Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051482.t1 | XP_022562014.1 | 30.8 | 159 | 103 | 3 | 4 | 161 | 19 | 171 | 4.90E-15 | 92.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051482.t1 | A0A2H5Q4M8 | 28.0 | 157 | 106 | 4 | 2 | 157 | 50 | 200 | 1.0e-14 | 90.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene007962 | MS.gene051482 | PPI |
MS.gene30034 | MS.gene051482 | PPI |
MS.gene99888 | MS.gene051482 | PPI |
MS.gene039955 | MS.gene051482 | PPI |
MS.gene65952 | MS.gene051482 | PPI |
MS.gene026616 | MS.gene051482 | PPI |
MS.gene67910 | MS.gene051482 | PPI |
MS.gene054900 | MS.gene051482 | PPI |
MS.gene031882 | MS.gene051482 | PPI |
MS.gene30285 | MS.gene051482 | PPI |
MS.gene33586 | MS.gene051482 | PPI |
MS.gene62998 | MS.gene051482 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051482.t1 | MTR_7g110390 | 27.333 | 150 | 103 | 3 | 5 | 153 | 14 | 158 | 1.25e-16 | 81.6 |
MS.gene051482.t1 | MTR_3g095410 | 27.451 | 153 | 104 | 4 | 2 | 153 | 55 | 201 | 1.01e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051482.t1 | AT5G09840 | 26.437 | 261 | 157 | 11 | 2 | 240 | 71 | 318 | 2.69e-15 | 78.2 |
MS.gene051482.t1 | AT3G62210 | 26.994 | 163 | 109 | 5 | 1 | 162 | 21 | 174 | 1.10e-14 | 74.3 |
MS.gene051482.t1 | AT5G64710 | 27.273 | 154 | 104 | 5 | 2 | 153 | 60 | 207 | 3.17e-13 | 72.0 |
MS.gene051482.t1 | AT3G62200 | 26.875 | 160 | 107 | 4 | 4 | 162 | 30 | 180 | 7.20e-13 | 70.5 |
MS.gene051482.t1 | AT2G15560 | 26.316 | 152 | 105 | 4 | 5 | 153 | 51 | 198 | 1.42e-11 | 66.2 |
MS.gene051482.t1 | AT2G15560 | 26.316 | 152 | 105 | 4 | 5 | 153 | 51 | 198 | 1.81e-11 | 65.9 |
MS.gene051482.t1 | AT3G62050 | 29.752 | 121 | 70 | 5 | 4 | 121 | 14 | 122 | 6.63e-11 | 60.8 |
Find 107 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCGAATAACAACATTTA+TGG | 0.129146 | 1.3:-8154993 | None:intergenic |
TGTTGAAACCTTGAAGTTTA+TGG | 0.131106 | 1.3:+8153757 | MS.gene051482:CDS |
TGTAAAGCGTTTAAACTTAC+AGG | 0.197901 | 1.3:+8154821 | MS.gene051482:CDS |
TGGTGTCCACCGGCGTATTC+TGG | 0.214087 | 1.3:+8153051 | MS.gene051482:CDS |
ATGGGACCCAATCTCTCCTT+TGG | 0.269593 | 1.3:-8154974 | None:intergenic |
AACCAGGTTTCGATAGTATA+TGG | 0.277742 | 1.3:-8153900 | None:intergenic |
TTCTTTAATGTCTGTAACTT+TGG | 0.293926 | 1.3:+8155609 | MS.gene051482:CDS |
TTTGGAAACGTTAAGAAGAT+AGG | 0.317087 | 1.3:+8153194 | MS.gene051482:CDS |
ATTCGAATAACAACATTTAT+GGG | 0.319102 | 1.3:-8154992 | None:intergenic |
GAGAACTGCCGGACTCTAAA+AGG | 0.325854 | 1.3:-8153877 | None:intergenic |
AGCAATACTTATATTATTCC+TGG | 0.335011 | 1.3:-8155098 | None:intergenic |
TTCTGAGGCATCCCACTTCC+CGG | 0.343788 | 1.3:-8153807 | None:intergenic |
GGACTCACTGTGAGAGCATT+TGG | 0.344271 | 1.3:+8153176 | MS.gene051482:CDS |
TCAATATTGGTCCCAACCTT+AGG | 0.345166 | 1.3:-8155241 | None:intergenic |
CTTGTACTCGTACTGGTAAA+AGG | 0.346241 | 1.3:-8154780 | None:intergenic |
ACCTTCTTCCATAAACTTCA+AGG | 0.372927 | 1.3:-8153765 | None:intergenic |
TGGGACCCAATCTCTCCTTT+GGG | 0.373712 | 1.3:-8154973 | None:intergenic |
TTATTAGCAACATGCATTCC+TGG | 0.376131 | 1.3:+8153681 | MS.gene051482:CDS |
CGGAATATTAGAAAATATAA+AGG | 0.388369 | 1.3:+8155756 | MS.gene051482:CDS |
CTCGTGCTGAACTCAATTCC+AGG | 0.394340 | 1.3:+8155080 | MS.gene051482:CDS |
CACTTCTATATAATCAATAT+TGG | 0.395917 | 1.3:-8155254 | None:intergenic |
GACTTGATTGATGCGCCTTC+CGG | 0.401622 | 1.3:+8153254 | MS.gene051482:CDS |
GGTGTCCACCGGCGTATTCT+GGG | 0.404162 | 1.3:+8153052 | MS.gene051482:CDS |
TCTCTTCGACTAGGCGGTAT+AGG | 0.405051 | 1.3:+8153143 | MS.gene051482:CDS |
CAATATTGGTCCCAACCTTA+GGG | 0.414014 | 1.3:-8155240 | None:intergenic |
GTCAAACCCAAAGGAGAGAT+TGG | 0.419092 | 1.3:+8154967 | MS.gene051482:CDS |
AATCACTATCACCCGCGATT+AGG | 0.434677 | 1.3:-8153733 | None:intergenic |
TTTACAGAGGAAGACATTGT+AGG | 0.440045 | 1.3:+8155869 | MS.gene051482:intron |
ACGGACAAATATCGTGGAAC+TGG | 0.444630 | 1.3:+8153843 | MS.gene051482:CDS |
TTTGTTCAAACCCTAAGGTT+GGG | 0.454926 | 1.3:+8155230 | MS.gene051482:CDS |
TCTAAACCACCATTGAGTTT+AGG | 0.456749 | 1.3:-8155684 | None:intergenic |
CTAGGCGGTATAGGAGTAGA+AGG | 0.461409 | 1.3:+8153152 | MS.gene051482:CDS |
TAACCGTCGTGCTGAGGAAT+GGG | 0.462670 | 1.3:+8155716 | MS.gene051482:CDS |
CAATGGTGGTTTAGAGTGGA+TGG | 0.462773 | 1.3:+8155692 | MS.gene051482:CDS |
TTGGAAACGTTAAGAAGATA+GGG | 0.462817 | 1.3:+8153195 | MS.gene051482:CDS |
TGGAATTTGTTCAAACCCTA+AGG | 0.466799 | 1.3:+8155225 | MS.gene051482:CDS |
ATTGATGCGCCTTCCGGCGG+AGG | 0.466824 | 1.3:+8153260 | MS.gene051482:CDS |
ACCTTGAAGTTTATGGAAGA+AGG | 0.468779 | 1.3:+8153764 | MS.gene051482:CDS |
TTGAGTTTGCTGAAATTCTC+CGG | 0.469079 | 1.3:+8155580 | MS.gene051482:CDS |
AAGTCATGATCGCCGGGAAG+TGG | 0.469652 | 1.3:+8153795 | MS.gene051482:CDS |
GATTAGGAGGATATTTCCCT+TGG | 0.476900 | 1.3:-8153717 | None:intergenic |
CGCAAACCTTGTACTCGTAC+TGG | 0.478424 | 1.3:-8154787 | None:intergenic |
CACCGGCGTATTCTGGGATG+TGG | 0.484898 | 1.3:+8153058 | MS.gene051482:CDS |
AAACTAATATTGCCGTGGCT+TGG | 0.492637 | 1.3:-8155178 | None:intergenic |
CGAAGGCAATTCAAAGCTGC+AGG | 0.493964 | 1.3:+8153227 | MS.gene051482:CDS |
TTGCTCAACAATATTGGTGG+AGG | 0.495372 | 1.3:+8155298 | MS.gene051482:CDS |
ATGTCTGTAACTTTGGTGAA+AGG | 0.498599 | 1.3:+8155616 | MS.gene051482:CDS |
ATTTGTTCAAACCCTAAGGT+TGG | 0.500980 | 1.3:+8155229 | MS.gene051482:CDS |
GACTCTAAAAGGACTACGTT+AGG | 0.502615 | 1.3:-8153866 | None:intergenic |
TCAGAACTGCTGATGGAATA+CGG | 0.510494 | 1.3:+8153824 | MS.gene051482:CDS |
ACCAGGTTTCGATAGTATAT+GGG | 0.513355 | 1.3:-8153899 | None:intergenic |
CACTATCACCCGCGATTAGG+AGG | 0.515264 | 1.3:-8153730 | None:intergenic |
GCTTCTTAGCTGTGGAGGAA+TGG | 0.520582 | 1.3:-8153090 | None:intergenic |
AGTGTAGGAAATACATGCTC+CGG | 0.521068 | 1.3:-8155031 | None:intergenic |
GGCATAAAGTCATGATCGCC+GGG | 0.521161 | 1.3:+8153789 | MS.gene051482:CDS |
TCAAACCCAAAGGAGAGATT+GGG | 0.524842 | 1.3:+8154968 | MS.gene051482:CDS |
ATAGTATATGGGAGAACTGC+CGG | 0.528774 | 1.3:-8153888 | None:intergenic |
GGATGCCTCAGAACTGCTGA+TGG | 0.536396 | 1.3:+8153817 | MS.gene051482:CDS |
GTAACCGTCGTGCTGAGGAA+TGG | 0.536553 | 1.3:+8155715 | MS.gene051482:CDS |
ATTAGGAGGATATTTCCCTT+GGG | 0.539334 | 1.3:-8153716 | None:intergenic |
TATTGCTGATGCTTTGCAAT+GGG | 0.540134 | 1.3:+8155114 | MS.gene051482:CDS |
GGGCATAAAGTCATGATCGC+CGG | 0.545017 | 1.3:+8153788 | MS.gene051482:CDS |
AGATTAGCTGACAGCCACCT+TGG | 0.547787 | 1.3:+8155205 | MS.gene051482:CDS |
AGACATTAAAGAACTTCCTC+CGG | 0.549304 | 1.3:-8155599 | None:intergenic |
GGAGGAAATCGATTAGAGCC+AGG | 0.557630 | 1.3:+8155316 | MS.gene051482:CDS |
AGTTCATAGCTTCTTAGCTG+TGG | 0.560617 | 1.3:-8153098 | None:intergenic |
GGAAATATCCTCCTAATCGC+GGG | 0.561694 | 1.3:+8153722 | MS.gene051482:CDS |
AACTCAATGGTGGTTTAGAG+TGG | 0.565618 | 1.3:+8155688 | MS.gene051482:CDS |
GTTTAGGCTTCAGCATGACA+TGG | 0.572400 | 1.3:-8155668 | None:intergenic |
AGTCATGATCGCCGGGAAGT+GGG | 0.573165 | 1.3:+8153796 | MS.gene051482:CDS |
TTGAAGTTTATGGAAGAAGG+TGG | 0.579140 | 1.3:+8153767 | MS.gene051482:CDS |
TTGATTGATGCGCCTTCCGG+CGG | 0.580215 | 1.3:+8153257 | MS.gene051482:CDS |
TTTGGTGAAAGGTTTCTGAT+CGG | 0.594767 | 1.3:+8155627 | MS.gene051482:CDS |
ACTCAATGGTAACTTTCTTG+TGG | 0.596798 | 1.3:-8155144 | None:intergenic |
ATGCTGAAGCCTAAACTCAA+TGG | 0.597722 | 1.3:+8155675 | MS.gene051482:CDS |
TAGGGTTTGAACAAATTCCA+AGG | 0.603209 | 1.3:-8155222 | None:intergenic |
GGGAAATATCCTCCTAATCG+CGG | 0.607421 | 1.3:+8153721 | MS.gene051482:CDS |
CAATACTAACCTCCGCCGGA+AGG | 0.607674 | 1.3:-8153269 | None:intergenic |
TCATAGCTTCTTAGCTGTGG+AGG | 0.613657 | 1.3:-8153095 | None:intergenic |
TCCCATATACTATCGAAACC+TGG | 0.614304 | 1.3:+8153898 | MS.gene051482:CDS |
GATGGGTAACCGTCGTGCTG+AGG | 0.615512 | 1.3:+8155710 | MS.gene051482:CDS |
TGGAACTCGAGTACACTCAA+TGG | 0.616193 | 1.3:-8155158 | None:intergenic |
TGAAGTTTATGGAAGAAGGT+GGG | 0.621230 | 1.3:+8153768 | MS.gene051482:CDS |
TGGAAACGTTAAGAAGATAG+GGG | 0.627742 | 1.3:+8153196 | MS.gene051482:CDS |
CTGAAGCCTAAACTCAATGG+TGG | 0.628478 | 1.3:+8155678 | MS.gene051482:CDS |
TGTACAAACTAATATTGCCG+TGG | 0.637325 | 1.3:-8155183 | None:intergenic |
CTGGTCGCGTGAAAATCCCA+AGG | 0.638364 | 1.3:+8153700 | MS.gene051482:CDS |
GGGCTCCAAATTTCAAAATG+CGG | 0.638600 | 1.3:+8155736 | MS.gene051482:CDS |
ACAATCATAATGGTGTCCAC+CGG | 0.640527 | 1.3:+8153041 | None:intergenic |
GTATTCCATCAGCAGTTCTG+AGG | 0.642202 | 1.3:-8153822 | None:intergenic |
GTATTGCTGATGCTTTGCAA+TGG | 0.642280 | 1.3:+8155113 | MS.gene051482:CDS |
ATCAGTGCTTCTCTTCGACT+AGG | 0.644770 | 1.3:+8153134 | MS.gene051482:CDS |
TGGAATACGGACAAATATCG+TGG | 0.644990 | 1.3:+8153837 | MS.gene051482:CDS |
AATGGTGGTTTAGAGTGGAT+GGG | 0.650032 | 1.3:+8155693 | MS.gene051482:CDS |
AGATAGGGGATGATGTTCGA+AGG | 0.651387 | 1.3:+8153210 | MS.gene051482:CDS |
CAAACAATACTAACCTCCGC+CGG | 0.657717 | 1.3:-8153273 | None:intergenic |
ACAGGATGAGTCAAACCCAA+AGG | 0.659275 | 1.3:+8154958 | MS.gene051482:intron |
TGTACTCGAGTTCCAAGCCA+CGG | 0.661299 | 1.3:+8155166 | MS.gene051482:CDS |
ATATTGATTATATAGAAGTG+TGG | 0.680795 | 1.3:+8155257 | MS.gene051482:CDS |
GAGCCCATTCCTCAGCACGA+CGG | 0.681884 | 1.3:-8155719 | None:intergenic |
AGTGCTTCTCTTCGACTAGG+CGG | 0.682637 | 1.3:+8153137 | MS.gene051482:CDS |
GGCGGTATAGGAGTAGAAGG+TGG | 0.691425 | 1.3:+8153155 | MS.gene051482:CDS |
TGGTCGCGTGAAAATCCCAA+GGG | 0.691802 | 1.3:+8153701 | MS.gene051482:CDS |
CTCCACATCCCAGAATACGC+CGG | 0.692002 | 1.3:-8153060 | None:intergenic |
CACATCCCAGAATACGCCGG+TGG | 0.692904 | 1.3:-8153057 | None:intergenic |
GGTTTGAACAAATTCCAAGG+TGG | 0.708113 | 1.3:-8155219 | None:intergenic |
AGTTTGCTGAAATTCTCCGG+AGG | 0.726467 | 1.3:+8155583 | MS.gene051482:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATTGTAATCAAATGTT+AGG | + | chr1.3:8154438-8154457 | MS.gene051482:intron | 15.0% |
!!! | AAAAGTGTTCTTATTTATAT+TGG | - | chr1.3:8154702-8154721 | None:intergenic | 15.0% |
!!! | AAAGAAAACACTTTAAAAAT+GGG | - | chr1.3:8153368-8153387 | None:intergenic | 15.0% |
!!! | AAAGTGTTCTTATTTATATT+GGG | - | chr1.3:8154701-8154720 | None:intergenic | 15.0% |
!! | AAATGCTTATCAGAATATAA+AGG | - | chr1.3:8154853-8154872 | None:intergenic | 20.0% |
!! | AATGCTTATCAGAATATAAA+GGG | - | chr1.3:8154852-8154871 | None:intergenic | 20.0% |
!! | AATGTTATACTTCTATTGTT+AGG | - | chr1.3:8154243-8154262 | None:intergenic | 20.0% |
!! | AATTATAATTAGACTTTGGA+GGG | + | chr1.3:8154099-8154118 | MS.gene051482:intron | 20.0% |
!! | AATTCGAATAACAACATTTA+TGG | - | chr1.3:8154996-8155015 | None:intergenic | 20.0% |
!! | ACAGAATTATAATTAGACTT+TGG | + | chr1.3:8154095-8154114 | MS.gene051482:intron | 20.0% |
!! | ATGAAAATAAAAAACGTACA+TGG | - | chr1.3:8155347-8155366 | None:intergenic | 20.0% |
!! | ATTCGAATAACAACATTTAT+GGG | - | chr1.3:8154995-8155014 | None:intergenic | 20.0% |
!! | CACTTCTATATAATCAATAT+TGG | - | chr1.3:8155257-8155276 | None:intergenic | 20.0% |
!! | CGGAATATTAGAAAATATAA+AGG | + | chr1.3:8155756-8155775 | MS.gene051482:CDS | 20.0% |
!! | GAATAATTTGATATGATGAT+TGG | + | chr1.3:8155516-8155535 | MS.gene051482:intron | 20.0% |
!! | TCAATAATAAATCATTGAAC+TGG | - | chr1.3:8155396-8155415 | None:intergenic | 20.0% |
!! | TCATAAATTAAAGTTACTCA+AGG | - | chr1.3:8154408-8154427 | None:intergenic | 20.0% |
!! | TGAAATTGAAATTATTGATG+AGG | + | chr1.3:8153497-8153516 | MS.gene051482:intron | 20.0% |
!! | TTACATTATCAAATGTTATC+AGG | + | chr1.3:8154721-8154740 | MS.gene051482:intron | 20.0% |
!! | TTCAATTAAATATTGCAGTT+AGG | + | chr1.3:8154132-8154151 | MS.gene051482:intron | 20.0% |
!!! | AAGTGTTCTTATTTATATTG+GGG | - | chr1.3:8154700-8154719 | None:intergenic | 20.0% |
!!! | AGTTTGGTAATTTTTTAGTT+GGG | + | chr1.3:8154007-8154026 | MS.gene051482:intron | 20.0% |
!!! | ATATTGATTATATAGAAGTG+TGG | + | chr1.3:8155257-8155276 | MS.gene051482:CDS | 20.0% |
!!! | ATGTTTTCATTTCCAAAAAT+AGG | - | chr1.3:8153972-8153991 | None:intergenic | 20.0% |
!!! | CAAAATAAGACAAATTTTAG+AGG | - | chr1.3:8155841-8155860 | None:intergenic | 20.0% |
!!! | CAAAGAAAACACTTTAAAAA+TGG | - | chr1.3:8153369-8153388 | None:intergenic | 20.0% |
!!! | CTCTAAAATTTGTCTTATTT+TGG | + | chr1.3:8155839-8155858 | MS.gene051482:intron | 20.0% |
!!! | TAATCAAATGTTAGGTTTTA+GGG | + | chr1.3:8154446-8154465 | MS.gene051482:intron | 20.0% |
!!! | TGATTTAACATTCCTATTTT+TGG | + | chr1.3:8153957-8153976 | MS.gene051482:intron | 20.0% |
!!! | TTGAGTAACTTTAATTTATG+AGG | + | chr1.3:8154407-8154426 | MS.gene051482:intron | 20.0% |
!!! | TTGTTGAATAATTTTACATG+AGG | - | chr1.3:8154326-8154345 | None:intergenic | 20.0% |
! | AGCAATACTTATATTATTCC+TGG | - | chr1.3:8155101-8155120 | None:intergenic | 25.0% |
! | ATAGTATGATCGTGTATAAT+TGG | + | chr1.3:8153334-8153353 | MS.gene051482:intron | 25.0% |
! | CAAATCTAACAATTTCAACA+AGG | + | chr1.3:8154296-8154315 | MS.gene051482:intron | 25.0% |
! | GAATTATAATTAGACTTTGG+AGG | + | chr1.3:8154098-8154117 | MS.gene051482:intron | 25.0% |
! | TGCAATATTTAATTGAAGAG+CGG | - | chr1.3:8154129-8154148 | None:intergenic | 25.0% |
! | TTCAATTTCACAACATGATT+TGG | - | chr1.3:8153487-8153506 | None:intergenic | 25.0% |
! | TTCTTTAATGTCTGTAACTT+TGG | + | chr1.3:8155609-8155628 | MS.gene051482:CDS | 25.0% |
! | TTGGAAGTAAAAACATATAG+AGG | - | chr1.3:8154379-8154398 | None:intergenic | 25.0% |
! | TTGTAGGTGTAAAAAGAAAT+GGG | + | chr1.3:8153645-8153664 | MS.gene051482:intron | 25.0% |
! | TTTGTAGGTGTAAAAAGAAA+TGG | + | chr1.3:8153644-8153663 | MS.gene051482:intron | 25.0% |
!! | AATTTTGCAAATTTTACAGC+CGG | + | chr1.3:8155012-8155031 | MS.gene051482:CDS | 25.0% |
!! | ACAGCGTTCATAAATATTTT+TGG | + | chr1.3:8155780-8155799 | MS.gene051482:intron | 25.0% |
!! | AGATTGAACATTTTCTGTTT+AGG | + | chr1.3:8155556-8155575 | MS.gene051482:intron | 25.0% |
!! | CAATGTCTAAAATTGCATAT+GGG | - | chr1.3:8154918-8154937 | None:intergenic | 25.0% |
!! | GTAATCAAATGTTAGGTTTT+AGG | + | chr1.3:8154445-8154464 | MS.gene051482:intron | 25.0% |
!! | TCAATGTCTAAAATTGCATA+TGG | - | chr1.3:8154919-8154938 | None:intergenic | 25.0% |
!!! | AATCAAATGTTAGGTTTTAG+GGG | + | chr1.3:8154447-8154466 | MS.gene051482:intron | 25.0% |
!!! | ACTTTTTTGCTCAACAATAT+TGG | + | chr1.3:8155292-8155311 | MS.gene051482:CDS | 25.0% |
!!! | ATATTCCGCATTTTGAAATT+TGG | - | chr1.3:8155744-8155763 | None:intergenic | 25.0% |
!!! | GAGTTTGGTAATTTTTTAGT+TGG | + | chr1.3:8154006-8154025 | MS.gene051482:intron | 25.0% |
AGCAAAAAAGTTTGCAATAG+TGG | - | chr1.3:8155283-8155302 | None:intergenic | 30.0% | |
AGTTTCAGAATGACATCATA+TGG | + | chr1.3:8153541-8153560 | MS.gene051482:intron | 30.0% | |
ATACACGATCATACTATTCT+GGG | - | chr1.3:8153331-8153350 | None:intergenic | 30.0% | |
CAATCATCAATTACTCAATC+AGG | - | chr1.3:8155497-8155516 | None:intergenic | 30.0% | |
GTTTCAGAATGACATCATAT+GGG | + | chr1.3:8153542-8153561 | MS.gene051482:intron | 30.0% | |
TATACACGATCATACTATTC+TGG | - | chr1.3:8153332-8153351 | None:intergenic | 30.0% | |
TCAAATCGATATAACATGAC+CGG | - | chr1.3:8154506-8154525 | None:intergenic | 30.0% | |
TGAATGAAATGAAACTAACC+AGG | - | chr1.3:8153919-8153938 | None:intergenic | 30.0% | |
TGTTGAAACCTTGAAGTTTA+TGG | + | chr1.3:8153757-8153776 | MS.gene051482:CDS | 30.0% | |
TTGGAAACGTTAAGAAGATA+GGG | + | chr1.3:8153195-8153214 | MS.gene051482:CDS | 30.0% | |
TTTGGAAACGTTAAGAAGAT+AGG | + | chr1.3:8153194-8153213 | MS.gene051482:CDS | 30.0% | |
! | TGCTAACGTTTTTCATTTAC+AGG | + | chr1.3:8154940-8154959 | MS.gene051482:intron | 30.0% |
! | TGTAAAGCGTTTAAACTTAC+AGG | + | chr1.3:8154821-8154840 | MS.gene051482:CDS | 30.0% |
! | TTTAGGGGTTTTACTATAGT+TGG | + | chr1.3:8154462-8154481 | MS.gene051482:intron | 30.0% |
! | TTTTTGCTCAACAATATTGG+TGG | + | chr1.3:8155295-8155314 | MS.gene051482:CDS | 30.0% |
!! | GACGATTATCATGTTTTTGT+AGG | + | chr1.3:8153629-8153648 | MS.gene051482:intron | 30.0% |
!! | GTGATTTTATTTCTCCTTAC+TGG | + | chr1.3:8153601-8153620 | MS.gene051482:intron | 30.0% |
!!! | TCTTTGATGTTTTCAAGTGT+AGG | - | chr1.3:8155049-8155068 | None:intergenic | 30.0% |
!!! | TTTTGGTTGTTTCTTTACAG+AGG | + | chr1.3:8155856-8155875 | MS.gene051482:intron | 30.0% |
AAACTTACTGTAGGATGGTA+TGG | + | chr1.3:8154157-8154176 | MS.gene051482:intron | 35.0% | |
AACCAGGTTTCGATAGTATA+TGG | - | chr1.3:8153903-8153922 | None:intergenic | 35.0% | |
AAGTTACTCAAGGACTATGT+TGG | - | chr1.3:8154398-8154417 | None:intergenic | 35.0% | |
ACCAGGTTTCGATAGTATAT+GGG | - | chr1.3:8153902-8153921 | None:intergenic | 35.0% | |
ACCTTCTTCCATAAACTTCA+AGG | - | chr1.3:8153768-8153787 | None:intergenic | 35.0% | |
ACCTTGAAGTTTATGGAAGA+AGG | + | chr1.3:8153764-8153783 | MS.gene051482:CDS | 35.0% | |
ACTCAATGGTAACTTTCTTG+TGG | - | chr1.3:8155147-8155166 | None:intergenic | 35.0% | |
AGACATTAAAGAACTTCCTC+CGG | - | chr1.3:8155602-8155621 | None:intergenic | 35.0% | |
AGTTAGGAGAAACTTACTGT+AGG | + | chr1.3:8154148-8154167 | MS.gene051482:intron | 35.0% | |
ATGTCTGTAACTTTGGTGAA+AGG | + | chr1.3:8155616-8155635 | MS.gene051482:CDS | 35.0% | |
ATTAGGAGGATATTTCCCTT+GGG | - | chr1.3:8153719-8153738 | None:intergenic | 35.0% | |
ATTTGTTCAAACCCTAAGGT+TGG | + | chr1.3:8155229-8155248 | MS.gene051482:CDS | 35.0% | |
CAAACTTAGTACTGTCATCA+AGG | - | chr1.3:8154673-8154692 | None:intergenic | 35.0% | |
CTATTAGAGTTATCACAGCT+GGG | + | chr1.3:8154051-8154070 | MS.gene051482:intron | 35.0% | |
GGAAATGAAAACATTGAGAG+AGG | + | chr1.3:8153978-8153997 | MS.gene051482:intron | 35.0% | |
GGACTAACTAATTCTGTTAG+TGG | + | chr1.3:8154072-8154091 | MS.gene051482:intron | 35.0% | |
GTAGCTCAAGAATCAAGATT+TGG | - | chr1.3:8154580-8154599 | None:intergenic | 35.0% | |
TAGGGTTTGAACAAATTCCA+AGG | - | chr1.3:8155225-8155244 | None:intergenic | 35.0% | |
TATTGCTGATGCTTTGCAAT+GGG | + | chr1.3:8155114-8155133 | MS.gene051482:CDS | 35.0% | |
TCTAAACCACCATTGAGTTT+AGG | - | chr1.3:8155687-8155706 | None:intergenic | 35.0% | |
TCTATTAGAGTTATCACAGC+TGG | + | chr1.3:8154050-8154069 | MS.gene051482:intron | 35.0% | |
TGAAGTTTATGGAAGAAGGT+GGG | + | chr1.3:8153768-8153787 | MS.gene051482:CDS | 35.0% | |
TGGAAACGTTAAGAAGATAG+GGG | + | chr1.3:8153196-8153215 | MS.gene051482:CDS | 35.0% | |
TGTACAAACTAATATTGCCG+TGG | - | chr1.3:8155186-8155205 | None:intergenic | 35.0% | |
TTATTAGCAACATGCATTCC+TGG | + | chr1.3:8153681-8153700 | MS.gene051482:CDS | 35.0% | |
TTGAAGTTTATGGAAGAAGG+TGG | + | chr1.3:8153767-8153786 | MS.gene051482:CDS | 35.0% | |
TTGTTACAGACTTACAGTCA+TGG | - | chr1.3:8154279-8154298 | None:intergenic | 35.0% | |
TTTACAGAGGAAGACATTGT+AGG | + | chr1.3:8155869-8155888 | MS.gene051482:intron | 35.0% | |
TTTGGTGAAAGGTTTCTGAT+CGG | + | chr1.3:8155627-8155646 | MS.gene051482:CDS | 35.0% | |
TTTGTTCAAACCCTAAGGTT+GGG | + | chr1.3:8155230-8155249 | MS.gene051482:CDS | 35.0% | |
! | AAAACGTACATGGATTTTCC+TGG | - | chr1.3:8155337-8155356 | None:intergenic | 35.0% |
! | ACACTTTAAAAATGGGTTCC+AGG | - | chr1.3:8153361-8153380 | None:intergenic | 35.0% |
! | ATTGAAGGCATACACTGTAA+GGG | - | chr1.3:8154894-8154913 | None:intergenic | 35.0% |
! | CTCAAGAATCAAGATTTGGT+AGG | - | chr1.3:8154576-8154595 | None:intergenic | 35.0% |
! | TGGAATTTGTTCAAACCCTA+AGG | + | chr1.3:8155225-8155244 | MS.gene051482:CDS | 35.0% |
!! | AAATTGCATATGGGCATTGA+AGG | - | chr1.3:8154909-8154928 | None:intergenic | 35.0% |
!! | ATAAGCATTTGTTGTGCCAA+GGG | + | chr1.3:8154863-8154882 | MS.gene051482:intron | 35.0% |
!! | TTGAGTTTGCTGAAATTCTC+CGG | + | chr1.3:8155580-8155599 | MS.gene051482:CDS | 35.0% |
AAACTAATATTGCCGTGGCT+TGG | - | chr1.3:8155181-8155200 | None:intergenic | 40.0% | |
AACTCAATGGTGGTTTAGAG+TGG | + | chr1.3:8155688-8155707 | MS.gene051482:CDS | 40.0% | |
AGGAGAAACTTACTGTAGGA+TGG | + | chr1.3:8154152-8154171 | MS.gene051482:intron | 40.0% | |
AGTGTAGGAAATACATGCTC+CGG | - | chr1.3:8155034-8155053 | None:intergenic | 40.0% | |
AGTTCATAGCTTCTTAGCTG+TGG | - | chr1.3:8153101-8153120 | None:intergenic | 40.0% | |
ATAATCGTCAGTAGCCAGTA+AGG | - | chr1.3:8153618-8153637 | None:intergenic | 40.0% | |
ATAGTATATGGGAGAACTGC+CGG | - | chr1.3:8153891-8153910 | None:intergenic | 40.0% | |
ATGCTGAAGCCTAAACTCAA+TGG | + | chr1.3:8155675-8155694 | MS.gene051482:CDS | 40.0% | |
CAATATTGGTCCCAACCTTA+GGG | - | chr1.3:8155243-8155262 | None:intergenic | 40.0% | |
GATTAGGAGGATATTTCCCT+TGG | - | chr1.3:8153720-8153739 | None:intergenic | 40.0% | |
GGGCTCCAAATTTCAAAATG+CGG | + | chr1.3:8155736-8155755 | MS.gene051482:CDS | 40.0% | |
GGTTTGAACAAATTCCAAGG+TGG | - | chr1.3:8155222-8155241 | None:intergenic | 40.0% | |
GTATTGCTGATGCTTTGCAA+TGG | + | chr1.3:8155113-8155132 | MS.gene051482:CDS | 40.0% | |
GTTTCCTTCTTCAAGAGAGA+AGG | - | chr1.3:8154204-8154223 | None:intergenic | 40.0% | |
TCAAACCCAAAGGAGAGATT+GGG | + | chr1.3:8154968-8154987 | MS.gene051482:CDS | 40.0% | |
TCAATATTGGTCCCAACCTT+AGG | - | chr1.3:8155244-8155263 | None:intergenic | 40.0% | |
TCAGAACTGCTGATGGAATA+CGG | + | chr1.3:8153824-8153843 | MS.gene051482:CDS | 40.0% | |
TCCCATATACTATCGAAACC+TGG | + | chr1.3:8153898-8153917 | MS.gene051482:CDS | 40.0% | |
TGATCGTGTATAATTGGTCC+TGG | + | chr1.3:8153340-8153359 | MS.gene051482:intron | 40.0% | |
TGGAATACGGACAAATATCG+TGG | + | chr1.3:8153837-8153856 | MS.gene051482:CDS | 40.0% | |
TTGAGAGAGGTAGTAGAGTT+TGG | + | chr1.3:8153991-8154010 | MS.gene051482:intron | 40.0% | |
TTGCCGCAAAATCATAGAGA+CGG | - | chr1.3:8154542-8154561 | None:intergenic | 40.0% | |
TTGCTCAACAATATTGGTGG+AGG | + | chr1.3:8155298-8155317 | MS.gene051482:CDS | 40.0% | |
! | AATGGTGGTTTAGAGTGGAT+GGG | + | chr1.3:8155693-8155712 | MS.gene051482:CDS | 40.0% |
! | CAACCGTCTCTATGATTTTG+CGG | + | chr1.3:8154536-8154555 | MS.gene051482:intron | 40.0% |
! | CATTGAAGGCATACACTGTA+AGG | - | chr1.3:8154895-8154914 | None:intergenic | 40.0% |
! | CTTGTACTCGTACTGGTAAA+AGG | - | chr1.3:8154783-8154802 | None:intergenic | 40.0% |
! | CTTTTACCAGTACGAGTACA+AGG | + | chr1.3:8154781-8154800 | MS.gene051482:CDS | 40.0% |
! | GAATCAAGATTTGGTAGGAG+AGG | - | chr1.3:8154571-8154590 | None:intergenic | 40.0% |
! | GACTCTAAAAGGACTACGTT+AGG | - | chr1.3:8153869-8153888 | None:intergenic | 40.0% |
!! | GATAAGCATTTGTTGTGCCA+AGG | + | chr1.3:8154862-8154881 | MS.gene051482:intron | 40.0% |
!!! | AACGTAGTCCTTTTAGAGTC+CGG | + | chr1.3:8153869-8153888 | MS.gene051482:CDS | 40.0% |
AATCACTATCACCCGCGATT+AGG | - | chr1.3:8153736-8153755 | None:intergenic | 45.0% | |
ACAGGATGAGTCAAACCCAA+AGG | + | chr1.3:8154958-8154977 | MS.gene051482:intron | 45.0% | |
ACGGACAAATATCGTGGAAC+TGG | + | chr1.3:8153843-8153862 | MS.gene051482:CDS | 45.0% | |
AGATAGGGGATGATGTTCGA+AGG | + | chr1.3:8153210-8153229 | MS.gene051482:CDS | 45.0% | |
ATCAGTGCTTCTCTTCGACT+AGG | + | chr1.3:8153134-8153153 | MS.gene051482:CDS | 45.0% | |
CAAACAATACTAACCTCCGC+CGG | - | chr1.3:8153276-8153295 | None:intergenic | 45.0% | |
CTGAAGCCTAAACTCAATGG+TGG | + | chr1.3:8155678-8155697 | MS.gene051482:CDS | 45.0% | |
GACCGGAAAAGATACAGCTT+GGG | - | chr1.3:8154489-8154508 | None:intergenic | 45.0% | |
GGAAATATCCTCCTAATCGC+GGG | + | chr1.3:8153722-8153741 | MS.gene051482:CDS | 45.0% | |
GGGAAATATCCTCCTAATCG+CGG | + | chr1.3:8153721-8153740 | MS.gene051482:CDS | 45.0% | |
GGTAGACAAGATCGTGTTTC+AGG | - | chr1.3:8154652-8154671 | None:intergenic | 45.0% | |
GTATTCCATCAGCAGTTCTG+AGG | - | chr1.3:8153825-8153844 | None:intergenic | 45.0% | |
GTCAAACCCAAAGGAGAGAT+TGG | + | chr1.3:8154967-8154986 | MS.gene051482:CDS | 45.0% | |
GTTTAGGCTTCAGCATGACA+TGG | - | chr1.3:8155671-8155690 | None:intergenic | 45.0% | |
TAGGATGGTATGGTATAGCC+TGG | + | chr1.3:8154167-8154186 | MS.gene051482:intron | 45.0% | |
TCATAGCTTCTTAGCTGTGG+AGG | - | chr1.3:8153098-8153117 | None:intergenic | 45.0% | |
TGACCGGAAAAGATACAGCT+TGG | - | chr1.3:8154490-8154509 | None:intergenic | 45.0% | |
TGGAACTCGAGTACACTCAA+TGG | - | chr1.3:8155161-8155180 | None:intergenic | 45.0% | |
TGTGCCTTCTCTCTTGAAGA+AGG | + | chr1.3:8154197-8154216 | MS.gene051482:intron | 45.0% | |
TTCACAATGTAGCAACCCCT+TGG | - | chr1.3:8154612-8154631 | None:intergenic | 45.0% | |
! | CAATGGTGGTTTAGAGTGGA+TGG | + | chr1.3:8155692-8155711 | MS.gene051482:CDS | 45.0% |
! | CGTACTGGTAAAAGGCTACA+AGG | - | chr1.3:8154775-8154794 | None:intergenic | 45.0% |
! | GACCCAAGCTGTATCTTTTC+CGG | + | chr1.3:8154484-8154503 | MS.gene051482:intron | 45.0% |
!! | AGTTTGCTGAAATTCTCCGG+AGG | + | chr1.3:8155583-8155602 | MS.gene051482:CDS | 45.0% |
AGTGCTTCTCTTCGACTAGG+CGG | + | chr1.3:8153137-8153156 | MS.gene051482:CDS | 50.0% | |
ATGGGACCCAATCTCTCCTT+TGG | - | chr1.3:8154977-8154996 | None:intergenic | 50.0% | |
CACTGTAAGGGTTTGACCCT+TGG | - | chr1.3:8154882-8154901 | None:intergenic | 50.0% | |
CGAAGGCAATTCAAAGCTGC+AGG | + | chr1.3:8153227-8153246 | MS.gene051482:CDS | 50.0% | |
CGCAAACCTTGTACTCGTAC+TGG | - | chr1.3:8154790-8154809 | None:intergenic | 50.0% | |
CTAGGCGGTATAGGAGTAGA+AGG | + | chr1.3:8153152-8153171 | MS.gene051482:CDS | 50.0% | |
CTCGTGCTGAACTCAATTCC+AGG | + | chr1.3:8155080-8155099 | MS.gene051482:CDS | 50.0% | |
GACTTGATTGATGCGCCTTC+CGG | + | chr1.3:8153254-8153273 | MS.gene051482:CDS | 50.0% | |
GAGAACTGCCGGACTCTAAA+AGG | - | chr1.3:8153880-8153899 | None:intergenic | 50.0% | |
GATGGTATGGTATAGCCTGG+AGG | + | chr1.3:8154170-8154189 | MS.gene051482:intron | 50.0% | |
GCTTCTTAGCTGTGGAGGAA+TGG | - | chr1.3:8153093-8153112 | None:intergenic | 50.0% | |
GGAGGAAATCGATTAGAGCC+AGG | + | chr1.3:8155316-8155335 | MS.gene051482:CDS | 50.0% | |
GGCATAAAGTCATGATCGCC+GGG | + | chr1.3:8153789-8153808 | MS.gene051482:CDS | 50.0% | |
GGGCATAAAGTCATGATCGC+CGG | + | chr1.3:8153788-8153807 | MS.gene051482:CDS | 50.0% | |
TAACCGTCGTGCTGAGGAAT+GGG | + | chr1.3:8155716-8155735 | MS.gene051482:CDS | 50.0% | |
TCTCTTCGACTAGGCGGTAT+AGG | + | chr1.3:8153143-8153162 | MS.gene051482:CDS | 50.0% | |
TGGGACCCAATCTCTCCTTT+GGG | - | chr1.3:8154976-8154995 | None:intergenic | 50.0% | |
TGGTCGCGTGAAAATCCCAA+GGG | + | chr1.3:8153701-8153720 | MS.gene051482:CDS | 50.0% | |
TGTACTCGAGTTCCAAGCCA+CGG | + | chr1.3:8155166-8155185 | MS.gene051482:CDS | 50.0% | |
! | AGATTAGCTGACAGCCACCT+TGG | + | chr1.3:8155205-8155224 | MS.gene051482:CDS | 50.0% |
!! | GGACTCACTGTGAGAGCATT+TGG | + | chr1.3:8153176-8153195 | MS.gene051482:CDS | 50.0% |
AAGTCATGATCGCCGGGAAG+TGG | + | chr1.3:8153795-8153814 | MS.gene051482:CDS | 55.0% | |
AGTCATGATCGCCGGGAAGT+GGG | + | chr1.3:8153796-8153815 | MS.gene051482:CDS | 55.0% | |
CAATACTAACCTCCGCCGGA+AGG | - | chr1.3:8153272-8153291 | None:intergenic | 55.0% | |
CACTATCACCCGCGATTAGG+AGG | - | chr1.3:8153733-8153752 | None:intergenic | 55.0% | |
CTCCACATCCCAGAATACGC+CGG | - | chr1.3:8153063-8153082 | None:intergenic | 55.0% | |
CTGGTCGCGTGAAAATCCCA+AGG | + | chr1.3:8153700-8153719 | MS.gene051482:CDS | 55.0% | |
GGATGCCTCAGAACTGCTGA+TGG | + | chr1.3:8153817-8153836 | MS.gene051482:CDS | 55.0% | |
GGCGGTATAGGAGTAGAAGG+TGG | + | chr1.3:8153155-8153174 | MS.gene051482:CDS | 55.0% | |
GTAACCGTCGTGCTGAGGAA+TGG | + | chr1.3:8155715-8155734 | MS.gene051482:CDS | 55.0% | |
TTGATTGATGCGCCTTCCGG+CGG | + | chr1.3:8153257-8153276 | MS.gene051482:CDS | 55.0% | |
! | CTTGGGATTTTCACGCGACC+AGG | - | chr1.3:8153702-8153721 | None:intergenic | 55.0% |
!! | TTCTGAGGCATCCCACTTCC+CGG | - | chr1.3:8153810-8153829 | None:intergenic | 55.0% |
AGCTACACGAGCTCGCCAAG+GGG | + | chr1.3:8154594-8154613 | MS.gene051482:intron | 60.0% | |
CACATCCCAGAATACGCCGG+TGG | - | chr1.3:8153060-8153079 | None:intergenic | 60.0% | |
GAGCCCATTCCTCAGCACGA+CGG | - | chr1.3:8155722-8155741 | None:intergenic | 60.0% | |
GAGCTACACGAGCTCGCCAA+GGG | + | chr1.3:8154593-8154612 | MS.gene051482:intron | 60.0% | |
GATGGGTAACCGTCGTGCTG+AGG | + | chr1.3:8155710-8155729 | MS.gene051482:CDS | 60.0% | |
GGTGTCCACCGGCGTATTCT+GGG | + | chr1.3:8153052-8153071 | MS.gene051482:CDS | 60.0% | |
TGAGCTACACGAGCTCGCCA+AGG | + | chr1.3:8154592-8154611 | MS.gene051482:intron | 60.0% | |
TGGTGTCCACCGGCGTATTC+TGG | + | chr1.3:8153051-8153070 | MS.gene051482:CDS | 60.0% | |
! | GAGAAGGCACAGACACCTCC+AGG | - | chr1.3:8154188-8154207 | None:intergenic | 60.0% |
!! | CACCGGCGTATTCTGGGATG+TGG | + | chr1.3:8153058-8153077 | MS.gene051482:CDS | 60.0% |
ATTGATGCGCCTTCCGGCGG+AGG | + | chr1.3:8153260-8153279 | MS.gene051482:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 8153050 | 8155910 | 8153050 | ID=MS.gene051482 |
chr1.3 | mRNA | 8153050 | 8155910 | 8153050 | ID=MS.gene051482.t1;Parent=MS.gene051482 |
chr1.3 | exon | 8153050 | 8153281 | 8153050 | ID=MS.gene051482.t1.exon1;Parent=MS.gene051482.t1 |
chr1.3 | CDS | 8153050 | 8153281 | 8153050 | ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1 |
chr1.3 | exon | 8153651 | 8153919 | 8153651 | ID=MS.gene051482.t1.exon2;Parent=MS.gene051482.t1 |
chr1.3 | CDS | 8153651 | 8153919 | 8153651 | ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1 |
chr1.3 | exon | 8154780 | 8154842 | 8154780 | ID=MS.gene051482.t1.exon3;Parent=MS.gene051482.t1 |
chr1.3 | CDS | 8154780 | 8154842 | 8154780 | ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1 |
chr1.3 | exon | 8154962 | 8155347 | 8154962 | ID=MS.gene051482.t1.exon4;Parent=MS.gene051482.t1 |
chr1.3 | CDS | 8154962 | 8155347 | 8154962 | ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1 |
chr1.3 | exon | 8155578 | 8155777 | 8155578 | ID=MS.gene051482.t1.exon5;Parent=MS.gene051482.t1 |
chr1.3 | CDS | 8155578 | 8155777 | 8155578 | ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1 |
chr1.3 | exon | 8155876 | 8155910 | 8155876 | ID=MS.gene051482.t1.exon6;Parent=MS.gene051482.t1 |
chr1.3 | CDS | 8155876 | 8155910 | 8155876 | ID=cds.MS.gene051482.t1;Parent=MS.gene051482.t1 |
Gene Sequence |
Protein sequence |