS.gene08184 | 0.806547 | 7.80E-50 | -1.69E-46 |
MS.gene052675 | MS.gene08184 | 0.810539 | 1.10E-50 | -1.69E-46 |
MS.gene052677 | MS.gene08184 | 0.810555 | 1.09E-50 | -1.69E-46 |
MS.gene052773 | MS.gene08184 | 0.815895 | 7.31E-52 | -1.69E-46 |
MS.gene052863 | MS.gene08184 | 0.800565 | 1.36E-48 | -1.69E-46 |
MS.gene052896 | MS.gene08184 | 0.809468 | 1.86E-50 | -1.69E-46 |
MS.gene053079 | MS.gene08184 | 0.822385 | 2.44E-53 | -1.69E-46 |
MS.gene053082 | MS.gene08184 | 0.80172 | 7.88E-49 | -1.69E-46 |
MS.gene053166 | MS.gene08184 | 0.826623 | 2.45E-54 | -1.69E-46 |
MS.gene053226 | MS.gene08184 | 0.803492 | 3.40E-49 | -1.69E-46 |
MS.gene05350 | MS.gene08184 | 0.822991 | 1.76E-53 | -1.69E-46 |
MS.gene05415 | MS.gene08184 | 0.834505 | 2.88E-56 | -1.69E-46 |
MS.gene054236 | MS.gene08184 | 0.801104 | 1.05E-48 | -1.69E-46 |
MS.gene05423 | MS.gene08184 | 0.85129 | 9.77E-61 | -1.69E-46 |
MS.gene054291 | MS.gene08184 | -0.82367 | 1.22E-53 | -1.69E-46 |
MS.gene054467 | MS.gene08184 | 0.801698 | 7.96E-49 | -1.69E-46 |
MS.gene054468 | MS.gene08184 | 0.812965 | 3.25E-51 | -1.69E-46 |
MS.gene054479 | MS.gene08184 | 0.813777 | 2.16E-51 | -1.69E-46 |
MS.gene054576 | MS.gene08184 | 0.801414 | 9.11E-49 | -1.69E-46 |
MS.gene05458 | MS.gene08184 | 0.80451 | 2.09E-49 | -1.69E-46 |
MS.gene054651 | MS.gene08184 | 0.853391 | 2.47E-61 | -1.69E-46 |
MS.gene054775 | MS.gene08184 | 0.820881 | 5.43E-53 | -1.69E-46 |
MS.gene055227 | MS.gene08184 | 0.820583 | 6.35E-53 | -1.69E-46 |
MS.gene055228 | MS.gene08184 | 0.827937 | 1.19E-54 | -1.69E-46 |
MS.gene055465 | MS.gene08184 | 0.806484 | 8.04E-50 | -1.69E-46 |
MS.gene055466 | MS.gene08184 | 0.811667 | 6.24E-51 | -1.69E-46 |
MS.gene055513 | MS.gene08184 | 0.833821 | 4.28E-56 | -1.69E-46 |
MS.gene055724 | MS.gene08184 | 0.803508 | 3.37E-49 | -1.69E-46 |
MS.gene055778 | MS.gene08184 | 0.801624 | 8.25E-49 | -1.69E-46 |
MS.gene055818 | MS.gene08184 | 0.822496 | 2.30E-53 | -1.69E-46 |
MS.gene055926 | MS.gene08184 | 0.860611 | 1.83E-63 | -1.69E-46 |
MS.gene05604 | MS.gene08184 | 0.812802 | 3.53E-51 | -1.69E-46 |
MS.gene056173 | MS.gene08184 | 0.815576 | 8.61E-52 | -1.69E-46 |
MS.gene056174 | MS.gene08184 | 0.844982 | 5.39E-59 | -1.69E-46 |
MS.gene056308 | MS.gene08184 | 0.815832 | 7.55E-52 | -1.69E-46 |
MS.gene056366 | MS.gene08184 | 0.819734 | 9.94E-53 | -1.69E-46 |
MS.gene056595 | MS.gene08184 | 0.809715 | 1.65E-50 | -1.69E-46 |
MS.gene056699 | MS.gene08184 | 0.81027 | 1.25E-50 | -1.69E-46 |
MS.gene056779 | MS.gene08184 | 0.82348 | 1.35E-53 | -1.69E-46 |
MS.gene05686 | MS.gene08184 | 0.814443 | 1.54E-51 | -1.69E-46 |
MS.gene05690 | MS.gene08184 | 0.811986 | 5.32E-51 | -1.69E-46 |
MS.gene057208 | MS.gene08184 | 0.812146 | 4.91E-51 | -1.69E-46 |
MS.gene057444 | MS.gene08184 | 0.847029 | 1.50E-59 | -1.69E-46 |
MS.gene057598 | MS.gene08184 | 0.800976 | 1.12E-48 | -1.69E-46 |
MS.gene05761 | MS.gene08184 | 0.809899 | 1.51E-50 | -1.69E-46 |
MS.gene058010 | MS.gene08184 | 0.81855 | 1.85E-52 | -1.69E-46 |
MS.gene058294 | MS.gene08184 | 0.807065 | 6.06E-50 | -1.69E-46 |
MS.gene05847 | MS.gene08184 | 0.812663 | 3.79E-51 | -1.69E-46 |
MS.gene058625 | MS.gene08184 | 0.826988 | 2.01E-54 | -1.69E-46 |
MS.gene058979 | MS.gene08184 | 0.828381 | 9.28E-55 | -1.69E-46 |
MS.gene059272 | MS.gene08184 | 0.821582 | 3.74E-53 | -1.69E-46 |
MS.gene059570 | MS.gene08184 | 0.805052 | 1.61E-49 | -1.69E-46 |
MS.gene059584 | MS.gene08184 | 0.805328 | 1.41E-49 | -1.69E-46 |
MS.gene059625 | MS.gene08184 | 0.810687 | 1.02E-50 | -1.69E-46 |
MS.gene059842 | MS.gene08184 | 0.801859 | 7.38E-49 | -1.69E-46 |
MS.gene059965 | MS.gene08184 | 0.807209 | 5.65E-50 | -1.69E-46 |
MS.gene060011 | MS.gene08184 | 0.817058 | 4.02E-52 | -1.69E-46 |
MS.gene060122 | MS.gene08184 | -0.819515 | 1.12E-52 | -1.69E-46 |
MS.gene060310 | MS.gene08184 | 0.819529 | 1.11E-52 | -1.69E-46 |
MS.gene060322 | MS.gene08184 | 0.819775 | 9.73E-53 | -1.69E-46 |
MS.gene060373 | MS.gene08184 | 0.845087 | 5.05E-59 | -1.69E-46 |
MS.gene06052 | MS.gene08184 | 0.843876 | 1.07E-58 | -1.69E-46 |
MS.gene060802 | MS.gene08184 | 0.802911 | 4.48E-49 | -1.69E-46 |
MS.gene060932 | MS.gene08184 | 0.834574 | 2.77E-56 | -1.69E-46 |
MS.gene061100 | MS.gene08184 | 0.801725 | 7.86E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene97723 | MS.gene08184 | PPI |
MS.gene78939 | MS.gene08184 | PPI |
MS.gene08184 | MS.gene051314 | PPI |
MS.gene08184 | MS.gene71213 | PPI |
MS.gene61014 | MS.gene08184 | PPI |
MS.gene027939 | MS.gene08184 | PPI |
MS.gene009024 | MS.gene08184 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08184.t1 | MTR_7g086080 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 520 |
MS.gene08184.t1 | MTR_8g066460 | 50.000 | 254 | 109 | 3 | 1 | 252 | 1 | 238 | 1.23e-75 | 231 |
MS.gene08184.t1 | MTR_8g066460 | 50.000 | 254 | 109 | 3 | 1 | 252 | 17 | 254 | 1.96e-75 | 231 |
MS.gene08184.t1 | MTR_8g105910 | 40.964 | 249 | 129 | 2 | 4 | 252 | 32 | 262 | 2.41e-62 | 199 |
MS.gene08184.t1 | MTR_1g032860 | 41.767 | 249 | 126 | 2 | 4 | 252 | 32 | 261 | 7.90e-62 | 197 |
MS.gene08184.t1 | MTR_5g029640 | 45.669 | 254 | 120 | 3 | 1 | 252 | 1 | 238 | 1.05e-61 | 201 |
MS.gene08184.t1 | MTR_5g029640 | 49.242 | 132 | 67 | 0 | 121 | 252 | 279 | 410 | 3.82e-34 | 128 |
MS.gene08184.t1 | MTR_5g039130 | 38.211 | 246 | 135 | 3 | 6 | 244 | 10 | 245 | 1.12e-47 | 159 |
MS.gene08184.t1 | MTR_7g010100 | 33.992 | 253 | 133 | 6 | 5 | 237 | 7 | 245 | 5.48e-34 | 124 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08184.t1 | AT5G32450 | 73.180 | 261 | 68 | 2 | 1 | 259 | 1 | 261 | 7.25e-136 | 384 |
MS.gene08184.t1 | AT4G17720 | 46.825 | 252 | 122 | 2 | 1 | 252 | 1 | 240 | 6.88e-68 | 213 |
MS.gene08184.t1 | AT5G16840 | 45.749 | 247 | 113 | 3 | 2 | 248 | 4 | 229 | 3.42e-66 | 207 |
MS.gene08184.t1 | AT5G16840 | 45.749 | 247 | 112 | 3 | 2 | 248 | 4 | 228 | 8.91e-66 | 206 |
MS.gene08184.t1 | AT5G16840 | 45.565 | 248 | 113 | 3 | 1 | 248 | 1 | 226 | 1.01e-65 | 206 |
MS.gene08184.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 1.11e-64 | 204 |
MS.gene08184.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 1.11e-64 | 204 |
MS.gene08184.t1 | AT1G67950 | 37.607 | 234 | 129 | 2 | 4 | 237 | 29 | 245 | 2.99e-52 | 172 |
MS.gene08184.t1 | AT1G67950 | 38.034 | 234 | 127 | 2 | 4 | 237 | 29 | 244 | 5.61e-52 | 171 |
MS.gene08184.t1 | AT1G67950 | 38.034 | 234 | 127 | 2 | 4 | 237 | 30 | 245 | 6.36e-52 | 171 |
MS.gene08184.t1 | AT1G14340 | 38.494 | 239 | 140 | 3 | 6 | 244 | 9 | 240 | 3.40e-43 | 147 |
MS.gene08184.t1 | AT1G67950 | 39.487 | 195 | 100 | 2 | 43 | 237 | 9 | 185 | 8.00e-41 | 140 |
MS.gene08184.t1 | AT3G01210 | 34.583 | 240 | 131 | 5 | 7 | 233 | 9 | 235 | 1.48e-36 | 130 |
MS.gene08184.t1 | AT3G01210 | 34.583 | 240 | 131 | 5 | 7 | 233 | 9 | 235 | 1.48e-36 | 130 |
Find 53 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGAATTCTTCTCATTCTC+TGG | 0.285143 | 7.3:+22707536 | MS.gene08184:CDS |
AATGTCACAAATGCAGTCTT+TGG | 0.286462 | 7.3:-22708043 | None:intergenic |
TTTGCTTGTTGCAGAGAATA+TGG | 0.318014 | 7.3:+22708016 | MS.gene08184:intron |
TGAAATTGCGTTATTGTTAT+CGG | 0.324746 | 7.3:+22708084 | MS.gene08184:CDS |
AACTAGAGAGAAGTTTAATA+TGG | 0.366039 | 7.3:+22710286 | MS.gene08184:CDS |
GCAAGGGCTGGAAACGTTGC+TGG | 0.377253 | 7.3:+22710257 | MS.gene08184:CDS |
GCTGGAACAACATGGTTAAC+TGG | 0.389119 | 7.3:+22710218 | MS.gene08184:CDS |
GAGAGGAAGTTGAATGATAC+TGG | 0.403876 | 7.3:+22709586 | MS.gene08184:CDS |
TTGAACACATTCAGATCGTT+AGG | 0.424477 | 7.3:+22707564 | MS.gene08184:CDS |
TTTAGCAAGGTGGCAAGGGC+TGG | 0.431556 | 7.3:+22710245 | MS.gene08184:CDS |
TAACGCAATTTCAAGCGCTC+TGG | 0.432460 | 7.3:-22708074 | None:intergenic |
GTATTTGACGCGGCATCTGC+AGG | 0.478678 | 7.3:-22709125 | None:intergenic |
CTTTGATGTCAAGTTTGAAA+CGG | 0.482047 | 7.3:-22710309 | None:intergenic |
AAGTAATTTATGTAGGAAGT+GGG | 0.492069 | 7.3:+22709074 | MS.gene08184:intron |
CGTTTCAAACTTGACATCAA+AGG | 0.502962 | 7.3:+22710310 | MS.gene08184:CDS |
CTCTTTCAGGAGGAGAAACC+CGG | 0.504189 | 7.3:+22709289 | MS.gene08184:intron |
ACTAAGATATACTCTTCCAC+CGG | 0.504930 | 7.3:-22709308 | None:intergenic |
AACGCAATTTCAAGCGCTCT+GGG | 0.507323 | 7.3:-22708073 | None:intergenic |
GTTACAACTATGCTGGCAAA+AGG | 0.514375 | 7.3:+22709346 | MS.gene08184:CDS |
ACTGACCTTTGCAGATGCAT+TGG | 0.525594 | 7.3:-22709434 | None:intergenic |
AACTATGCTGGCAAAAGGAT+CGG | 0.526914 | 7.3:+22709351 | MS.gene08184:CDS |
TGTGGCAAACCGTGAGATGC+AGG | 0.527957 | 7.3:+22708983 | MS.gene08184:CDS |
TGCATTTAGCAAGGTGGCAA+GGG | 0.529790 | 7.3:+22710241 | MS.gene08184:CDS |
CTATTATCTTTAGTTTAACA+CGG | 0.533633 | 7.3:-22710350 | None:intergenic |
GTGCATTTAGCAAGGTGGCA+AGG | 0.536580 | 7.3:+22710240 | MS.gene08184:CDS |
TTTGCCACATAGTTCTCGAC+TGG | 0.548888 | 7.3:-22708969 | None:intergenic |
AGTAATTTATGTAGGAAGTG+GGG | 0.552167 | 7.3:+22709075 | MS.gene08184:intron |
TCAAACTTGACATCAAAGGT+TGG | 0.552992 | 7.3:+22710314 | MS.gene08184:CDS |
GCATGCAGATATGTGACTGC+TGG | 0.562534 | 7.3:+22710200 | MS.gene08184:intron |
AGATGTGGTTACAACTATGC+TGG | 0.563766 | 7.3:+22709339 | MS.gene08184:CDS |
AGTATCATTCAACTTCCTCT+CGG | 0.584802 | 7.3:-22709584 | None:intergenic |
TTGAATATTTCAGACAAGGA+CGG | 0.584833 | 7.3:+22707469 | MS.gene08184:intron |
GACTGCCAATGCATCTGCAA+AGG | 0.597300 | 7.3:+22709429 | MS.gene08184:CDS |
AAGTGAAGTCTGTGGATCAG+AGG | 0.597757 | 7.3:+22709521 | MS.gene08184:CDS |
GTACAGCTACCTGCATCTCA+CGG | 0.600081 | 7.3:-22708992 | None:intergenic |
GTTAACTGGTGCATTTAGCA+AGG | 0.607564 | 7.3:+22710232 | MS.gene08184:CDS |
GTAATTTATGTAGGAAGTGG+GGG | 0.607927 | 7.3:+22709076 | MS.gene08184:intron |
TTCAGATCTAGCTACTGAGA+GGG | 0.608323 | 7.3:+22707508 | MS.gene08184:CDS |
GATCAGCCGTCAAAACAAGC+AGG | 0.610495 | 7.3:+22709608 | MS.gene08184:CDS |
CTGACAGAGAAATTGACAGT+TGG | 0.610991 | 7.3:+22709478 | MS.gene08184:CDS |
CTAAGATATACTCTTCCACC+GGG | 0.618426 | 7.3:-22709307 | None:intergenic |
TCTTAGTAAAGCACAAGATG+TGG | 0.626024 | 7.3:+22709324 | MS.gene08184:CDS |
CTTCACTTTCTCATTCACCA+CGG | 0.639756 | 7.3:-22709506 | None:intergenic |
AACTGGTGCATTTAGCAAGG+TGG | 0.655445 | 7.3:+22710235 | MS.gene08184:CDS |
TTTCAGATCTAGCTACTGAG+AGG | 0.669065 | 7.3:+22707507 | MS.gene08184:CDS |
CAGCAATATTTGCAGCCGAG+AGG | 0.674375 | 7.3:+22709569 | MS.gene08184:CDS |
AAGTCCAGTCGAGAACTATG+TGG | 0.688839 | 7.3:+22708965 | MS.gene08184:CDS |
ACATGTTTCAGATAAAACAA+TGG | 0.699760 | 7.3:+22709546 | MS.gene08184:CDS |
GAATGAGAAAGTGAAGTCTG+TGG | 0.702365 | 7.3:+22709513 | MS.gene08184:CDS |
ATTGACAGTTGGACTCTCCG+TGG | 0.704504 | 7.3:+22709489 | MS.gene08184:CDS |
TTTCAGGAGGAGAAACCCGG+TGG | 0.713949 | 7.3:+22709292 | MS.gene08184:intron |
AGATGCCGCGTCAAATACTG+AGG | 0.716016 | 7.3:+22709130 | MS.gene08184:CDS |
ATGTGACTGCTGGAACAACA+TGG | 0.736483 | 7.3:+22710210 | MS.gene08184:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAAACAAAAACATAAT+GGG | + | chr7.3:22707780-22707799 | MS.gene08184:intron | 10.0% |
!! | TAAAATAAACAAAAACATAA+TGG | + | chr7.3:22707779-22707798 | MS.gene08184:intron | 10.0% |
!!! | GATTTTATATTAAATTGTTA+TGG | + | chr7.3:22709687-22709706 | MS.gene08184:intron | 10.0% |
!!! | TGAAATTTAAAACAATATTT+GGG | + | chr7.3:22707902-22707921 | MS.gene08184:intron | 10.0% |
!!! | TGTTTTTGTTTATTTTATTT+TGG | - | chr7.3:22707776-22707795 | None:intergenic | 10.0% |
!!! | TTGAAATTTAAAACAATATT+TGG | + | chr7.3:22707901-22707920 | MS.gene08184:intron | 10.0% |
!! | AACTAAGATTAAAAAACAAA+AGG | - | chr7.3:22707638-22707657 | None:intergenic | 15.0% |
!! | ACTAAGATTAAAAAACAAAA+GGG | - | chr7.3:22707637-22707656 | None:intergenic | 15.0% |
!! | ATTAAAATGAAAACTACAAA+TGG | + | chr7.3:22710014-22710033 | MS.gene08184:intron | 15.0% |
!! | CAAAAATAATATACAACATA+GGG | - | chr7.3:22710156-22710175 | None:intergenic | 15.0% |
!! | TCAAAAATAATATACAACAT+AGG | - | chr7.3:22710157-22710176 | None:intergenic | 15.0% |
!! | TTATCAAAAGTAATTTATGT+AGG | + | chr7.3:22709067-22709086 | MS.gene08184:intron | 15.0% |
!!! | AATTTTGAATAAAAACTTGT+AGG | + | chr7.3:22708196-22708215 | MS.gene08184:intron | 15.0% |
!!! | ATTTTGAATAAAAACTTGTA+GGG | + | chr7.3:22708197-22708216 | MS.gene08184:intron | 15.0% |
!!! | TTTGTTTTGAAATTTTTGTT+GGG | + | chr7.3:22707817-22707836 | MS.gene08184:intron | 15.0% |
!!! | TTTTGTTTTGAAATTTTTGT+TGG | + | chr7.3:22707816-22707835 | MS.gene08184:intron | 15.0% |
!! | AATTAAGAGCAATTGATATT+TGG | - | chr7.3:22709017-22709036 | None:intergenic | 20.0% |
!! | ATAAACCACAAATAAATCAT+GGG | + | chr7.3:22707703-22707722 | MS.gene08184:intron | 20.0% |
!! | CTAAGATTAAAAAACAAAAG+GGG | - | chr7.3:22707636-22707655 | None:intergenic | 20.0% |
!! | TATAAACCACAAATAAATCA+TGG | + | chr7.3:22707702-22707721 | MS.gene08184:intron | 20.0% |
!! | TTGCAATTAAAAATGAAAAC+AGG | - | chr7.3:22709874-22709893 | None:intergenic | 20.0% |
!! | TTTAATCTTAGTTCCAATTA+AGG | + | chr7.3:22707645-22707664 | MS.gene08184:intron | 20.0% |
!!! | ATATTTTTTTCGTACCAATT+AGG | + | chr7.3:22710046-22710065 | MS.gene08184:intron | 20.0% |
!!! | GAAATTCTTACATATTGTTT+TGG | + | chr7.3:22707877-22707896 | MS.gene08184:intron | 20.0% |
!!! | GTTCTATTTTTACTCTAATT+TGG | + | chr7.3:22707416-22707435 | MS.gene08184:intron | 20.0% |
!!! | TAATTTGGTTTTTTCTTTCT+TGG | + | chr7.3:22707431-22707450 | MS.gene08184:intron | 20.0% |
!!! | TTGTTTTGAAATTTTTGTTG+GGG | + | chr7.3:22707818-22707837 | MS.gene08184:intron | 20.0% |
! | AAAGTAATTTATGTAGGAAG+TGG | + | chr7.3:22709073-22709092 | MS.gene08184:intron | 25.0% |
! | AAATATTGAAACATGACCAT+TGG | - | chr7.3:22710072-22710091 | None:intergenic | 25.0% |
! | AACTAGAGAGAAGTTTAATA+TGG | + | chr7.3:22710286-22710305 | MS.gene08184:CDS | 25.0% |
! | AAGAACATAGAATCATAGAT+AGG | - | chr7.3:22708843-22708862 | None:intergenic | 25.0% |
! | AAGATTTGTAAATGAAATCG+TGG | + | chr7.3:22709926-22709945 | MS.gene08184:intron | 25.0% |
! | AAGTAATTTATGTAGGAAGT+GGG | + | chr7.3:22709074-22709093 | MS.gene08184:intron | 25.0% |
! | AATGATACATCACATATACA+TGG | + | chr7.3:22710107-22710126 | MS.gene08184:intron | 25.0% |
! | AATGTTCATAACAAGTCAAA+AGG | - | chr7.3:22708555-22708574 | None:intergenic | 25.0% |
! | ACATGTTTCAGATAAAACAA+TGG | + | chr7.3:22709546-22709565 | MS.gene08184:CDS | 25.0% |
! | AGAACATAGAATCATAGATA+GGG | - | chr7.3:22708842-22708861 | None:intergenic | 25.0% |
! | ATCCATCACAAAATTGAAAA+TGG | - | chr7.3:22708512-22708531 | None:intergenic | 25.0% |
! | CAAGAACAAAAAACCTTAAT+TGG | - | chr7.3:22707661-22707680 | None:intergenic | 25.0% |
! | TAAACCACAAATAAATCATG+GGG | + | chr7.3:22707704-22707723 | MS.gene08184:intron | 25.0% |
! | TATGTTAAATTGTTACAGTC+TGG | + | chr7.3:22709773-22709792 | MS.gene08184:intron | 25.0% |
! | TGAAATTGCGTTATTGTTAT+CGG | + | chr7.3:22708084-22708103 | MS.gene08184:CDS | 25.0% |
! | TTTCTTGAATATTTCAGACA+AGG | + | chr7.3:22707465-22707484 | MS.gene08184:intron | 25.0% |
! | TTTGTTCTTGAAGGTAAATT+TGG | + | chr7.3:22707671-22707690 | MS.gene08184:intron | 25.0% |
!! | AAAATGTCTACATTGACTAA+GGG | + | chr7.3:22708430-22708449 | MS.gene08184:intron | 25.0% |
!! | ATGATGACGAAATGAAATTT+AGG | + | chr7.3:22709822-22709841 | MS.gene08184:intron | 25.0% |
!! | GCTTTATTGTCTATATATCA+GGG | + | chr7.3:22708912-22708931 | MS.gene08184:intron | 25.0% |
!! | TAGATTACCTTCTGTTTTAT+GGG | - | chr7.3:22708389-22708408 | None:intergenic | 25.0% |
!! | TCTATGATTCTATGTTCTTT+TGG | + | chr7.3:22708844-22708863 | MS.gene08184:intron | 25.0% |
!! | TGATGACGAAATGAAATTTA+GGG | + | chr7.3:22709823-22709842 | MS.gene08184:intron | 25.0% |
!! | TTAGATTACCTTCTGTTTTA+TGG | - | chr7.3:22708390-22708409 | None:intergenic | 25.0% |
!! | TTCCATTTTCAATTTTGTGA+TGG | + | chr7.3:22708507-22708526 | MS.gene08184:intron | 25.0% |
!!! | AGCTTTATTGTCTATATATC+AGG | + | chr7.3:22708911-22708930 | MS.gene08184:intron | 25.0% |
!!! | ATCTTTTAAAACAAGAAACC+TGG | - | chr7.3:22709911-22709930 | None:intergenic | 25.0% |
!!! | CTATTGTCAAGTTTGATTTT+TGG | + | chr7.3:22708158-22708177 | MS.gene08184:intron | 25.0% |
!!! | TAAGGGTACAAATTTTCATT+TGG | + | chr7.3:22708447-22708466 | MS.gene08184:intron | 25.0% |
!!! | TCAATTTTGTGATGGATAAT+TGG | + | chr7.3:22708515-22708534 | MS.gene08184:intron | 25.0% |
!!! | TCTTTTCAAAAGTTTGTTTG+TGG | + | chr7.3:22708119-22708138 | MS.gene08184:intron | 25.0% |
!!! | TGTTTTGAAATTTTTGTTGG+GGG | + | chr7.3:22707819-22707838 | MS.gene08184:intron | 25.0% |
!!! | TTAAGGTTTTTTGTTCTTGA+AGG | + | chr7.3:22707662-22707681 | MS.gene08184:intron | 25.0% |
AATTTAGGGGTCTATTTAGT+TGG | + | chr7.3:22709837-22709856 | MS.gene08184:intron | 30.0% | |
AGTAATTTATGTAGGAAGTG+GGG | + | chr7.3:22709075-22709094 | MS.gene08184:intron | 30.0% | |
ATAAGCTGTAAAATGACATC+TGG | - | chr7.3:22708670-22708689 | None:intergenic | 30.0% | |
CCTAATAAACTAAAATCCGA+AGG | - | chr7.3:22708722-22708741 | None:intergenic | 30.0% | |
CGAGTACAAATAAATTCCTT+CGG | + | chr7.3:22708703-22708722 | MS.gene08184:intron | 30.0% | |
CTTTGATGTCAAGTTTGAAA+CGG | - | chr7.3:22710312-22710331 | None:intergenic | 30.0% | |
GAACATAGAATCATAGATAG+GGG | - | chr7.3:22708841-22708860 | None:intergenic | 30.0% | |
GAGAAGTTAAATCCATATGA+TGG | + | chr7.3:22707979-22707998 | MS.gene08184:intron | 30.0% | |
GATGACGAAATGAAATTTAG+GGG | + | chr7.3:22709824-22709843 | MS.gene08184:intron | 30.0% | |
GCTTTATGCTAATATTCATC+TGG | + | chr7.3:22708741-22708760 | MS.gene08184:intron | 30.0% | |
TAAGCTGTAAAATGACATCT+GGG | - | chr7.3:22708669-22708688 | None:intergenic | 30.0% | |
TCTGGTGGTATTATTCAATT+GGG | + | chr7.3:22709791-22709810 | MS.gene08184:intron | 30.0% | |
TGAATTGAAAGAAGTTGAAG+AGG | - | chr7.3:22707365-22707384 | None:intergenic | 30.0% | |
TGTTTCAATATTTCCAGAGT+AGG | + | chr7.3:22710079-22710098 | MS.gene08184:intron | 30.0% | |
TTGAATATTTCAGACAAGGA+CGG | + | chr7.3:22707469-22707488 | MS.gene08184:intron | 30.0% | |
TTGACATGCAGAAAAACTAT+TGG | - | chr7.3:22708269-22708288 | None:intergenic | 30.0% | |
! | ATAGTTTTTCTGCATGTCAA+CGG | + | chr7.3:22708269-22708288 | MS.gene08184:intron | 30.0% |
! | CAATGCTCTCTTATAAGTTT+TGG | - | chr7.3:22708328-22708347 | None:intergenic | 30.0% |
! | CAGAAAGTAAGAACTTTTGA+AGG | + | chr7.3:22708612-22708631 | MS.gene08184:intron | 30.0% |
! | GAAAATGTCTACATTGACTA+AGG | + | chr7.3:22708429-22708448 | MS.gene08184:intron | 30.0% |
! | TCTACACACATTTTGTAAAC+AGG | + | chr7.3:22709972-22709991 | MS.gene08184:intron | 30.0% |
! | TTTTCATAATGACCAAAACC+TGG | - | chr7.3:22708414-22708433 | None:intergenic | 30.0% |
!!! | CCTTCGGATTTTAGTTTATT+AGG | + | chr7.3:22708719-22708738 | MS.gene08184:intron | 30.0% |
!!! | TCAAGTTTGATTTTTGGAGT+TGG | + | chr7.3:22708164-22708183 | MS.gene08184:intron | 30.0% |
!!! | TTGATTTTTGGAGTTGGTTT+GGG | + | chr7.3:22708170-22708189 | MS.gene08184:intron | 30.0% |
!!! | TTTGATTTTTGGAGTTGGTT+TGG | + | chr7.3:22708169-22708188 | MS.gene08184:intron | 30.0% |
AACACCCCATGATTTATTTG+TGG | - | chr7.3:22707711-22707730 | None:intergenic | 35.0% | |
AATGTCACAAATGCAGTCTT+TGG | - | chr7.3:22708046-22708065 | None:intergenic | 35.0% | |
ACTAAGATATACTCTTCCAC+CGG | - | chr7.3:22709311-22709330 | None:intergenic | 35.0% | |
AGTATCATTCAACTTCCTCT+CGG | - | chr7.3:22709587-22709606 | None:intergenic | 35.0% | |
ATAAGCTCAATCGCAAAAAC+AGG | - | chr7.3:22709252-22709271 | None:intergenic | 35.0% | |
CAAAATGTGTGTAGAATCAG+TGG | - | chr7.3:22709967-22709986 | None:intergenic | 35.0% | |
CATGAATTCTTCTCATTCTC+TGG | + | chr7.3:22707536-22707555 | MS.gene08184:CDS | 35.0% | |
CGTTTCAAACTTGACATCAA+AGG | + | chr7.3:22710310-22710329 | MS.gene08184:CDS | 35.0% | |
GTAATTTATGTAGGAAGTGG+GGG | + | chr7.3:22709076-22709095 | MS.gene08184:intron | 35.0% | |
GTCAAATTAATACAGCCACA+AGG | - | chr7.3:22710134-22710153 | None:intergenic | 35.0% | |
GTCTGGTGGTATTATTCAAT+TGG | + | chr7.3:22709790-22709809 | MS.gene08184:intron | 35.0% | |
GTTAAATTGTTACAGTCTGG+TGG | + | chr7.3:22709776-22709795 | MS.gene08184:intron | 35.0% | |
GTTCTTGAAGGTAAATTTGG+AGG | + | chr7.3:22707674-22707693 | MS.gene08184:intron | 35.0% | |
TACTGTACTACATCTCTTTC+AGG | + | chr7.3:22709276-22709295 | MS.gene08184:intron | 35.0% | |
TCAAACTTGACATCAAAGGT+TGG | + | chr7.3:22710314-22710333 | MS.gene08184:CDS | 35.0% | |
TCTTAGTAAAGCACAAGATG+TGG | + | chr7.3:22709324-22709343 | MS.gene08184:CDS | 35.0% | |
TGTTGTAGAAATCATGATCG+TGG | - | chr7.3:22709215-22709234 | None:intergenic | 35.0% | |
TTGAACACATTCAGATCGTT+AGG | + | chr7.3:22707564-22707583 | MS.gene08184:CDS | 35.0% | |
TTGAAGGTAAATTTGGAGGA+GGG | + | chr7.3:22707678-22707697 | MS.gene08184:intron | 35.0% | |
! | AACATAATGGGACAGTTACT+AGG | + | chr7.3:22707792-22707811 | MS.gene08184:intron | 35.0% |
! | AGTTCTTTTGACAAGAGAGT+TGG | + | chr7.3:22709454-22709473 | MS.gene08184:CDS | 35.0% |
! | TTTGCTTGTTGCAGAGAATA+TGG | + | chr7.3:22708016-22708035 | MS.gene08184:intron | 35.0% |
! | TTTTACCTCAGTATTTGACG+CGG | - | chr7.3:22709138-22709157 | None:intergenic | 35.0% |
!! | TGTTTTTGCGATTGAGCTTA+TGG | + | chr7.3:22709251-22709270 | MS.gene08184:intron | 35.0% |
!!! | AGTTTTGGTTGTGAAGAAGT+CGG | - | chr7.3:22708313-22708332 | None:intergenic | 35.0% |
AAAACAAGCAGGTTTGGACT+TGG | + | chr7.3:22709619-22709638 | MS.gene08184:intron | 40.0% | |
AAACAAGCAGGTTTGGACTT+GGG | + | chr7.3:22709620-22709639 | MS.gene08184:intron | 40.0% | |
AACAGAAGGTAATCTAAGCC+AGG | + | chr7.3:22708393-22708412 | MS.gene08184:intron | 40.0% | |
AACTATGCTGGCAAAAGGAT+CGG | + | chr7.3:22709351-22709370 | MS.gene08184:CDS | 40.0% | |
ACACATTCAGATCGTTAGGT+TGG | + | chr7.3:22707568-22707587 | MS.gene08184:intron | 40.0% | |
AGAAGCTCCCATAAAACAGA+AGG | + | chr7.3:22708379-22708398 | MS.gene08184:intron | 40.0% | |
AGATGTGGTTACAACTATGC+TGG | + | chr7.3:22709339-22709358 | MS.gene08184:CDS | 40.0% | |
CAACATGAGCAACCATCATA+TGG | - | chr7.3:22707994-22708013 | None:intergenic | 40.0% | |
CAGATGCTGCAATGAAGATA+AGG | - | chr7.3:22709658-22709677 | None:intergenic | 40.0% | |
CTAAGATATACTCTTCCACC+GGG | - | chr7.3:22709310-22709329 | None:intergenic | 40.0% | |
CTGACAGAGAAATTGACAGT+TGG | + | chr7.3:22709478-22709497 | MS.gene08184:CDS | 40.0% | |
CTTCACTTTCTCATTCACCA+CGG | - | chr7.3:22709509-22709528 | None:intergenic | 40.0% | |
CTTGAAGGTAAATTTGGAGG+AGG | + | chr7.3:22707677-22707696 | MS.gene08184:intron | 40.0% | |
GAATGAGAAAGTGAAGTCTG+TGG | + | chr7.3:22709513-22709532 | MS.gene08184:CDS | 40.0% | |
GAGAGGAAGTTGAATGATAC+TGG | + | chr7.3:22709586-22709605 | MS.gene08184:CDS | 40.0% | |
GTATCATTTCTCACCTACTC+TGG | - | chr7.3:22710095-22710114 | None:intergenic | 40.0% | |
GTTAACTGGTGCATTTAGCA+AGG | + | chr7.3:22710232-22710251 | MS.gene08184:CDS | 40.0% | |
GTTACAACTATGCTGGCAAA+AGG | + | chr7.3:22709346-22709365 | MS.gene08184:CDS | 40.0% | |
TCACATATACATGGACCTTG+TGG | + | chr7.3:22710116-22710135 | MS.gene08184:intron | 40.0% | |
TGTACTACATCTCTTTCAGG+AGG | + | chr7.3:22709279-22709298 | MS.gene08184:intron | 40.0% | |
TGTTGGGGGTTACATATGTA+GGG | + | chr7.3:22707833-22707852 | MS.gene08184:intron | 40.0% | |
TTCAGATCTAGCTACTGAGA+GGG | + | chr7.3:22707508-22707527 | MS.gene08184:CDS | 40.0% | |
TTGTTGGGGGTTACATATGT+AGG | + | chr7.3:22707832-22707851 | MS.gene08184:intron | 40.0% | |
TTTCAGATCTAGCTACTGAG+AGG | + | chr7.3:22707507-22707526 | MS.gene08184:CDS | 40.0% | |
TTTCGTACCAATTAGGCCAA+TGG | + | chr7.3:22710053-22710072 | MS.gene08184:intron | 40.0% | |
! | AAAGTTTGTTTGTGGAGCTG+TGG | + | chr7.3:22708127-22708146 | MS.gene08184:intron | 40.0% |
! | AACATGACCATTGGCCTAAT+TGG | - | chr7.3:22710063-22710082 | None:intergenic | 40.0% |
! | AGGTAATCTAAGCCAGGTTT+TGG | + | chr7.3:22708399-22708418 | MS.gene08184:intron | 40.0% |
!! | GCAAAACGCTTATTTTCACC+AGG | + | chr7.3:22709890-22709909 | MS.gene08184:intron | 40.0% |
!!! | TCCAAACCTGCTTGTTTTGA+CGG | - | chr7.3:22709617-22709636 | None:intergenic | 40.0% |
AACGCAATTTCAAGCGCTCT+GGG | - | chr7.3:22708076-22708095 | None:intergenic | 45.0% | |
AACTGGTGCATTTAGCAAGG+TGG | + | chr7.3:22710235-22710254 | MS.gene08184:CDS | 45.0% | |
AAGTCCAGTCGAGAACTATG+TGG | + | chr7.3:22708965-22708984 | MS.gene08184:CDS | 45.0% | |
AAGTGAAGTCTGTGGATCAG+AGG | + | chr7.3:22709521-22709540 | MS.gene08184:CDS | 45.0% | |
ACTGACCTTTGCAGATGCAT+TGG | - | chr7.3:22709437-22709456 | None:intergenic | 45.0% | |
ATCGTGGTTAACTGCTCATC+AGG | - | chr7.3:22709199-22709218 | None:intergenic | 45.0% | |
ATGTGACTGCTGGAACAACA+TGG | + | chr7.3:22710210-22710229 | MS.gene08184:CDS | 45.0% | |
GCTGGAACAACATGGTTAAC+TGG | + | chr7.3:22710218-22710237 | MS.gene08184:CDS | 45.0% | |
TAACGCAATTTCAAGCGCTC+TGG | - | chr7.3:22708077-22708096 | None:intergenic | 45.0% | |
TGCATTTAGCAAGGTGGCAA+GGG | + | chr7.3:22710241-22710260 | MS.gene08184:CDS | 45.0% | |
TTTGCCACATAGTTCTCGAC+TGG | - | chr7.3:22708972-22708991 | None:intergenic | 45.0% | |
!!! | AAAATTTTATATTTGTATTT+TGG | - | chr7.3:22709162-22709181 | None:intergenic | 5.0% |
AGATGCCGCGTCAAATACTG+AGG | + | chr7.3:22709130-22709149 | MS.gene08184:CDS | 50.0% | |
ATTGACAGTTGGACTCTCCG+TGG | + | chr7.3:22709489-22709508 | MS.gene08184:CDS | 50.0% | |
CAGCAATATTTGCAGCCGAG+AGG | + | chr7.3:22709569-22709588 | MS.gene08184:CDS | 50.0% | |
CTCTTTCAGGAGGAGAAACC+CGG | + | chr7.3:22709289-22709308 | MS.gene08184:intron | 50.0% | |
GACTGCCAATGCATCTGCAA+AGG | + | chr7.3:22709429-22709448 | MS.gene08184:CDS | 50.0% | |
GATCAGCCGTCAAAACAAGC+AGG | + | chr7.3:22709608-22709627 | MS.gene08184:CDS | 50.0% | |
GCATGCAGATATGTGACTGC+TGG | + | chr7.3:22710200-22710219 | MS.gene08184:intron | 50.0% | |
GCCGTCAAAACAAGCAGGTT+TGG | + | chr7.3:22709613-22709632 | MS.gene08184:intron | 50.0% | |
GTACAGCTACCTGCATCTCA+CGG | - | chr7.3:22708995-22709014 | None:intergenic | 50.0% | |
GTGCATTTAGCAAGGTGGCA+AGG | + | chr7.3:22710240-22710259 | MS.gene08184:CDS | 50.0% | |
GTATTTGACGCGGCATCTGC+AGG | - | chr7.3:22709128-22709147 | None:intergenic | 55.0% | |
TGTGGCAAACCGTGAGATGC+AGG | + | chr7.3:22708983-22709002 | MS.gene08184:CDS | 55.0% | |
TTTAGCAAGGTGGCAAGGGC+TGG | + | chr7.3:22710245-22710264 | MS.gene08184:CDS | 55.0% | |
TTTCAGGAGGAGAAACCCGG+TGG | + | chr7.3:22709292-22709311 | MS.gene08184:intron | 55.0% | |
GCAAGGGCTGGAAACGTTGC+TGG | + | chr7.3:22710257-22710276 | MS.gene08184:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 22707350 | 22710358 | 22707350 | ID=MS.gene08184 |
chr7.3 | mRNA | 22707350 | 22710358 | 22707350 | ID=MS.gene08184.t1;Parent=MS.gene08184 |
chr7.3 | exon | 22707350 | 22707355 | 22707350 | ID=MS.gene08184.t1.exon1;Parent=MS.gene08184.t1 |
chr7.3 | CDS | 22707350 | 22707355 | 22707350 | ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1 |
chr7.3 | exon | 22707482 | 22707585 | 22707482 | ID=MS.gene08184.t1.exon2;Parent=MS.gene08184.t1 |
chr7.3 | CDS | 22707482 | 22707585 | 22707482 | ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1 |
chr7.3 | exon | 22708030 | 22708105 | 22708030 | ID=MS.gene08184.t1.exon3;Parent=MS.gene08184.t1 |
chr7.3 | CDS | 22708030 | 22708105 | 22708030 | ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1 |
chr7.3 | exon | 22708933 | 22709004 | 22708933 | ID=MS.gene08184.t1.exon4;Parent=MS.gene08184.t1 |
chr7.3 | CDS | 22708933 | 22709004 | 22708933 | ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1 |
chr7.3 | exon | 22709089 | 22709151 | 22709089 | ID=MS.gene08184.t1.exon5;Parent=MS.gene08184.t1 |
chr7.3 | CDS | 22709089 | 22709151 | 22709089 | ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1 |
chr7.3 | exon | 22709298 | 22709629 | 22709298 | ID=MS.gene08184.t1.exon6;Parent=MS.gene08184.t1 |
chr7.3 | CDS | 22709298 | 22709629 | 22709298 | ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1 |
chr7.3 | exon | 22710208 | 22710358 | 22710208 | ID=MS.gene08184.t1.exon7;Parent=MS.gene08184.t1 |
chr7.3 | CDS | 22710208 | 22710358 | 22710208 | ID=cds.MS.gene08184.t1;Parent=MS.gene08184.t1 |
Gene Sequence |
Protein sequence |