AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051482


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051482.t1 MTR_7g110390 27.333 150 103 3 5 153 14 158 1.25e-16 81.6
MS.gene051482.t1 MTR_3g095410 27.451 153 104 4 2 153 55 201 1.01e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051482.t1 AT5G09840 26.437 261 157 11 2 240 71 318 2.69e-15 78.2
MS.gene051482.t1 AT3G62210 26.994 163 109 5 1 162 21 174 1.10e-14 74.3
MS.gene051482.t1 AT5G64710 27.273 154 104 5 2 153 60 207 3.17e-13 72.0
MS.gene051482.t1 AT3G62200 26.875 160 107 4 4 162 30 180 7.20e-13 70.5
MS.gene051482.t1 AT2G15560 26.316 152 105 4 5 153 51 198 1.42e-11 66.2
MS.gene051482.t1 AT2G15560 26.316 152 105 4 5 153 51 198 1.81e-11 65.9
MS.gene051482.t1 AT3G62050 29.752 121 70 5 4 121 14 122 6.63e-11 60.8

Find 107 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCGAATAACAACATTTA+TGG 0.129146 1.3:-8154993 None:intergenic
TGTTGAAACCTTGAAGTTTA+TGG 0.131106 1.3:+8153757 MS.gene051482:CDS
TGTAAAGCGTTTAAACTTAC+AGG 0.197901 1.3:+8154821 MS.gene051482:CDS
TGGTGTCCACCGGCGTATTC+TGG 0.214087 1.3:+8153051 MS.gene051482:CDS
ATGGGACCCAATCTCTCCTT+TGG 0.269593 1.3:-8154974 None:intergenic
AACCAGGTTTCGATAGTATA+TGG 0.277742 1.3:-8153900 None:intergenic
TTCTTTAATGTCTGTAACTT+TGG 0.293926 1.3:+8155609 MS.gene051482:CDS
TTTGGAAACGTTAAGAAGAT+AGG 0.317087 1.3:+8153194 MS.gene051482:CDS
ATTCGAATAACAACATTTAT+GGG 0.319102 1.3:-8154992 None:intergenic
GAGAACTGCCGGACTCTAAA+AGG 0.325854 1.3:-8153877 None:intergenic
AGCAATACTTATATTATTCC+TGG 0.335011 1.3:-8155098 None:intergenic
TTCTGAGGCATCCCACTTCC+CGG 0.343788 1.3:-8153807 None:intergenic
GGACTCACTGTGAGAGCATT+TGG 0.344271 1.3:+8153176 MS.gene051482:CDS
TCAATATTGGTCCCAACCTT+AGG 0.345166 1.3:-8155241 None:intergenic
CTTGTACTCGTACTGGTAAA+AGG 0.346241 1.3:-8154780 None:intergenic
ACCTTCTTCCATAAACTTCA+AGG 0.372927 1.3:-8153765 None:intergenic
TGGGACCCAATCTCTCCTTT+GGG 0.373712 1.3:-8154973 None:intergenic
TTATTAGCAACATGCATTCC+TGG 0.376131 1.3:+8153681 MS.gene051482:CDS
CGGAATATTAGAAAATATAA+AGG 0.388369 1.3:+8155756 MS.gene051482:CDS
CTCGTGCTGAACTCAATTCC+AGG 0.394340 1.3:+8155080 MS.gene051482:CDS
CACTTCTATATAATCAATAT+TGG 0.395917 1.3:-8155254 None:intergenic
GACTTGATTGATGCGCCTTC+CGG 0.401622 1.3:+8153254 MS.gene051482:CDS
GGTGTCCACCGGCGTATTCT+GGG 0.404162 1.3:+8153052 MS.gene051482:CDS
TCTCTTCGACTAGGCGGTAT+AGG 0.405051 1.3:+8153143 MS.gene051482:CDS
CAATATTGGTCCCAACCTTA+GGG 0.414014 1.3:-8155240 None:intergenic
GTCAAACCCAAAGGAGAGAT+TGG 0.419092 1.3:+8154967 MS.gene051482:CDS
AATCACTATCACCCGCGATT+AGG 0.434677 1.3:-8153733 None:intergenic
TTTACAGAGGAAGACATTGT+AGG 0.440045 1.3:+8155869 MS.gene051482:intron
ACGGACAAATATCGTGGAAC+TGG 0.444630 1.3:+8153843 MS.gene051482:CDS
TTTGTTCAAACCCTAAGGTT+GGG 0.454926 1.3:+8155230 MS.gene051482:CDS
TCTAAACCACCATTGAGTTT+AGG 0.456749 1.3:-8155684 None:intergenic
CTAGGCGGTATAGGAGTAGA+AGG 0.461409 1.3:+8153152 MS.gene051482:CDS
TAACCGTCGTGCTGAGGAAT+GGG 0.462670 1.3:+8155716 MS.gene051482:CDS
CAATGGTGGTTTAGAGTGGA+TGG 0.462773 1.3:+8155692 MS.gene051482:CDS
TTGGAAACGTTAAGAAGATA+GGG 0.462817 1.3:+8153195 MS.gene051482:CDS
TGGAATTTGTTCAAACCCTA+AGG 0.466799 1.3:+8155225 MS.gene051482:CDS
ATTGATGCGCCTTCCGGCGG+AGG 0.466824 1.3:+8153260 MS.gene051482:CDS
ACCTTGAAGTTTATGGAAGA+AGG 0.468779 1.3:+8153764 MS.gene051482:CDS
TTGAGTTTGCTGAAATTCTC+CGG 0.469079 1.3:+8155580 MS.gene051482:CDS
AAGTCATGATCGCCGGGAAG+TGG 0.469652 1.3:+8153795 MS.gene051482:CDS
GATTAGGAGGATATTTCCCT+TGG 0.476900 1.3:-8153717 None:intergenic
CGCAAACCTTGTACTCGTAC+TGG 0.478424 1.3:-8154787 None:intergenic
CACCGGCGTATTCTGGGATG+TGG 0.484898 1.3:+8153058 MS.gene051482:CDS
AAACTAATATTGCCGTGGCT+TGG 0.492637 1.3:-8155178 None:intergenic
CGAAGGCAATTCAAAGCTGC+AGG 0.493964 1.3:+8153227 MS.gene051482:CDS
TTGCTCAACAATATTGGTGG+AGG 0.495372 1.3:+8155298 MS.gene051482:CDS
ATGTCTGTAACTTTGGTGAA+AGG 0.498599 1.3:+8155616 MS.gene051482:CDS
ATTTGTTCAAACCCTAAGGT+TGG 0.500980 1.3:+8155229 MS.gene051482:CDS
GACTCTAAAAGGACTACGTT+AGG 0.502615 1.3:-8153866 None:intergenic
TCAGAACTGCTGATGGAATA+CGG 0.510494 1.3:+8153824 MS.gene051482:CDS
ACCAGGTTTCGATAGTATAT+GGG 0.513355 1.3:-8153899 None:intergenic
CACTATCACCCGCGATTAGG+AGG 0.515264 1.3:-8153730 None:intergenic
GCTTCTTAGCTGTGGAGGAA+TGG 0.520582 1.3:-8153090 None:intergenic
AGTGTAGGAAATACATGCTC+CGG 0.521068 1.3:-8155031 None:intergenic
GGCATAAAGTCATGATCGCC+GGG 0.521161 1.3:+8153789 MS.gene051482:CDS
TCAAACCCAAAGGAGAGATT+GGG 0.524842 1.3:+8154968 MS.gene051482:CDS
ATAGTATATGGGAGAACTGC+CGG 0.528774 1.3:-8153888 None:intergenic
GGATGCCTCAGAACTGCTGA+TGG 0.536396 1.3:+8153817 MS.gene051482:CDS
GTAACCGTCGTGCTGAGGAA+TGG 0.536553 1.3:+8155715 MS.gene051482:CDS
ATTAGGAGGATATTTCCCTT+GGG 0.539334 1.3:-8153716 None:intergenic
TATTGCTGATGCTTTGCAAT+GGG 0.540134 1.3:+8155114 MS.gene051482:CDS
GGGCATAAAGTCATGATCGC+CGG 0.545017 1.3:+8153788 MS.gene051482:CDS
AGATTAGCTGACAGCCACCT+TGG 0.547787 1.3:+8155205 MS.gene051482:CDS
AGACATTAAAGAACTTCCTC+CGG 0.549304 1.3:-8155599 None:intergenic
GGAGGAAATCGATTAGAGCC+AGG 0.557630 1.3:+8155316 MS.gene051482:CDS
AGTTCATAGCTTCTTAGCTG+TGG 0.560617 1.3:-8153098 None:intergenic
GGAAATATCCTCCTAATCGC+GGG 0.561694 1.3:+8153722 MS.gene051482:CDS
AACTCAATGGTGGTTTAGAG+TGG 0.565618 1.3:+8155688 MS.gene051482:CDS
GTTTAGGCTTCAGCATGACA+TGG 0.572400 1.3:-8155668 None:intergenic
AGTCATGATCGCCGGGAAGT+GGG 0.573165 1.3:+8153796 MS.gene051482:CDS
TTGAAGTTTATGGAAGAAGG+TGG 0.579140 1.3:+8153767 MS.gene051482:CDS
TTGATTGATGCGCCTTCCGG+CGG 0.580215 1.3:+8153257 MS.gene051482:CDS
TTTGGTGAAAGGTTTCTGAT+CGG 0.594767 1.3:+8155627 MS.gene051482:CDS
ACTCAATGGTAACTTTCTTG+TGG 0.596798 1.3:-8155144 None:intergenic
ATGCTGAAGCCTAAACTCAA+TGG 0.597722 1.3:+8155675 MS.gene051482:CDS
TAGGGTTTGAACAAATTCCA+AGG 0.603209 1.3:-8155222 None:intergenic
GGGAAATATCCTCCTAATCG+CGG 0.607421 1.3:+8153721 MS.gene051482:CDS
CAATACTAACCTCCGCCGGA+AGG 0.607674 1.3:-8153269 None:intergenic
TCATAGCTTCTTAGCTGTGG+AGG 0.613657 1.3:-8153095 None:intergenic
TCCCATATACTATCGAAACC+TGG 0.614304 1.3:+8153898 MS.gene051482:CDS
GATGGGTAACCGTCGTGCTG+AGG 0.615512 1.3:+8155710 MS.gene051482:CDS
TGGAACTCGAGTACACTCAA+TGG 0.616193 1.3:-8155158 None:intergenic
TGAAGTTTATGGAAGAAGGT+GGG 0.621230 1.3:+8153768 MS.gene051482:CDS
TGGAAACGTTAAGAAGATAG+GGG 0.627742 1.3:+8153196 MS.gene051482:CDS
CTGAAGCCTAAACTCAATGG+TGG 0.628478 1.3:+8155678 MS.gene051482:CDS
TGTACAAACTAATATTGCCG+TGG 0.637325 1.3:-8155183 None:intergenic
CTGGTCGCGTGAAAATCCCA+AGG 0.638364 1.3:+8153700 MS.gene051482:CDS
GGGCTCCAAATTTCAAAATG+CGG 0.638600 1.3:+8155736 MS.gene051482:CDS
ACAATCATAATGGTGTCCAC+CGG 0.640527 1.3:+8153041 None:intergenic
GTATTCCATCAGCAGTTCTG+AGG 0.642202 1.3:-8153822 None:intergenic
GTATTGCTGATGCTTTGCAA+TGG 0.642280 1.3:+8155113 MS.gene051482:CDS
ATCAGTGCTTCTCTTCGACT+AGG 0.644770 1.3:+8153134 MS.gene051482:CDS
TGGAATACGGACAAATATCG+TGG 0.644990 1.3:+8153837 MS.gene051482:CDS
AATGGTGGTTTAGAGTGGAT+GGG 0.650032 1.3:+8155693 MS.gene051482:CDS
AGATAGGGGATGATGTTCGA+AGG 0.651387 1.3:+8153210 MS.gene051482:CDS
CAAACAATACTAACCTCCGC+CGG 0.657717 1.3:-8153273 None:intergenic
ACAGGATGAGTCAAACCCAA+AGG 0.659275 1.3:+8154958 MS.gene051482:intron
TGTACTCGAGTTCCAAGCCA+CGG 0.661299 1.3:+8155166 MS.gene051482:CDS
ATATTGATTATATAGAAGTG+TGG 0.680795 1.3:+8155257 MS.gene051482:CDS
GAGCCCATTCCTCAGCACGA+CGG 0.681884 1.3:-8155719 None:intergenic
AGTGCTTCTCTTCGACTAGG+CGG 0.682637 1.3:+8153137 MS.gene051482:CDS
GGCGGTATAGGAGTAGAAGG+TGG 0.691425 1.3:+8153155 MS.gene051482:CDS
TGGTCGCGTGAAAATCCCAA+GGG 0.691802 1.3:+8153701 MS.gene051482:CDS
CTCCACATCCCAGAATACGC+CGG 0.692002 1.3:-8153060 None:intergenic
CACATCCCAGAATACGCCGG+TGG 0.692904 1.3:-8153057 None:intergenic
GGTTTGAACAAATTCCAAGG+TGG 0.708113 1.3:-8155219 None:intergenic
AGTTTGCTGAAATTCTCCGG+AGG 0.726467 1.3:+8155583 MS.gene051482:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTAATCAAATGTT+AGG + chr1.3:8154438-8154457 MS.gene051482:intron 15.0%
!!! AAAAGTGTTCTTATTTATAT+TGG - chr1.3:8154702-8154721 None:intergenic 15.0%
!!! AAAGAAAACACTTTAAAAAT+GGG - chr1.3:8153368-8153387 None:intergenic 15.0%
!!! AAAGTGTTCTTATTTATATT+GGG - chr1.3:8154701-8154720 None:intergenic 15.0%
!! AAATGCTTATCAGAATATAA+AGG - chr1.3:8154853-8154872 None:intergenic 20.0%
!! AATGCTTATCAGAATATAAA+GGG - chr1.3:8154852-8154871 None:intergenic 20.0%
!! AATGTTATACTTCTATTGTT+AGG - chr1.3:8154243-8154262 None:intergenic 20.0%
!! AATTATAATTAGACTTTGGA+GGG + chr1.3:8154099-8154118 MS.gene051482:intron 20.0%
!! AATTCGAATAACAACATTTA+TGG - chr1.3:8154996-8155015 None:intergenic 20.0%
!! ACAGAATTATAATTAGACTT+TGG + chr1.3:8154095-8154114 MS.gene051482:intron 20.0%
!! ATGAAAATAAAAAACGTACA+TGG - chr1.3:8155347-8155366 None:intergenic 20.0%
!! ATTCGAATAACAACATTTAT+GGG - chr1.3:8154995-8155014 None:intergenic 20.0%
!! CACTTCTATATAATCAATAT+TGG - chr1.3:8155257-8155276 None:intergenic 20.0%
!! CGGAATATTAGAAAATATAA+AGG + chr1.3:8155756-8155775 MS.gene051482:CDS 20.0%
!! GAATAATTTGATATGATGAT+TGG + chr1.3:8155516-8155535 MS.gene051482:intron 20.0%
!! TCAATAATAAATCATTGAAC+TGG - chr1.3:8155396-8155415 None:intergenic 20.0%
!! TCATAAATTAAAGTTACTCA+AGG - chr1.3:8154408-8154427 None:intergenic 20.0%
!! TGAAATTGAAATTATTGATG+AGG + chr1.3:8153497-8153516 MS.gene051482:intron 20.0%
!! TTACATTATCAAATGTTATC+AGG + chr1.3:8154721-8154740 MS.gene051482:intron 20.0%
!! TTCAATTAAATATTGCAGTT+AGG + chr1.3:8154132-8154151 MS.gene051482:intron 20.0%
!!! AAGTGTTCTTATTTATATTG+GGG - chr1.3:8154700-8154719 None:intergenic 20.0%
!!! AGTTTGGTAATTTTTTAGTT+GGG + chr1.3:8154007-8154026 MS.gene051482:intron 20.0%
!!! ATATTGATTATATAGAAGTG+TGG + chr1.3:8155257-8155276 MS.gene051482:CDS 20.0%
!!! ATGTTTTCATTTCCAAAAAT+AGG - chr1.3:8153972-8153991 None:intergenic 20.0%
!!! CAAAATAAGACAAATTTTAG+AGG - chr1.3:8155841-8155860 None:intergenic 20.0%
!!! CAAAGAAAACACTTTAAAAA+TGG - chr1.3:8153369-8153388 None:intergenic 20.0%
!!! CTCTAAAATTTGTCTTATTT+TGG + chr1.3:8155839-8155858 MS.gene051482:intron 20.0%
!!! TAATCAAATGTTAGGTTTTA+GGG + chr1.3:8154446-8154465 MS.gene051482:intron 20.0%
!!! TGATTTAACATTCCTATTTT+TGG + chr1.3:8153957-8153976 MS.gene051482:intron 20.0%
!!! TTGAGTAACTTTAATTTATG+AGG + chr1.3:8154407-8154426 MS.gene051482:intron 20.0%
!!! TTGTTGAATAATTTTACATG+AGG - chr1.3:8154326-8154345 None:intergenic 20.0%
! AGCAATACTTATATTATTCC+TGG - chr1.3:8155101-8155120 None:intergenic 25.0%
! ATAGTATGATCGTGTATAAT+TGG + chr1.3:8153334-8153353 MS.gene051482:intron 25.0%
! CAAATCTAACAATTTCAACA+AGG + chr1.3:8154296-8154315 MS.gene051482:intron 25.0%
! GAATTATAATTAGACTTTGG+AGG + chr1.3:8154098-8154117 MS.gene051482:intron 25.0%
! TGCAATATTTAATTGAAGAG+CGG - chr1.3:8154129-8154148 None:intergenic 25.0%
! TTCAATTTCACAACATGATT+TGG - chr1.3:8153487-8153506 None:intergenic 25.0%
! TTCTTTAATGTCTGTAACTT+TGG + chr1.3:8155609-8155628 MS.gene051482:CDS 25.0%
! TTGGAAGTAAAAACATATAG+AGG - chr1.3:8154379-8154398 None:intergenic 25.0%
! TTGTAGGTGTAAAAAGAAAT+GGG + chr1.3:8153645-8153664 MS.gene051482:intron 25.0%
! TTTGTAGGTGTAAAAAGAAA+TGG + chr1.3:8153644-8153663 MS.gene051482:intron 25.0%
!! AATTTTGCAAATTTTACAGC+CGG + chr1.3:8155012-8155031 MS.gene051482:CDS 25.0%
!! ACAGCGTTCATAAATATTTT+TGG + chr1.3:8155780-8155799 MS.gene051482:intron 25.0%
!! AGATTGAACATTTTCTGTTT+AGG + chr1.3:8155556-8155575 MS.gene051482:intron 25.0%
!! CAATGTCTAAAATTGCATAT+GGG - chr1.3:8154918-8154937 None:intergenic 25.0%
!! GTAATCAAATGTTAGGTTTT+AGG + chr1.3:8154445-8154464 MS.gene051482:intron 25.0%
!! TCAATGTCTAAAATTGCATA+TGG - chr1.3:8154919-8154938 None:intergenic 25.0%
!!! AATCAAATGTTAGGTTTTAG+GGG + chr1.3:8154447-8154466 MS.gene051482:intron 25.0%
!!! ACTTTTTTGCTCAACAATAT+TGG + chr1.3:8155292-8155311 MS.gene051482:CDS 25.0%
!!! ATATTCCGCATTTTGAAATT+TGG - chr1.3:8155744-8155763 None:intergenic 25.0%
!!! GAGTTTGGTAATTTTTTAGT+TGG + chr1.3:8154006-8154025 MS.gene051482:intron 25.0%
AGCAAAAAAGTTTGCAATAG+TGG - chr1.3:8155283-8155302 None:intergenic 30.0%
AGTTTCAGAATGACATCATA+TGG + chr1.3:8153541-8153560 MS.gene051482:intron 30.0%
ATACACGATCATACTATTCT+GGG - chr1.3:8153331-8153350 None:intergenic 30.0%
CAATCATCAATTACTCAATC+AGG - chr1.3:8155497-8155516 None:intergenic 30.0%
GTTTCAGAATGACATCATAT+GGG + chr1.3:8153542-8153561 MS.gene051482:intron 30.0%
TATACACGATCATACTATTC+TGG - chr1.3:8153332-8153351 None:intergenic 30.0%
TCAAATCGATATAACATGAC+CGG - chr1.3:8154506-8154525 None:intergenic 30.0%
TGAATGAAATGAAACTAACC+AGG - chr1.3:8153919-8153938 None:intergenic 30.0%
TGTTGAAACCTTGAAGTTTA+TGG + chr1.3:8153757-8153776 MS.gene051482:CDS 30.0%
TTGGAAACGTTAAGAAGATA+GGG + chr1.3:8153195-8153214 MS.gene051482:CDS 30.0%
TTTGGAAACGTTAAGAAGAT+AGG + chr1.3:8153194-8153213 MS.gene051482:CDS 30.0%
! TGCTAACGTTTTTCATTTAC+AGG + chr1.3:8154940-8154959 MS.gene051482:intron 30.0%
! TGTAAAGCGTTTAAACTTAC+AGG + chr1.3:8154821-8154840 MS.gene051482:CDS 30.0%
! TTTAGGGGTTTTACTATAGT+TGG + chr1.3:8154462-8154481 MS.gene051482:intron 30.0%
! TTTTTGCTCAACAATATTGG+TGG + chr1.3:8155295-8155314 MS.gene051482:CDS 30.0%
!! GACGATTATCATGTTTTTGT+AGG + chr1.3:8153629-8153648 MS.gene051482:intron 30.0%
!! GTGATTTTATTTCTCCTTAC+TGG + chr1.3:8153601-8153620 MS.gene051482:intron 30.0%
!!! TCTTTGATGTTTTCAAGTGT+AGG - chr1.3:8155049-8155068 None:intergenic 30.0%
!!! TTTTGGTTGTTTCTTTACAG+AGG + chr1.3:8155856-8155875 MS.gene051482:intron 30.0%
AAACTTACTGTAGGATGGTA+TGG + chr1.3:8154157-8154176 MS.gene051482:intron 35.0%
AACCAGGTTTCGATAGTATA+TGG - chr1.3:8153903-8153922 None:intergenic 35.0%
AAGTTACTCAAGGACTATGT+TGG - chr1.3:8154398-8154417 None:intergenic 35.0%
ACCAGGTTTCGATAGTATAT+GGG - chr1.3:8153902-8153921 None:intergenic 35.0%
ACCTTCTTCCATAAACTTCA+AGG - chr1.3:8153768-8153787 None:intergenic 35.0%
ACCTTGAAGTTTATGGAAGA+AGG + chr1.3:8153764-8153783 MS.gene051482:CDS 35.0%
ACTCAATGGTAACTTTCTTG+TGG - chr1.3:8155147-8155166 None:intergenic 35.0%
AGACATTAAAGAACTTCCTC+CGG - chr1.3:8155602-8155621 None:intergenic 35.0%
AGTTAGGAGAAACTTACTGT+AGG + chr1.3:8154148-8154167 MS.gene051482:intron 35.0%
ATGTCTGTAACTTTGGTGAA+AGG + chr1.3:8155616-8155635 MS.gene051482:CDS 35.0%
ATTAGGAGGATATTTCCCTT+GGG - chr1.3:8153719-8153738 None:intergenic 35.0%
ATTTGTTCAAACCCTAAGGT+TGG + chr1.3:8155229-8155248 MS.gene051482:CDS 35.0%
CAAACTTAGTACTGTCATCA+AGG - chr1.3:8154673-8154692 None:intergenic 35.0%
CTATTAGAGTTATCACAGCT+GGG + chr1.3:8154051-8154070 MS.gene051482:intron 35.0%
GGAAATGAAAACATTGAGAG+AGG + chr1.3:8153978-8153997 MS.gene051482:intron 35.0%
GGACTAACTAATTCTGTTAG+TGG + chr1.3:8154072-8154091 MS.gene051482:intron 35.0%
GTAGCTCAAGAATCAAGATT+TGG - chr1.3:8154580-8154599 None:intergenic 35.0%
TAGGGTTTGAACAAATTCCA+AGG - chr1.3:8155225-8155244 None:intergenic 35.0%
TATTGCTGATGCTTTGCAAT+GGG + chr1.3:8155114-8155133 MS.gene051482:CDS 35.0%
TCTAAACCACCATTGAGTTT+AGG - chr1.3:8155687-8155706 None:intergenic 35.0%
TCTATTAGAGTTATCACAGC+TGG + chr1.3:8154050-8154069 MS.gene051482:intron 35.0%
TGAAGTTTATGGAAGAAGGT+GGG + chr1.3:8153768-8153787 MS.gene051482:CDS 35.0%
TGGAAACGTTAAGAAGATAG+GGG + chr1.3:8153196-8153215 MS.gene051482:CDS 35.0%
TGTACAAACTAATATTGCCG+TGG - chr1.3:8155186-8155205 None:intergenic 35.0%
TTATTAGCAACATGCATTCC+TGG + chr1.3:8153681-8153700 MS.gene051482:CDS 35.0%
TTGAAGTTTATGGAAGAAGG+TGG + chr1.3:8153767-8153786 MS.gene051482:CDS 35.0%
TTGTTACAGACTTACAGTCA+TGG - chr1.3:8154279-8154298 None:intergenic 35.0%
TTTACAGAGGAAGACATTGT+AGG + chr1.3:8155869-8155888 MS.gene051482:intron 35.0%
TTTGGTGAAAGGTTTCTGAT+CGG + chr1.3:8155627-8155646 MS.gene051482:CDS 35.0%
TTTGTTCAAACCCTAAGGTT+GGG + chr1.3:8155230-8155249 MS.gene051482:CDS 35.0%
! AAAACGTACATGGATTTTCC+TGG - chr1.3:8155337-8155356 None:intergenic 35.0%
! ACACTTTAAAAATGGGTTCC+AGG - chr1.3:8153361-8153380 None:intergenic 35.0%
! ATTGAAGGCATACACTGTAA+GGG - chr1.3:8154894-8154913 None:intergenic 35.0%
! CTCAAGAATCAAGATTTGGT+AGG - chr1.3:8154576-8154595 None:intergenic 35.0%
! TGGAATTTGTTCAAACCCTA+AGG + chr1.3:8155225-8155244 MS.gene051482:CDS 35.0%
!! AAATTGCATATGGGCATTGA+AGG - chr1.3:8154909-8154928 None:intergenic 35.0%
!! ATAAGCATTTGTTGTGCCAA+GGG + chr1.3:8154863-8154882 MS.gene051482:intron 35.0%
!! TTGAGTTTGCTGAAATTCTC+CGG + chr1.3:8155580-8155599 MS.gene051482:CDS 35.0%
AAACTAATATTGCCGTGGCT+TGG - chr1.3:8155181-8155200 None:intergenic 40.0%
AACTCAATGGTGGTTTAGAG+TGG + chr1.3:8155688-8155707 MS.gene051482:CDS 40.0%
AGGAGAAACTTACTGTAGGA+TGG + chr1.3:8154152-8154171 MS.gene051482:intron 40.0%
AGTGTAGGAAATACATGCTC+CGG - chr1.3:8155034-8155053 None:intergenic 40.0%
AGTTCATAGCTTCTTAGCTG+TGG - chr1.3:8153101-8153120 None:intergenic 40.0%
ATAATCGTCAGTAGCCAGTA+AGG - chr1.3:8153618-8153637 None:intergenic 40.0%
ATAGTATATGGGAGAACTGC+CGG - chr1.3:8153891-8153910 None:intergenic 40.0%
ATGCTGAAGCCTAAACTCAA+TGG + chr1.3:8155675-8155694 MS.gene051482:CDS 40.0%
CAATATTGGTCCCAACCTTA+GGG - chr1.3:8155243-8155262 None:intergenic 40.0%
GATTAGGAGGATATTTCCCT+TGG - chr1.3:8153720-8153739 None:intergenic 40.0%
GGGCTCCAAATTTCAAAATG+CGG + chr1.3:8155736-8155755 MS.gene051482:CDS 40.0%
GGTTTGAACAAATTCCAAGG+TGG - chr1.3:8155222-8155241 None:intergenic 40.0%
GTATTGCTGATGCTTTGCAA+TGG + chr1.3:8155113-8155132 MS.gene051482:CDS 40.0%
GTTTCCTTCTTCAAGAGAGA+AGG - chr1.3:8154204-8154223 None:intergenic 40.0%
TCAAACCCAAAGGAGAGATT+GGG + chr1.3:8154968-8154987 MS.gene051482:CDS 40.0%
TCAATATTGGTCCCAACCTT+AGG - chr1.3:8155244-8155263 None:intergenic 40.0%
TCAGAACTGCTGATGGAATA+CGG + chr1.3:8153824-8153843 MS.gene051482:CDS 40.0%
TCCCATATACTATCGAAACC+TGG + chr1.3:8153898-8153917 MS.gene051482:CDS 40.0%
TGATCGTGTATAATTGGTCC+TGG + chr1.3:8153340-8153359 MS.gene051482:intron 40.0%
TGGAATACGGACAAATATCG+TGG + chr1.3:8153837-8153856 MS.gene051482:CDS 40.0%
TTGAGAGAGGTAGTAGAGTT+TGG + chr1.3:8153991-8154010 MS.gene051482:intron 40.0%
TTGCCGCAAAATCATAGAGA+CGG - chr1.3:8154542-8154561 None:intergenic 40.0%
TTGCTCAACAATATTGGTGG+AGG + chr1.3:8155298-8155317 MS.gene051482:CDS 40.0%
! AATGGTGGTTTAGAGTGGAT+GGG + chr1.3:8155693-8155712 MS.gene051482:CDS 40.0%
! CAACCGTCTCTATGATTTTG+CGG + chr1.3:8154536-8154555 MS.gene051482:intron 40.0%
! CATTGAAGGCATACACTGTA+AGG - chr1.3:8154895-8154914 None:intergenic 40.0%
! CTTGTACTCGTACTGGTAAA+AGG - chr1.3:8154783-8154802 None:intergenic 40.0%
! CTTTTACCAGTACGAGTACA+AGG + chr1.3:8154781-8154800 MS.gene051482:CDS 40.0%
! GAATCAAGATTTGGTAGGAG+AGG - chr1.3:8154571-8154590 None:intergenic 40.0%
! GACTCTAAAAGGACTACGTT+AGG - chr1.3:8153869-8153888 None:intergenic 40.0%
!! GATAAGCATTTGTTGTGCCA+AGG + chr1.3:8154862-8154881 MS.gene051482:intron 40.0%
!!! AACGTAGTCCTTTTAGAGTC+CGG + chr1.3:8153869-8153888 MS.gene051482:CDS 40.0%
AATCACTATCACCCGCGATT+AGG - chr1.3:8153736-8153755 None:intergenic 45.0%
ACAGGATGAGTCAAACCCAA+AGG + chr1.3:8154958-8154977 MS.gene051482:intron 45.0%
ACGGACAAATATCGTGGAAC+TGG + chr1.3:8153843-8153862 MS.gene051482:CDS 45.0%
AGATAGGGGATGATGTTCGA+AGG + chr1.3:8153210-8153229 MS.gene051482:CDS 45.0%
ATCAGTGCTTCTCTTCGACT+AGG + chr1.3:8153134-8153153 MS.gene051482:CDS 45.0%
CAAACAATACTAACCTCCGC+CGG - chr1.3:8153276-8153295 None:intergenic 45.0%
CTGAAGCCTAAACTCAATGG+TGG + chr1.3:8155678-8155697 MS.gene051482:CDS 45.0%
GACCGGAAAAGATACAGCTT+GGG - chr1.3:8154489-8154508 None:intergenic 45.0%
GGAAATATCCTCCTAATCGC+GGG + chr1.3:8153722-8153741 MS.gene051482:CDS 45.0%
GGGAAATATCCTCCTAATCG+CGG + chr1.3:8153721-8153740 MS.gene051482:CDS 45.0%
GGTAGACAAGATCGTGTTTC+AGG - chr1.3:8154652-8154671 None:intergenic 45.0%
GTATTCCATCAGCAGTTCTG+AGG - chr1.3:8153825-8153844 None:intergenic 45.0%
GTCAAACCCAAAGGAGAGAT+TGG + chr1.3:8154967-8154986 MS.gene051482:CDS 45.0%
GTTTAGGCTTCAGCATGACA+TGG - chr1.3:8155671-8155690 None:intergenic 45.0%
TAGGATGGTATGGTATAGCC+TGG + chr1.3:8154167-8154186 MS.gene051482:intron 45.0%
TCATAGCTTCTTAGCTGTGG+AGG - chr1.3:8153098-8153117 None:intergenic 45.0%
TGACCGGAAAAGATACAGCT+TGG - chr1.3:8154490-8154509 None:intergenic 45.0%
TGGAACTCGAGTACACTCAA+TGG - chr1.3:8155161-8155180 None:intergenic 45.0%
TGTGCCTTCTCTCTTGAAGA+AGG + chr1.3:8154197-8154216 MS.gene051482:intron 45.0%
TTCACAATGTAGCAACCCCT+TGG - chr1.3:8154612-8154631 None:intergenic 45.0%
! CAATGGTGGTTTAGAGTGGA+TGG + chr1.3:8155692-8155711 MS.gene051482:CDS 45.0%
! CGTACTGGTAAAAGGCTACA+AGG - chr1.3:8154775-8154794 None:intergenic 45.0%
! GACCCAAGCTGTATCTTTTC+CGG + chr1.3:8154484-8154503 MS.gene051482:intron 45.0%
!! AGTTTGCTGAAATTCTCCGG+AGG + chr1.3:8155583-8155602 MS.gene051482:CDS 45.0%
AGTGCTTCTCTTCGACTAGG+CGG + chr1.3:8153137-8153156 MS.gene051482:CDS 50.0%
ATGGGACCCAATCTCTCCTT+TGG - chr1.3:8154977-8154996 None:intergenic 50.0%
CACTGTAAGGGTTTGACCCT+TGG - chr1.3:8154882-8154901 None:intergenic 50.0%
CGAAGGCAATTCAAAGCTGC+AGG + chr1.3:8153227-8153246 MS.gene051482:CDS 50.0%
CGCAAACCTTGTACTCGTAC+TGG - chr1.3:8154790-8154809 None:intergenic 50.0%
CTAGGCGGTATAGGAGTAGA+AGG + chr1.3:8153152-8153171 MS.gene051482:CDS 50.0%
CTCGTGCTGAACTCAATTCC+AGG + chr1.3:8155080-8155099 MS.gene051482:CDS 50.0%
GACTTGATTGATGCGCCTTC+CGG + chr1.3:8153254-8153273 MS.gene051482:CDS 50.0%
GAGAACTGCCGGACTCTAAA+AGG - chr1.3:8153880-8153899 None:intergenic 50.0%
GATGGTATGGTATAGCCTGG+AGG + chr1.3:8154170-8154189 MS.gene051482:intron 50.0%
GCTTCTTAGCTGTGGAGGAA+TGG - chr1.3:8153093-8153112 None:intergenic 50.0%
GGAGGAAATCGATTAGAGCC+AGG + chr1.3:8155316-8155335 MS.gene051482:CDS 50.0%
GGCATAAAGTCATGATCGCC+GGG + chr1.3:8153789-8153808 MS.gene051482:CDS 50.0%
GGGCATAAAGTCATGATCGC+CGG + chr1.3:8153788-8153807 MS.gene051482:CDS 50.0%
TAACCGTCGTGCTGAGGAAT+GGG + chr1.3:8155716-8155735 MS.gene051482:CDS 50.0%
TCTCTTCGACTAGGCGGTAT+AGG + chr1.3:8153143-8153162 MS.gene051482:CDS 50.0%
TGGGACCCAATCTCTCCTTT+GGG - chr1.3:8154976-8154995 None:intergenic 50.0%
TGGTCGCGTGAAAATCCCAA+GGG + chr1.3:8153701-8153720 MS.gene051482:CDS 50.0%
TGTACTCGAGTTCCAAGCCA+CGG + chr1.3:8155166-8155185 MS.gene051482:CDS 50.0%
! AGATTAGCTGACAGCCACCT+TGG + chr1.3:8155205-8155224 MS.gene051482:CDS 50.0%
!! GGACTCACTGTGAGAGCATT+TGG + chr1.3:8153176-8153195 MS.gene051482:CDS 50.0%
AAGTCATGATCGCCGGGAAG+TGG + chr1.3:8153795-8153814 MS.gene051482:CDS 55.0%
AGTCATGATCGCCGGGAAGT+GGG + chr1.3:8153796-8153815 MS.gene051482:CDS 55.0%
CAATACTAACCTCCGCCGGA+AGG - chr1.3:8153272-8153291 None:intergenic 55.0%
CACTATCACCCGCGATTAGG+AGG - chr1.3:8153733-8153752 None:intergenic 55.0%
CTCCACATCCCAGAATACGC+CGG - chr1.3:8153063-8153082 None:intergenic 55.0%
CTGGTCGCGTGAAAATCCCA+AGG + chr1.3:8153700-8153719 MS.gene051482:CDS 55.0%
GGATGCCTCAGAACTGCTGA+TGG + chr1.3:8153817-8153836 MS.gene051482:CDS 55.0%
GGCGGTATAGGAGTAGAAGG+TGG + chr1.3:8153155-8153174 MS.gene051482:CDS 55.0%
GTAACCGTCGTGCTGAGGAA+TGG + chr1.3:8155715-8155734 MS.gene051482:CDS 55.0%
TTGATTGATGCGCCTTCCGG+CGG + chr1.3:8153257-8153276 MS.gene051482:CDS 55.0%
! CTTGGGATTTTCACGCGACC+AGG - chr1.3:8153702-8153721 None:intergenic 55.0%
!! TTCTGAGGCATCCCACTTCC+CGG - chr1.3:8153810-8153829 None:intergenic 55.0%
AGCTACACGAGCTCGCCAAG+GGG + chr1.3:8154594-8154613 MS.gene051482:intron 60.0%
CACATCCCAGAATACGCCGG+TGG - chr1.3:8153060-8153079 None:intergenic 60.0%
GAGCCCATTCCTCAGCACGA+CGG - chr1.3:8155722-8155741 None:intergenic 60.0%
GAGCTACACGAGCTCGCCAA+GGG + chr1.3:8154593-8154612 MS.gene051482:intron 60.0%
GATGGGTAACCGTCGTGCTG+AGG + chr1.3:8155710-8155729 MS.gene051482:CDS 60.0%
GGTGTCCACCGGCGTATTCT+GGG + chr1.3:8153052-8153071 MS.gene051482:CDS 60.0%
TGAGCTACACGAGCTCGCCA+AGG + chr1.3:8154592-8154611 MS.gene051482:intron 60.0%
TGGTGTCCACCGGCGTATTC+TGG + chr1.3:8153051-8153070 MS.gene051482:CDS 60.0%
! GAGAAGGCACAGACACCTCC+AGG - chr1.3:8154188-8154207 None:intergenic 60.0%
!! CACCGGCGTATTCTGGGATG+TGG + chr1.3:8153058-8153077 MS.gene051482:CDS 60.0%
ATTGATGCGCCTTCCGGCGG+AGG + chr1.3:8153260-8153279 MS.gene051482:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 8153050 8155910 8153050 ID=MS.gene051482
chr1.3 mRNA 8153050 8155910 8153050 ID=MS.gene051482.t1;Parent=MS.gene051482
chr1.3 exon 8153050 8153281 8153050 ID=MS.gene051482.t1.exon1;Parent=MS.gene051482.t1
chr1.3 CDS 8153050 8153281 8153050 ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1
chr1.3 exon 8153651 8153919 8153651 ID=MS.gene051482.t1.exon2;Parent=MS.gene051482.t1
chr1.3 CDS 8153651 8153919 8153651 ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1
chr1.3 exon 8154780 8154842 8154780 ID=MS.gene051482.t1.exon3;Parent=MS.gene051482.t1
chr1.3 CDS 8154780 8154842 8154780 ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1
chr1.3 exon 8154962 8155347 8154962 ID=MS.gene051482.t1.exon4;Parent=MS.gene051482.t1
chr1.3 CDS 8154962 8155347 8154962 ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1
chr1.3 exon 8155578 8155777 8155578 ID=MS.gene051482.t1.exon5;Parent=MS.gene051482.t1
chr1.3 CDS 8155578 8155777 8155578 ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1
chr1.3 exon 8155876 8155910 8155876 ID=MS.gene051482.t1.exon6;Parent=MS.gene051482.t1
chr1.3 CDS 8155876 8155910 8155876 ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1
Gene Sequence

>MS.gene051482

ATGGTGTCCACCGGCGTATTCTGGGATGTGGAGAACTGTTCCATTCCTCCACAGCTAAGAAGCTATGAACTGATTAAACGAAGAATCAGTGCTTCTCTTCGACTAGGCGGTATAGGAGTAGAAGGTGGACTCACTGTGAGAGCATTTGGAAACGTTAAGAAGATAGGGGATGATGTTCGAAGGCAATTCAAAGCTGCAGGTGTTGACTTGATTGATGCGCCTTCCGGCGGAGGTTAGTATTGTTTGTTTAACTCTTCATTTCTTATGCTTTATGTCAACCCAGAATAGTATGATCGTGTATAATTGGTCCTGGAACCCATTTTTAAAGTGTTTTCTTTGAGACTTATGAGTTTGATTTATTTGTTTTAGACTAACAATACTTTGTAATGAGCTAATTTTTGATTGACGATAATTTGTATTATAAAGATTAACAGCCAAATCATGTTGTGAAATTGAAATTATTGATGAGGATAGATATAAGAGATGAGACAAGTTTCAGAATGACATCATATGGGTCTGATGTTATGATTAATGTTGCGATTATATGATTTGTGATTTTATTTCTCCTTACTGGCTACTGACGATTATCATGTTTTTGTAGGTGTAAAAAGAAATGGGTCTGATGTTATGCTTATTAGCAACATGCATTCCTGGTCGCGTGAAAATCCCAAGGGAAATATCCTCCTAATCGCGGGTGATAGTGATTATGTTGAAACCTTGAAGTTTATGGAAGAAGGTGGGCATAAAGTCATGATCGCCGGGAAGTGGGATGCCTCAGAACTGCTGATGGAATACGGACAAATATCGTGGAACTGGCCTAACGTAGTCCTTTTAGAGTCCGGCAGTTCTCCCATATACTATCGAAACCTGGTTAGTTTCATTTCATTCAATTTACTTCTTTTTGCACTGATTTAACATTCCTATTTTTGGAAATGAAAACATTGAGAGAGGTAGTAGAGTTTGGTAATTTTTTAGTTGGGTAACTAATTATTTTAGTGATTCTATTAGAGTTATCACAGCTGGGACTAACTAATTCTGTTAGTGGACAGAATTATAATTAGACTTTGGAGGGAAAGCCGCTCTTCAATTAAATATTGCAGTTAGGAGAAACTTACTGTAGGATGGTATGGTATAGCCTGGAGGTGTCTGTGCCTTCTCTCTTGAAGAAGGAAACATTATGCTAAGTAAAACCTAACAATAGAAGTATAACATTCATGTAGCTTTCACCATGACTGTAAGTCTGTAACAAATCTAACAATTTCAACAAGGCTCGCCTCATGTAAAATTATTCAACAATAAGCAATATACTAACATTCATGTAAAACACCTCTATATGTTTTTACTTCCAACATAGTCCTTGAGTAACTTTAATTTATGAGGAAAGAGTTTAAAATTGTAATCAAATGTTAGGTTTTAGGGGTTTTACTATAGTTGGACCCAAGCTGTATCTTTTCCGGTCATGTTATATCGATTTGAACGCACGATTCAACCGTCTCTATGATTTTGCGGCAATCTCTTCCTCTCCTACCAAATCTTGATTCTTGAGCTACACGAGCTCGCCAAGGGGTTGCTACATTGTGAACTCATACGATCTTATGTCCTGAAACACGATCTTGTCTACCTTGATGACAGTACTAAGTTTGTTTTCCCCAATATAAATAAGAACACTTTTTACATTATCAAATGTTATCAGGTAAGATTTTATTAATTTTCTAGTATATTCCTTGTAGCCTTTTACCAGTACGAGTACAAGGTTTGCGACTAGACTAGCTGTAAAGCGTTTAAACTTACAGGTTTTTCCCTTTATATTCTGATAAGCATTTGTTGTGCCAAGGGTCAAACCCTTACAGTGTATGCCTTCAATGCCCATATGCAATTTTAGACATTGATTGCTAACGTTTTTCATTTACAGGATGAGTCAAACCCAAAGGAGAGATTGGGTCCCATAAATGTTGTTATTCGAATTTTGCAAATTTTACAGCCGGAGCATGTATTTCCTACACTTGAAAACATCAAAGAATGCTATGATGCTCGTGCTGAACTCAATTCCAGGAATAATATAAGTATTGCTGATGCTTTGCAATGGGCATGTGACCACAAGAAAGTTACCATTGAGTGTACTCGAGTTCCAAGCCACGGCAATATTAGTTTGTACAGATTAGCTGACAGCCACCTTGGAATTTGTTCAAACCCTAAGGTTGGGACCAATATTGATTATATAGAAGTGTGGCCACTATTGCAAACTTTTTTGCTCAACAATATTGGTGGAGGAAATCGATTAGAGCCAGGAAAATCCATGTACGTTTTTTATTTTCATTTTAATTGCACTCTTTTATATTTTGTCCAGTTCAATGATTTATTATTGAAAATTAATGTTAAGCGATGATTGTGTAATTCTTGTTATATTAAATATGAATAATTTGAGTAATTGAGCTCAATTATTTCCTGATTGAGTAATTGATGATTGAATAATTTGATATGATGATTGGAGTATAAGTTGAAATTAAGATTGAACATTTTCTGTTTAGGTTTGAGTTTGCTGAAATTCTCCGGAGGAAGTTCTTTAATGTCTGTAACTTTGGTGAAAGGTTTCTGATCGGTGATATATTAACTGTAATCCATGTCATGCTGAAGCCTAAACTCAATGGTGGTTTAGAGTGGATGGGTAACCGTCGTGCTGAGGAATGGGCTCCAAATTTCAAAATGCGGAATATTAGAAAATATAAAGGTACAGCGTTCATAAATATTTTTGGTAGCTACAAAATTGATAGTAAGATTTATTTTTACACCTCTAAAATTTGTCTTATTTTGGTTGTTTCTTTACAGAGGAAGACATTGTAGGCGTAGCTTCAAGACCTTGA

Protein sequence

>MS.gene051482.t1

MVSTGVFWDVENCSIPPQLRSYELIKRRISASLRLGGIGVEGGLTVRAFGNVKKIGDDVRRQFKAAGVDLIDAPSGGGVKRNGSDVMLISNMHSWSRENPKGNILLIAGDSDYVETLKFMEEGGHKVMIAGKWDASELLMEYGQISWNWPNVVLLESGSSPIYYRNLPFTSTSTRFATRLAVKRLNLQDESNPKERLGPINVVIRILQILQPEHVFPTLENIKECYDARAELNSRNNISIADALQWACDHKKVTIECTRVPSHGNISLYRLADSHLGICSNPKVGTNIDYIEVWPLLQTFLLNNIGGGNRLEPGKSMFEFAEILRRKFFNVCNFGERFLIGDILTVIHVMLKPKLNGGLEWMGNRRAEEWAPNFKMRNIRKYKEEDIVGVASRP