Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052433.t1 | RHN52866.1 | 98 | 639 | 13 | 0 | 1 | 639 | 54 | 692 | 0.00E+00 | 1203.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052433.t1 | Q94LW6 | 61.2 | 624 | 233 | 3 | 11 | 632 | 16 | 632 | 3.8e-215 | 749.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052433.t1 | G7KNG9 | 98.0 | 639 | 13 | 0 | 1 | 639 | 1 | 639 | 0.0e+00 | 1203.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052433 | MS.gene49944 | 0.895846 | 6.50E-76 | -1.69E-46 |
| MS.gene052433 | MS.gene61430 | 0.870591 | 1.30E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064542 | MS.gene052433 | PPI |
| MS.gene012490 | MS.gene052433 | PPI |
| MS.gene44056 | MS.gene052433 | PPI |
| MS.gene40741 | MS.gene052433 | PPI |
| MS.gene052433 | MS.gene52620 | PPI |
| MS.gene73119 | MS.gene052433 | PPI |
| MS.gene035805 | MS.gene052433 | PPI |
| MS.gene052433 | MS.gene035629 | PPI |
| MS.gene005189 | MS.gene052433 | PPI |
| MS.gene052433 | MS.gene91547 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052433.t1 | MTR_6g086170 | 97.966 | 639 | 13 | 0 | 1 | 639 | 1 | 639 | 0.0 | 1282 |
| MS.gene052433.t1 | MTR_7g095430 | 52.113 | 639 | 299 | 3 | 3 | 637 | 13 | 648 | 0.0 | 686 |
| MS.gene052433.t1 | MTR_1g071530 | 52.038 | 638 | 299 | 4 | 3 | 636 | 15 | 649 | 0.0 | 679 |
| MS.gene052433.t1 | MTR_7g095430 | 54.713 | 541 | 242 | 2 | 3 | 543 | 13 | 550 | 0.0 | 621 |
| MS.gene052433.t1 | MTR_4g084640 | 48.864 | 616 | 312 | 2 | 21 | 634 | 33 | 647 | 0.0 | 619 |
| MS.gene052433.t1 | MTR_2g102243 | 47.994 | 623 | 318 | 3 | 3 | 620 | 15 | 636 | 0.0 | 612 |
| MS.gene052433.t1 | MTR_4g084620 | 46.215 | 634 | 335 | 4 | 6 | 636 | 16 | 646 | 0.0 | 600 |
| MS.gene052433.t1 | MTR_4g011970 | 47.496 | 619 | 318 | 3 | 6 | 620 | 28 | 643 | 0.0 | 594 |
| MS.gene052433.t1 | MTR_5g061880 | 44.745 | 628 | 341 | 3 | 5 | 627 | 25 | 651 | 0.0 | 582 |
| MS.gene052433.t1 | MTR_3g073780 | 44.320 | 625 | 341 | 4 | 5 | 623 | 28 | 651 | 0.0 | 561 |
| MS.gene052433.t1 | MTR_2g102243 | 47.636 | 571 | 293 | 3 | 3 | 568 | 15 | 584 | 0.0 | 561 |
| MS.gene052433.t1 | MTR_2g008470 | 45.307 | 618 | 331 | 4 | 8 | 620 | 33 | 648 | 0.0 | 550 |
| MS.gene052433.t1 | MTR_2g008470 | 45.307 | 618 | 331 | 4 | 8 | 620 | 52 | 667 | 0.0 | 550 |
| MS.gene052433.t1 | MTR_3g073780 | 46.252 | 547 | 290 | 3 | 5 | 548 | 28 | 573 | 2.11e-178 | 519 |
| MS.gene052433.t1 | MTR_3g073780 | 46.341 | 533 | 282 | 3 | 5 | 534 | 28 | 559 | 2.91e-173 | 505 |
| MS.gene052433.t1 | MTR_5g061860 | 43.067 | 613 | 337 | 5 | 23 | 623 | 34 | 646 | 7.63e-173 | 507 |
| MS.gene052433.t1 | MTR_3g087740 | 42.978 | 591 | 327 | 5 | 42 | 624 | 62 | 650 | 1.98e-168 | 496 |
| MS.gene052433.t1 | MTR_3g073730 | 42.114 | 577 | 320 | 6 | 60 | 623 | 77 | 652 | 3.58e-158 | 470 |
| MS.gene052433.t1 | MTR_5g061860 | 44.338 | 521 | 281 | 4 | 23 | 534 | 34 | 554 | 6.03e-152 | 450 |
| MS.gene052433.t1 | MTR_3g087730 | 35.167 | 600 | 372 | 8 | 42 | 624 | 57 | 656 | 6.59e-130 | 397 |
| MS.gene052433.t1 | MTR_7g022870 | 35.533 | 591 | 367 | 9 | 52 | 636 | 67 | 649 | 1.09e-120 | 375 |
| MS.gene052433.t1 | MTR_7g022870 | 36.542 | 509 | 312 | 8 | 52 | 557 | 67 | 567 | 8.98e-105 | 329 |
| MS.gene052433.t1 | MTR_6g024420 | 31.690 | 142 | 78 | 4 | 201 | 342 | 42 | 164 | 1.43e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052433.t1 | AT5G19600 | 61.022 | 626 | 235 | 3 | 10 | 633 | 15 | 633 | 0.0 | 785 |
| MS.gene052433.t1 | AT3G51895 | 54.574 | 634 | 280 | 4 | 5 | 631 | 58 | 690 | 0.0 | 734 |
| MS.gene052433.t1 | AT3G51895 | 54.574 | 634 | 280 | 4 | 5 | 631 | 13 | 645 | 0.0 | 733 |
| MS.gene052433.t1 | AT4G02700 | 50.627 | 638 | 311 | 2 | 1 | 634 | 1 | 638 | 0.0 | 653 |
| MS.gene052433.t1 | AT3G15990 | 48.631 | 621 | 312 | 3 | 4 | 620 | 23 | 640 | 0.0 | 614 |
| MS.gene052433.t1 | AT1G23090 | 47.903 | 620 | 315 | 4 | 6 | 620 | 2 | 618 | 0.0 | 593 |
| MS.gene052433.t1 | AT4G08620 | 46.569 | 612 | 321 | 3 | 17 | 623 | 30 | 640 | 0.0 | 572 |
| MS.gene052433.t1 | AT1G22150 | 44.640 | 625 | 332 | 4 | 12 | 627 | 33 | 652 | 0.0 | 542 |
| MS.gene052433.t1 | AT1G22150 | 44.640 | 625 | 332 | 4 | 12 | 627 | 33 | 652 | 0.0 | 542 |
| MS.gene052433.t1 | AT1G22150 | 44.640 | 625 | 332 | 4 | 12 | 627 | 33 | 652 | 0.0 | 542 |
| MS.gene052433.t1 | AT1G78000 | 46.090 | 601 | 318 | 3 | 28 | 623 | 46 | 645 | 0.0 | 533 |
| MS.gene052433.t1 | AT1G78000 | 46.090 | 601 | 318 | 3 | 28 | 623 | 46 | 645 | 0.0 | 533 |
| MS.gene052433.t1 | AT1G78000 | 46.090 | 601 | 318 | 3 | 28 | 623 | 46 | 645 | 0.0 | 533 |
| MS.gene052433.t1 | AT1G78000 | 46.181 | 563 | 297 | 3 | 28 | 585 | 46 | 607 | 2.81e-172 | 504 |
| MS.gene052433.t1 | AT1G22150 | 46.765 | 541 | 282 | 3 | 12 | 551 | 33 | 568 | 4.19e-172 | 503 |
| MS.gene052433.t1 | AT5G10180 | 42.978 | 591 | 326 | 5 | 42 | 623 | 84 | 672 | 7.76e-169 | 498 |
| MS.gene052433.t1 | AT1G78000 | 47.969 | 517 | 267 | 2 | 28 | 543 | 46 | 561 | 1.06e-166 | 489 |
| MS.gene052433.t1 | AT1G77990 | 40.981 | 571 | 326 | 4 | 60 | 620 | 94 | 663 | 2.53e-158 | 471 |
| MS.gene052433.t1 | AT1G23090 | 46.042 | 480 | 254 | 2 | 146 | 620 | 7 | 486 | 1.39e-148 | 439 |
| MS.gene052433.t1 | AT1G23090 | 46.042 | 480 | 254 | 2 | 146 | 620 | 7 | 486 | 1.39e-148 | 439 |
| MS.gene052433.t1 | AT1G23090 | 46.042 | 480 | 254 | 2 | 146 | 620 | 7 | 486 | 1.39e-148 | 439 |
| MS.gene052433.t1 | AT1G78000 | 48.132 | 455 | 234 | 2 | 28 | 481 | 46 | 499 | 4.24e-141 | 421 |
| MS.gene052433.t1 | AT1G78000 | 45.647 | 425 | 230 | 1 | 120 | 543 | 2 | 426 | 3.08e-127 | 384 |
| MS.gene052433.t1 | AT5G13550 | 34.304 | 618 | 386 | 11 | 29 | 637 | 47 | 653 | 6.66e-116 | 362 |
| MS.gene052433.t1 | AT3G12520 | 35.385 | 585 | 362 | 10 | 60 | 638 | 52 | 626 | 1.90e-115 | 360 |
| MS.gene052433.t1 | AT3G12520 | 35.385 | 585 | 362 | 10 | 60 | 638 | 68 | 642 | 3.47e-115 | 359 |
| MS.gene052433.t1 | AT3G12520 | 35.060 | 502 | 317 | 7 | 34 | 534 | 42 | 535 | 8.32e-97 | 307 |
Find 118 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACCATCACTGGCTTTA+TGG | 0.091737 | 6.1:-75002888 | MS.gene052433:CDS |
| TCTTCCATAATTTGCCTAAA+AGG | 0.165537 | 6.1:+75004704 | None:intergenic |
| AACTGCTATTGAAGGATTAT+TGG | 0.199180 | 6.1:-74995625 | MS.gene052433:CDS |
| GGAATCATTCTATCTAAATT+TGG | 0.211162 | 6.1:-74995297 | MS.gene052433:CDS |
| CTTGGAAAGTTACCTGATTC+TGG | 0.227842 | 6.1:-74996357 | MS.gene052433:CDS |
| GCCAATATCCATGCTTAAAA+AGG | 0.236226 | 6.1:+74996813 | None:intergenic |
| CCAACTACTACACATGTTAT+TGG | 0.237105 | 6.1:+75001348 | None:intergenic |
| CATTTGTAGGCTTGGGATAT+TGG | 0.255298 | 6.1:-75002927 | MS.gene052433:intron |
| TACAATGTTGGTTCTGTTAC+AGG | 0.256809 | 6.1:+75003659 | None:intergenic |
| AATAATCTCAAAGTATAATT+TGG | 0.268753 | 6.1:+75004617 | None:intergenic |
| ATCATTGTATCTGCCATGTT+AGG | 0.283405 | 6.1:-74996922 | MS.gene052433:CDS |
| TTTGTGACAAAACTGAAATC+TGG | 0.284226 | 6.1:-75004755 | MS.gene052433:CDS |
| TCTACCATCACTGGCTTTAT+GGG | 0.290527 | 6.1:-75002887 | MS.gene052433:CDS |
| ATTGGAAACAAAGAAAATAT+TGG | 0.294585 | 6.1:-74995607 | MS.gene052433:CDS |
| AGGAGGAAGATTGGCAAGTT+TGG | 0.298917 | 6.1:+75004529 | None:intergenic |
| CACAGCTATAACGTTGGTTT+TGG | 0.299109 | 6.1:+75002799 | None:intergenic |
| AAACCCTAGGTTGGAGGTTA+TGG | 0.300449 | 6.1:-74995360 | MS.gene052433:CDS |
| AAATCTCGTAGGTTGATTAA+AGG | 0.311993 | 6.1:-75004674 | MS.gene052433:CDS |
| ATTGGAAATGAAAGCAATTC+AGG | 0.312773 | 6.1:-74995589 | MS.gene052433:intron |
| GTGCAAGAGATTCATCATAA+TGG | 0.322663 | 6.1:-75004803 | MS.gene052433:CDS |
| TGCAAGAGATTCATCATAAT+GGG | 0.323918 | 6.1:-75004802 | MS.gene052433:CDS |
| AATCTCGTAGGTTGATTAAA+GGG | 0.331148 | 6.1:-75004673 | MS.gene052433:CDS |
| GCCAATCTTCCTCCTCTCAT+TGG | 0.336096 | 6.1:-75004521 | MS.gene052433:CDS |
| AGATGGGAAACTACAGTTCT+TGG | 0.350067 | 6.1:-75002045 | MS.gene052433:CDS |
| GTCTTCATTATTGTTTGGCT+TGG | 0.354659 | 6.1:+74995235 | None:intergenic |
| TTTGGCCTTATGAACTTGTT+TGG | 0.358395 | 6.1:-75000872 | MS.gene052433:CDS |
| GTAGAATTTGAAAAGTAAAT+AGG | 0.362141 | 6.1:+74996261 | None:intergenic |
| TATTTGCATGAGTGCATTCT+TGG | 0.363630 | 6.1:-74996842 | MS.gene052433:CDS |
| TTTGGTAACCACTCAAAGAT+TGG | 0.364192 | 6.1:+75004635 | None:intergenic |
| AAAAGTGAACAAATCAGTTC+TGG | 0.368002 | 6.1:-74996100 | MS.gene052433:CDS |
| AACAAAGAGATGATAGCTTT+TGG | 0.372125 | 6.1:-75000890 | MS.gene052433:CDS |
| TCTAATGCTTCAACAATTCC+AGG | 0.372816 | 6.1:-74996309 | MS.gene052433:CDS |
| ATTTGCCTAAAAGGATCATC+AGG | 0.384081 | 6.1:+75004713 | None:intergenic |
| GTTGGACTAGGTTTACTTAG+AGG | 0.389651 | 6.1:-74996414 | MS.gene052433:CDS |
| TAATTAATTACCTTTCTTTG+AGG | 0.391511 | 6.1:+74996235 | None:intergenic |
| ACAGTGTCTTCATTATTGTT+TGG | 0.392452 | 6.1:+74995230 | None:intergenic |
| TTCACAGCCGTCTTGGAAAA+TGG | 0.392750 | 6.1:+74997063 | None:intergenic |
| TGTGGTTCAAGCAGTAATAA+TGG | 0.397620 | 6.1:-74997007 | MS.gene052433:CDS |
| GTCAGATATTGAATTGATAT+AGG | 0.399696 | 6.1:+75001123 | None:intergenic |
| TATTATTATACAGTTGGCCT+TGG | 0.416640 | 6.1:-74995384 | MS.gene052433:intron |
| ATTGACACAACTGCTATTGA+AGG | 0.423273 | 6.1:-74995633 | MS.gene052433:CDS |
| GATACTAACCTCATGTCTAT+TGG | 0.426004 | 6.1:+75002760 | None:intergenic |
| TCATTGTATCTGCCATGTTA+GGG | 0.442300 | 6.1:-74996921 | MS.gene052433:CDS |
| AAGAACCAAACAAGTTCATA+AGG | 0.452584 | 6.1:+75000867 | None:intergenic |
| GCCAATGAGAGGAGGAAGAT+TGG | 0.452640 | 6.1:+75004520 | None:intergenic |
| TCTCTGTATAAACCAGAATC+AGG | 0.455645 | 6.1:+74996345 | None:intergenic |
| TTTGCAATCTAGGTTGGACT+AGG | 0.455947 | 6.1:-74996426 | MS.gene052433:intron |
| TCTCATCCTCCAACAATTCA+AGG | 0.458094 | 6.1:-75002849 | MS.gene052433:CDS |
| TAAAGCCAGTGATGGTAGAA+TGG | 0.458267 | 6.1:+75002891 | None:intergenic |
| TACAGAAAAGCTTCTTCCTA+TGG | 0.460262 | 6.1:+75000937 | None:intergenic |
| TTGTGACAAAACTGAAATCT+GGG | 0.460516 | 6.1:-75004754 | MS.gene052433:CDS |
| ACAAATCAGTTCTGGAGATA+TGG | 0.462184 | 6.1:-74996092 | MS.gene052433:CDS |
| CTTGCAATTTACAAGGCACT+TGG | 0.472344 | 6.1:-75002004 | MS.gene052433:intron |
| ACTTGTATAATTAGAACTCC+TGG | 0.472930 | 6.1:+74996291 | None:intergenic |
| ATTTGCATGAGTGCATTCTT+GGG | 0.476647 | 6.1:-74996841 | MS.gene052433:CDS |
| CATGAGTGCATTCTTGGGTG+TGG | 0.481086 | 6.1:-74996836 | MS.gene052433:CDS |
| AGTGGTGTGTTGCTAAATAA+TGG | 0.482061 | 6.1:+74996961 | None:intergenic |
| TTCACGACAACCTTTATCAC+TGG | 0.484749 | 6.1:-75003623 | MS.gene052433:CDS |
| GGAGTTCTAATTATACAAGT+TGG | 0.491780 | 6.1:-74996288 | MS.gene052433:CDS |
| AAAGCCAGTGATGGTAGAAT+GGG | 0.500955 | 6.1:+75002892 | None:intergenic |
| AGACCACCAGCATGCAAGCT+TGG | 0.506725 | 6.1:-74996375 | MS.gene052433:CDS |
| GTTCTAGGCACATGGCAGTT+GGG | 0.507091 | 6.1:-75003736 | MS.gene052433:CDS |
| CTTGGTAAACCCTAGGTTGG+AGG | 0.508663 | 6.1:-74995366 | MS.gene052433:CDS |
| ACTTGTCAACTTTAAAGAGA+TGG | 0.509613 | 6.1:+74996875 | None:intergenic |
| ATTCTACATACCTCAAAGAA+AGG | 0.514031 | 6.1:-74996245 | MS.gene052433:intron |
| ATCTCTTTGTTCCCATCATG+AGG | 0.518610 | 6.1:+75000902 | None:intergenic |
| AGTTCTAGGCACATGGCAGT+TGG | 0.522267 | 6.1:-75003737 | MS.gene052433:CDS |
| AACTTTCCAAGCTTGCATGC+TGG | 0.527389 | 6.1:+74996369 | None:intergenic |
| AAATTTGGAAGATGCAGTGT+TGG | 0.527724 | 6.1:-74995282 | MS.gene052433:CDS |
| TTATCAACAGTAATGAAAGC+TGG | 0.530131 | 6.1:-75001084 | MS.gene052433:CDS |
| TTTCCAAGCTTGCATGCTGG+TGG | 0.538810 | 6.1:+74996372 | None:intergenic |
| ACTGCTAATACACCTCATGA+TGG | 0.545862 | 6.1:-75000914 | MS.gene052433:CDS |
| CTTGTGAAAGGTACACAACA+TGG | 0.546175 | 6.1:-75001309 | MS.gene052433:CDS |
| TTCTCCATAACCTCCAACCT+AGG | 0.548321 | 6.1:+74995356 | None:intergenic |
| GGCCTTGGTAAACCCTAGGT+TGG | 0.548374 | 6.1:-74995369 | MS.gene052433:CDS |
| ATAACTAATGCCTTGAGGAA+TGG | 0.551773 | 6.1:+75004553 | None:intergenic |
| ATAACATGTGTAGTAGTTGG+TGG | 0.555611 | 6.1:-75001345 | MS.gene052433:CDS |
| CATGTTGTGTACCTTTCACA+AGG | 0.555977 | 6.1:+75001310 | None:intergenic |
| ATCAAGTGAAGATACAATGT+TGG | 0.557565 | 6.1:+75003647 | None:intergenic |
| TCTCCATAACCTCCAACCTA+GGG | 0.557732 | 6.1:+74995357 | None:intergenic |
| CCAATAACATGTGTAGTAGT+TGG | 0.558610 | 6.1:-75001348 | MS.gene052433:CDS |
| CTCTAGCACAGCTATAACGT+TGG | 0.559151 | 6.1:+75002793 | None:intergenic |
| ACCATCACTGGCTTTATGGG+AGG | 0.561154 | 6.1:-75002884 | MS.gene052433:CDS |
| GCTAGTCTTGCCATTCCTCA+AGG | 0.563153 | 6.1:-75004563 | MS.gene052433:CDS |
| ATTGTAATTCACAGCCGTCT+TGG | 0.564494 | 6.1:+74997056 | None:intergenic |
| TGATAAATATCTTCTATCAA+AGG | 0.566348 | 6.1:+75001101 | None:intergenic |
| AGTTGGCCTTGGTAAACCCT+AGG | 0.569670 | 6.1:-74995373 | MS.gene052433:CDS |
| ACATCATGTTACTTAACTAG+TGG | 0.570603 | 6.1:-75000842 | MS.gene052433:intron |
| CTGCTAATACACCTCATGAT+GGG | 0.571207 | 6.1:-75000913 | MS.gene052433:CDS |
| TTGTAAATTGCAAGAAAACA+AGG | 0.572872 | 6.1:+75002013 | None:intergenic |
| CAGTGGAGTATTATCATTAG+CGG | 0.573285 | 6.1:-75001055 | MS.gene052433:intron |
| ACAATGTTGGTTCTGTTACA+GGG | 0.576689 | 6.1:+75003660 | None:intergenic |
| GCAGATACCCAAAAGAGTTG+TGG | 0.585327 | 6.1:+75001378 | None:intergenic |
| AAATGCCCTTGAATTGTTGG+AGG | 0.588732 | 6.1:+75002843 | None:intergenic |
| CAACGTTATAGCTGTGCTAG+AGG | 0.589719 | 6.1:-75002792 | MS.gene052433:CDS |
| AGGAATGGCAAGACTAGCAA+TGG | 0.591507 | 6.1:+75004568 | None:intergenic |
| ATCTCGTAGGTTGATTAAAG+GGG | 0.603398 | 6.1:-75004672 | MS.gene052433:CDS |
| CCCTCCCATAAAGCCAGTGA+TGG | 0.605304 | 6.1:+75002883 | None:intergenic |
| CCATCACTGGCTTTATGGGA+GGG | 0.606512 | 6.1:-75002883 | MS.gene052433:CDS |
| ATATAGGAAGGAATAGCCAT+AGG | 0.612781 | 6.1:-75000953 | MS.gene052433:intron |
| ACGGCTGTGAATTACAATGC+AGG | 0.613947 | 6.1:-74997051 | MS.gene052433:CDS |
| AACGTTATAGCTGTGCTAGA+GGG | 0.614539 | 6.1:-75002791 | MS.gene052433:CDS |
| CTCATCCTCCAACAATTCAA+GGG | 0.615128 | 6.1:-75002848 | MS.gene052433:CDS |
| ATGAAAGCTGGACTAATCAG+TGG | 0.624504 | 6.1:-75001072 | MS.gene052433:CDS |
| GACTTACAAAGGCCAATGAG+AGG | 0.626933 | 6.1:+75004509 | None:intergenic |
| ATAATTTATCAACCCTAACA+TGG | 0.629736 | 6.1:+74996909 | None:intergenic |
| CATCTTTACCAATAGACATG+AGG | 0.630254 | 6.1:-75002768 | MS.gene052433:intron |
| GAGTACTCACAGAGAGCATG+AGG | 0.634898 | 6.1:+74996791 | None:intergenic |
| AAAACAGCATACACTAGTGG+TGG | 0.646156 | 6.1:+75003764 | None:intergenic |
| TTGGCATAACTAATGCCTTG+AGG | 0.647323 | 6.1:+75004548 | None:intergenic |
| GTGAACTTATCAACCCAAAG+AGG | 0.656250 | 6.1:-75004779 | MS.gene052433:CDS |
| TTTGCCTAAAAGGATCATCA+GGG | 0.658092 | 6.1:+75004714 | None:intergenic |
| TTACAAAGGCCAATGAGAGG+AGG | 0.669733 | 6.1:+75004512 | None:intergenic |
| ATAGCTGATAGAGCAACAAG+TGG | 0.676923 | 6.1:+74996943 | None:intergenic |
| TAGGTGGGACATCTAGACAA+AGG | 0.681215 | 6.1:-75001153 | MS.gene052433:CDS |
| GCAAGAGATTCATCATAATG+GGG | 0.683072 | 6.1:-75004801 | MS.gene052433:CDS |
| TAAATCTGCAATGACAAATG+TGG | 0.698801 | 6.1:-74997025 | MS.gene052433:CDS |
| CTCCAACCTAGGGTTTACCA+AGG | 0.721018 | 6.1:+74995367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 74995226 | 75004834 | 74995226 | ID=MS.gene052433 |
| chr6.1 | mRNA | 74995226 | 75004834 | 74995226 | ID=MS.gene052433.t1;Parent=MS.gene052433 |
| chr6.1 | exon | 75004516 | 75004834 | 75004516 | ID=MS.gene052433.t1.exon1;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 75004516 | 75004834 | 75004516 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 75003593 | 75003800 | 75003593 | ID=MS.gene052433.t1.exon2;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 75003593 | 75003800 | 75003593 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 75002769 | 75002940 | 75002769 | ID=MS.gene052433.t1.exon3;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 75002769 | 75002940 | 75002769 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 75002005 | 75002070 | 75002005 | ID=MS.gene052433.t1.exon4;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 75002005 | 75002070 | 75002005 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 75001299 | 75001412 | 75001299 | ID=MS.gene052433.t1.exon5;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 75001299 | 75001412 | 75001299 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 75001056 | 75001172 | 75001056 | ID=MS.gene052433.t1.exon6;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 75001056 | 75001172 | 75001056 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 75000843 | 75000969 | 75000843 | ID=MS.gene052433.t1.exon7;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 75000843 | 75000969 | 75000843 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 74996801 | 74997087 | 74996801 | ID=MS.gene052433.t1.exon8;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 74996801 | 74997087 | 74996801 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 74996246 | 74996436 | 74996246 | ID=MS.gene052433.t1.exon9;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 74996246 | 74996436 | 74996246 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 74996065 | 74996138 | 74996065 | ID=MS.gene052433.t1.exon10;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 74996065 | 74996138 | 74996065 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 74995590 | 74995666 | 74995590 | ID=MS.gene052433.t1.exon11;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 74995590 | 74995666 | 74995590 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| chr6.1 | exon | 74995226 | 74995393 | 74995226 | ID=MS.gene052433.t1.exon12;Parent=MS.gene052433.t1 |
| chr6.1 | CDS | 74995226 | 74995393 | 74995226 | ID=cds.MS.gene052433.t1;Parent=MS.gene052433.t1 |
| Gene Sequence |
| Protein sequence |