Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41753.t1 | XP_003624658.1 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 4.10E-130 | 474.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41753.t1 | Q9LFD5 | 40.9 | 247 | 124 | 3 | 2 | 248 | 4 | 228 | 8.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41753.t1 | Q2HVL4 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 2.9e-130 | 474.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41753 | MS.gene97723 | PPI |
| MS.gene41753 | MS.gene71213 | PPI |
| MS.gene41753 | MS.gene009024 | PPI |
| MS.gene41753 | MS.gene051314 | PPI |
| MS.gene41753 | MS.gene78939 | PPI |
| MS.gene41753 | MS.gene61014 | PPI |
| MS.gene027939 | MS.gene41753 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41753.t1 | MTR_7g086080 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 519 |
| MS.gene41753.t1 | MTR_8g066460 | 49.606 | 254 | 110 | 3 | 1 | 252 | 1 | 238 | 1.37e-74 | 229 |
| MS.gene41753.t1 | MTR_8g066460 | 49.606 | 254 | 110 | 3 | 1 | 252 | 17 | 254 | 1.70e-74 | 229 |
| MS.gene41753.t1 | MTR_5g029640 | 46.063 | 254 | 119 | 3 | 1 | 252 | 1 | 238 | 1.40e-62 | 204 |
| MS.gene41753.t1 | MTR_5g029640 | 49.242 | 132 | 67 | 0 | 121 | 252 | 279 | 410 | 4.93e-34 | 128 |
| MS.gene41753.t1 | MTR_8g105910 | 40.964 | 249 | 129 | 2 | 4 | 252 | 32 | 262 | 7.81e-62 | 197 |
| MS.gene41753.t1 | MTR_1g032860 | 41.365 | 249 | 127 | 2 | 4 | 252 | 32 | 261 | 2.04e-60 | 194 |
| MS.gene41753.t1 | MTR_5g039130 | 38.710 | 248 | 131 | 5 | 6 | 244 | 10 | 245 | 1.98e-47 | 158 |
| MS.gene41753.t1 | MTR_7g010100 | 33.597 | 253 | 134 | 7 | 5 | 237 | 7 | 245 | 1.47e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41753.t1 | AT5G32450 | 73.180 | 261 | 68 | 2 | 1 | 259 | 1 | 261 | 9.13e-136 | 384 |
| MS.gene41753.t1 | AT4G17720 | 46.484 | 256 | 117 | 2 | 1 | 252 | 1 | 240 | 3.33e-68 | 214 |
| MS.gene41753.t1 | AT5G16840 | 45.749 | 247 | 113 | 3 | 2 | 248 | 4 | 229 | 3.94e-66 | 207 |
| MS.gene41753.t1 | AT5G16840 | 45.749 | 247 | 112 | 3 | 2 | 248 | 4 | 228 | 7.91e-66 | 206 |
| MS.gene41753.t1 | AT5G16840 | 45.565 | 248 | 113 | 3 | 1 | 248 | 1 | 226 | 1.14e-65 | 205 |
| MS.gene41753.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 1.22e-64 | 204 |
| MS.gene41753.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 1.22e-64 | 204 |
| MS.gene41753.t1 | AT1G67950 | 38.034 | 234 | 128 | 2 | 4 | 237 | 29 | 245 | 2.54e-53 | 174 |
| MS.gene41753.t1 | AT1G67950 | 38.462 | 234 | 126 | 2 | 4 | 237 | 29 | 244 | 5.25e-53 | 174 |
| MS.gene41753.t1 | AT1G67950 | 38.462 | 234 | 126 | 2 | 4 | 237 | 30 | 245 | 6.48e-53 | 173 |
| MS.gene41753.t1 | AT1G14340 | 38.494 | 239 | 140 | 3 | 6 | 244 | 9 | 240 | 3.06e-42 | 145 |
| MS.gene41753.t1 | AT1G67950 | 40.000 | 195 | 99 | 2 | 43 | 237 | 9 | 185 | 6.92e-42 | 143 |
| MS.gene41753.t1 | AT3G01210 | 35.000 | 240 | 130 | 5 | 7 | 233 | 9 | 235 | 1.31e-37 | 133 |
| MS.gene41753.t1 | AT3G01210 | 35.000 | 240 | 130 | 5 | 7 | 233 | 9 | 235 | 1.31e-37 | 133 |
Find 54 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATTCTTCTCATTCTC+TGG | 0.285143 | 7.4:+21498504 | MS.gene41753:CDS |
| AATGTCACAAATGCAGTCTT+TGG | 0.286462 | 7.4:-21499008 | None:intergenic |
| TTTGCTTGTTGCAGAGAATA+TGG | 0.318014 | 7.4:+21498981 | MS.gene41753:intron |
| GTATTTGACGCGGCATCTTC+AGG | 0.323691 | 7.4:-21500090 | None:intergenic |
| TGAAATTGCGTTATTGTTAT+CGG | 0.324746 | 7.4:+21499049 | MS.gene41753:CDS |
| AACTAGAGAGAAGTTTAATA+TGG | 0.366039 | 7.4:+21501257 | MS.gene41753:CDS |
| GCAAGGGCTGGAAACGTTGC+TGG | 0.377253 | 7.4:+21501228 | MS.gene41753:CDS |
| GCTGGAACAACATGGTTAAC+TGG | 0.389119 | 7.4:+21501189 | MS.gene41753:CDS |
| GAGAGGAAGTTGAATGATAC+TGG | 0.403876 | 7.4:+21500551 | MS.gene41753:CDS |
| TTTAGCAAGGTGGCAAGGGC+TGG | 0.431556 | 7.4:+21501216 | MS.gene41753:CDS |
| TAACGCAATTTCAAGCGCTC+TGG | 0.432460 | 7.4:-21499039 | None:intergenic |
| TTGAACACATTCAGATCGTT+GGG | 0.448882 | 7.4:+21498532 | MS.gene41753:CDS |
| ATTGAACACATTCAGATCGT+TGG | 0.456764 | 7.4:+21498531 | MS.gene41753:CDS |
| CTTTGATGTCAAGTTTGAAA+CGG | 0.482047 | 7.4:-21501280 | None:intergenic |
| AAGTAATTTATGTAGGAAGT+GGG | 0.492069 | 7.4:+21500039 | MS.gene41753:intron |
| CGTTTCAAACTTGACATCAA+AGG | 0.502962 | 7.4:+21501281 | MS.gene41753:CDS |
| CTCTTTCAGGAGGAGAAACC+CGG | 0.504189 | 7.4:+21500254 | MS.gene41753:intron |
| ACTAAGATATACTCTTCCAC+CGG | 0.504930 | 7.4:-21500273 | None:intergenic |
| AACGCAATTTCAAGCGCTCT+GGG | 0.507323 | 7.4:-21499038 | None:intergenic |
| GTTACAACTATGCTGGCAAA+AGG | 0.514375 | 7.4:+21500311 | MS.gene41753:CDS |
| ACTGACCTTTGCAGATGCAT+TGG | 0.525594 | 7.4:-21500399 | None:intergenic |
| TGTGGCAAACCGTGAGATGC+AGG | 0.527957 | 7.4:+21499948 | MS.gene41753:CDS |
| AACTATGCTGGCAAAAGGAT+CGG | 0.528169 | 7.4:+21500316 | MS.gene41753:CDS |
| TGCATTTAGCAAGGTGGCAA+GGG | 0.529790 | 7.4:+21501212 | MS.gene41753:CDS |
| CTATTATCTTTAGTTTAACA+CGG | 0.533633 | 7.4:-21501321 | None:intergenic |
| GTGCATTTAGCAAGGTGGCA+AGG | 0.536580 | 7.4:+21501211 | MS.gene41753:CDS |
| TTTGCCACATAGTTCTCGAC+TGG | 0.548888 | 7.4:-21499934 | None:intergenic |
| AGTAATTTATGTAGGAAGTG+GGG | 0.552167 | 7.4:+21500040 | MS.gene41753:intron |
| TCAAACTTGACATCAAAGGT+TGG | 0.552992 | 7.4:+21501285 | MS.gene41753:CDS |
| GCATGCAGATATGTGACTGC+TGG | 0.562534 | 7.4:+21501171 | MS.gene41753:intron |
| AGATGTGGTTACAACTATGC+TGG | 0.563766 | 7.4:+21500304 | MS.gene41753:CDS |
| AGTATCATTCAACTTCCTCT+CGG | 0.584802 | 7.4:-21500549 | None:intergenic |
| TTGAATATTTCAGACAAGGA+CGG | 0.584833 | 7.4:+21498437 | MS.gene41753:intron |
| GACTGCCAATGCATCTGCAA+AGG | 0.597300 | 7.4:+21500394 | MS.gene41753:CDS |
| AAGTGAAGTCTGTGGATCAG+AGG | 0.597757 | 7.4:+21500486 | MS.gene41753:CDS |
| GTACAGCTACCTGCATCTCA+CGG | 0.600081 | 7.4:-21499957 | None:intergenic |
| GTTAACTGGTGCATTTAGCA+AGG | 0.607564 | 7.4:+21501203 | MS.gene41753:CDS |
| GTAATTTATGTAGGAAGTGG+GGG | 0.607927 | 7.4:+21500041 | MS.gene41753:intron |
| TTCAGATCTAGCTACTGAGA+GGG | 0.608323 | 7.4:+21498476 | MS.gene41753:CDS |
| GATCAGCCGTCAAAACAAGC+AGG | 0.610495 | 7.4:+21500573 | MS.gene41753:CDS |
| CTGACAGAGAAATTGACAGT+TGG | 0.610991 | 7.4:+21500443 | MS.gene41753:CDS |
| CTAAGATATACTCTTCCACC+GGG | 0.618426 | 7.4:-21500272 | None:intergenic |
| TCTTAGTAAAGCACAAGATG+TGG | 0.626024 | 7.4:+21500289 | MS.gene41753:CDS |
| CTTCACTTTCTCATTCACCA+CGG | 0.639756 | 7.4:-21500471 | None:intergenic |
| AACTGGTGCATTTAGCAAGG+TGG | 0.655445 | 7.4:+21501206 | MS.gene41753:CDS |
| TTTCAGATCTAGCTACTGAG+AGG | 0.669065 | 7.4:+21498475 | MS.gene41753:CDS |
| CAGCAATATTTGCAGCCGAG+AGG | 0.674375 | 7.4:+21500534 | MS.gene41753:CDS |
| AAGTCCAGTCGAGAACTATG+TGG | 0.688839 | 7.4:+21499930 | MS.gene41753:CDS |
| ACATGTTTCAGATAAAACAA+TGG | 0.699760 | 7.4:+21500511 | MS.gene41753:CDS |
| GAATGAGAAAGTGAAGTCTG+TGG | 0.702365 | 7.4:+21500478 | MS.gene41753:CDS |
| ATTGACAGTTGGACTCTCCG+TGG | 0.704504 | 7.4:+21500454 | MS.gene41753:CDS |
| TTTCAGGAGGAGAAACCCGG+TGG | 0.713949 | 7.4:+21500257 | MS.gene41753:intron |
| AGATGCCGCGTCAAATACTG+AGG | 0.716016 | 7.4:+21500095 | MS.gene41753:CDS |
| ATGTGACTGCTGGAACAACA+TGG | 0.736483 | 7.4:+21501181 | MS.gene41753:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAACAAAAACATAAT+GGG | + | chr7.4:21498749-21498768 | MS.gene41753:intron | 10.0% |
| !! | ACTAAAATTAAAAAACAAAA+GGG | - | chr7.4:21498606-21498625 | None:intergenic | 10.0% |
| !! | TAAAATAAACAAAAACATAA+TGG | + | chr7.4:21498748-21498767 | MS.gene41753:intron | 10.0% |
| !!! | AAAATTTTATATTCGTATTT+TGG | - | chr7.4:21500127-21500146 | None:intergenic | 10.0% |
| !!! | GATTTTATATTAAATTGTTA+TGG | + | chr7.4:21500656-21500675 | MS.gene41753:intron | 10.0% |
| !!! | TGTTTTTGTTTATTTTATTT+TGG | - | chr7.4:21498745-21498764 | None:intergenic | 10.0% |
| !! | ATTAAAATGAAAACTAGAAA+TGG | + | chr7.4:21500984-21501003 | MS.gene41753:intron | 15.0% |
| !! | CAAAAATAATATACAACATA+GGG | - | chr7.4:21501127-21501146 | None:intergenic | 15.0% |
| !! | CACTAAAATTAAAAAACAAA+AGG | - | chr7.4:21498607-21498626 | None:intergenic | 15.0% |
| !! | CTAAAATTAAAAAACAAAAG+GGG | - | chr7.4:21498605-21498624 | None:intergenic | 15.0% |
| !! | TCAAAAATAATATACAACAT+AGG | - | chr7.4:21501128-21501147 | None:intergenic | 15.0% |
| !! | TTATCAAAAGTAATTTATGT+AGG | + | chr7.4:21500032-21500051 | MS.gene41753:intron | 15.0% |
| !!! | AATTTTGAATAAAAACTTGT+AGG | + | chr7.4:21499161-21499180 | MS.gene41753:intron | 15.0% |
| !!! | ATTTTGAATAAAAACTTGTA+GGG | + | chr7.4:21499162-21499181 | MS.gene41753:intron | 15.0% |
| !!! | TGAAATTTAAAACAATATGT+GGG | + | chr7.4:21498871-21498890 | MS.gene41753:intron | 15.0% |
| !!! | TTGAAATTTAAAACAATATG+TGG | + | chr7.4:21498870-21498889 | MS.gene41753:intron | 15.0% |
| !!! | TTTGTTTTGAAATTTTTGTT+GGG | + | chr7.4:21498786-21498805 | MS.gene41753:intron | 15.0% |
| !!! | TTTTGTTTTGAAATTTTTGT+TGG | + | chr7.4:21498785-21498804 | MS.gene41753:intron | 15.0% |
| !! | AATTAAGAGCAATTGATATT+TGG | - | chr7.4:21499982-21500001 | None:intergenic | 20.0% |
| !! | TATGAACATTTAGTTAAGAT+TGG | + | chr7.4:21499530-21499549 | MS.gene41753:intron | 20.0% |
| !! | TGCAATTAAAAAATGAAAAC+AGG | - | chr7.4:21500843-21500862 | None:intergenic | 20.0% |
| !!! | TAATTTGGTTTTTTCTTTCT+GGG | + | chr7.4:21498399-21498418 | MS.gene41753:intron | 20.0% |
| !!! | TATTTTTTTTCGTACCAATT+AGG | + | chr7.4:21501017-21501036 | MS.gene41753:intron | 20.0% |
| !!! | TTAATTTGGTTTTTTCTTTC+TGG | + | chr7.4:21498398-21498417 | MS.gene41753:intron | 20.0% |
| !!! | TTGTTTTGAAATTTTTGTTG+GGG | + | chr7.4:21498787-21498806 | MS.gene41753:intron | 20.0% |
| !!! | TTTAATTTTAGTGCCAATTA+AGG | + | chr7.4:21498614-21498633 | MS.gene41753:intron | 20.0% |
| ! | AAAGTAATTTATGTAGGAAG+TGG | + | chr7.4:21500038-21500057 | MS.gene41753:intron | 25.0% |
| ! | AAATATTGAAACATGACCAT+TGG | - | chr7.4:21501043-21501062 | None:intergenic | 25.0% |
| ! | AACTAGAGAGAAGTTTAATA+TGG | + | chr7.4:21501257-21501276 | MS.gene41753:CDS | 25.0% |
| ! | AAGATTTGTAAATGAAATCG+TGG | + | chr7.4:21500896-21500915 | MS.gene41753:intron | 25.0% |
| ! | AAGTAATTTATGTAGGAAGT+GGG | + | chr7.4:21500039-21500058 | MS.gene41753:intron | 25.0% |
| ! | AATGATACATCACATATACA+TGG | + | chr7.4:21501078-21501097 | MS.gene41753:intron | 25.0% |
| ! | AATGTTCATAACAAGTCAAA+AGG | - | chr7.4:21499520-21499539 | None:intergenic | 25.0% |
| ! | ACATGTTTCAGATAAAACAA+TGG | + | chr7.4:21500511-21500530 | MS.gene41753:CDS | 25.0% |
| ! | ATCCATCACAAAATTGAAAA+TGG | - | chr7.4:21499477-21499496 | None:intergenic | 25.0% |
| ! | CAAGAACAAAAAACCTTAAT+TGG | - | chr7.4:21498630-21498649 | None:intergenic | 25.0% |
| ! | GAGTACAAATAAATTCCTTT+GGG | + | chr7.4:21499669-21499688 | MS.gene41753:intron | 25.0% |
| ! | GTAAACCACAAATAAATCAT+GGG | + | chr7.4:21498672-21498691 | MS.gene41753:intron | 25.0% |
| ! | GTTCTAACTTGACTTTAATT+TGG | + | chr7.4:21498384-21498403 | MS.gene41753:intron | 25.0% |
| ! | TAAACCACAAATAAATCATG+GGG | + | chr7.4:21498673-21498692 | MS.gene41753:intron | 25.0% |
| ! | TATGTTAAATTGTTACAGTC+TGG | + | chr7.4:21500742-21500761 | MS.gene41753:intron | 25.0% |
| ! | TGAAATTGCGTTATTGTTAT+CGG | + | chr7.4:21499049-21499068 | MS.gene41753:CDS | 25.0% |
| ! | TGTAAACCACAAATAAATCA+TGG | + | chr7.4:21498671-21498690 | MS.gene41753:intron | 25.0% |
| ! | TTTCTTGAATATTTCAGACA+AGG | + | chr7.4:21498433-21498452 | MS.gene41753:intron | 25.0% |
| ! | TTTGTTCTTGAAGGTAAATT+TGG | + | chr7.4:21498640-21498659 | MS.gene41753:intron | 25.0% |
| !! | AAAATGTCTACATTGACTAA+GGG | + | chr7.4:21499395-21499414 | MS.gene41753:intron | 25.0% |
| !! | ATGATGACGAAATGAAATTT+AGG | + | chr7.4:21500791-21500810 | MS.gene41753:intron | 25.0% |
| !! | GAAATTCTTGCATATTGTTT+TGG | + | chr7.4:21498846-21498865 | MS.gene41753:intron | 25.0% |
| !! | GCTTTATTGTCTATATATCA+GGG | + | chr7.4:21499877-21499896 | MS.gene41753:intron | 25.0% |
| !! | TAGATTACCTTCTGTTTTAT+GGG | - | chr7.4:21499354-21499373 | None:intergenic | 25.0% |
| !! | TGATGACGAAATGAAATTTA+GGG | + | chr7.4:21500792-21500811 | MS.gene41753:intron | 25.0% |
| !! | TTAGATTACCTTCTGTTTTA+TGG | - | chr7.4:21499355-21499374 | None:intergenic | 25.0% |
| !! | TTCCATTTTCAATTTTGTGA+TGG | + | chr7.4:21499472-21499491 | MS.gene41753:intron | 25.0% |
| !!! | AGCTTTATTGTCTATATATC+AGG | + | chr7.4:21499876-21499895 | MS.gene41753:intron | 25.0% |
| !!! | ATCTTTTAAAACAAGAAACC+TGG | - | chr7.4:21500881-21500900 | None:intergenic | 25.0% |
| !!! | CTATTGTCAAGTTTGATTTT+TGG | + | chr7.4:21499123-21499142 | MS.gene41753:intron | 25.0% |
| !!! | TAAGGGTACAAATTTTCATT+TGG | + | chr7.4:21499412-21499431 | MS.gene41753:intron | 25.0% |
| !!! | TCAATTTTGTGATGGATAAT+TGG | + | chr7.4:21499480-21499499 | MS.gene41753:intron | 25.0% |
| !!! | TCTTTTCAAAAGTTTGTTTG+TGG | + | chr7.4:21499084-21499103 | MS.gene41753:intron | 25.0% |
| !!! | TGTTTTGAAATTTTTGTTGG+GGG | + | chr7.4:21498788-21498807 | MS.gene41753:intron | 25.0% |
| !!! | TTAAGGTTTTTTGTTCTTGA+AGG | + | chr7.4:21498631-21498650 | MS.gene41753:intron | 25.0% |
| AAGAACATAGAATCGTAGAT+AGG | - | chr7.4:21499808-21499827 | None:intergenic | 30.0% | |
| AATTTAGGGGTCTATTTAGT+TGG | + | chr7.4:21500806-21500825 | MS.gene41753:intron | 30.0% | |
| AGAACATAGAATCGTAGATA+GGG | - | chr7.4:21499807-21499826 | None:intergenic | 30.0% | |
| AGTAATTTATGTAGGAAGTG+GGG | + | chr7.4:21500040-21500059 | MS.gene41753:intron | 30.0% | |
| ATAAGCTGTAAAATGACATC+TGG | - | chr7.4:21499635-21499654 | None:intergenic | 30.0% | |
| CCTAATAAACTAAAACCCAA+AGG | - | chr7.4:21499687-21499706 | None:intergenic | 30.0% | |
| CGAGTACAAATAAATTCCTT+TGG | + | chr7.4:21499668-21499687 | MS.gene41753:intron | 30.0% | |
| CTCTAACAAACACGAAAAAA+GGG | - | chr7.4:21498929-21498948 | None:intergenic | 30.0% | |
| CTTTGATGTCAAGTTTGAAA+CGG | - | chr7.4:21501283-21501302 | None:intergenic | 30.0% | |
| GATGACGAAATGAAATTTAG+GGG | + | chr7.4:21500793-21500812 | MS.gene41753:intron | 30.0% | |
| GCTTTATGCTAATATTCATC+TGG | + | chr7.4:21499706-21499725 | MS.gene41753:intron | 30.0% | |
| TAAGCTGTAAAATGACATCT+GGG | - | chr7.4:21499634-21499653 | None:intergenic | 30.0% | |
| TAGAGAAGTTAAATCCATGA+TGG | + | chr7.4:21498944-21498963 | MS.gene41753:intron | 30.0% | |
| TCTCTAACAAACACGAAAAA+AGG | - | chr7.4:21498930-21498949 | None:intergenic | 30.0% | |
| TCTGGTGGTATTATTCAATT+GGG | + | chr7.4:21500760-21500779 | MS.gene41753:intron | 30.0% | |
| TGGTCATGTTTCAATATTTC+CGG | + | chr7.4:21501044-21501063 | MS.gene41753:intron | 30.0% | |
| TTAACTCAATGAAGTTGAAG+AGG | - | chr7.4:21498329-21498348 | None:intergenic | 30.0% | |
| TTGAATATTTCAGACAAGGA+CGG | + | chr7.4:21498437-21498456 | MS.gene41753:intron | 30.0% | |
| TTGACATGCAGAAAAACTAT+TGG | - | chr7.4:21499234-21499253 | None:intergenic | 30.0% | |
| ! | ATAGTTTTTCTGCATGTCAA+CGG | + | chr7.4:21499234-21499253 | MS.gene41753:intron | 30.0% |
| ! | CAATGCTCTCTTATAAGTTT+TGG | - | chr7.4:21499293-21499312 | None:intergenic | 30.0% |
| ! | CAGAAAGTAAGAACTTTTGA+AGG | + | chr7.4:21499577-21499596 | MS.gene41753:intron | 30.0% |
| ! | GAAAATGTCTACATTGACTA+AGG | + | chr7.4:21499394-21499413 | MS.gene41753:intron | 30.0% |
| ! | TCTACACACATTTTGTAAAC+AGG | + | chr7.4:21500942-21500961 | MS.gene41753:intron | 30.0% |
| ! | TCTACGATTCTATGTTCTTT+TGG | + | chr7.4:21499809-21499828 | MS.gene41753:intron | 30.0% |
| ! | TTTTCATAATGACCAAAACC+TGG | - | chr7.4:21499379-21499398 | None:intergenic | 30.0% |
| !!! | CCTTTGGGTTTTAGTTTATT+AGG | + | chr7.4:21499684-21499703 | MS.gene41753:intron | 30.0% |
| !!! | TCAAGTTTGATTTTTGGAGT+CGG | + | chr7.4:21499129-21499148 | MS.gene41753:intron | 30.0% |
| AACACCCCATGATTTATTTG+TGG | - | chr7.4:21498680-21498699 | None:intergenic | 35.0% | |
| AATGTCACAAATGCAGTCTT+TGG | - | chr7.4:21499011-21499030 | None:intergenic | 35.0% | |
| ACTAAGATATACTCTTCCAC+CGG | - | chr7.4:21500276-21500295 | None:intergenic | 35.0% | |
| AGTATCATTCAACTTCCTCT+CGG | - | chr7.4:21500552-21500571 | None:intergenic | 35.0% | |
| ATAAGCACAATCGCAAAAAC+AGG | - | chr7.4:21500217-21500236 | None:intergenic | 35.0% | |
| ATTGAACACATTCAGATCGT+TGG | + | chr7.4:21498531-21498550 | MS.gene41753:CDS | 35.0% | |
| CAAAATGTGTGTAGAATCAG+TGG | - | chr7.4:21500937-21500956 | None:intergenic | 35.0% | |
| CATGAATTCTTCTCATTCTC+TGG | + | chr7.4:21498504-21498523 | MS.gene41753:CDS | 35.0% | |
| CGTTTCAAACTTGACATCAA+AGG | + | chr7.4:21501281-21501300 | MS.gene41753:CDS | 35.0% | |
| GAACATAGAATCGTAGATAG+GGG | - | chr7.4:21499806-21499825 | None:intergenic | 35.0% | |
| GTAATTTATGTAGGAAGTGG+GGG | + | chr7.4:21500041-21500060 | MS.gene41753:intron | 35.0% | |
| GTCAAATTAATACAGCCACA+AGG | - | chr7.4:21501105-21501124 | None:intergenic | 35.0% | |
| GTCTGGTGGTATTATTCAAT+TGG | + | chr7.4:21500759-21500778 | MS.gene41753:intron | 35.0% | |
| GTTAAATTGTTACAGTCTGG+TGG | + | chr7.4:21500745-21500764 | MS.gene41753:intron | 35.0% | |
| GTTCTTGAAGGTAAATTTGG+AGG | + | chr7.4:21498643-21498662 | MS.gene41753:intron | 35.0% | |
| TACTGTACTACATCTCTTTC+AGG | + | chr7.4:21500241-21500260 | MS.gene41753:intron | 35.0% | |
| TCAAACTTGACATCAAAGGT+TGG | + | chr7.4:21501285-21501304 | MS.gene41753:CDS | 35.0% | |
| TCTTAGTAAAGCACAAGATG+TGG | + | chr7.4:21500289-21500308 | MS.gene41753:CDS | 35.0% | |
| TGTTGTAGAAATCATGATCG+TGG | - | chr7.4:21500180-21500199 | None:intergenic | 35.0% | |
| TGTTTCAATATTTCCGGAGT+AGG | + | chr7.4:21501050-21501069 | MS.gene41753:intron | 35.0% | |
| TTGAACACATTCAGATCGTT+GGG | + | chr7.4:21498532-21498551 | MS.gene41753:CDS | 35.0% | |
| TTGAAGGTAAATTTGGAGGA+GGG | + | chr7.4:21498647-21498666 | MS.gene41753:intron | 35.0% | |
| ! | AACATAATGGGACAGTTACT+AGG | + | chr7.4:21498761-21498780 | MS.gene41753:intron | 35.0% |
| ! | AGTTCTTTTGACAAGAGAGT+TGG | + | chr7.4:21500419-21500438 | MS.gene41753:CDS | 35.0% |
| ! | TTTGCTTGTTGCAGAGAATA+TGG | + | chr7.4:21498981-21499000 | MS.gene41753:intron | 35.0% |
| ! | TTTTACCTCAGTATTTGACG+CGG | - | chr7.4:21500103-21500122 | None:intergenic | 35.0% |
| !! | TGTTTTTGCGATTGTGCTTA+TGG | + | chr7.4:21500216-21500235 | MS.gene41753:intron | 35.0% |
| !!! | AGTTTTGGTTGTGAAGAAGT+CGG | - | chr7.4:21499278-21499297 | None:intergenic | 35.0% |
| !!! | TTGATTTTTGGAGTCGGTTT+GGG | + | chr7.4:21499135-21499154 | MS.gene41753:intron | 35.0% |
| !!! | TTTGATTTTTGGAGTCGGTT+TGG | + | chr7.4:21499134-21499153 | MS.gene41753:intron | 35.0% |
| AACAGAAGGTAATCTAAGCC+AGG | + | chr7.4:21499358-21499377 | MS.gene41753:intron | 40.0% | |
| AACTATGCTGGCAAAAGGAT+CGG | + | chr7.4:21500316-21500335 | MS.gene41753:CDS | 40.0% | |
| AGAAGCTCCCATAAAACAGA+AGG | + | chr7.4:21499344-21499363 | MS.gene41753:intron | 40.0% | |
| AGATGTGGTTACAACTATGC+TGG | + | chr7.4:21500304-21500323 | MS.gene41753:CDS | 40.0% | |
| CAGATGCTGCAATGAAGATA+AGG | - | chr7.4:21500627-21500646 | None:intergenic | 40.0% | |
| CTAAGATATACTCTTCCACC+GGG | - | chr7.4:21500275-21500294 | None:intergenic | 40.0% | |
| CTGACAGAGAAATTGACAGT+TGG | + | chr7.4:21500443-21500462 | MS.gene41753:CDS | 40.0% | |
| CTTCACTTTCTCATTCACCA+CGG | - | chr7.4:21500474-21500493 | None:intergenic | 40.0% | |
| CTTGAAGGTAAATTTGGAGG+AGG | + | chr7.4:21498646-21498665 | MS.gene41753:intron | 40.0% | |
| GAATGAGAAAGTGAAGTCTG+TGG | + | chr7.4:21500478-21500497 | MS.gene41753:CDS | 40.0% | |
| GAGAGGAAGTTGAATGATAC+TGG | + | chr7.4:21500551-21500570 | MS.gene41753:CDS | 40.0% | |
| GTATCATTTCTCACCTACTC+CGG | - | chr7.4:21501066-21501085 | None:intergenic | 40.0% | |
| GTTAACTGGTGCATTTAGCA+AGG | + | chr7.4:21501203-21501222 | MS.gene41753:CDS | 40.0% | |
| GTTACAACTATGCTGGCAAA+AGG | + | chr7.4:21500311-21500330 | MS.gene41753:CDS | 40.0% | |
| TCACATATACATGGACCTTG+TGG | + | chr7.4:21501087-21501106 | MS.gene41753:intron | 40.0% | |
| TGTACTACATCTCTTTCAGG+AGG | + | chr7.4:21500244-21500263 | MS.gene41753:intron | 40.0% | |
| TGTTGGGGGTTACATATGTA+GGG | + | chr7.4:21498802-21498821 | MS.gene41753:intron | 40.0% | |
| TTCAGATCTAGCTACTGAGA+GGG | + | chr7.4:21498476-21498495 | MS.gene41753:CDS | 40.0% | |
| TTGTTGGGGGTTACATATGT+AGG | + | chr7.4:21498801-21498820 | MS.gene41753:intron | 40.0% | |
| TTTCAGATCTAGCTACTGAG+AGG | + | chr7.4:21498475-21498494 | MS.gene41753:CDS | 40.0% | |
| TTTCGTACCAATTAGGCCAA+TGG | + | chr7.4:21501024-21501043 | MS.gene41753:intron | 40.0% | |
| ! | AAAGTTTGTTTGTGGAGCTG+TGG | + | chr7.4:21499092-21499111 | MS.gene41753:intron | 40.0% |
| ! | AACATGACCATTGGCCTAAT+TGG | - | chr7.4:21501034-21501053 | None:intergenic | 40.0% |
| ! | AGGTAATCTAAGCCAGGTTT+TGG | + | chr7.4:21499364-21499383 | MS.gene41753:intron | 40.0% |
| !! | TCAAAACAAGCAGGTTGGTT+TGG | + | chr7.4:21500582-21500601 | MS.gene41753:intron | 40.0% |
| !!! | AACCAACCTGCTTGTTTTGA+CGG | - | chr7.4:21500582-21500601 | None:intergenic | 40.0% |
| AACGCAATTTCAAGCGCTCT+GGG | - | chr7.4:21499041-21499060 | None:intergenic | 45.0% | |
| AACTGGTGCATTTAGCAAGG+TGG | + | chr7.4:21501206-21501225 | MS.gene41753:CDS | 45.0% | |
| AAGTCCAGTCGAGAACTATG+TGG | + | chr7.4:21499930-21499949 | MS.gene41753:CDS | 45.0% | |
| AAGTGAAGTCTGTGGATCAG+AGG | + | chr7.4:21500486-21500505 | MS.gene41753:CDS | 45.0% | |
| ACACATTCAGATCGTTGGGT+TGG | + | chr7.4:21498536-21498555 | MS.gene41753:intron | 45.0% | |
| ACTGACCTTTGCAGATGCAT+TGG | - | chr7.4:21500402-21500421 | None:intergenic | 45.0% | |
| ATCGTGGTTAACTGCTCATC+AGG | - | chr7.4:21500164-21500183 | None:intergenic | 45.0% | |
| ATGTGACTGCTGGAACAACA+TGG | + | chr7.4:21501181-21501200 | MS.gene41753:CDS | 45.0% | |
| CACAACATGAGCAACCATCA+TGG | - | chr7.4:21498961-21498980 | None:intergenic | 45.0% | |
| GCTGGAACAACATGGTTAAC+TGG | + | chr7.4:21501189-21501208 | MS.gene41753:CDS | 45.0% | |
| TAACGCAATTTCAAGCGCTC+TGG | - | chr7.4:21499042-21499061 | None:intergenic | 45.0% | |
| TGCATTTAGCAAGGTGGCAA+GGG | + | chr7.4:21501212-21501231 | MS.gene41753:CDS | 45.0% | |
| TTTGCCACATAGTTCTCGAC+TGG | - | chr7.4:21499937-21499956 | None:intergenic | 45.0% | |
| !! | AAGCAGGTTGGTTTGGACTT+GGG | + | chr7.4:21500589-21500608 | MS.gene41753:intron | 45.0% |
| !! | GCAAAACGCTTGTTTTCACC+AGG | + | chr7.4:21500860-21500879 | MS.gene41753:intron | 45.0% |
| AGATGCCGCGTCAAATACTG+AGG | + | chr7.4:21500095-21500114 | MS.gene41753:CDS | 50.0% | |
| AGCCGTCAAAACAAGCAGGT+TGG | + | chr7.4:21500577-21500596 | MS.gene41753:intron | 50.0% | |
| ATTGACAGTTGGACTCTCCG+TGG | + | chr7.4:21500454-21500473 | MS.gene41753:CDS | 50.0% | |
| CAGCAATATTTGCAGCCGAG+AGG | + | chr7.4:21500534-21500553 | MS.gene41753:CDS | 50.0% | |
| CTCTTTCAGGAGGAGAAACC+CGG | + | chr7.4:21500254-21500273 | MS.gene41753:intron | 50.0% | |
| GACTGCCAATGCATCTGCAA+AGG | + | chr7.4:21500394-21500413 | MS.gene41753:CDS | 50.0% | |
| GATCAGCCGTCAAAACAAGC+AGG | + | chr7.4:21500573-21500592 | MS.gene41753:CDS | 50.0% | |
| GCATGCAGATATGTGACTGC+TGG | + | chr7.4:21501171-21501190 | MS.gene41753:intron | 50.0% | |
| GTACAGCTACCTGCATCTCA+CGG | - | chr7.4:21499960-21499979 | None:intergenic | 50.0% | |
| GTATTTGACGCGGCATCTTC+AGG | - | chr7.4:21500093-21500112 | None:intergenic | 50.0% | |
| GTGCATTTAGCAAGGTGGCA+AGG | + | chr7.4:21501211-21501230 | MS.gene41753:CDS | 50.0% | |
| !! | CAAGCAGGTTGGTTTGGACT+TGG | + | chr7.4:21500588-21500607 | MS.gene41753:intron | 50.0% |
| TGTGGCAAACCGTGAGATGC+AGG | + | chr7.4:21499948-21499967 | MS.gene41753:CDS | 55.0% | |
| TTTAGCAAGGTGGCAAGGGC+TGG | + | chr7.4:21501216-21501235 | MS.gene41753:CDS | 55.0% | |
| TTTCAGGAGGAGAAACCCGG+TGG | + | chr7.4:21500257-21500276 | MS.gene41753:intron | 55.0% | |
| GCAAGGGCTGGAAACGTTGC+TGG | + | chr7.4:21501228-21501247 | MS.gene41753:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21498313 | 21501329 | 21498313 | ID=MS.gene41753 |
| chr7.4 | mRNA | 21498313 | 21501329 | 21498313 | ID=MS.gene41753.t1;Parent=MS.gene41753 |
| chr7.4 | exon | 21498313 | 21498318 | 21498313 | ID=MS.gene41753.t1.exon1;Parent=MS.gene41753.t1 |
| chr7.4 | CDS | 21498313 | 21498318 | 21498313 | ID=cds.MS.gene41753.t1;Parent=MS.gene41753.t1 |
| chr7.4 | exon | 21498450 | 21498553 | 21498450 | ID=MS.gene41753.t1.exon2;Parent=MS.gene41753.t1 |
| chr7.4 | CDS | 21498450 | 21498553 | 21498450 | ID=cds.MS.gene41753.t1;Parent=MS.gene41753.t1 |
| chr7.4 | exon | 21498995 | 21499070 | 21498995 | ID=MS.gene41753.t1.exon3;Parent=MS.gene41753.t1 |
| chr7.4 | CDS | 21498995 | 21499070 | 21498995 | ID=cds.MS.gene41753.t1;Parent=MS.gene41753.t1 |
| chr7.4 | exon | 21499898 | 21499969 | 21499898 | ID=MS.gene41753.t1.exon4;Parent=MS.gene41753.t1 |
| chr7.4 | CDS | 21499898 | 21499969 | 21499898 | ID=cds.MS.gene41753.t1;Parent=MS.gene41753.t1 |
| chr7.4 | exon | 21500054 | 21500116 | 21500054 | ID=MS.gene41753.t1.exon5;Parent=MS.gene41753.t1 |
| chr7.4 | CDS | 21500054 | 21500116 | 21500054 | ID=cds.MS.gene41753.t1;Parent=MS.gene41753.t1 |
| chr7.4 | exon | 21500263 | 21500594 | 21500263 | ID=MS.gene41753.t1.exon6;Parent=MS.gene41753.t1 |
| chr7.4 | CDS | 21500263 | 21500594 | 21500263 | ID=cds.MS.gene41753.t1;Parent=MS.gene41753.t1 |
| chr7.4 | exon | 21501179 | 21501329 | 21501179 | ID=MS.gene41753.t1.exon7;Parent=MS.gene41753.t1 |
| chr7.4 | CDS | 21501179 | 21501329 | 21501179 | ID=cds.MS.gene41753.t1;Parent=MS.gene41753.t1 |
| Gene Sequence |
| Protein sequence |
