Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067833.t1 | XP_003624658.1 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 5.30E-130 | 473.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067833.t1 | Q9LFD5 | 40.9 | 247 | 124 | 3 | 2 | 248 | 4 | 228 | 8.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067833.t1 | Q2HVL4 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 3.8e-130 | 473.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene067833 | 0.817794 | 2.74E-52 | -1.69E-46 |
| MS.gene04917 | MS.gene067833 | 0.816459 | 5.47E-52 | -1.69E-46 |
| MS.gene056285 | MS.gene067833 | 0.812861 | 3.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067833 | MS.gene97723 | PPI |
| MS.gene61014 | MS.gene067833 | PPI |
| MS.gene067833 | MS.gene71213 | PPI |
| MS.gene027939 | MS.gene067833 | PPI |
| MS.gene009024 | MS.gene067833 | PPI |
| MS.gene78939 | MS.gene067833 | PPI |
| MS.gene067833 | MS.gene051314 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067833.t1 | MTR_7g086080 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 520 |
| MS.gene067833.t1 | MTR_8g066460 | 49.606 | 254 | 110 | 3 | 1 | 252 | 17 | 254 | 8.21e-75 | 230 |
| MS.gene067833.t1 | MTR_8g066460 | 49.606 | 254 | 110 | 3 | 1 | 252 | 1 | 238 | 1.14e-74 | 229 |
| MS.gene067833.t1 | MTR_5g029640 | 46.063 | 254 | 119 | 3 | 1 | 252 | 1 | 238 | 9.41e-63 | 204 |
| MS.gene067833.t1 | MTR_5g029640 | 49.242 | 132 | 67 | 0 | 121 | 252 | 279 | 410 | 4.45e-34 | 128 |
| MS.gene067833.t1 | MTR_8g105910 | 40.964 | 249 | 129 | 2 | 4 | 252 | 32 | 262 | 1.22e-61 | 197 |
| MS.gene067833.t1 | MTR_1g032860 | 41.365 | 249 | 127 | 2 | 4 | 252 | 32 | 261 | 2.06e-60 | 194 |
| MS.gene067833.t1 | MTR_5g039130 | 38.710 | 248 | 131 | 5 | 6 | 244 | 10 | 245 | 1.67e-47 | 158 |
| MS.gene067833.t1 | MTR_7g010100 | 33.597 | 253 | 134 | 7 | 5 | 237 | 7 | 245 | 1.42e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067833.t1 | AT5G32450 | 73.180 | 261 | 68 | 2 | 1 | 259 | 1 | 261 | 8.00e-136 | 384 |
| MS.gene067833.t1 | AT4G17720 | 46.484 | 256 | 117 | 2 | 1 | 252 | 1 | 240 | 2.38e-68 | 214 |
| MS.gene067833.t1 | AT5G16840 | 45.749 | 247 | 113 | 3 | 2 | 248 | 4 | 229 | 3.50e-66 | 207 |
| MS.gene067833.t1 | AT5G16840 | 45.749 | 247 | 112 | 3 | 2 | 248 | 4 | 228 | 7.17e-66 | 206 |
| MS.gene067833.t1 | AT5G16840 | 45.565 | 248 | 113 | 3 | 1 | 248 | 1 | 226 | 9.75e-66 | 206 |
| MS.gene067833.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 9.85e-65 | 204 |
| MS.gene067833.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 9.85e-65 | 204 |
| MS.gene067833.t1 | AT1G67950 | 38.034 | 234 | 128 | 2 | 4 | 237 | 29 | 245 | 2.59e-53 | 174 |
| MS.gene067833.t1 | AT1G67950 | 38.462 | 234 | 126 | 2 | 4 | 237 | 29 | 244 | 5.84e-53 | 173 |
| MS.gene067833.t1 | AT1G67950 | 38.462 | 234 | 126 | 2 | 4 | 237 | 30 | 245 | 7.06e-53 | 173 |
| MS.gene067833.t1 | AT1G14340 | 38.494 | 239 | 140 | 3 | 6 | 244 | 9 | 240 | 3.26e-42 | 145 |
| MS.gene067833.t1 | AT1G67950 | 40.000 | 195 | 99 | 2 | 43 | 237 | 9 | 185 | 7.46e-42 | 143 |
| MS.gene067833.t1 | AT3G01210 | 35.000 | 240 | 130 | 5 | 7 | 233 | 9 | 235 | 1.28e-37 | 133 |
| MS.gene067833.t1 | AT3G01210 | 35.000 | 240 | 130 | 5 | 7 | 233 | 9 | 235 | 1.28e-37 | 133 |
Find 52 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATTCTTCTCATTCTC+TGG | 0.285143 | 7.1:+19224352 | MS.gene067833:CDS |
| AATGTCACAAATGCAGTCTT+TGG | 0.286462 | 7.1:-19224856 | None:intergenic |
| TTTGCTTGTTGCAGAGAATA+TGG | 0.318014 | 7.1:+19224829 | MS.gene067833:intron |
| GTATTTGACGCGGCATCTTC+AGG | 0.323691 | 7.1:-19225938 | None:intergenic |
| TGAAATTGCGTTATTGTTAT+CGG | 0.324746 | 7.1:+19224897 | MS.gene067833:CDS |
| AACTAGAGAGAAGTTTAATA+TGG | 0.366039 | 7.1:+19227099 | MS.gene067833:CDS |
| GCAAGGGCTGGAAACGTTGC+TGG | 0.377253 | 7.1:+19227070 | MS.gene067833:CDS |
| GCTGGAACAACATGGTTAAC+TGG | 0.389119 | 7.1:+19227031 | MS.gene067833:CDS |
| GAGAGGAAGTTGAATGATAC+TGG | 0.403876 | 7.1:+19226399 | MS.gene067833:CDS |
| TTTAGCAAGGTGGCAAGGGC+TGG | 0.431556 | 7.1:+19227058 | MS.gene067833:CDS |
| TAACGCAATTTCAAGCGCTC+TGG | 0.432460 | 7.1:-19224887 | None:intergenic |
| TTGAACACATTCAGATCGTT+GGG | 0.448882 | 7.1:+19224380 | MS.gene067833:CDS |
| ATTGAACACATTCAGATCGT+TGG | 0.456764 | 7.1:+19224379 | MS.gene067833:CDS |
| CTTTGATGTCAAGTTTGAAA+CGG | 0.482047 | 7.1:-19227122 | None:intergenic |
| AAGTAATTTATGTAGGAAGT+GGG | 0.492069 | 7.1:+19225887 | MS.gene067833:intron |
| CGTTTCAAACTTGACATCAA+AGG | 0.502962 | 7.1:+19227123 | MS.gene067833:CDS |
| CTCTTTCAGGAGGAGAAACC+CGG | 0.504189 | 7.1:+19226102 | MS.gene067833:intron |
| ACTAAGATATACTCTTCCAC+CGG | 0.504930 | 7.1:-19226121 | None:intergenic |
| AACGCAATTTCAAGCGCTCT+GGG | 0.507323 | 7.1:-19224886 | None:intergenic |
| GTTACAACTATGCTGGCAAA+AGG | 0.514375 | 7.1:+19226159 | MS.gene067833:CDS |
| ACTGACCTTTGCAGATGCAT+TGG | 0.525594 | 7.1:-19226247 | None:intergenic |
| TGTGGCAAACCGTGAGATGC+AGG | 0.527957 | 7.1:+19225796 | MS.gene067833:CDS |
| AACTATGCTGGCAAAAGGAT+CGG | 0.528169 | 7.1:+19226164 | MS.gene067833:CDS |
| TGCATTTAGCAAGGTGGCAA+GGG | 0.529790 | 7.1:+19227054 | MS.gene067833:CDS |
| GTGCATTTAGCAAGGTGGCA+AGG | 0.536580 | 7.1:+19227053 | MS.gene067833:CDS |
| TTTGCCACATAGTTCTCGAC+TGG | 0.548888 | 7.1:-19225782 | None:intergenic |
| AGTAATTTATGTAGGAAGTG+GGG | 0.552167 | 7.1:+19225888 | MS.gene067833:intron |
| GCATGCAGATATGTGACTGC+TGG | 0.562534 | 7.1:+19227013 | MS.gene067833:intron |
| AGATGTGGTTACAACTATGC+TGG | 0.563766 | 7.1:+19226152 | MS.gene067833:CDS |
| AGTATCATTCAACTTCCTCT+CGG | 0.584802 | 7.1:-19226397 | None:intergenic |
| TTGAATATTTCAGACAAGGA+CGG | 0.584833 | 7.1:+19224285 | MS.gene067833:intron |
| GACTGCCAATGCATCTGCAA+AGG | 0.597300 | 7.1:+19226242 | MS.gene067833:CDS |
| AAGTGAAGTCTGTGGATCAG+AGG | 0.597757 | 7.1:+19226334 | MS.gene067833:CDS |
| GTACAGCTACCTGCATCTCA+CGG | 0.600081 | 7.1:-19225805 | None:intergenic |
| GTTAACTGGTGCATTTAGCA+AGG | 0.607564 | 7.1:+19227045 | MS.gene067833:CDS |
| GTAATTTATGTAGGAAGTGG+GGG | 0.607927 | 7.1:+19225889 | MS.gene067833:intron |
| TTCAGATCTAGCTACTGAGA+GGG | 0.608323 | 7.1:+19224324 | MS.gene067833:CDS |
| GATCAGCCGTCAAAACAAGC+AGG | 0.610495 | 7.1:+19226421 | MS.gene067833:CDS |
| CTGACAGAGAAATTGACAGT+TGG | 0.610991 | 7.1:+19226291 | MS.gene067833:CDS |
| CTAAGATATACTCTTCCACC+GGG | 0.618426 | 7.1:-19226120 | None:intergenic |
| TCTTAGTAAAGCACAAGATG+TGG | 0.626024 | 7.1:+19226137 | MS.gene067833:CDS |
| CTTCACTTTCTCATTCACCA+CGG | 0.639756 | 7.1:-19226319 | None:intergenic |
| AACTGGTGCATTTAGCAAGG+TGG | 0.655445 | 7.1:+19227048 | MS.gene067833:CDS |
| TTTCAGATCTAGCTACTGAG+AGG | 0.669065 | 7.1:+19224323 | MS.gene067833:CDS |
| CAGCAATATTTGCAGCCGAG+AGG | 0.674375 | 7.1:+19226382 | MS.gene067833:CDS |
| AAGTCCAGTCGAGAACTATG+TGG | 0.688839 | 7.1:+19225778 | MS.gene067833:CDS |
| ACATGTTTCAGATAAAACAA+TGG | 0.699760 | 7.1:+19226359 | MS.gene067833:CDS |
| GAATGAGAAAGTGAAGTCTG+TGG | 0.702365 | 7.1:+19226326 | MS.gene067833:CDS |
| ATTGACAGTTGGACTCTCCG+TGG | 0.704504 | 7.1:+19226302 | MS.gene067833:CDS |
| TTTCAGGAGGAGAAACCCGG+TGG | 0.713949 | 7.1:+19226105 | MS.gene067833:intron |
| AGATGCCGCGTCAAATACTG+AGG | 0.716016 | 7.1:+19225943 | MS.gene067833:CDS |
| ATGTGACTGCTGGAACAACA+TGG | 0.736483 | 7.1:+19227023 | MS.gene067833:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAACAAAAACATAAT+GGG | + | chr7.1:19224597-19224616 | MS.gene067833:intron | 10.0% |
| !! | ACTAAAATTAAAAAACAAAA+GGG | - | chr7.1:19224454-19224473 | None:intergenic | 10.0% |
| !! | TAAAATAAACAAAAACATAA+TGG | + | chr7.1:19224596-19224615 | MS.gene067833:intron | 10.0% |
| !!! | GATTTTATATTAAATTGTTA+TGG | + | chr7.1:19226500-19226519 | MS.gene067833:intron | 10.0% |
| !!! | TGTTTTTGTTTATTTTATTT+TGG | - | chr7.1:19224593-19224612 | None:intergenic | 10.0% |
| !! | ATTAAAATGAAAACTACAAA+TGG | + | chr7.1:19226827-19226846 | MS.gene067833:intron | 15.0% |
| !! | CAAAAATAATATACAACATA+GGG | - | chr7.1:19226969-19226988 | None:intergenic | 15.0% |
| !! | CACTAAAATTAAAAAACAAA+AGG | - | chr7.1:19224455-19224474 | None:intergenic | 15.0% |
| !! | CTAAAATTAAAAAACAAAAG+GGG | - | chr7.1:19224453-19224472 | None:intergenic | 15.0% |
| !! | GAAAAAAGAATACAAAAAAT+TGG | - | chr7.1:19227478-19227497 | None:intergenic | 15.0% |
| !! | TCAAAAATAATATACAACAT+AGG | - | chr7.1:19226970-19226989 | None:intergenic | 15.0% |
| !! | TTATCAAAAGTAATTTATGT+AGG | + | chr7.1:19225880-19225899 | MS.gene067833:intron | 15.0% |
| !!! | AATTTTGAATAAAAACTTGT+AGG | + | chr7.1:19225009-19225028 | MS.gene067833:intron | 15.0% |
| !!! | ATTTTGAATAAAAACTTGTA+GGG | + | chr7.1:19225010-19225029 | MS.gene067833:intron | 15.0% |
| !!! | TGAAATTTAAAACAATATGT+GGG | + | chr7.1:19224719-19224738 | MS.gene067833:intron | 15.0% |
| !!! | TTGAAATTTAAAACAATATG+TGG | + | chr7.1:19224718-19224737 | MS.gene067833:intron | 15.0% |
| !!! | TTTAATTTTAGTGTCAATTA+AGG | + | chr7.1:19224462-19224481 | MS.gene067833:intron | 15.0% |
| !!! | TTTGTTTTGAAATTTTTGTT+GGG | + | chr7.1:19224634-19224653 | MS.gene067833:intron | 15.0% |
| !!! | TTTTGTTTTGAAATTTTTGT+TGG | + | chr7.1:19224633-19224652 | MS.gene067833:intron | 15.0% |
| !! | AATTAAGAGCAATTGATATT+TGG | - | chr7.1:19225830-19225849 | None:intergenic | 20.0% |
| !! | TATGAACATTTAGTTAAGAT+TGG | + | chr7.1:19225378-19225397 | MS.gene067833:intron | 20.0% |
| !! | TTGCAATTAAAAATGAAAAC+AGG | - | chr7.1:19226687-19226706 | None:intergenic | 20.0% |
| !!! | ATATTTTTTTCGTACCAATT+AGG | + | chr7.1:19226859-19226878 | MS.gene067833:intron | 20.0% |
| !!! | CTATTATCTTTAGTTTAACA+CGG | - | chr7.1:19227166-19227185 | None:intergenic | 20.0% |
| !!! | CTATTGTCAAGTTTAATTTT+TGG | + | chr7.1:19224971-19224990 | MS.gene067833:intron | 20.0% |
| !!! | TAATTTGGTTTTTTCTTTCT+GGG | + | chr7.1:19224247-19224266 | MS.gene067833:intron | 20.0% |
| !!! | TCTTTTCAAAAATTTGTTTG+TGG | + | chr7.1:19224932-19224951 | MS.gene067833:intron | 20.0% |
| !!! | TTGTTTTGAAATTTTTGTTG+GGG | + | chr7.1:19224635-19224654 | MS.gene067833:intron | 20.0% |
| ! | AAAGTAATTTATGTAGGAAG+TGG | + | chr7.1:19225886-19225905 | MS.gene067833:intron | 25.0% |
| ! | AAATATTGAAACATGACCAT+TGG | - | chr7.1:19226885-19226904 | None:intergenic | 25.0% |
| ! | AACTAGAGAGAAGTTTAATA+TGG | + | chr7.1:19227099-19227118 | MS.gene067833:CDS | 25.0% |
| ! | AAGAACATAGAATCATAGAT+AGG | - | chr7.1:19225656-19225675 | None:intergenic | 25.0% |
| ! | AAGATTTGTAAATGAAATCG+TGG | + | chr7.1:19226739-19226758 | MS.gene067833:intron | 25.0% |
| ! | AAGTAATTTATGTAGGAAGT+GGG | + | chr7.1:19225887-19225906 | MS.gene067833:intron | 25.0% |
| ! | AATGATACATCACATATACA+TGG | + | chr7.1:19226920-19226939 | MS.gene067833:intron | 25.0% |
| ! | AATGTTCATAACAAGTCAAA+AGG | - | chr7.1:19225368-19225387 | None:intergenic | 25.0% |
| ! | ACATGTTTCAGATAAAACAA+TGG | + | chr7.1:19226359-19226378 | MS.gene067833:CDS | 25.0% |
| ! | AGAACATAGAATCATAGATA+GGG | - | chr7.1:19225655-19225674 | None:intergenic | 25.0% |
| ! | ATCCATCACAAAATTGAAAA+TGG | - | chr7.1:19225325-19225344 | None:intergenic | 25.0% |
| ! | GAGTACAAATAAATTCCTTT+GGG | + | chr7.1:19225517-19225536 | MS.gene067833:intron | 25.0% |
| ! | GTAAACCACAAATAAATCAT+GGG | + | chr7.1:19224520-19224539 | MS.gene067833:intron | 25.0% |
| ! | TAAACCACAAATAAATCATG+GGG | + | chr7.1:19224521-19224540 | MS.gene067833:intron | 25.0% |
| ! | TATGTTAAATTGTTACAGTC+TGG | + | chr7.1:19226586-19226605 | MS.gene067833:intron | 25.0% |
| ! | TGAAATTGCGTTATTGTTAT+CGG | + | chr7.1:19224897-19224916 | MS.gene067833:CDS | 25.0% |
| ! | TGTAAACCACAAATAAATCA+TGG | + | chr7.1:19224519-19224538 | MS.gene067833:intron | 25.0% |
| ! | TTTCTTGAATATTTCAGACA+AGG | + | chr7.1:19224281-19224300 | MS.gene067833:intron | 25.0% |
| ! | TTTGTTCTTGAAGGTAAATT+TGG | + | chr7.1:19224488-19224507 | MS.gene067833:intron | 25.0% |
| !! | AAAATGTCTACATTGACTAA+GGG | + | chr7.1:19225243-19225262 | MS.gene067833:intron | 25.0% |
| !! | ATGATGACGAAATGAAATTT+AGG | + | chr7.1:19226635-19226654 | MS.gene067833:intron | 25.0% |
| !! | GAAATTCTTGCATATTGTTT+TGG | + | chr7.1:19224694-19224713 | MS.gene067833:intron | 25.0% |
| !! | GCTTTATTGTCTATATATCA+GGG | + | chr7.1:19225725-19225744 | MS.gene067833:intron | 25.0% |
| !! | TCTATGATTCTATGTTCTTT+TGG | + | chr7.1:19225657-19225676 | MS.gene067833:intron | 25.0% |
| !! | TGATGACGAAATGAAATTTA+GGG | + | chr7.1:19226636-19226655 | MS.gene067833:intron | 25.0% |
| !! | TTCCATTTTCAATTTTGTGA+TGG | + | chr7.1:19225320-19225339 | MS.gene067833:intron | 25.0% |
| !!! | AGCTTTATTGTCTATATATC+AGG | + | chr7.1:19225724-19225743 | MS.gene067833:intron | 25.0% |
| !!! | ATCTTTTAAAACAAGAAACC+TGG | - | chr7.1:19226724-19226743 | None:intergenic | 25.0% |
| !!! | CTAATTTGGTTTTTTCTTTC+TGG | + | chr7.1:19224246-19224265 | MS.gene067833:intron | 25.0% |
| !!! | TAAGGGTACAAATTTTCATT+TGG | + | chr7.1:19225260-19225279 | MS.gene067833:intron | 25.0% |
| !!! | TCAAGTTTAATTTTTGGAGT+CGG | + | chr7.1:19224977-19224996 | MS.gene067833:intron | 25.0% |
| !!! | TCAATTTTGTGATGGATAAT+TGG | + | chr7.1:19225328-19225347 | MS.gene067833:intron | 25.0% |
| !!! | TGTTTTGAAATTTTTGTTGG+GGG | + | chr7.1:19224636-19224655 | MS.gene067833:intron | 25.0% |
| !!! | TTAAGGTTTTTTGTTCTTGA+AGG | + | chr7.1:19224479-19224498 | MS.gene067833:intron | 25.0% |
| AATTTAGGGGTCTATTTAGT+TGG | + | chr7.1:19226650-19226669 | MS.gene067833:intron | 30.0% | |
| AGTAATTTATGTAGGAAGTG+GGG | + | chr7.1:19225888-19225907 | MS.gene067833:intron | 30.0% | |
| ATAAGCTGTAAAATGACATC+TGG | - | chr7.1:19225483-19225502 | None:intergenic | 30.0% | |
| CCTAATAAACTAAAACCCAA+AGG | - | chr7.1:19225535-19225554 | None:intergenic | 30.0% | |
| CGAGTACAAATAAATTCCTT+TGG | + | chr7.1:19225516-19225535 | MS.gene067833:intron | 30.0% | |
| CTTTGATGTCAAGTTTGAAA+CGG | - | chr7.1:19227125-19227144 | None:intergenic | 30.0% | |
| GAACATAGAATCATAGATAG+GGG | - | chr7.1:19225654-19225673 | None:intergenic | 30.0% | |
| GATGACGAAATGAAATTTAG+GGG | + | chr7.1:19226637-19226656 | MS.gene067833:intron | 30.0% | |
| GCTTTATGCTAATATTCATC+TGG | + | chr7.1:19225554-19225573 | MS.gene067833:intron | 30.0% | |
| GGAAACTTCATTAGTTGTAT+AGG | + | chr7.1:19227316-19227335 | MS.gene067833:intron | 30.0% | |
| GTTCTAACTTGACTCTAATT+TGG | + | chr7.1:19224232-19224251 | MS.gene067833:intron | 30.0% | |
| TAAGCTGTAAAATGACATCT+GGG | - | chr7.1:19225482-19225501 | None:intergenic | 30.0% | |
| TAGAGAAGTTAAATCCATGA+TGG | + | chr7.1:19224792-19224811 | MS.gene067833:intron | 30.0% | |
| TCTGGTGGTATTATTCAATT+GGG | + | chr7.1:19226604-19226623 | MS.gene067833:intron | 30.0% | |
| TCTTTCAGAACTGTTATGTA+AGG | + | chr7.1:19227370-19227389 | MS.gene067833:intron | 30.0% | |
| TGGTCATGTTTCAATATTTC+CGG | + | chr7.1:19226886-19226905 | MS.gene067833:intron | 30.0% | |
| TTAACTCAATGAAGTTGAAG+AGG | - | chr7.1:19224177-19224196 | None:intergenic | 30.0% | |
| TTGAATATTTCAGACAAGGA+CGG | + | chr7.1:19224285-19224304 | MS.gene067833:intron | 30.0% | |
| TTGACATGCAGAAAAACTAT+TGG | - | chr7.1:19225082-19225101 | None:intergenic | 30.0% | |
| ! | ATAGTTTTTCTGCATGTCAA+CGG | + | chr7.1:19225082-19225101 | MS.gene067833:intron | 30.0% |
| ! | CAATGCTCTCTTATAAGTTT+TGG | - | chr7.1:19225141-19225160 | None:intergenic | 30.0% |
| ! | CAGAAAGTAAGAACTTTTGA+AGG | + | chr7.1:19225425-19225444 | MS.gene067833:intron | 30.0% |
| ! | GAAAATGTCTACATTGACTA+AGG | + | chr7.1:19225242-19225261 | MS.gene067833:intron | 30.0% |
| ! | TCTACACACATTTTGTAAAC+AGG | + | chr7.1:19226785-19226804 | MS.gene067833:intron | 30.0% |
| ! | TTTTCATAATGACCAAAACC+TGG | - | chr7.1:19225227-19225246 | None:intergenic | 30.0% |
| !! | AATTTTTCATGCATTGATGC+AGG | + | chr7.1:19227295-19227314 | MS.gene067833:intron | 30.0% |
| !!! | CCTTTGGGTTTTAGTTTATT+AGG | + | chr7.1:19225532-19225551 | MS.gene067833:intron | 30.0% |
| !!! | TTAATTTTTGGAGTCGGTTT+GGG | + | chr7.1:19224983-19225002 | MS.gene067833:intron | 30.0% |
| !!! | TTTAATTTTTGGAGTCGGTT+TGG | + | chr7.1:19224982-19225001 | MS.gene067833:intron | 30.0% |
| AACACCCCATGATTTATTTG+TGG | - | chr7.1:19224528-19224547 | None:intergenic | 35.0% | |
| AATGTCACAAATGCAGTCTT+TGG | - | chr7.1:19224859-19224878 | None:intergenic | 35.0% | |
| ACTAAGATATACTCTTCCAC+CGG | - | chr7.1:19226124-19226143 | None:intergenic | 35.0% | |
| AGAAGCTCTCATAAAACAGA+AGG | + | chr7.1:19225192-19225211 | MS.gene067833:intron | 35.0% | |
| AGTATCATTCAACTTCCTCT+CGG | - | chr7.1:19226400-19226419 | None:intergenic | 35.0% | |
| ATAAGCTCAATCGCAAAAAC+AGG | - | chr7.1:19226065-19226084 | None:intergenic | 35.0% | |
| ATTGAACACATTCAGATCGT+TGG | + | chr7.1:19224379-19224398 | MS.gene067833:CDS | 35.0% | |
| CAAAATGTGTGTAGAATCAG+TGG | - | chr7.1:19226780-19226799 | None:intergenic | 35.0% | |
| CATGAATTCTTCTCATTCTC+TGG | + | chr7.1:19224352-19224371 | MS.gene067833:CDS | 35.0% | |
| CGTTTCAAACTTGACATCAA+AGG | + | chr7.1:19227123-19227142 | MS.gene067833:CDS | 35.0% | |
| GTAATTTATGTAGGAAGTGG+GGG | + | chr7.1:19225889-19225908 | MS.gene067833:intron | 35.0% | |
| GTCAAATTAATACAGCCACA+AGG | - | chr7.1:19226947-19226966 | None:intergenic | 35.0% | |
| GTCTGGTGGTATTATTCAAT+TGG | + | chr7.1:19226603-19226622 | MS.gene067833:intron | 35.0% | |
| GTTAAATTGTTACAGTCTGG+TGG | + | chr7.1:19226589-19226608 | MS.gene067833:intron | 35.0% | |
| GTTCTTGAAGGTAAATTTGG+AGG | + | chr7.1:19224491-19224510 | MS.gene067833:intron | 35.0% | |
| TACTGTACTACATCTCTTTC+AGG | + | chr7.1:19226089-19226108 | MS.gene067833:intron | 35.0% | |
| TCAAACTTGACATCAAAGGT+TGG | + | chr7.1:19227127-19227146 | MS.gene067833:intron | 35.0% | |
| TCTTAGTAAAGCACAAGATG+TGG | + | chr7.1:19226137-19226156 | MS.gene067833:CDS | 35.0% | |
| TGTTGTAGAAATCATGATCG+TGG | - | chr7.1:19226028-19226047 | None:intergenic | 35.0% | |
| TGTTTCAATATTTCCGGAGT+AGG | + | chr7.1:19226892-19226911 | MS.gene067833:intron | 35.0% | |
| TTGAACACATTCAGATCGTT+GGG | + | chr7.1:19224380-19224399 | MS.gene067833:CDS | 35.0% | |
| TTGAAGGTAAATTTGGAGGA+GGG | + | chr7.1:19224495-19224514 | MS.gene067833:intron | 35.0% | |
| ! | AAAATTTGTTTGTGGAGCTG+TGG | + | chr7.1:19224940-19224959 | MS.gene067833:intron | 35.0% |
| ! | AACATAATGGGACAGTTACT+AGG | + | chr7.1:19224609-19224628 | MS.gene067833:intron | 35.0% |
| ! | AGTTCTTTTGACAAGAGAGT+TGG | + | chr7.1:19226267-19226286 | MS.gene067833:CDS | 35.0% |
| ! | TTTGCTTGTTGCAGAGAATA+TGG | + | chr7.1:19224829-19224848 | MS.gene067833:intron | 35.0% |
| ! | TTTTACCTCAGTATTTGACG+CGG | - | chr7.1:19225951-19225970 | None:intergenic | 35.0% |
| !! | TGTTTTTGCGATTGAGCTTA+TGG | + | chr7.1:19226064-19226083 | MS.gene067833:intron | 35.0% |
| !! | TTGATCTTTGAGATCACGAA+CGG | + | chr7.1:19227394-19227413 | MS.gene067833:intron | 35.0% |
| !!! | AGTTTTGGTTGTGAAGAAGT+CGG | - | chr7.1:19225126-19225145 | None:intergenic | 35.0% |
| AAAACAAGCAGGTTTGGACT+TGG | + | chr7.1:19226432-19226451 | MS.gene067833:intron | 40.0% | |
| AAACAAGCAGGTTTGGACTT+GGG | + | chr7.1:19226433-19226452 | MS.gene067833:intron | 40.0% | |
| AACAGAAGGTAATCTAAGCC+AGG | + | chr7.1:19225206-19225225 | MS.gene067833:intron | 40.0% | |
| AACTATGCTGGCAAAAGGAT+CGG | + | chr7.1:19226164-19226183 | MS.gene067833:CDS | 40.0% | |
| AGATGTGGTTACAACTATGC+TGG | + | chr7.1:19226152-19226171 | MS.gene067833:CDS | 40.0% | |
| CAGATGCTGCAATGAAGATA+AGG | - | chr7.1:19226471-19226490 | None:intergenic | 40.0% | |
| CTAAGATATACTCTTCCACC+GGG | - | chr7.1:19226123-19226142 | None:intergenic | 40.0% | |
| CTGACAGAGAAATTGACAGT+TGG | + | chr7.1:19226291-19226310 | MS.gene067833:CDS | 40.0% | |
| CTTCACTTTCTCATTCACCA+CGG | - | chr7.1:19226322-19226341 | None:intergenic | 40.0% | |
| CTTGAAGGTAAATTTGGAGG+AGG | + | chr7.1:19224494-19224513 | MS.gene067833:intron | 40.0% | |
| GAATGAGAAAGTGAAGTCTG+TGG | + | chr7.1:19226326-19226345 | MS.gene067833:CDS | 40.0% | |
| GAGAGGAAGTTGAATGATAC+TGG | + | chr7.1:19226399-19226418 | MS.gene067833:CDS | 40.0% | |
| GTATAGGCCAGAATTTCAGA+AGG | + | chr7.1:19227332-19227351 | MS.gene067833:intron | 40.0% | |
| GTATCATTTCTCACCTACTC+CGG | - | chr7.1:19226908-19226927 | None:intergenic | 40.0% | |
| GTTAACTGGTGCATTTAGCA+AGG | + | chr7.1:19227045-19227064 | MS.gene067833:CDS | 40.0% | |
| GTTACAACTATGCTGGCAAA+AGG | + | chr7.1:19226159-19226178 | MS.gene067833:CDS | 40.0% | |
| TCACATATACATGGACCTTG+TGG | + | chr7.1:19226929-19226948 | MS.gene067833:intron | 40.0% | |
| TCGAGAGAACTTATATCGAG+TGG | + | chr7.1:19227212-19227231 | MS.gene067833:intron | 40.0% | |
| TGTACTACATCTCTTTCAGG+AGG | + | chr7.1:19226092-19226111 | MS.gene067833:intron | 40.0% | |
| TGTTGGGGGTTACATATGTA+GGG | + | chr7.1:19224650-19224669 | MS.gene067833:intron | 40.0% | |
| TTCAGATCTAGCTACTGAGA+GGG | + | chr7.1:19224324-19224343 | MS.gene067833:CDS | 40.0% | |
| TTGTTGGGGGTTACATATGT+AGG | + | chr7.1:19224649-19224668 | MS.gene067833:intron | 40.0% | |
| TTTCAGAAGGTCTCAAGTGA+AGG | + | chr7.1:19227345-19227364 | MS.gene067833:intron | 40.0% | |
| TTTCAGATCTAGCTACTGAG+AGG | + | chr7.1:19224323-19224342 | MS.gene067833:CDS | 40.0% | |
| TTTCGTACCAATTAGGCCAA+TGG | + | chr7.1:19226866-19226885 | MS.gene067833:intron | 40.0% | |
| ! | AACATGACCATTGGCCTAAT+TGG | - | chr7.1:19226876-19226895 | None:intergenic | 40.0% |
| ! | AGGTAATCTAAGCCAGGTTT+TGG | + | chr7.1:19225212-19225231 | MS.gene067833:intron | 40.0% |
| !! | CTTGAGACCTTCTGAAATTC+TGG | - | chr7.1:19227342-19227361 | None:intergenic | 40.0% |
| !!! | TCCAAACCTGCTTGTTTTGA+CGG | - | chr7.1:19226430-19226449 | None:intergenic | 40.0% |
| AACGCAATTTCAAGCGCTCT+GGG | - | chr7.1:19224889-19224908 | None:intergenic | 45.0% | |
| AACTGGTGCATTTAGCAAGG+TGG | + | chr7.1:19227048-19227067 | MS.gene067833:CDS | 45.0% | |
| AAGTCCAGTCGAGAACTATG+TGG | + | chr7.1:19225778-19225797 | MS.gene067833:CDS | 45.0% | |
| AAGTGAAGTCTGTGGATCAG+AGG | + | chr7.1:19226334-19226353 | MS.gene067833:CDS | 45.0% | |
| ACACATTCAGATCGTTGGGT+TGG | + | chr7.1:19224384-19224403 | MS.gene067833:intron | 45.0% | |
| ACTGACCTTTGCAGATGCAT+TGG | - | chr7.1:19226250-19226269 | None:intergenic | 45.0% | |
| ATCGTGGTTAACTGCTCATC+AGG | - | chr7.1:19226012-19226031 | None:intergenic | 45.0% | |
| ATGTGACTGCTGGAACAACA+TGG | + | chr7.1:19227023-19227042 | MS.gene067833:CDS | 45.0% | |
| CACAACATGAGCAACCATCA+TGG | - | chr7.1:19224809-19224828 | None:intergenic | 45.0% | |
| GCTGGAACAACATGGTTAAC+TGG | + | chr7.1:19227031-19227050 | MS.gene067833:CDS | 45.0% | |
| TAACGCAATTTCAAGCGCTC+TGG | - | chr7.1:19224890-19224909 | None:intergenic | 45.0% | |
| TGCATTTAGCAAGGTGGCAA+GGG | + | chr7.1:19227054-19227073 | MS.gene067833:CDS | 45.0% | |
| TTTGCCACATAGTTCTCGAC+TGG | - | chr7.1:19225785-19225804 | None:intergenic | 45.0% | |
| !! | GCAAAACGCTTGTTTTCACC+AGG | + | chr7.1:19226703-19226722 | MS.gene067833:intron | 45.0% |
| !!! | AAAATTTTATATTTGTATTT+TGG | - | chr7.1:19225975-19225994 | None:intergenic | 5.0% |
| AGATGCCGCGTCAAATACTG+AGG | + | chr7.1:19225943-19225962 | MS.gene067833:CDS | 50.0% | |
| ATTGACAGTTGGACTCTCCG+TGG | + | chr7.1:19226302-19226321 | MS.gene067833:CDS | 50.0% | |
| CAGCAATATTTGCAGCCGAG+AGG | + | chr7.1:19226382-19226401 | MS.gene067833:CDS | 50.0% | |
| CTCTTTCAGGAGGAGAAACC+CGG | + | chr7.1:19226102-19226121 | MS.gene067833:intron | 50.0% | |
| GACTGCCAATGCATCTGCAA+AGG | + | chr7.1:19226242-19226261 | MS.gene067833:CDS | 50.0% | |
| GATCAGCCGTCAAAACAAGC+AGG | + | chr7.1:19226421-19226440 | MS.gene067833:CDS | 50.0% | |
| GCATGCAGATATGTGACTGC+TGG | + | chr7.1:19227013-19227032 | MS.gene067833:intron | 50.0% | |
| GCCGTCAAAACAAGCAGGTT+TGG | + | chr7.1:19226426-19226445 | MS.gene067833:intron | 50.0% | |
| GTACAGCTACCTGCATCTCA+CGG | - | chr7.1:19225808-19225827 | None:intergenic | 50.0% | |
| GTATTTGACGCGGCATCTTC+AGG | - | chr7.1:19225941-19225960 | None:intergenic | 50.0% | |
| GTGCATTTAGCAAGGTGGCA+AGG | + | chr7.1:19227053-19227072 | MS.gene067833:CDS | 50.0% | |
| TGTGGCAAACCGTGAGATGC+AGG | + | chr7.1:19225796-19225815 | MS.gene067833:CDS | 55.0% | |
| TTTAGCAAGGTGGCAAGGGC+TGG | + | chr7.1:19227058-19227077 | MS.gene067833:CDS | 55.0% | |
| TTTCAGGAGGAGAAACCCGG+TGG | + | chr7.1:19226105-19226124 | MS.gene067833:intron | 55.0% | |
| GCAAGGGCTGGAAACGTTGC+TGG | + | chr7.1:19227070-19227089 | MS.gene067833:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 19224161 | 19227531 | 19224161 | ID=MS.gene067833 |
| chr7.1 | mRNA | 19224161 | 19227531 | 19224161 | ID=MS.gene067833.t1;Parent=MS.gene067833 |
| chr7.1 | exon | 19224161 | 19224166 | 19224161 | ID=MS.gene067833.t1.exon1;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19224161 | 19224166 | 19224161 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| chr7.1 | exon | 19224298 | 19224401 | 19224298 | ID=MS.gene067833.t1.exon2;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19224298 | 19224401 | 19224298 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| chr7.1 | exon | 19224843 | 19224918 | 19224843 | ID=MS.gene067833.t1.exon3;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19224843 | 19224918 | 19224843 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| chr7.1 | exon | 19225746 | 19225817 | 19225746 | ID=MS.gene067833.t1.exon4;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19225746 | 19225817 | 19225746 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| chr7.1 | exon | 19225902 | 19225964 | 19225902 | ID=MS.gene067833.t1.exon5;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19225902 | 19225964 | 19225902 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| chr7.1 | exon | 19226111 | 19226442 | 19226111 | ID=MS.gene067833.t1.exon6;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19226111 | 19226442 | 19226111 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| chr7.1 | exon | 19227021 | 19227144 | 19227021 | ID=MS.gene067833.t1.exon7;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19227021 | 19227144 | 19227021 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| chr7.1 | exon | 19227505 | 19227531 | 19227505 | ID=MS.gene067833.t1.exon8;Parent=MS.gene067833.t1 |
| chr7.1 | CDS | 19227505 | 19227531 | 19227505 | ID=cds.MS.gene067833.t1;Parent=MS.gene067833.t1 |
| Gene Sequence |
| Protein sequence |
