Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57498.t1 | XP_013443654.1 | 96.2 | 288 | 8 | 2 | 1 | 286 | 1 | 287 | 4.60E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57498.t1 | Q9LEX0 | 59.3 | 290 | 112 | 3 | 1 | 287 | 1 | 287 | 6.9e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57498.t1 | A0A072TJF7 | 96.2 | 288 | 8 | 2 | 1 | 286 | 1 | 287 | 3.3e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052467 | MS.gene57498 | 0.803013 | 4.27E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene57498 | 0.809054 | 2.29E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene57498 | 0.813193 | 2.90E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene57498 | 0.803562 | 3.29E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene57498 | 0.815925 | 7.20E-52 | -1.69E-46 |
| MS.gene053900 | MS.gene57498 | 0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene05548 | MS.gene57498 | 0.809158 | 2.17E-50 | -1.69E-46 |
| MS.gene055801 | MS.gene57498 | 0.818081 | 2.36E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene57498 | 0.802205 | 6.27E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene57498 | 0.80267 | 5.03E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene57498 | 0.808509 | 2.99E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57498.t1 | MTR_0002s0020 | 95.848 | 289 | 9 | 2 | 1 | 287 | 1 | 288 | 0.0 | 572 |
| MS.gene57498.t1 | MTR_4g102770 | 60.606 | 264 | 102 | 1 | 23 | 286 | 19 | 280 | 3.30e-122 | 351 |
| MS.gene57498.t1 | MTR_1g101390 | 62.353 | 255 | 93 | 1 | 23 | 277 | 28 | 279 | 7.34e-121 | 348 |
| MS.gene57498.t1 | MTR_0113s0040 | 57.194 | 278 | 115 | 2 | 1 | 278 | 1 | 274 | 7.06e-120 | 345 |
| MS.gene57498.t1 | MTR_5g010800 | 55.749 | 287 | 116 | 3 | 1 | 286 | 1 | 277 | 2.62e-116 | 336 |
| MS.gene57498.t1 | MTR_7g103380 | 53.608 | 291 | 117 | 3 | 1 | 280 | 1 | 284 | 7.47e-108 | 315 |
| MS.gene57498.t1 | MTR_7g112560 | 25.843 | 267 | 163 | 5 | 26 | 275 | 4 | 252 | 1.52e-32 | 120 |
| MS.gene57498.t1 | MTR_4g023570 | 26.984 | 252 | 159 | 5 | 26 | 275 | 4 | 232 | 3.91e-29 | 111 |
| MS.gene57498.t1 | MTR_1g079140 | 36.806 | 144 | 89 | 2 | 25 | 167 | 15 | 157 | 1.83e-22 | 95.1 |
| MS.gene57498.t1 | MTR_7g112550 | 25.448 | 279 | 173 | 6 | 26 | 277 | 10 | 280 | 1.89e-22 | 94.7 |
| MS.gene57498.t1 | MTR_1g079260 | 29.384 | 211 | 127 | 4 | 25 | 232 | 6 | 197 | 6.21e-22 | 92.8 |
| MS.gene57498.t1 | MTR_1g083580 | 30.303 | 198 | 118 | 5 | 26 | 219 | 11 | 192 | 7.52e-22 | 92.8 |
| MS.gene57498.t1 | MTR_1g079180 | 25.564 | 266 | 176 | 7 | 25 | 277 | 6 | 262 | 2.07e-21 | 91.3 |
| MS.gene57498.t1 | MTR_1g079380 | 30.660 | 212 | 125 | 4 | 22 | 230 | 3 | 195 | 8.91e-21 | 90.1 |
| MS.gene57498.t1 | MTR_1g079460 | 32.298 | 161 | 104 | 3 | 25 | 182 | 6 | 164 | 2.26e-20 | 88.6 |
| MS.gene57498.t1 | MTR_1g079370 | 25.556 | 270 | 177 | 8 | 22 | 277 | 3 | 262 | 9.01e-20 | 87.0 |
| MS.gene57498.t1 | MTR_1g079200 | 25.670 | 261 | 177 | 7 | 25 | 275 | 6 | 259 | 2.11e-19 | 85.9 |
| MS.gene57498.t1 | MTR_1g079230 | 32.895 | 152 | 92 | 3 | 22 | 170 | 3 | 147 | 4.12e-19 | 85.1 |
| MS.gene57498.t1 | MTR_1g100597 | 25.362 | 276 | 171 | 9 | 25 | 277 | 6 | 269 | 5.38e-19 | 84.7 |
| MS.gene57498.t1 | MTR_1g100613 | 35.606 | 132 | 79 | 2 | 40 | 170 | 6 | 132 | 8.34e-19 | 84.0 |
| MS.gene57498.t1 | MTR_1g079850 | 31.056 | 161 | 107 | 3 | 25 | 182 | 6 | 165 | 4.47e-18 | 82.4 |
| MS.gene57498.t1 | MTR_3g452600 | 24.910 | 277 | 164 | 8 | 23 | 277 | 10 | 264 | 3.14e-17 | 80.1 |
| MS.gene57498.t1 | MTR_1g079410 | 30.137 | 146 | 100 | 2 | 26 | 170 | 11 | 155 | 2.79e-15 | 74.3 |
| MS.gene57498.t1 | MTR_1g079400 | 30.137 | 146 | 100 | 2 | 26 | 170 | 15 | 159 | 3.17e-14 | 71.6 |
| MS.gene57498.t1 | MTR_1g079250 | 32.000 | 150 | 93 | 3 | 25 | 170 | 6 | 150 | 1.57e-13 | 69.7 |
| MS.gene57498.t1 | MTR_3g450990 | 23.488 | 281 | 175 | 9 | 23 | 275 | 10 | 278 | 3.77e-13 | 68.6 |
| MS.gene57498.t1 | MTR_3g006850 | 26.816 | 179 | 112 | 6 | 19 | 182 | 13 | 187 | 7.28e-12 | 65.1 |
| MS.gene57498.t1 | MTR_1g079350 | 25.778 | 225 | 131 | 8 | 25 | 234 | 6 | 209 | 1.49e-11 | 63.9 |
| MS.gene57498.t1 | MTR_7g096300 | 26.131 | 199 | 124 | 4 | 25 | 220 | 6 | 184 | 1.77e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57498.t1 | AT3G61060 | 61.071 | 280 | 103 | 3 | 1 | 277 | 1 | 277 | 4.46e-125 | 358 |
| MS.gene57498.t1 | AT3G61060 | 60.854 | 281 | 103 | 4 | 1 | 277 | 1 | 278 | 2.85e-123 | 354 |
| MS.gene57498.t1 | AT1G12710 | 57.706 | 279 | 111 | 3 | 4 | 281 | 11 | 283 | 1.58e-113 | 329 |
| MS.gene57498.t1 | AT5G52120 | 56.757 | 259 | 109 | 1 | 23 | 278 | 21 | 279 | 1.55e-112 | 327 |
| MS.gene57498.t1 | AT1G63090 | 56.631 | 279 | 112 | 3 | 4 | 281 | 11 | 281 | 2.86e-105 | 308 |
| MS.gene57498.t1 | AT1G12710 | 50.156 | 321 | 111 | 4 | 4 | 281 | 11 | 325 | 1.58e-104 | 308 |
| MS.gene57498.t1 | AT3G53000 | 52.027 | 296 | 125 | 4 | 1 | 285 | 1 | 290 | 1.45e-103 | 304 |
| MS.gene57498.t1 | AT2G02360 | 33.544 | 158 | 94 | 3 | 27 | 181 | 18 | 167 | 1.11e-23 | 97.8 |
| MS.gene57498.t1 | AT1G09155 | 25.342 | 292 | 161 | 6 | 26 | 277 | 3 | 277 | 4.55e-23 | 96.3 |
| MS.gene57498.t1 | AT2G02240 | 27.481 | 262 | 165 | 7 | 26 | 275 | 64 | 312 | 5.21e-23 | 96.7 |
| MS.gene57498.t1 | AT2G02340 | 32.317 | 164 | 102 | 3 | 22 | 182 | 35 | 192 | 2.72e-22 | 94.7 |
| MS.gene57498.t1 | AT1G80110 | 26.996 | 263 | 174 | 7 | 23 | 277 | 1 | 253 | 3.67e-22 | 93.2 |
| MS.gene57498.t1 | AT2G02230 | 34.320 | 169 | 98 | 5 | 26 | 189 | 35 | 195 | 1.64e-21 | 92.8 |
| MS.gene57498.t1 | AT5G24560 | 27.879 | 165 | 104 | 3 | 25 | 182 | 5 | 161 | 1.75e-21 | 90.1 |
| MS.gene57498.t1 | AT2G02250 | 30.726 | 179 | 111 | 5 | 21 | 194 | 44 | 214 | 1.48e-19 | 87.0 |
| MS.gene57498.t1 | AT1G56250 | 28.641 | 206 | 128 | 3 | 26 | 229 | 4 | 192 | 1.14e-18 | 84.3 |
| MS.gene57498.t1 | AT2G02350 | 32.877 | 146 | 84 | 4 | 23 | 164 | 24 | 159 | 3.73e-18 | 82.8 |
| MS.gene57498.t1 | AT2G02320 | 24.648 | 284 | 158 | 10 | 23 | 277 | 40 | 296 | 4.00e-18 | 83.2 |
| MS.gene57498.t1 | AT2G02310 | 33.750 | 160 | 95 | 5 | 25 | 181 | 47 | 198 | 6.69e-18 | 82.4 |
| MS.gene57498.t1 | AT1G56240 | 24.068 | 295 | 161 | 8 | 26 | 277 | 4 | 278 | 3.24e-16 | 77.4 |
| MS.gene57498.t1 | AT2G02300 | 25.188 | 266 | 159 | 8 | 25 | 275 | 36 | 276 | 2.67e-14 | 72.0 |
Find 86 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTTGGTTTAGGAAATT+TGG | 0.134071 | 8.2:-65223402 | MS.gene57498:intron |
| TTGCTTATCTTCATCAAATT+TGG | 0.158739 | 8.2:-65222919 | MS.gene57498:CDS |
| GTTCCATTGTCAAATAAATT+AGG | 0.220564 | 8.2:+65223947 | None:intergenic |
| TGTATGTCCCTACTGGAAAT+TGG | 0.254973 | 8.2:+65222867 | None:intergenic |
| GGCATTGGTGTTGATGTATT+TGG | 0.267377 | 8.2:-65224158 | MS.gene57498:CDS |
| AACTCGTCGGCCGAGCTTCT+TGG | 0.292282 | 8.2:+65222811 | None:intergenic |
| CTCCAAAGCGTTAAGGATTA+CGG | 0.292357 | 8.2:-65223341 | MS.gene57498:CDS |
| TACTAGTTCTGGTGCTGAAC+TGG | 0.321424 | 8.2:-65224002 | MS.gene57498:CDS |
| CTGGATTGTCCAAATGAGTA+TGG | 0.340026 | 8.2:+65222705 | None:intergenic |
| GTCGTCAGCTGAAACTTTGC+AGG | 0.342371 | 8.2:+65222752 | None:intergenic |
| GAGGACTGGTGGGGTTTGTT+TGG | 0.351931 | 8.2:-65223371 | MS.gene57498:CDS |
| CCCCGTAATCCTTAACGCTT+TGG | 0.363217 | 8.2:+65223339 | None:intergenic |
| TGCTGTATCCCATACTCATT+TGG | 0.366142 | 8.2:-65222714 | MS.gene57498:CDS |
| GAGGATGATACTACTAGTTC+TGG | 0.381998 | 8.2:-65224013 | MS.gene57498:CDS |
| TAAGCTAGCACGATTGAATA+AGG | 0.383182 | 8.2:-65224119 | MS.gene57498:CDS |
| GGATTGATGATCGCAGATAT+TGG | 0.386282 | 8.2:-65223318 | MS.gene57498:CDS |
| TCCAAAGCGTTAAGGATTAC+GGG | 0.392021 | 8.2:-65223340 | MS.gene57498:CDS |
| GTTCTATGAGGCCAAAGCTT+GGG | 0.399364 | 8.2:-65224201 | MS.gene57498:CDS |
| CAATTTCCTCCAAAGCGTTA+AGG | 0.404456 | 8.2:-65223348 | MS.gene57498:CDS |
| GTTTATCATGGGGAAAGCTT+TGG | 0.404604 | 8.2:-65224035 | MS.gene57498:CDS |
| AGGAAATTTGGCTAGATAAG+AGG | 0.417127 | 8.2:-65223390 | MS.gene57498:CDS |
| CATGTGTATGTGATGGGGAT+GGG | 0.419594 | 8.2:-65224231 | MS.gene57498:CDS |
| CTTATCTTCATCAAATTTGG+TGG | 0.424285 | 8.2:-65222916 | MS.gene57498:CDS |
| GTTAAATTATGAGTTTATCA+TGG | 0.429309 | 8.2:-65224047 | MS.gene57498:CDS |
| CTTCGATTCCCAAACAAAAT+CGG | 0.438511 | 8.2:+65224075 | None:intergenic |
| ATGATAAACTCATAATTTAA+CGG | 0.452282 | 8.2:+65224049 | None:intergenic |
| ATGTGTATGTGATGGGGATG+GGG | 0.452601 | 8.2:-65224230 | MS.gene57498:CDS |
| GATGAAGATAAGCAACTGTA+TGG | 0.457688 | 8.2:+65222927 | None:intergenic |
| TCTGGTATATCCCCAAGCTT+TGG | 0.464588 | 8.2:+65224190 | None:intergenic |
| TTAAATTATGAGTTTATCAT+GGG | 0.466517 | 8.2:-65224046 | MS.gene57498:CDS |
| AGACCGAGCACATCCATGGC+TGG | 0.472037 | 8.2:-65222784 | MS.gene57498:CDS |
| CATACTCATTTGGACAATCC+AGG | 0.476869 | 8.2:-65222704 | MS.gene57498:CDS |
| CTGGTGCTGAACTGGGGAAG+AGG | 0.477003 | 8.2:-65223994 | MS.gene57498:CDS |
| ACTTCAGACTTCACCTTGGC+AGG | 0.477175 | 8.2:-65222838 | MS.gene57498:CDS |
| ACCAATGCCACACAACTCTC+TGG | 0.478399 | 8.2:+65224172 | None:intergenic |
| TCATGTGTATGTGATGGGGA+TGG | 0.483513 | 8.2:-65224232 | MS.gene57498:CDS |
| TATCATGGGGAAAGCTTTGG+AGG | 0.486059 | 8.2:-65224032 | MS.gene57498:CDS |
| CGTGCTAGCTTACATATATC+CGG | 0.487725 | 8.2:+65224130 | None:intergenic |
| CGTAATCCTTAACGCTTTGG+AGG | 0.488223 | 8.2:+65223342 | None:intergenic |
| TACACACTGTATGTCCCTAC+TGG | 0.496964 | 8.2:+65222860 | None:intergenic |
| ACTAGTTCTGGTGCTGAACT+GGG | 0.499653 | 8.2:-65224001 | MS.gene57498:CDS |
| TTTCCTCATGTGTATGTGAT+GGG | 0.501023 | 8.2:-65224237 | MS.gene57498:CDS |
| TCAAATTTGGTGGCTTGAAG+TGG | 0.515749 | 8.2:-65222906 | MS.gene57498:CDS |
| TTGATTTCCAATTTCCAGTA+GGG | 0.525554 | 8.2:-65222874 | MS.gene57498:CDS |
| AGTTCTATGAGGCCAAAGCT+TGG | 0.528263 | 8.2:-65224202 | MS.gene57498:CDS |
| ACCAGAGAGTTGTGTGGCAT+TGG | 0.531563 | 8.2:-65224173 | MS.gene57498:CDS |
| TTTCAGCTGACGACTTCTGA+TGG | 0.534756 | 8.2:-65222743 | MS.gene57498:CDS |
| GGCTAGATAAGAGGACTGGT+GGG | 0.535196 | 8.2:-65223381 | MS.gene57498:CDS |
| GGCAGGTCATCCAAGAAGCT+CGG | 0.535630 | 8.2:-65222821 | MS.gene57498:CDS |
| AATAGATTGCACTCATACCA+AGG | 0.535661 | 8.2:-65222600 | MS.gene57498:CDS |
| ATTGATTTCCAATTTCCAGT+AGG | 0.547843 | 8.2:-65222875 | MS.gene57498:CDS |
| GTCAACACACAAACCACCCT+TGG | 0.552331 | 8.2:+65222583 | None:intergenic |
| ATTTGGACAATCCAGGGCAC+TGG | 0.554734 | 8.2:-65222697 | MS.gene57498:CDS |
| AAGCCTAATTTATTTGACAA+TGG | 0.558666 | 8.2:-65223950 | MS.gene57498:CDS |
| GACCGAGCACATCCATGGCT+GGG | 0.560312 | 8.2:-65222783 | MS.gene57498:CDS |
| CAAAGTTTCCTACATGGTAG+AGG | 0.564462 | 8.2:+65222672 | None:intergenic |
| TTCTATGAGGCCAAAGCTTG+GGG | 0.564798 | 8.2:-65224200 | MS.gene57498:CDS |
| TGGTAGAGGATCCAGTGCCC+TGG | 0.568450 | 8.2:+65222686 | None:intergenic |
| TTCCTCATGTGTATGTGATG+GGG | 0.572484 | 8.2:-65224236 | MS.gene57498:CDS |
| TGGTGCTGAACTGGGGAAGA+GGG | 0.573216 | 8.2:-65223993 | MS.gene57498:CDS |
| ATCCCAGCCATGGATGTGCT+CGG | 0.573548 | 8.2:+65222781 | None:intergenic |
| ATTTGGTGGCTTGAAGTGGA+AGG | 0.573893 | 8.2:-65222902 | MS.gene57498:CDS |
| TAGAGACAAAGTTTCCTACA+TGG | 0.576728 | 8.2:+65222666 | None:intergenic |
| TGTAAGACCGAGCACATCCA+TGG | 0.577774 | 8.2:-65222788 | MS.gene57498:CDS |
| TTTATTTGACAATGGAACCA+AGG | 0.581946 | 8.2:-65223942 | MS.gene57498:intron |
| TGGCTAGATAAGAGGACTGG+TGG | 0.585604 | 8.2:-65223382 | MS.gene57498:CDS |
| TGGATTGTCCAAATGAGTAT+GGG | 0.593977 | 8.2:+65222706 | None:intergenic |
| GCTAGATAAGAGGACTGGTG+GGG | 0.594259 | 8.2:-65223380 | MS.gene57498:CDS |
| GTTGATGTATTTGGATCCAC+CGG | 0.598664 | 8.2:-65224149 | MS.gene57498:CDS |
| GCTTCTTGGATGACCTGCCA+AGG | 0.607702 | 8.2:+65222825 | None:intergenic |
| GATTGCACTCATACCAAGGG+TGG | 0.619652 | 8.2:-65222596 | MS.gene57498:CDS |
| CACTGGATCCTCTACCATGT+AGG | 0.625677 | 8.2:-65222680 | MS.gene57498:CDS |
| ATTTGGCTAGATAAGAGGAC+TGG | 0.635322 | 8.2:-65223385 | MS.gene57498:CDS |
| CCAAAGCGTTAAGGATTACG+GGG | 0.637475 | 8.2:-65223339 | MS.gene57498:CDS |
| ATGGGGATTGTAGTTCTATG+AGG | 0.637876 | 8.2:-65224213 | MS.gene57498:CDS |
| ACATTTCAACTGAAGAGTCA+AGG | 0.639529 | 8.2:-65223291 | MS.gene57498:intron |
| ATACTCATTTGGACAATCCA+GGG | 0.642583 | 8.2:-65222703 | MS.gene57498:CDS |
| GCTACTATTGCATATAAGCA+CGG | 0.643154 | 8.2:+65222559 | None:intergenic |
| TAAATTATGAGTTTATCATG+GGG | 0.648208 | 8.2:-65224045 | MS.gene57498:CDS |
| GCTAGCTTACATATATCCGG+TGG | 0.658843 | 8.2:+65224133 | None:intergenic |
| ATCCCCATCACATACACATG+AGG | 0.663735 | 8.2:+65224234 | None:intergenic |
| ATAGATTGCACTCATACCAA+GGG | 0.671071 | 8.2:-65222599 | MS.gene57498:CDS |
| CTAGTTCTGGTGCTGAACTG+GGG | 0.675701 | 8.2:-65224000 | MS.gene57498:CDS |
| GTGTACTTCAGACTTCACCT+TGG | 0.710985 | 8.2:-65222842 | MS.gene57498:CDS |
| GCTCGGTCTTACAAACTCGT+CGG | 0.720767 | 8.2:+65222798 | None:intergenic |
| GGATATACCAGAGAGTTGTG+TGG | 0.728873 | 8.2:-65224179 | MS.gene57498:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATAAACTCATAATTTAA+CGG | + | chr8.2:65222742-65222761 | None:intergenic | 15.0% |
| !! | GGCAAAAAAAAAAAATATTT+CGG | + | chr8.2:65223628-65223647 | None:intergenic | 15.0% |
| !! | TTAAATTATGAGTTTATCAT+GGG | - | chr8.2:65222742-65222761 | MS.gene57498:CDS | 15.0% |
| !!! | ACTTTTATTTTGTGTATAAA+AGG | - | chr8.2:65222915-65222934 | MS.gene57498:CDS | 15.0% |
| !!! | CTTTTATTTTGTGTATAAAA+GGG | - | chr8.2:65222916-65222935 | MS.gene57498:CDS | 15.0% |
| !!! | TTATGTCAAAAATTTTACTT+TGG | - | chr8.2:65223372-65223391 | MS.gene57498:CDS | 15.0% |
| !! | ACTTATTAGGCTATAATATT+GGG | + | chr8.2:65223187-65223206 | None:intergenic | 20.0% |
| !! | ATTCTTGATTGTATGTAAAT+AGG | - | chr8.2:65223836-65223855 | MS.gene57498:intron | 20.0% |
| !! | GTTAAATTATGAGTTTATCA+TGG | - | chr8.2:65222741-65222760 | MS.gene57498:CDS | 20.0% |
| !! | TAAATTATGAGTTTATCATG+GGG | - | chr8.2:65222743-65222762 | MS.gene57498:CDS | 20.0% |
| !! | TACTTATTAGGCTATAATAT+TGG | + | chr8.2:65223188-65223207 | None:intergenic | 20.0% |
| !!! | CAAAAATTTTACTTTGGTTT+AGG | - | chr8.2:65223378-65223397 | MS.gene57498:CDS | 20.0% |
| ! | AAGCCTAATTTATTTGACAA+TGG | - | chr8.2:65222838-65222857 | MS.gene57498:CDS | 25.0% |
| ! | CATGACATAACTTAATAAAG+TGG | + | chr8.2:65223333-65223352 | None:intergenic | 25.0% |
| ! | CTAACTTATTCTTGCAAAAT+CGG | + | chr8.2:65223076-65223095 | None:intergenic | 25.0% |
| ! | GTTCCATTGTCAAATAAATT+AGG | + | chr8.2:65222844-65222863 | None:intergenic | 25.0% |
| ! | TAGTTATGAAGATTGAAGAA+TGG | - | chr8.2:65223695-65223714 | MS.gene57498:intron | 25.0% |
| ! | TTGCTTATCTTCATCAAATT+TGG | - | chr8.2:65223869-65223888 | MS.gene57498:intron | 25.0% |
| !! | TGTGTTTTCATCTTTATGAA+TGG | - | chr8.2:65223583-65223602 | MS.gene57498:intron | 25.0% |
| !! | TTACTTTGGTTTAGGAAATT+TGG | - | chr8.2:65223386-65223405 | MS.gene57498:CDS | 25.0% |
| !!! | ATTTTTTTCCAATACTACCA+AGG | + | chr8.2:65222977-65222996 | None:intergenic | 25.0% |
| AACTTAATCTCTTATCAACG+TGG | + | chr8.2:65223006-65223025 | None:intergenic | 30.0% | |
| AGTGGAATCAATCAATCAAA+GGG | + | chr8.2:65223649-65223668 | None:intergenic | 30.0% | |
| ATCAAGTTCAAACATAACTG+CGG | + | chr8.2:65223808-65223827 | None:intergenic | 30.0% | |
| CACATAAAAACTTAGTATCG+TGG | - | chr8.2:65223288-65223307 | MS.gene57498:intron | 30.0% | |
| CTTATCTTCATCAAATTTGG+TGG | - | chr8.2:65223872-65223891 | MS.gene57498:intron | 30.0% | |
| TATTAGGCTATAATATTGGG+TGG | + | chr8.2:65223184-65223203 | None:intergenic | 30.0% | |
| TCATAACCATTGTAAAGAGT+TGG | + | chr8.2:65223736-65223755 | None:intergenic | 30.0% | |
| TCGTTATCATAAATGCAAAG+TGG | + | chr8.2:65223143-65223162 | None:intergenic | 30.0% | |
| TTGATTTCCAATTTCCAGTA+GGG | - | chr8.2:65223914-65223933 | MS.gene57498:intron | 30.0% | |
| TTTATTTGACAATGGAACCA+AGG | - | chr8.2:65222846-65222865 | MS.gene57498:CDS | 30.0% | |
| ! | AATGGGTTTCTATTTCACTT+TGG | + | chr8.2:65223235-65223254 | None:intergenic | 30.0% |
| ! | ACTTTTCCAACTCTTTACAA+TGG | - | chr8.2:65223727-65223746 | MS.gene57498:intron | 30.0% |
| ! | ATTGATTGATTCCACTGTAT+TGG | - | chr8.2:65223653-65223672 | MS.gene57498:intron | 30.0% |
| ! | ATTGATTTCCAATTTCCAGT+AGG | - | chr8.2:65223913-65223932 | MS.gene57498:intron | 30.0% |
| !! | CTATAATATTGGGTGGATTT+TGG | + | chr8.2:65223177-65223196 | None:intergenic | 30.0% |
| !!! | TTCTTTTGCCGATTTTGTTT+GGG | - | chr8.2:65222705-65222724 | MS.gene57498:CDS | 30.0% |
| AATAGATTGCACTCATACCA+AGG | - | chr8.2:65224188-65224207 | MS.gene57498:CDS | 35.0% | |
| ACATTTCAACTGAAGAGTCA+AGG | - | chr8.2:65223497-65223516 | MS.gene57498:intron | 35.0% | |
| AGGAAATTTGGCTAGATAAG+AGG | - | chr8.2:65223398-65223417 | MS.gene57498:intron | 35.0% | |
| ATACTCATTTGGACAATCCA+GGG | - | chr8.2:65224085-65224104 | MS.gene57498:CDS | 35.0% | |
| ATAGATTGCACTCATACCAA+GGG | - | chr8.2:65224189-65224208 | MS.gene57498:CDS | 35.0% | |
| ATGAGCCAAAATTGTTACCT+TGG | + | chr8.2:65222866-65222885 | None:intergenic | 35.0% | |
| CAATGAGTCAGGTTCTATAA+TGG | + | chr8.2:65223557-65223576 | None:intergenic | 35.0% | |
| CAGTGGAATCAATCAATCAA+AGG | + | chr8.2:65223650-65223669 | None:intergenic | 35.0% | |
| CTTCGATTCCCAAACAAAAT+CGG | + | chr8.2:65222716-65222735 | None:intergenic | 35.0% | |
| CTTGAATTCGTGATGCTAAT+GGG | + | chr8.2:65223252-65223271 | None:intergenic | 35.0% | |
| GATGAAGATAAGCAACTGTA+TGG | + | chr8.2:65223864-65223883 | None:intergenic | 35.0% | |
| GCTACTATTGCATATAAGCA+CGG | + | chr8.2:65224232-65224251 | None:intergenic | 35.0% | |
| TAAGCTAGCACGATTGAATA+AGG | - | chr8.2:65222669-65222688 | MS.gene57498:CDS | 35.0% | |
| TAGAGACAAAGTTTCCTACA+TGG | + | chr8.2:65224125-65224144 | None:intergenic | 35.0% | |
| TCAAGTTCAAACATAACTGC+GGG | + | chr8.2:65223807-65223826 | None:intergenic | 35.0% | |
| TCTTGAATTCGTGATGCTAA+TGG | + | chr8.2:65223253-65223272 | None:intergenic | 35.0% | |
| TGGATTGTCCAAATGAGTAT+GGG | + | chr8.2:65224085-65224104 | None:intergenic | 35.0% | |
| TTTCCTCATGTGTATGTGAT+GGG | - | chr8.2:65222551-65222570 | MS.gene57498:CDS | 35.0% | |
| ! | TGGAACCAAGGTAACAATTT+TGG | - | chr8.2:65222858-65222877 | MS.gene57498:CDS | 35.0% |
| ! | TTTTCCTCATGTGTATGTGA+TGG | - | chr8.2:65222550-65222569 | MS.gene57498:CDS | 35.0% |
| !! | AATATTGGGTGGATTTTGGT+TGG | + | chr8.2:65223173-65223192 | None:intergenic | 35.0% |
| !!! | CTTCTTTTGCCGATTTTGTT+TGG | - | chr8.2:65222704-65222723 | MS.gene57498:CDS | 35.0% |
| AAGTTCAAACATAACTGCGG+GGG | + | chr8.2:65223805-65223824 | None:intergenic | 40.0% | |
| AATACTACCAAGGATCCGAA+TGG | + | chr8.2:65222967-65222986 | None:intergenic | 40.0% | |
| ACACAGCATAACAATGAGTC+AGG | + | chr8.2:65223568-65223587 | None:intergenic | 40.0% | |
| AGAAAGTGAGTCCAATACAG+TGG | + | chr8.2:65223667-65223686 | None:intergenic | 40.0% | |
| ATCCAATACCAACTCTACTG+TGG | - | chr8.2:65223755-65223774 | MS.gene57498:intron | 40.0% | |
| ATCCATATCCACAGTAGAGT+TGG | + | chr8.2:65223766-65223785 | None:intergenic | 40.0% | |
| ATTTGGCTAGATAAGAGGAC+TGG | - | chr8.2:65223403-65223422 | MS.gene57498:intron | 40.0% | |
| CAAAGTTTCCTACATGGTAG+AGG | + | chr8.2:65224119-65224138 | None:intergenic | 40.0% | |
| CAAGTTCAAACATAACTGCG+GGG | + | chr8.2:65223806-65223825 | None:intergenic | 40.0% | |
| CATACTCATTTGGACAATCC+AGG | - | chr8.2:65224084-65224103 | MS.gene57498:CDS | 40.0% | |
| CTGGATTGTCCAAATGAGTA+TGG | + | chr8.2:65224086-65224105 | None:intergenic | 40.0% | |
| GACTGCACAAGCTACTTATT+AGG | + | chr8.2:65223200-65223219 | None:intergenic | 40.0% | |
| GAGGATGATACTACTAGTTC+TGG | - | chr8.2:65222775-65222794 | MS.gene57498:CDS | 40.0% | |
| GTTGATGTATTTGGATCCAC+CGG | - | chr8.2:65222639-65222658 | MS.gene57498:CDS | 40.0% | |
| GTTTATCATGGGGAAAGCTT+TGG | - | chr8.2:65222753-65222772 | MS.gene57498:CDS | 40.0% | |
| TACCAACTCTACTGTGGATA+TGG | - | chr8.2:65223761-65223780 | MS.gene57498:intron | 40.0% | |
| TGCTGTATCCCATACTCATT+TGG | - | chr8.2:65224074-65224093 | MS.gene57498:CDS | 40.0% | |
| TGTATGTCCCTACTGGAAAT+TGG | + | chr8.2:65223924-65223943 | None:intergenic | 40.0% | |
| TTCCTCATGTGTATGTGATG+GGG | - | chr8.2:65222552-65222571 | MS.gene57498:CDS | 40.0% | |
| ! | ATGGGGATTGTAGTTCTATG+AGG | - | chr8.2:65222575-65222594 | MS.gene57498:CDS | 40.0% |
| ! | ATTCGGATCCTTGGTAGTAT+TGG | - | chr8.2:65222966-65222985 | MS.gene57498:intron | 40.0% |
| ! | CAATTTCCTCCAAAGCGTTA+AGG | - | chr8.2:65223440-65223459 | MS.gene57498:intron | 40.0% |
| ! | CGTGCTAGCTTACATATATC+CGG | + | chr8.2:65222661-65222680 | None:intergenic | 40.0% |
| ! | CTCCAAAGCGTTAAGGATTA+CGG | - | chr8.2:65223447-65223466 | MS.gene57498:intron | 40.0% |
| ! | CTTGCAAAATCGGCTTTGTA+AGG | + | chr8.2:65223066-65223085 | None:intergenic | 40.0% |
| ! | GGATTGATGATCGCAGATAT+TGG | - | chr8.2:65223470-65223489 | MS.gene57498:intron | 40.0% |
| ! | TCAAATTTGGTGGCTTGAAG+TGG | - | chr8.2:65223882-65223901 | MS.gene57498:intron | 40.0% |
| ! | TCCAAAGCGTTAAGGATTAC+GGG | - | chr8.2:65223448-65223467 | MS.gene57498:intron | 40.0% |
| !! | ATCCACAGTAGAGTTGGTAT+TGG | + | chr8.2:65223760-65223779 | None:intergenic | 40.0% |
| !! | GGCATTGGTGTTGATGTATT+TGG | - | chr8.2:65222630-65222649 | MS.gene57498:CDS | 40.0% |
| !!! | GGGTTTTGAATTCTCTCAAG+CGG | - | chr8.2:65222936-65222955 | MS.gene57498:intron | 40.0% |
| AGTTCTATGAGGCCAAAGCT+TGG | - | chr8.2:65222586-65222605 | MS.gene57498:CDS | 45.0% | |
| ATCCCCATCACATACACATG+AGG | + | chr8.2:65222557-65222576 | None:intergenic | 45.0% | |
| CGTAATCCTTAACGCTTTGG+AGG | + | chr8.2:65223449-65223468 | None:intergenic | 45.0% | |
| GGATATACCAGAGAGTTGTG+TGG | - | chr8.2:65222609-65222628 | MS.gene57498:CDS | 45.0% | |
| GTGTACTTCAGACTTCACCT+TGG | - | chr8.2:65223946-65223965 | MS.gene57498:CDS | 45.0% | |
| GTTCTATGAGGCCAAAGCTT+GGG | - | chr8.2:65222587-65222606 | MS.gene57498:CDS | 45.0% | |
| TACACACTGTATGTCCCTAC+TGG | + | chr8.2:65223931-65223950 | None:intergenic | 45.0% | |
| TCAACTGAAGAGTCAAGGTG+AGG | - | chr8.2:65223502-65223521 | MS.gene57498:intron | 45.0% | |
| TCTGGTATATCCCCAAGCTT+TGG | + | chr8.2:65222601-65222620 | None:intergenic | 45.0% | |
| TTCTATGAGGCCAAAGCTTG+GGG | - | chr8.2:65222588-65222607 | MS.gene57498:CDS | 45.0% | |
| TTTCAGCTGACGACTTCTGA+TGG | - | chr8.2:65224045-65224064 | MS.gene57498:CDS | 45.0% | |
| ! | ATGTGTATGTGATGGGGATG+GGG | - | chr8.2:65222558-65222577 | MS.gene57498:CDS | 45.0% |
| ! | ATTTGGTGGCTTGAAGTGGA+AGG | - | chr8.2:65223886-65223905 | MS.gene57498:intron | 45.0% |
| ! | CATGTGTATGTGATGGGGAT+GGG | - | chr8.2:65222557-65222576 | MS.gene57498:CDS | 45.0% |
| ! | CCAAAGCGTTAAGGATTACG+GGG | - | chr8.2:65223449-65223468 | MS.gene57498:intron | 45.0% |
| ! | GCTAGCTTACATATATCCGG+TGG | + | chr8.2:65222658-65222677 | None:intergenic | 45.0% |
| ! | TATCATGGGGAAAGCTTTGG+AGG | - | chr8.2:65222756-65222775 | MS.gene57498:CDS | 45.0% |
| ! | TCATGTGTATGTGATGGGGA+TGG | - | chr8.2:65222556-65222575 | MS.gene57498:CDS | 45.0% |
| !! | ACTAGTTCTGGTGCTGAACT+GGG | - | chr8.2:65222787-65222806 | MS.gene57498:CDS | 45.0% |
| !! | CAGGTTTTATATCCCAGCCA+TGG | + | chr8.2:65224020-65224039 | None:intergenic | 45.0% |
| !! | TACTAGTTCTGGTGCTGAAC+TGG | - | chr8.2:65222786-65222805 | MS.gene57498:CDS | 45.0% |
| ACCAATGCCACACAACTCTC+TGG | + | chr8.2:65222619-65222638 | None:intergenic | 50.0% | |
| ACCAGAGAGTTGTGTGGCAT+TGG | - | chr8.2:65222615-65222634 | MS.gene57498:CDS | 50.0% | |
| ACTTCAGACTTCACCTTGGC+AGG | - | chr8.2:65223950-65223969 | MS.gene57498:CDS | 50.0% | |
| ATTTGGACAATCCAGGGCAC+TGG | - | chr8.2:65224091-65224110 | MS.gene57498:CDS | 50.0% | |
| CACTGGATCCTCTACCATGT+AGG | - | chr8.2:65224108-65224127 | MS.gene57498:CDS | 50.0% | |
| CCCCGTAATCCTTAACGCTT+TGG | + | chr8.2:65223452-65223471 | None:intergenic | 50.0% | |
| GATTGCACTCATACCAAGGG+TGG | - | chr8.2:65224192-65224211 | MS.gene57498:CDS | 50.0% | |
| GCTCGGTCTTACAAACTCGT+CGG | + | chr8.2:65223993-65224012 | None:intergenic | 50.0% | |
| GTCAACACACAAACCACCCT+TGG | + | chr8.2:65224208-65224227 | None:intergenic | 50.0% | |
| GTCGTCAGCTGAAACTTTGC+AGG | + | chr8.2:65224039-65224058 | None:intergenic | 50.0% | |
| TCTCAAGCGGCTACACCATT+CGG | - | chr8.2:65222949-65222968 | MS.gene57498:intron | 50.0% | |
| TGGCTAGATAAGAGGACTGG+TGG | - | chr8.2:65223406-65223425 | MS.gene57498:intron | 50.0% | |
| TGTAAGACCGAGCACATCCA+TGG | - | chr8.2:65224000-65224019 | MS.gene57498:CDS | 50.0% | |
| ! | GCTAGATAAGAGGACTGGTG+GGG | - | chr8.2:65223408-65223427 | MS.gene57498:intron | 50.0% |
| ! | GGCTAGATAAGAGGACTGGT+GGG | - | chr8.2:65223407-65223426 | MS.gene57498:intron | 50.0% |
| !! | CTAGTTCTGGTGCTGAACTG+GGG | - | chr8.2:65222788-65222807 | MS.gene57498:CDS | 50.0% |
| ATCCCAGCCATGGATGTGCT+CGG | + | chr8.2:65224010-65224029 | None:intergenic | 55.0% | |
| GCTTCTTGGATGACCTGCCA+AGG | + | chr8.2:65223966-65223985 | None:intergenic | 55.0% | |
| GGCAGGTCATCCAAGAAGCT+CGG | - | chr8.2:65223967-65223986 | MS.gene57498:CDS | 55.0% | |
| GGCTACACCATTCGGATCCT+TGG | - | chr8.2:65222957-65222976 | MS.gene57498:intron | 55.0% | |
| ! | GAGGACTGGTGGGGTTTGTT+TGG | - | chr8.2:65223417-65223436 | MS.gene57498:intron | 55.0% |
| ! | TGGTGCTGAACTGGGGAAGA+GGG | - | chr8.2:65222795-65222814 | MS.gene57498:CDS | 55.0% |
| AACTCGTCGGCCGAGCTTCT+TGG | + | chr8.2:65223980-65223999 | None:intergenic | 60.0% | |
| AGACCGAGCACATCCATGGC+TGG | - | chr8.2:65224004-65224023 | MS.gene57498:CDS | 60.0% | |
| GACCGAGCACATCCATGGCT+GGG | - | chr8.2:65224005-65224024 | MS.gene57498:CDS | 60.0% | |
| TGGTAGAGGATCCAGTGCCC+TGG | + | chr8.2:65224105-65224124 | None:intergenic | 60.0% | |
| ! | CTGGTGCTGAACTGGGGAAG+AGG | - | chr8.2:65222794-65222813 | MS.gene57498:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 65222538 | 65224272 | 65222538 | ID=MS.gene57498 |
| chr8.2 | mRNA | 65222538 | 65224272 | 65222538 | ID=MS.gene57498.t1;Parent=MS.gene57498 |
| chr8.2 | exon | 65223943 | 65224272 | 65223943 | ID=MS.gene57498.t1.exon1;Parent=MS.gene57498.t1 |
| chr8.2 | CDS | 65223943 | 65224272 | 65223943 | ID=cds.MS.gene57498.t1;Parent=MS.gene57498.t1 |
| chr8.2 | exon | 65223292 | 65223410 | 65223292 | ID=MS.gene57498.t1.exon2;Parent=MS.gene57498.t1 |
| chr8.2 | CDS | 65223292 | 65223410 | 65223292 | ID=cds.MS.gene57498.t1;Parent=MS.gene57498.t1 |
| chr8.2 | exon | 65222538 | 65222952 | 65222538 | ID=MS.gene57498.t1.exon3;Parent=MS.gene57498.t1 |
| chr8.2 | CDS | 65222538 | 65222952 | 65222538 | ID=cds.MS.gene57498.t1;Parent=MS.gene57498.t1 |
| Gene Sequence |
| Protein sequence |
