AlfalfaGEDB | MS.gene052467

M. sativa cultivar XinJiangDaYe / MS.gene052467

KEGG: K18368
GO: GO:0003674 GO:0003824 GO:0005488 GO:0019842 GO:0030976 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0048037 GO:0050662 GO:0097159 GO:1901363 GO:1901681
PFAM: PF02775.24 PF12146.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052467.t1	AES62911.2	70.6	153	32	3	26	171	21	167	1.10E-52	217.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052467.t1	P51850	73.8	126	15	2	177	284	405	530	1.1e-43	178.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052467.t1	G7IDA5	70.6	153	32	3	26	171	21	167	8.0e-53	217.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052447	MS.gene052467	0.806178	9.33E-50	-1.69E-46
MS.gene052467	MS.gene065039	0.80638	8.46E-50	-1.69E-46
MS.gene052467	MS.gene37027	0.809439	1.89E-50	-1.69E-46
MS.gene052467	MS.gene49120	0.805989	1.02E-49	-1.69E-46
MS.gene052467	MS.gene57498	0.803013	4.27E-49	-1.69E-46
MS.gene052467	MS.gene66428	0.805915	1.06E-49	-1.69E-46
MS.gene052467	MS.gene76755	0.812626	3.86E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052467.t1	MTR_1g110670	70.588	153	32	3	26	171	21	167	1.08e-67	216
MS.gene052467.t1	MTR_5g056550	71.429	119	29	1	53	171	88	201	3.50e-56	184
MS.gene052467.t1	MTR_5g056550	71.429	119	29	1	53	171	88	201	3.90e-56	183
MS.gene052467.t1	MTR_5g056550	71.429	119	29	1	53	171	88	201	2.64e-55	184
MS.gene052467.t1	MTR_5g056550	71.429	119	29	1	53	171	88	201	3.94e-55	184
MS.gene052467.t1	MTR_2g015560	75.397	126	13	1	177	284	394	519	4.79e-52	181
MS.gene052467.t1	MTR_4g017200	65.873	126	25	1	177	284	419	544	2.12e-45	163
MS.gene052467.t1	MTR_5g046610	65.873	126	25	1	177	284	419	544	2.26e-45	163
MS.gene052467.t1	MTR_7g069500	64.286	126	27	1	177	284	387	512	1.09e-44	160
MS.gene052467.t1	MTR_7g069540	63.492	126	28	1	177	284	417	542	1.97e-44	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052467.t1	AT5G54960	64.286	126	27	1	177	284	419	544	1.02e-44	161
MS.gene052467.t1	AT1G77420	52.703	148	59	2	23	170	51	187	9.53e-44	154
MS.gene052467.t1	AT5G01320	63.492	126	28	1	177	284	415	540	5.76e-42	154
MS.gene052467.t1	AT5G01330	62.698	126	29	1	177	284	404	529	8.51e-42	153
MS.gene052467.t1	AT5G16120	59.524	126	42	3	49	171	30	149	1.43e-41	148
MS.gene052467.t1	AT5G16120	59.524	126	42	3	49	171	30	149	1.43e-41	148
MS.gene052467.t1	AT5G16120	59.524	126	42	3	49	171	48	167	1.92e-41	148
MS.gene052467.t1	AT5G16120	59.524	126	42	3	49	171	62	181	2.43e-41	148
MS.gene052467.t1	AT4G33070	62.698	126	29	1	177	284	419	544	2.45e-41	152
MS.gene052467.t1	AT2G39410	40.860	93	54	1	77	169	11	102	1.13e-18	80.9

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Find 72 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGATGCCAGAACA+TGG	0.597114	6.1:+75832656	MS.gene052467:CDS
AAAATACCTTCATGCAGTGG+CGG	0.633305	6.1:-75831274	None:intergenic
AAATCTTTGATATAGCATCA+TGG	0.559093	6.1:-75831678	None:intergenic
AACCCCTTACCCCAGGGTCC+TGG	0.434155	6.1:+75831249	MS.gene052467:CDS
AAGCTCGAACCCCTTACCCC+AGG	0.574558	6.1:+75831242	MS.gene052467:CDS
AAGTGTGTGATTGCATGCAT+TGG	0.648664	6.1:+75834827	MS.gene052467:CDS
ACAGTTAAACCATGAATATC+CGG	0.481487	6.1:-75834655	None:intergenic
ACTACAAGCTTATGCATGCG+AGG	0.666131	6.1:+75831513	MS.gene052467:CDS
ACTGCTGTAATAGCTGAAAC+CGG	0.519597	6.1:+75834636	MS.gene052467:CDS
ACTTGCACTTTCTTCTTTGA+AGG	0.335129	6.1:+75832725	MS.gene052467:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAATACCTTCATGCAG+TGG	-	chr6.1:75831280-75831299	None:intergenic	30.0%
AAAATGAAGTAACATTCGCT+TGG	+	chr6.1:75831896-75831915	MS.gene052467:intron	30.0%
AACTGTGTCACATGATTTAA+CGG	-	chr6.1:75834067-75834086	None:intergenic	30.0%
AAGGAAAATGGAGAAAATGA+AGG	+	chr6.1:75833047-75833066	MS.gene052467:intron	30.0%
AATCCAAACATACCCTAAAT+AGG	+	chr6.1:75832544-75832563	MS.gene052467:intron	30.0%
ACAGTTAAACCATGAATATC+CGG	-	chr6.1:75834658-75834677	None:intergenic	30.0%
ACCATGTGTAAAAAACTACA+AGG	+	chr6.1:75833028-75833047	MS.gene052467:intron	30.0%
ACGTTAGAGATGTAATCATA+GGG	-	chr6.1:75833831-75833850	None:intergenic	30.0%
AGAAATGAACCAAAAGACAA+AGG	-	chr6.1:75831569-75831588	None:intergenic	30.0%
AGAGTTATCAAATTTGAGGA+TGG	+	chr6.1:75832759-75832778	MS.gene052467:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	75831232	75835415	75831232	ID=MS.gene052467
chr6.1	mRNA	75831232	75835415	75831232	ID=MS.gene052467.t1;Parent=MS.gene052467
chr6.1	exon	75831232	75831289	75831232	ID=MS.gene052467.t1.exon1;Parent=MS.gene052467.t1
chr6.1	CDS	75831232	75831289	75831232	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75831383	75831389	75831383	ID=MS.gene052467.t1.exon2;Parent=MS.gene052467.t1
chr6.1	CDS	75831383	75831389	75831383	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75831496	75831562	75831496	ID=MS.gene052467.t1.exon3;Parent=MS.gene052467.t1
chr6.1	CDS	75831496	75831562	75831496	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75831664	75831735	75831664	ID=MS.gene052467.t1.exon4;Parent=MS.gene052467.t1
chr6.1	CDS	75831664	75831735	75831664	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75832067	75832096	75832067	ID=MS.gene052467.t1.exon5;Parent=MS.gene052467.t1
chr6.1	CDS	75832067	75832096	75832067	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75832617	75832746	75832617	ID=MS.gene052467.t1.exon6;Parent=MS.gene052467.t1
chr6.1	CDS	75832617	75832746	75832617	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75832807	75832953	75832807	ID=MS.gene052467.t1.exon7;Parent=MS.gene052467.t1
chr6.1	CDS	75832807	75832953	75832807	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75834598	75834711	75834598	ID=MS.gene052467.t1.exon8;Parent=MS.gene052467.t1
chr6.1	CDS	75834598	75834711	75834598	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75834807	75834865	75834807	ID=MS.gene052467.t1.exon9;Parent=MS.gene052467.t1
chr6.1	CDS	75834807	75834865	75834807	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75834982	75835171	75834982	ID=MS.gene052467.t1.exon10;Parent=MS.gene052467.t1
chr6.1	CDS	75834982	75835171	75834982	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1
chr6.1	exon	75835300	75835415	75835300	ID=MS.gene052467.t1.exon11;Parent=MS.gene052467.t1
chr6.1	CDS	75835300	75835415	75835300	ID=cds.MS.gene052467.t1;Parent=MS.gene052467.t1

Gene Sequence

>MS.gene052467

ATGAAGTTGAAAGCTCGAACCCCTTACCCCAGGGTCCTGGCTCCGCCACTGCATGAAGGTATTTTTTTTTTAGAAATCATTGTTTCTTTTATGTAACTGTGAAGTTTGTGTAGGATATTTCAAGAGATTTTTTCTTTGGTTTTGGGTTCAGCAGTTTGGTTCACACATCTAATTTAAAGTTAAGAATATATGTTTTACCATGTTGTTAGTCTTTTCAATCAAATTGGTGGACCACCAATCTAACAAGTGCTGCCTTTGTTGCAGGATCAATTTATTAGAAAACTACAAGCTTATGCATGCGAGGTTCAATAAGATACAAATTTCAGGTGAGGTTCCTTTGTCTTTTGGTTCATTTCTTTGCAATTTGTTTCATTGTAATTGATCAAAGGTGTGCATTTATTTGCCATTAACTTTCTGTCTTTTTCCTTGCAGGTTTTATGCTTAATCCATGATGCTATATCAAAGATTTTGGAGAAGGCCATTTTCAAAAGATTCTTCGCATTGGTAACTGTTTTGTCTATTTTTTCTTTGAAATAAGAATTTCTTTATTCTCTTGAACCATGTCTATTTGTGTTAAATGTCTCTTGGACCCCTATTATTGAAATGCACATTGGTTGTAGGAGAAAGGGTAACACGTGTTAACCTTGCTTACATGATTTATGTTAAAATGAAGTAACATTCGCTTGGACGAAGCTTTATTTTCTTTTTCGTGGCTATTTTAAGCCAAATAAACACAGGAGTCTAAATATGACTAGGCTCACACTTTTTTCATTTCATATAACTTATGTTATAATCTCTTTCTTTGTTTGTGTTTCATTGGAATATACTATAATAGACTGCACCTGCTGGGATCATAACTCAAGAAGTATGTTTTTATTCCTTTTTAAATGCTTTTTGTTGCATGATGATGAGTATATTGGCATGCTTGGATAAACAACTGAATTAAGTGTTTATAGCATAAGTGCATTTGTATAAGTTATTTCTATAATTAAAGATAGAGTCGATTTAAATCGACTTATTTGAACTTATCTCCCGAGTTCTAACGCAAACACTTGTGAGACTGTTTAAATTTAGATAGACAAAAAGTACTCATATGAGAAGTGTTTATGCTTTAAGTTGTTTATATCAAACAAGGTTAAAATAAAGTCAAATTGCTTTCATATAAGCTACAAGCTGTTTCATAAGCTATTATGGAGAGCTTATCCAAATAAACTGAAAAAATATTAAGAACACATCTTAAGATGTTTTCATAGGTTCTTCCAAATAGTCTCACAAGTGCTCGTGTCACTAGATAGATAAACACAAGTAAATTAATCCAAACATACCCTAAATAGGGAAATGTTTCATGTGAATAATGATGTCTATACATTAATTTTGGTTATCAGTGGTATGAAAGGAATTCAAGGGGATTGGAGATTTTCTGCAAAAGCTTGATGCCAGAACATGGCATTCCAATCAAAGGCGCTTTGTTTTTCTGTCATGGATATGGCAGTACTTGCACTTTCTTCTTTGAAGGTTTGTCTTTGTAGAGTTATCAAATTTGAGGATGGAGGATTAATTTGAATGATTGTTTAGGTATTGCAAGGAGAATTGCTGCTTCTGGATTTGGTGTTTATGCAATGGATTTTCCAGGTTTCGGTTTATCTGAAGGATTGCATGGTTATATACCAAGTTTTGATGATTTAGTCAAAGATGTTATAGAATTCCATACAAAAATTAAAGGTATGACCTTTTATTTTAGGTGATATTACCGTAATCGTTGTTGCAATCTATGTAAATAATAAGTACTTTTGTCGACCATGTGTAAAAAACTACAAGGAAAATGGAGAAAATGAAGGTTAGTTTAAAAAGGATGGAGGAAAAACACATATGCTGCTTTTTTCCATCATTGATTTTTAAGTAAAGGATTTTCATTCTCTCTGCGACTGTGATTAAGCTTGCATTAGCACATTTGACTGCGATTTTCACGACACTTCTGATATACATAGAGCCTGTTTGGTATAGTGGTGGGAGCATAAATACCACTTCCCAATGCTAACCCACCGTGATTTTTAGGAAGCTTAAAATTGTAGCTTTTGCCAAAACGTGGGTACAGGCCTCTTCCACCGCTGTACCAAACAGATACATAGAGCATTATACTGTATTTTGTTAACTAACTAACTAACTAACTCTACCAGAAATTAATTTTGCTGCTAGCTGAATAACTACTTGCTGATTGCCTTTCGATGTATTTATATCGACAGCTAGACCAGAGGTGAGGGATTTGCTGCAATTTATATTTGGACAGTCAATGGGTCTGATGAGTGTGATTTTCATTTGTATTTTGTAATTTTAAGTTGGATCCTATCAGAAAATCACACTCCTCTTGAGCTTCTGTTCATTTTTACTATATGCTAAAGGAATAACAACCTATAGATTGATTTTGGTCCTAAAGGAATAACAAGAATTTGACAAACCTATAAAGGTAGACCTAAGAAATTTTGATGTCCACTTTGAAGGATTCATATGAAGAGTCCGAATATTTGTTTTGGTTGGCTTGCATAGTTGTATTTCTTTAGTGTCTGTTTACATGGTAAGCTCAAAGGCTTAGTGATAACCCTATGATTACATCTCTAACGTGATTTGATAAATAGGTCAATGAATTTCATTTGCAGTCAAGCCAGTTTTGTTTCCAATAGGATGTAATATCAAGAGCTAATTACTAGAGAGTGATCTATTCTATTTACTACTCAGATTCGATGATTCCTCTCATTGTTTTGCTCTCAACTAATTTAAATTGAACATTATAAAAGGAATCATAAATTAAATTGATAATCCTTTTTTAGATTTATCCCGTTAAATCATGTGACACAGTTGAGGGGTAACCTTGGTGCAACTGGTAAAGTTGTTGTCATGTGACTGTAAGGTCACAGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTCAGTGCACCGGGTTGCCCTTTTTTTTTAAATCATGTGACACAGTTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACGCTGCATATGCGGGAGCTTCAGTGCACCGGGTTGCCCCTTTTTTAAATCATGTGACACAGTATCTATAGAAGTAGCTTCATAGTTTGAATGTATGAGTTGATTGTGAGTTGATTAAGGAACATAACAGTTTCAGATGGTTAGCTGTTTGATTACATTGCTAAATATGCAATATTGTTTGTGTGGTTTCCGTTAAATTACTATAATATTGTAAAATTTCCATTTGGTTCAGCAATTAAATGTGTTGAACAGGAACGGCTAAGTGGAGATACTGCTGTAATAGCTGAAACCGGATATTCATGGTTTAACTGTCAGAAGCTCCGTTTGCCTTGCCTGAGAATTGCGGGTAAGTCATTCACAACTTCTGCATGAGTAATGTGATAATTCCAACTTTCAGTTATGAATTCCAGATGCAGTATGGATCAATTGGTTGGTCAATAGGTGCACAGGCTGCAACAAATAAGTGTGTGATTGCATGCATTGGTGATGGCAGTTTTCAAGTTAGTAACATGATAAGAAAAGAAACTTTGTATTCAGAACATTAATGTTAAGTTTCACCAGCAGGTAAGCCTATTTATTAATTTATTTTTGGATGTATGTATGATGCCTTATTTAGGTGACGGCACAATATATTTTAACAATGATCCGTTGTGGACAAAAGAGCATCATCTTCCTCATTAAGAATGGAGGTTATACAATTGAAGTTGAGATTCATGATGGTCCATACAATGTGATCAAGAATTGGGACTATACCGGCTTTGTGAGTGCCATCCATAATGGACAATGGGAAATGCTGGACTGCCAAGGTTAGCACAAAATGAACAATTTATCTTGTGCCACTGTTTTGGTTTGTAATTTGGTTGAATGTTAAACACATTATAATTTGCATTATGTCATTTAATTGAATCTTTAAAATTCACTTTTGTGAGTGTAGGTACGTACAGAGGAAGATTTGACAGAAGCAATTGCAACAACCACTGGTGCAGAGAAAGATTCACTGTTTTATGGAAGTTTTTGCACTCAAGGATGACACCAGCAAAGAGTTGCTAG

Protein sequence

>MS.gene052467.t1

MKLKARTPYPRVLAPPLHEAVWINLLENYKLMHARFNKIQISGEVLCLIHDAISKILEKAIFKRFFALTAPAGIITQEWYERNSRGLEIFCKSLMPEHGIPIKGALFFCHGYGSTCTFFFEGIARRIAASGFGVYAMDFPGFGLSEGLHGYIPSFDDLVKDVIEFHTKIKAIKCVEQERLSGDTAVIAETGYSWFNCQKLRLPCLRIAGAQAATNKCVIACIGDGSFQVTAQYILTMIRCGQKSIIFLIKNGGYTIEVEIHDGPYNVIKNWDYTGFVSAIHNGQWEMLDCQGTYRGRFDRSNCNNHWCRERFTVLWKFLHSRMTPAKSC