Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49120.t1 | XP_013469643.1 | 98.7 | 315 | 4 | 0 | 1 | 315 | 1 | 315 | 1.70E-172 | 615.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49120.t1 | Q6RVV4 | 81.0 | 316 | 59 | 1 | 1 | 315 | 1 | 316 | 2.0e-145 | 516.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49120.t1 | A0A072VPT5 | 98.7 | 315 | 4 | 0 | 1 | 315 | 1 | 315 | 1.3e-172 | 615.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene49120 | 0.80957 | 1.77E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene49120 | 0.848397 | 6.29E-60 | -1.69E-46 |
| MS.gene050026 | MS.gene49120 | 0.806727 | 7.15E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene49120 | 0.824881 | 6.35E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene49120 | 0.822489 | 2.31E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene49120 | 0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene49120 | 0.836467 | 9.20E-57 | -1.69E-46 |
| MS.gene052208 | MS.gene49120 | 0.814412 | 1.56E-51 | -1.69E-46 |
| MS.gene052467 | MS.gene49120 | 0.805989 | 1.02E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene49120 | 0.801315 | 9.54E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene49120 | 0.809769 | 1.61E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene49120 | 0.808264 | 3.37E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene49120 | 0.803664 | 3.13E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene49120 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene49120 | 0.813445 | 2.55E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene49120 | 0.811406 | 7.11E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene49120 | 0.808809 | 2.58E-50 | -1.69E-46 |
| MS.gene061155 | MS.gene49120 | 0.869968 | 2.08E-66 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49120.t1 | MTR_1g100315 | 98.730 | 315 | 4 | 0 | 1 | 315 | 1 | 315 | 0.0 | 642 |
| MS.gene49120.t1 | MTR_1g100305 | 82.857 | 315 | 54 | 0 | 1 | 315 | 1 | 315 | 0.0 | 555 |
| MS.gene49120.t1 | MTR_1g100395 | 84.615 | 312 | 48 | 0 | 1 | 312 | 1 | 312 | 0.0 | 546 |
| MS.gene49120.t1 | MTR_1g100335 | 83.492 | 315 | 52 | 0 | 1 | 315 | 1 | 315 | 0.0 | 545 |
| MS.gene49120.t1 | MTR_8g098415 | 68.889 | 315 | 98 | 0 | 1 | 315 | 1 | 315 | 3.56e-162 | 454 |
| MS.gene49120.t1 | MTR_8g098415 | 69.805 | 308 | 93 | 0 | 1 | 308 | 1 | 308 | 9.06e-161 | 451 |
| MS.gene49120.t1 | MTR_6g053550 | 69.055 | 307 | 92 | 1 | 10 | 313 | 18 | 324 | 1.78e-154 | 435 |
| MS.gene49120.t1 | MTR_1g100335 | 83.740 | 246 | 40 | 0 | 1 | 246 | 1 | 246 | 9.43e-151 | 424 |
| MS.gene49120.t1 | MTR_1g100335 | 83.740 | 246 | 40 | 0 | 1 | 246 | 1 | 246 | 1.04e-150 | 423 |
| MS.gene49120.t1 | MTR_8g098415 | 68.992 | 258 | 80 | 0 | 58 | 315 | 1 | 258 | 1.04e-131 | 375 |
| MS.gene49120.t1 | MTR_1g068970 | 58.361 | 305 | 127 | 0 | 8 | 312 | 13 | 317 | 2.82e-128 | 369 |
| MS.gene49120.t1 | MTR_7g099850 | 58.170 | 306 | 127 | 1 | 8 | 312 | 13 | 318 | 1.71e-127 | 367 |
| MS.gene49120.t1 | MTR_6g053600 | 67.176 | 262 | 83 | 1 | 10 | 268 | 4 | 265 | 1.27e-123 | 356 |
| MS.gene49120.t1 | MTR_8g098415 | 74.429 | 219 | 56 | 0 | 1 | 219 | 1 | 219 | 9.77e-117 | 336 |
| MS.gene49120.t1 | MTR_1g068970 | 57.085 | 247 | 106 | 0 | 66 | 312 | 4 | 250 | 5.47e-101 | 297 |
| MS.gene49120.t1 | MTR_3g077410 | 43.910 | 312 | 171 | 2 | 8 | 315 | 13 | 324 | 1.16e-85 | 261 |
| MS.gene49120.t1 | MTR_8g099995 | 45.902 | 305 | 161 | 3 | 8 | 308 | 13 | 317 | 6.53e-85 | 259 |
| MS.gene49120.t1 | MTR_4g105310 | 43.269 | 312 | 173 | 2 | 8 | 315 | 24 | 335 | 3.39e-80 | 247 |
| MS.gene49120.t1 | MTR_4g105310 | 44.856 | 243 | 130 | 2 | 8 | 246 | 24 | 266 | 9.91e-62 | 197 |
| MS.gene49120.t1 | MTR_1g100345 | 63.514 | 74 | 27 | 0 | 33 | 106 | 4 | 77 | 1.95e-26 | 100 |
| MS.gene49120.t1 | MTR_6g081020 | 29.276 | 304 | 186 | 9 | 30 | 312 | 62 | 357 | 3.20e-26 | 107 |
| MS.gene49120.t1 | MTR_6g041980 | 28.195 | 266 | 169 | 5 | 25 | 285 | 62 | 310 | 1.75e-25 | 104 |
| MS.gene49120.t1 | MTR_2g079710 | 29.712 | 313 | 185 | 10 | 31 | 312 | 88 | 396 | 1.88e-22 | 97.1 |
| MS.gene49120.t1 | MTR_3g091070 | 28.477 | 302 | 168 | 11 | 32 | 312 | 43 | 317 | 1.81e-20 | 90.5 |
| MS.gene49120.t1 | MTR_6g453040 | 29.139 | 302 | 184 | 10 | 32 | 312 | 43 | 335 | 2.18e-19 | 87.8 |
| MS.gene49120.t1 | MTR_6g041980 | 28.866 | 194 | 131 | 2 | 25 | 218 | 62 | 248 | 9.52e-19 | 84.7 |
| MS.gene49120.t1 | MTR_3g009190 | 29.139 | 302 | 184 | 10 | 32 | 312 | 65 | 357 | 9.73e-19 | 85.9 |
| MS.gene49120.t1 | MTR_3g009190 | 29.139 | 302 | 184 | 10 | 32 | 312 | 83 | 375 | 1.38e-18 | 85.9 |
| MS.gene49120.t1 | MTR_3g009190 | 28.904 | 301 | 184 | 10 | 33 | 312 | 65 | 356 | 1.89e-16 | 79.3 |
| MS.gene49120.t1 | MTR_4g087460 | 28.512 | 242 | 139 | 6 | 32 | 239 | 24 | 265 | 3.80e-13 | 69.3 |
| MS.gene49120.t1 | MTR_6g453040 | 30.049 | 203 | 121 | 6 | 32 | 220 | 65 | 260 | 1.00e-11 | 65.1 |
| MS.gene49120.t1 | MTR_8g022500 | 35.398 | 113 | 48 | 2 | 34 | 146 | 431 | 518 | 2.74e-11 | 64.7 |
| MS.gene49120.t1 | MTR_6g453040 | 30.108 | 186 | 111 | 5 | 32 | 203 | 65 | 245 | 3.51e-11 | 62.8 |
| MS.gene49120.t1 | MTR_7g076660 | 26.280 | 293 | 152 | 9 | 32 | 283 | 9 | 278 | 9.04e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49120.t1 | AT4G11410 | 71.111 | 315 | 91 | 0 | 1 | 315 | 1 | 315 | 4.59e-168 | 469 |
| MS.gene49120.t1 | AT4G23420 | 70.253 | 316 | 93 | 1 | 1 | 315 | 1 | 316 | 2.91e-166 | 465 |
| MS.gene49120.t1 | AT4G23420 | 70.253 | 316 | 93 | 1 | 1 | 315 | 1 | 316 | 2.91e-166 | 465 |
| MS.gene49120.t1 | AT4G23430 | 70.513 | 312 | 91 | 1 | 1 | 311 | 1 | 312 | 7.35e-166 | 464 |
| MS.gene49120.t1 | AT4G23420 | 70.323 | 310 | 91 | 1 | 3 | 311 | 20 | 329 | 6.23e-163 | 457 |
| MS.gene49120.t1 | AT4G23430 | 69.872 | 312 | 91 | 2 | 1 | 311 | 1 | 310 | 1.80e-162 | 455 |
| MS.gene49120.t1 | AT4G23430 | 67.628 | 312 | 90 | 2 | 1 | 311 | 1 | 302 | 1.13e-155 | 438 |
| MS.gene49120.t1 | AT4G23430 | 66.987 | 312 | 90 | 3 | 1 | 311 | 1 | 300 | 2.55e-152 | 429 |
| MS.gene49120.t1 | AT4G23420 | 71.374 | 262 | 74 | 1 | 1 | 261 | 1 | 262 | 8.66e-138 | 391 |
| MS.gene49120.t1 | AT4G23420 | 72.874 | 247 | 66 | 1 | 1 | 246 | 1 | 247 | 6.55e-132 | 376 |
| MS.gene49120.t1 | AT4G11410 | 73.469 | 245 | 65 | 0 | 1 | 245 | 1 | 245 | 5.11e-130 | 371 |
| MS.gene49120.t1 | AT2G37540 | 55.375 | 307 | 137 | 0 | 6 | 312 | 10 | 316 | 6.79e-125 | 360 |
| MS.gene49120.t1 | AT5G02540 | 58.958 | 307 | 126 | 0 | 6 | 312 | 10 | 316 | 6.82e-124 | 358 |
| MS.gene49120.t1 | AT2G37540 | 57.627 | 236 | 100 | 0 | 6 | 241 | 10 | 245 | 1.14e-98 | 291 |
| MS.gene49120.t1 | AT4G24050 | 46.429 | 308 | 162 | 2 | 8 | 312 | 13 | 320 | 2.05e-87 | 265 |
| MS.gene49120.t1 | AT5G50130 | 46.624 | 311 | 162 | 3 | 8 | 314 | 13 | 323 | 2.86e-85 | 260 |
| MS.gene49120.t1 | AT5G50130 | 46.454 | 282 | 150 | 1 | 34 | 314 | 8 | 289 | 5.16e-79 | 243 |
| MS.gene49120.t1 | AT5G50130 | 46.643 | 283 | 149 | 2 | 34 | 314 | 8 | 290 | 1.70e-78 | 241 |
| MS.gene49120.t1 | AT1G64590 | 46.154 | 299 | 158 | 2 | 17 | 312 | 22 | 320 | 2.78e-76 | 237 |
| MS.gene49120.t1 | AT4G24050 | 45.455 | 264 | 139 | 3 | 8 | 268 | 13 | 274 | 8.85e-71 | 221 |
| MS.gene49120.t1 | AT5G50130 | 45.660 | 265 | 140 | 3 | 8 | 268 | 13 | 277 | 1.82e-69 | 219 |
| MS.gene49120.t1 | AT5G50130 | 45.865 | 266 | 139 | 4 | 8 | 268 | 13 | 278 | 8.96e-69 | 217 |
| MS.gene49120.t1 | AT5G50130 | 49.145 | 234 | 117 | 1 | 8 | 239 | 13 | 246 | 1.96e-68 | 214 |
| MS.gene49120.t1 | AT5G50130 | 49.362 | 235 | 116 | 2 | 8 | 239 | 13 | 247 | 1.00e-67 | 213 |
| MS.gene49120.t1 | AT5G50130 | 45.570 | 237 | 127 | 2 | 34 | 268 | 8 | 244 | 1.18e-62 | 201 |
| MS.gene49120.t1 | AT5G50130 | 45.798 | 238 | 126 | 3 | 34 | 268 | 8 | 245 | 5.39e-62 | 199 |
| MS.gene49120.t1 | AT4G27760 | 32.039 | 309 | 169 | 9 | 30 | 312 | 58 | 351 | 6.73e-28 | 111 |
| MS.gene49120.t1 | AT5G54190 | 30.225 | 311 | 182 | 10 | 33 | 312 | 96 | 402 | 1.99e-27 | 110 |
| MS.gene49120.t1 | AT4G09750 | 27.632 | 304 | 194 | 7 | 4 | 302 | 20 | 302 | 2.27e-26 | 106 |
| MS.gene49120.t1 | AT1G03630 | 33.758 | 314 | 170 | 12 | 31 | 312 | 89 | 396 | 8.60e-26 | 106 |
| MS.gene49120.t1 | AT1G03630 | 33.758 | 314 | 170 | 12 | 31 | 312 | 91 | 398 | 8.97e-26 | 106 |
| MS.gene49120.t1 | AT5G04070 | 29.352 | 293 | 185 | 8 | 32 | 308 | 61 | 347 | 1.44e-23 | 99.8 |
| MS.gene49120.t1 | AT4G27440 | 30.868 | 311 | 180 | 10 | 33 | 312 | 92 | 398 | 1.63e-23 | 100 |
| MS.gene49120.t1 | AT4G27440 | 30.868 | 311 | 180 | 10 | 33 | 312 | 92 | 398 | 1.63e-23 | 100 |
| MS.gene49120.t1 | AT5G53100 | 32.026 | 306 | 176 | 11 | 30 | 312 | 45 | 341 | 1.06e-22 | 97.4 |
| MS.gene49120.t1 | AT5G53090 | 29.900 | 301 | 186 | 6 | 30 | 312 | 57 | 350 | 2.41e-22 | 96.3 |
| MS.gene49120.t1 | AT5G15940 | 27.907 | 301 | 193 | 10 | 32 | 314 | 63 | 357 | 9.66e-21 | 91.7 |
| MS.gene49120.t1 | AT5G15940 | 27.907 | 301 | 193 | 10 | 32 | 314 | 63 | 357 | 9.66e-21 | 91.7 |
| MS.gene49120.t1 | AT5G15940 | 27.907 | 301 | 193 | 10 | 32 | 314 | 62 | 356 | 1.05e-20 | 91.7 |
| MS.gene49120.t1 | AT5G54190 | 27.719 | 285 | 172 | 9 | 58 | 312 | 1 | 281 | 1.27e-19 | 87.4 |
| MS.gene49120.t1 | AT5G15940 | 27.477 | 222 | 144 | 5 | 32 | 240 | 63 | 280 | 2.99e-15 | 75.5 |
| MS.gene49120.t1 | AT5G51030 | 26.712 | 292 | 153 | 13 | 32 | 285 | 40 | 308 | 8.71e-12 | 65.5 |
| MS.gene49120.t1 | AT5G61830 | 33.333 | 144 | 83 | 5 | 32 | 170 | 39 | 174 | 3.54e-11 | 63.5 |
| MS.gene49120.t1 | AT5G61830 | 33.333 | 144 | 83 | 5 | 32 | 170 | 39 | 174 | 3.54e-11 | 63.5 |
Find 66 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCAGGAAAGGGGTATC+TGG | 0.244871 | 1.3:-68971939 | MS.gene49120:CDS |
| TTGGGATTTCAGCATGAATT+TGG | 0.287522 | 1.3:-68966715 | MS.gene49120:CDS |
| CTCTTTAAGTATTGCTTCTC+TGG | 0.294320 | 1.3:+68971440 | None:intergenic |
| ACATGGTGTCCATGTGATTA+TGG | 0.307075 | 1.3:-68971493 | MS.gene49120:CDS |
| GATTATGGCTGTTAGAAATA+AGG | 0.314737 | 1.3:-68971478 | MS.gene49120:CDS |
| CTGATTTGGCTAAGAAACTT+TGG | 0.324819 | 1.3:-68966734 | MS.gene49120:CDS |
| ACATGGGAGGGATGCTGATT+TGG | 0.329130 | 1.3:-68966748 | MS.gene49120:CDS |
| TTGTATACAGTTACAGCAAA+TGG | 0.345777 | 1.3:-68968905 | MS.gene49120:intron |
| CACTAACTCCCTTCACTTGT+GGG | 0.347652 | 1.3:+68966811 | None:intergenic |
| CCTCCCATGTGAACTTGATT+TGG | 0.351212 | 1.3:+68966761 | None:intergenic |
| CCAACTTACAAAACATTTCA+AGG | 0.364591 | 1.3:-68968838 | MS.gene49120:intron |
| GGAGTTAGATCTCAGTTCAT+TGG | 0.382633 | 1.3:-68971391 | MS.gene49120:CDS |
| ACAGGAGCATCCAGCGGTAT+TGG | 0.387681 | 1.3:-68971543 | MS.gene49120:intron |
| CTGTAGTTCGATGTTGTCAT+TGG | 0.387818 | 1.3:+68970635 | None:intergenic |
| ACGCGTGTTCTTGCTTTACA+TGG | 0.389431 | 1.3:-68971510 | MS.gene49120:CDS |
| TGATTTGGCTAAGAAACTTT+GGG | 0.394881 | 1.3:-68966733 | MS.gene49120:CDS |
| CCACTAACTCCCTTCACTTG+TGG | 0.412556 | 1.3:+68966810 | None:intergenic |
| TGTATACAGTTACAGCAAAT+GGG | 0.425806 | 1.3:-68968904 | MS.gene49120:intron |
| TACAGCAAATGGGGTGCATA+TGG | 0.428773 | 1.3:-68968894 | MS.gene49120:CDS |
| GCATCCGAATTTAATTCCTC+TGG | 0.439216 | 1.3:-68971351 | MS.gene49120:CDS |
| CCACAAGTGAAGGGAGTTAG+TGG | 0.447541 | 1.3:-68966810 | MS.gene49120:CDS |
| TCTTACATCAAGATGTTCAA+TGG | 0.449454 | 1.3:+68971324 | None:intergenic |
| TTACATCTTGATCAGGATGA+TGG | 0.452961 | 1.3:-68968221 | MS.gene49120:intron |
| AAGACCAGAGGAATTAAATT+CGG | 0.474997 | 1.3:+68971347 | None:intergenic |
| AGATTGGTGGCAATGCCTCC+TGG | 0.478554 | 1.3:+68968170 | None:intergenic |
| ACAAAATTAATGAACAATCA+AGG | 0.483699 | 1.3:-68970047 | MS.gene49120:intron |
| TGTGGCCATTCAGCAGGAAA+GGG | 0.484540 | 1.3:-68971947 | MS.gene49120:CDS |
| ACTCATGGAATTGATGCAAC+TGG | 0.489575 | 1.3:-68971885 | MS.gene49120:CDS |
| TGCAAATTTGTGAGCTTCTG+AGG | 0.489977 | 1.3:+68970092 | None:intergenic |
| TCAGCAGGAAAGGGGTATCT+GGG | 0.495041 | 1.3:-68971938 | MS.gene49120:CDS |
| CGTTGATTGCGCTGTTATGA+CGG | 0.496487 | 1.3:+68968144 | None:intergenic |
| GCATCATGTGGCCATTCAGC+AGG | 0.496748 | 1.3:-68971953 | None:intergenic |
| CACAAATTTGCATATTCTGA+AGG | 0.498869 | 1.3:-68970081 | MS.gene49120:CDS |
| TTGTCATTGGAAAGCATGAA+AGG | 0.519351 | 1.3:+68970648 | None:intergenic |
| GATACCCCTTTCCTGCTGAA+TGG | 0.522828 | 1.3:+68971942 | None:intergenic |
| ATGTGGCCATTCAGCAGGAA+AGG | 0.530864 | 1.3:-68971948 | MS.gene49120:CDS |
| ATGTTTCACAAATACCTAAG+TGG | 0.533317 | 1.3:+68970601 | None:intergenic |
| ATTGCAAATTCTCTTCATCC+AGG | 0.533827 | 1.3:-68968188 | MS.gene49120:CDS |
| GGCCTCACTGCTATTGTCAC+TGG | 0.537638 | 1.3:-68971864 | MS.gene49120:intron |
| CAGTTTGCGACAAACCACTT+AGG | 0.544627 | 1.3:-68970615 | MS.gene49120:intron |
| AGCATTGCACCCACAAGTGA+AGG | 0.549189 | 1.3:-68966820 | MS.gene49120:CDS |
| AGTCTCAACTCCAATACCGC+TGG | 0.551492 | 1.3:+68971533 | None:intergenic |
| GCTGTTATGACGGTAAAGAT+TGG | 0.556805 | 1.3:+68968154 | None:intergenic |
| CAAATCAAGTTCACATGGGA+GGG | 0.557158 | 1.3:-68966760 | MS.gene49120:CDS |
| GTAATTGGAAGAAACAATGC+AGG | 0.558972 | 1.3:-68970684 | MS.gene49120:intron |
| TTTCAGCATGAATTTGGTCA+AGG | 0.566003 | 1.3:-68966709 | MS.gene49120:CDS |
| AAGAAACAATGCAGGAGTCA+TGG | 0.567107 | 1.3:-68970676 | MS.gene49120:CDS |
| ACAGCTGAAGAAGTTACTCA+TGG | 0.574245 | 1.3:-68971900 | MS.gene49120:CDS |
| TGCAACAGGTATAGTAAATG+TGG | 0.575815 | 1.3:-68967074 | MS.gene49120:intron |
| TGTCATTGGAAAGCATGAAA+GGG | 0.579731 | 1.3:+68970649 | None:intergenic |
| CGTCATAACAGCGCAATCAA+CGG | 0.595268 | 1.3:-68968143 | MS.gene49120:intron |
| GCTAGTGAAAGTAAGACTGA+AGG | 0.596766 | 1.3:-68970132 | MS.gene49120:CDS |
| GTTATGACGGTAAAGATTGG+TGG | 0.600769 | 1.3:+68968157 | None:intergenic |
| GTGGCCAAATCAAGTTCACA+TGG | 0.609154 | 1.3:-68966765 | MS.gene49120:CDS |
| ACAGGTATAGTAAATGTGGT+TGG | 0.612281 | 1.3:-68967070 | MS.gene49120:intron |
| CCAAATCAAGTTCACATGGG+AGG | 0.616347 | 1.3:-68966761 | MS.gene49120:CDS |
| TTCTAACAGCCATAATCACA+TGG | 0.621462 | 1.3:+68971484 | None:intergenic |
| GCATTGCACCCACAAGTGAA+GGG | 0.624705 | 1.3:-68966819 | MS.gene49120:CDS |
| CAATGCTACATAGCATGTTG+TGG | 0.627328 | 1.3:+68966836 | None:intergenic |
| GTATACAGTTACAGCAAATG+GGG | 0.639935 | 1.3:-68968903 | MS.gene49120:intron |
| GTGGCCATTCAGCAGGAAAG+GGG | 0.656505 | 1.3:-68971946 | MS.gene49120:CDS |
| GATGTTCAATGGAAGACCAG+AGG | 0.666537 | 1.3:+68971335 | None:intergenic |
| GCAAATTCTCTTCATCCAGG+AGG | 0.683556 | 1.3:-68968185 | MS.gene49120:CDS |
| ATGGTAACAGGAGCATCCAG+CGG | 0.703218 | 1.3:-68971549 | MS.gene49120:intron |
| TGGCCAAATCAAGTTCACAT+GGG | 0.718809 | 1.3:-68966764 | MS.gene49120:CDS |
| TACCAGTGACAATAGCAGTG+AGG | 0.758013 | 1.3:+68971862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAAATAAACAAAA+AGG | + | chr1.3:68966839-68966858 | None:intergenic | 10.0% |
| !! | AAATGAAAAATAAACAAAAA+GGG | + | chr1.3:68966838-68966857 | None:intergenic | 10.0% |
| !! | ATCTAATAATATTATGATTA+AGG | - | chr1.3:68970807-68970826 | MS.gene49120:intron | 10.0% |
| !! | CAAAATAAATAGTAAATAAA+AGG | + | chr1.3:68967820-68967839 | None:intergenic | 10.0% |
| !! | TTAATCATAATATTATTAGA+TGG | + | chr1.3:68970808-68970827 | None:intergenic | 10.0% |
| !!! | AAAAATCATTTTAATTTTGA+TGG | + | chr1.3:68967582-68967601 | None:intergenic | 10.0% |
| !!! | AAAATCATTTTAATTTTGAT+GGG | + | chr1.3:68967581-68967600 | None:intergenic | 10.0% |
| !! | AATAATAAATATCATGTAAG+TGG | + | chr1.3:68969498-68969517 | None:intergenic | 15.0% |
| !! | AATAATATTATGATTAAGGT+TGG | - | chr1.3:68970811-68970830 | MS.gene49120:intron | 15.0% |
| !! | ACATGATATTTATTATTGTT+TGG | - | chr1.3:68969501-68969520 | MS.gene49120:intron | 15.0% |
| !! | ATAAAGTAATAATGTATGAA+TGG | + | chr1.3:68971363-68971382 | None:intergenic | 15.0% |
| !! | ATTATAGTATTATACTATTC+AGG | - | chr1.3:68970534-68970553 | MS.gene49120:intron | 15.0% |
| !! | TAAATCAAAGATAATTAATG+TGG | + | chr1.3:68970396-68970415 | None:intergenic | 15.0% |
| !! | TATAGATTAAAAACGAAATT+TGG | + | chr1.3:68967505-68967524 | None:intergenic | 15.0% |
| !!! | AAACTTCAATTTTATTTTCT+TGG | - | chr1.3:68968724-68968743 | MS.gene49120:intron | 15.0% |
| !!! | AACTTCAATTTTATTTTCTT+GGG | - | chr1.3:68968725-68968744 | MS.gene49120:intron | 15.0% |
| !!! | CTAAACATTTTTAAAGATAA+TGG | - | chr1.3:68967751-68967770 | MS.gene49120:intron | 15.0% |
| !!! | GACTTTTTTTTTTTTTATCA+AGG | - | chr1.3:68970865-68970884 | MS.gene49120:intron | 15.0% |
| !!! | TTTAATTTTAAGTTTCAAAC+AGG | - | chr1.3:68967413-68967432 | MS.gene49120:intron | 15.0% |
| !!! | TTTATTGTTGTTATACATTA+TGG | + | chr1.3:68971291-68971310 | None:intergenic | 15.0% |
| !! | AAAAACTACTATTGAACAAA+AGG | + | chr1.3:68966872-68966891 | None:intergenic | 20.0% |
| !! | AAAACTACTATTGAACAAAA+GGG | + | chr1.3:68966871-68966890 | None:intergenic | 20.0% |
| !! | ACAAAATTAATGAACAATCA+AGG | - | chr1.3:68968602-68968621 | MS.gene49120:intron | 20.0% |
| !! | ATCATAATATTATTAGATGG+TGG | + | chr1.3:68970805-68970824 | None:intergenic | 20.0% |
| !! | CAAATAAAATAGTTAGACTT+AGG | + | chr1.3:68971039-68971058 | None:intergenic | 20.0% |
| !! | GCCTAAATAAAATTCATAAT+GGG | + | chr1.3:68967368-68967387 | None:intergenic | 20.0% |
| !! | GTCAAAAAAAATAAAACGTA+TGG | + | chr1.3:68971138-68971157 | None:intergenic | 20.0% |
| !! | TCAGACATAAATAAATCTAA+TGG | + | chr1.3:68968258-68968277 | None:intergenic | 20.0% |
| !! | TCATAATATTATTAGATGGT+GGG | + | chr1.3:68970804-68970823 | None:intergenic | 20.0% |
| !! | TGCCTAAATAAAATTCATAA+TGG | + | chr1.3:68967369-68967388 | None:intergenic | 20.0% |
| !! | TTTATGTAATATAATTCCAC+AGG | - | chr1.3:68968448-68968467 | MS.gene49120:intron | 20.0% |
| !! | TTTCTTATACTATTAGTGAA+GGG | - | chr1.3:68971095-68971114 | MS.gene49120:intron | 20.0% |
| !!! | ACTTGTCGTAAATTTTTTTT+TGG | - | chr1.3:68970685-68970704 | MS.gene49120:intron | 20.0% |
| !!! | AGTTGATGTTTAACAATATT+TGG | + | chr1.3:68970195-68970214 | None:intergenic | 20.0% |
| !!! | ATACATTGATGATTTTGAAT+TGG | - | chr1.3:68971426-68971445 | MS.gene49120:CDS | 20.0% |
| !!! | ATATTTTTCAGACAATAATG+TGG | - | chr1.3:68971865-68971884 | MS.gene49120:CDS | 20.0% |
| !!! | ATTATTACTGGAGTTTTATT+TGG | - | chr1.3:68967060-68967079 | MS.gene49120:CDS | 20.0% |
| !!! | GAAAAAGCAAACAAATTTTA+TGG | + | chr1.3:68971498-68971517 | None:intergenic | 20.0% |
| !!! | GAAAATTTTAAAAATGGAAG+AGG | - | chr1.3:68968664-68968683 | MS.gene49120:intron | 20.0% |
| !!! | GATGAAGAATATATTTGTTA+AGG | + | chr1.3:68969111-68969130 | None:intergenic | 20.0% |
| !!! | GTTCATTAATTTTGTCAAAA+CGG | + | chr1.3:68968597-68968616 | None:intergenic | 20.0% |
| !!! | TACATTGATGATTTTGAATT+GGG | - | chr1.3:68971427-68971446 | MS.gene49120:CDS | 20.0% |
| !!! | TCCCATTATGAATTTTATTT+AGG | - | chr1.3:68967364-68967383 | MS.gene49120:intron | 20.0% |
| !!! | TGAATTTTTCAATATTCAGA+GGG | + | chr1.3:68970845-68970864 | None:intergenic | 20.0% |
| !!! | TGTGCTGAAAATTTTAAAAA+TGG | - | chr1.3:68968658-68968677 | MS.gene49120:intron | 20.0% |
| !!! | TGTTGATTTTATAAAACGTA+CGG | + | chr1.3:68971167-68971186 | None:intergenic | 20.0% |
| ! | AACTGTTTCAATTGTAAACA+AGG | + | chr1.3:68969624-68969643 | None:intergenic | 25.0% |
| ! | AATAAATATCATGTAAGTGG+TGG | + | chr1.3:68969495-68969514 | None:intergenic | 25.0% |
| ! | ACCTACTATTTATAAATGTG+AGG | - | chr1.3:68971649-68971668 | MS.gene49120:intron | 25.0% |
| ! | AGCTAAGAAAAGTGAAATAT+CGG | + | chr1.3:68971743-68971762 | None:intergenic | 25.0% |
| ! | AGTAATAATGTATGAATGGT+TGG | + | chr1.3:68971359-68971378 | None:intergenic | 25.0% |
| ! | AGTAATTTATAGCACTTGAT+TGG | - | chr1.3:68971252-68971271 | MS.gene49120:intron | 25.0% |
| ! | ATTCATCAAATTCATGAAAC+TGG | - | chr1.3:68967028-68967047 | MS.gene49120:intron | 25.0% |
| ! | CAACTTTAATAGAAATCAGA+AGG | + | chr1.3:68967843-68967862 | None:intergenic | 25.0% |
| ! | CAATATCATGTACCAAATAT+AGG | + | chr1.3:68970774-68970793 | None:intergenic | 25.0% |
| ! | CAATTACAAATAAACACATC+AGG | + | chr1.3:68967952-68967971 | None:intergenic | 25.0% |
| ! | CATTCATGAATATAACATAG+TGG | - | chr1.3:68969376-68969395 | MS.gene49120:intron | 25.0% |
| ! | CCTACTATTTATAAATGTGA+GGG | - | chr1.3:68971650-68971669 | MS.gene49120:intron | 25.0% |
| ! | CTACTATTTATAAATGTGAG+GGG | - | chr1.3:68971651-68971670 | MS.gene49120:intron | 25.0% |
| ! | CTGATGTGTTTATTTGTAAT+TGG | - | chr1.3:68967950-68967969 | MS.gene49120:intron | 25.0% |
| ! | CTGTTATAACTTATATAGCT+GGG | - | chr1.3:68968409-68968428 | MS.gene49120:intron | 25.0% |
| ! | CTTTCTTATACTATTAGTGA+AGG | - | chr1.3:68971094-68971113 | MS.gene49120:intron | 25.0% |
| ! | GGAAGCAAACATAATTAAAT+TGG | + | chr1.3:68969723-68969742 | None:intergenic | 25.0% |
| ! | GTAATAATGTATGAATGGTT+GGG | + | chr1.3:68971358-68971377 | None:intergenic | 25.0% |
| ! | GTGTGAAAGAGTAAATATAA+CGG | - | chr1.3:68968701-68968720 | MS.gene49120:intron | 25.0% |
| ! | TAATAATGTATGAATGGTTG+GGG | + | chr1.3:68971357-68971376 | None:intergenic | 25.0% |
| ! | TAATGAACAATCAAGGTAAT+AGG | - | chr1.3:68968609-68968628 | MS.gene49120:intron | 25.0% |
| ! | TATCTTAATCTCCTATCAAT+TGG | - | chr1.3:68970137-68970156 | MS.gene49120:CDS | 25.0% |
| ! | TCTGTTATAACTTATATAGC+TGG | - | chr1.3:68968408-68968427 | MS.gene49120:intron | 25.0% |
| ! | TGGCTATGATTAATTATTAC+TGG | - | chr1.3:68967048-68967067 | MS.gene49120:CDS | 25.0% |
| ! | TTAAAAACGTCAACAATGTT+TGG | - | chr1.3:68967479-68967498 | MS.gene49120:intron | 25.0% |
| ! | TTAAAGATCATGAATAAGAC+TGG | + | chr1.3:68967904-68967923 | None:intergenic | 25.0% |
| ! | TTACAAAACATTTCAAGGTA+TGG | - | chr1.3:68969816-68969835 | MS.gene49120:intron | 25.0% |
| ! | TTCTATGTTGCTAAGTTATT+TGG | - | chr1.3:68966897-68966916 | MS.gene49120:intron | 25.0% |
| ! | TTGTTAAACATCAACTTTAG+TGG | - | chr1.3:68970199-68970218 | MS.gene49120:intron | 25.0% |
| ! | TTGTTTACAATTGAAACAGT+TGG | - | chr1.3:68969623-68969642 | MS.gene49120:intron | 25.0% |
| ! | TTTAAAAGAGACATTTCAAG+AGG | + | chr1.3:68969469-68969488 | None:intergenic | 25.0% |
| !! | AATTGATTTCCTGTTGAAAT+TGG | - | chr1.3:68966995-68967014 | MS.gene49120:intron | 25.0% |
| !! | ACAGAATGTTTCTATGATTA+TGG | + | chr1.3:68970337-68970356 | None:intergenic | 25.0% |
| !! | GTCTTATTCATGATCTTTAA+TGG | - | chr1.3:68967904-68967923 | MS.gene49120:intron | 25.0% |
| !! | GTTTTACATCAAAGATTCAT+GGG | + | chr1.3:68969006-68969025 | None:intergenic | 25.0% |
| !! | TAGGTGTTTTATCCTATATT+TGG | - | chr1.3:68970759-68970778 | MS.gene49120:intron | 25.0% |
| !! | TGTTTTACATCAAAGATTCA+TGG | + | chr1.3:68969007-68969026 | None:intergenic | 25.0% |
| !! | TTATTTGTTACATCTTGATC+AGG | - | chr1.3:68970421-68970440 | MS.gene49120:intron | 25.0% |
| !!! | AATTTTTCAATATTCAGAGG+GGG | + | chr1.3:68970843-68970862 | None:intergenic | 25.0% |
| !!! | ATATGTACTTTTTAGTTTGC+TGG | - | chr1.3:68968807-68968826 | MS.gene49120:intron | 25.0% |
| !!! | CAGGAAATCAATTTTAGTTT+TGG | + | chr1.3:68966988-68967007 | None:intergenic | 25.0% |
| !!! | CTGAATTTTTCAATATTCAG+AGG | + | chr1.3:68970846-68970865 | None:intergenic | 25.0% |
| !!! | CTTTTAAGCTTTAACATCAT+CGG | - | chr1.3:68970921-68970940 | MS.gene49120:intron | 25.0% |
| !!! | GAATTTTTCAATATTCAGAG+GGG | + | chr1.3:68970844-68970863 | None:intergenic | 25.0% |
| !!! | TATGTACTTTTTAGTTTGCT+GGG | - | chr1.3:68968808-68968827 | MS.gene49120:intron | 25.0% |
| !!! | TGTCGTAAATTTTTTTTTGG+TGG | - | chr1.3:68970688-68970707 | MS.gene49120:intron | 25.0% |
| AAAACTAGTCACCAATTGAT+AGG | + | chr1.3:68970151-68970170 | None:intergenic | 30.0% | |
| AAGACCAGAGGAATTAAATT+CGG | + | chr1.3:68967305-68967324 | None:intergenic | 30.0% | |
| ACACAGAGATTTATGTGAAT+TGG | - | chr1.3:68969058-68969077 | MS.gene49120:intron | 30.0% | |
| ACTTTCTCCTATCTAAATGT+AGG | - | chr1.3:68971784-68971803 | MS.gene49120:intron | 30.0% | |
| AGAAAGATAGTGTCACATAA+CGG | + | chr1.3:68970623-68970642 | None:intergenic | 30.0% | |
| AGGGTAAGAAAGAGTAATAA+AGG | + | chr1.3:68966819-68966838 | None:intergenic | 30.0% | |
| AGTGATATACATATTGAGCT+CGG | + | chr1.3:68969160-68969179 | None:intergenic | 30.0% | |
| ATCAGCAAAAATTGATGTCA+TGG | - | chr1.3:68967237-68967256 | MS.gene49120:intron | 30.0% | |
| ATGTTTCACAAATACCTAAG+TGG | + | chr1.3:68968051-68968070 | None:intergenic | 30.0% | |
| ATTATACAAGTCCTTTGATG+TGG | - | chr1.3:68970567-68970586 | MS.gene49120:intron | 30.0% | |
| CACAAATTTGCATATTCTGA+AGG | - | chr1.3:68968568-68968587 | MS.gene49120:intron | 30.0% | |
| CATAAAAGACTAACTTACAG+TGG | + | chr1.3:68967458-68967477 | None:intergenic | 30.0% | |
| CCAACTTACAAAACATTTCA+AGG | - | chr1.3:68969811-68969830 | MS.gene49120:intron | 30.0% | |
| CCCTCACATTTATAAATAGT+AGG | + | chr1.3:68971653-68971672 | None:intergenic | 30.0% | |
| CGATGATGTTAAAGCTTAAA+AGG | + | chr1.3:68970923-68970942 | None:intergenic | 30.0% | |
| CTCGATAATTTATAACCGTA+TGG | + | chr1.3:68968349-68968368 | None:intergenic | 30.0% | |
| CTTTCTCCTATCTAAATGTA+GGG | - | chr1.3:68971785-68971804 | MS.gene49120:intron | 30.0% | |
| GATTATGGCTGTTAGAAATA+AGG | - | chr1.3:68967171-68967190 | MS.gene49120:intron | 30.0% | |
| GGGTCATGTCAAATAAATAT+CGG | - | chr1.3:68971671-68971690 | MS.gene49120:intron | 30.0% | |
| GTTATACATTATGGATGAGT+TGG | + | chr1.3:68971282-68971301 | None:intergenic | 30.0% | |
| TAATACCTTGTAGTAGCTTT+AGG | - | chr1.3:68966923-68966942 | MS.gene49120:intron | 30.0% | |
| TATTTAGGCAAAACTGCATT+GGG | - | chr1.3:68967379-68967398 | MS.gene49120:intron | 30.0% | |
| TATTTGGTATGTGGATATGA+TGG | - | chr1.3:68967076-68967095 | MS.gene49120:intron | 30.0% | |
| TCAAGTCATAGTAGTTTCTA+GGG | - | chr1.3:68968224-68968243 | MS.gene49120:intron | 30.0% | |
| TCTCTCATTATTTCAACTTC+TGG | - | chr1.3:68969916-68969935 | MS.gene49120:intron | 30.0% | |
| TCTTACATCAAGATGTTCAA+TGG | + | chr1.3:68967328-68967347 | None:intergenic | 30.0% | |
| TGTATACAGTTACAGCAAAT+GGG | - | chr1.3:68969745-68969764 | MS.gene49120:intron | 30.0% | |
| TGTTTACTTCTACTATGTAG+TGG | - | chr1.3:68969841-68969860 | MS.gene49120:intron | 30.0% | |
| TTATGTGACACTATCTTTCT+TGG | - | chr1.3:68970623-68970642 | MS.gene49120:CDS | 30.0% | |
| TTATTTAGGCAAAACTGCAT+TGG | - | chr1.3:68967378-68967397 | MS.gene49120:intron | 30.0% | |
| TTGTATACAGTTACAGCAAA+TGG | - | chr1.3:68969744-68969763 | MS.gene49120:intron | 30.0% | |
| TTTCTCCTATCTAAATGTAG+GGG | - | chr1.3:68971786-68971805 | MS.gene49120:intron | 30.0% | |
| TTTCTGTAGTATTTGTCAAC+TGG | - | chr1.3:68969685-68969704 | MS.gene49120:intron | 30.0% | |
| ! | AAATCTGCATATTTCTACTG+TGG | - | chr1.3:68969989-68970008 | MS.gene49120:intron | 30.0% |
| ! | ATGACATCAATTTTTGCTGA+TGG | + | chr1.3:68967238-68967257 | None:intergenic | 30.0% |
| ! | CCTTGAAATGTTTTGTAAGT+TGG | + | chr1.3:68969814-68969833 | None:intergenic | 30.0% |
| ! | GCAAACAAATTTTATGGACA+CGG | + | chr1.3:68971492-68971511 | None:intergenic | 30.0% |
| ! | GTTAGACTTAGGAGTATAAT+AGG | + | chr1.3:68971028-68971047 | None:intergenic | 30.0% |
| ! | TCTCTTGACAAATCTTTTGT+TGG | - | chr1.3:68968477-68968496 | MS.gene49120:intron | 30.0% |
| ! | TGACAAAGTATCTAACTTCT+GGG | + | chr1.3:68971319-68971338 | None:intergenic | 30.0% |
| ! | TGATGTTTGATTTATGCAAC+AGG | - | chr1.3:68971561-68971580 | MS.gene49120:intron | 30.0% |
| ! | TGATTTGGCTAAGAAACTTT+GGG | - | chr1.3:68971916-68971935 | MS.gene49120:CDS | 30.0% |
| ! | TTGACAAAGTATCTAACTTC+TGG | + | chr1.3:68971320-68971339 | None:intergenic | 30.0% |
| ! | TTTGCTGTAACTGTATACAA+AGG | + | chr1.3:68969744-68969763 | None:intergenic | 30.0% |
| !! | ATTGATGATTTTGAATTGGG+TGG | - | chr1.3:68971430-68971449 | MS.gene49120:CDS | 30.0% |
| !! | ATTTTTCAATATTCAGAGGG+GGG | + | chr1.3:68970842-68970861 | None:intergenic | 30.0% |
| !! | CTATTGGTTTGATTCTGAAA+AGG | - | chr1.3:68968760-68968779 | MS.gene49120:intron | 30.0% |
| !! | GATTTTGCTTTTAGATCAGA+AGG | - | chr1.3:68968884-68968903 | MS.gene49120:CDS | 30.0% |
| !! | TAATGATTTTGACATACCTG+TGG | + | chr1.3:68971627-68971646 | None:intergenic | 30.0% |
| !!! | TCTTGGTTGCTTCATTTTTT+TGG | - | chr1.3:68970640-68970659 | MS.gene49120:CDS | 30.0% |
| AAAAGCAAAATCGTATCAGC+AGG | + | chr1.3:68968876-68968895 | None:intergenic | 35.0% | |
| AATGTGGCAAAACCATCAAA+AGG | + | chr1.3:68970380-68970399 | None:intergenic | 35.0% | |
| ACAGGTATAGTAAATGTGGT+TGG | - | chr1.3:68971579-68971598 | MS.gene49120:intron | 35.0% | |
| AGATAGCAGATGCTGTAAAA+AGG | + | chr1.3:68970122-68970141 | None:intergenic | 35.0% | |
| AGTCAAGCTACTTGAAAATG+TGG | + | chr1.3:68969413-68969432 | None:intergenic | 35.0% | |
| ATAAAAGGCAAAACTGCATC+AGG | + | chr1.3:68967805-68967824 | None:intergenic | 35.0% | |
| ATCTTTCCGTGAAAATTGTG+AGG | - | chr1.3:68968177-68968196 | MS.gene49120:CDS | 35.0% | |
| ATGTAAGAAGAGAAGTGACA+TGG | - | chr1.3:68967340-68967359 | MS.gene49120:intron | 35.0% | |
| ATGTGGCAAAACCATCAAAA+GGG | + | chr1.3:68970379-68970398 | None:intergenic | 35.0% | |
| ATTGCAAATTCTCTTCATCC+AGG | - | chr1.3:68970461-68970480 | MS.gene49120:intron | 35.0% | |
| ATTTCTTGCAACTCTTGAGT+GGG | + | chr1.3:68969193-68969212 | None:intergenic | 35.0% | |
| GCTAAAGTGACTAATACTGA+AGG | - | chr1.3:68971221-68971240 | MS.gene49120:intron | 35.0% | |
| GTAATTGGAAGAAACAATGC+AGG | - | chr1.3:68967965-68967984 | MS.gene49120:intron | 35.0% | |
| GTATACAGTTACAGCAAATG+GGG | - | chr1.3:68969746-68969765 | MS.gene49120:intron | 35.0% | |
| GTCAAGCTACTTGAAAATGT+GGG | + | chr1.3:68969412-68969431 | None:intergenic | 35.0% | |
| GTCAAGTCATAGTAGTTTCT+AGG | - | chr1.3:68968223-68968242 | MS.gene49120:intron | 35.0% | |
| GTTGCATGAAGAATTAAGAG+TGG | - | chr1.3:68969655-68969674 | MS.gene49120:intron | 35.0% | |
| TAAAAGGCAAAACTGCATCA+GGG | + | chr1.3:68967804-68967823 | None:intergenic | 35.0% | |
| TATGATTATGGTTGCCCAAA+GGG | + | chr1.3:68970325-68970344 | None:intergenic | 35.0% | |
| TCTTTCCGTGAAAATTGTGA+GGG | - | chr1.3:68968178-68968197 | MS.gene49120:CDS | 35.0% | |
| TGCAACAGGTATAGTAAATG+TGG | - | chr1.3:68971575-68971594 | MS.gene49120:intron | 35.0% | |
| TGGGCAATCAATGTTACTAT+TGG | - | chr1.3:68968744-68968763 | MS.gene49120:intron | 35.0% | |
| TTACATCTTGATCAGGATGA+TGG | - | chr1.3:68970428-68970447 | MS.gene49120:intron | 35.0% | |
| TTCTAACAGCCATAATCACA+TGG | + | chr1.3:68967168-68967187 | None:intergenic | 35.0% | |
| TTCTCCTATCTAAATGTAGG+GGG | - | chr1.3:68971787-68971806 | MS.gene49120:intron | 35.0% | |
| TTGACTATGCCAATTTCAAC+AGG | + | chr1.3:68967007-68967026 | None:intergenic | 35.0% | |
| TTGGGATTTCAGCATGAATT+TGG | - | chr1.3:68971934-68971953 | MS.gene49120:CDS | 35.0% | |
| TTTCAGCATGAATTTGGTCA+AGG | - | chr1.3:68971940-68971959 | MS.gene49120:CDS | 35.0% | |
| ! | AAAGCTTAAAAGGTTGATCG+CGG | + | chr1.3:68970913-68970932 | None:intergenic | 35.0% |
| ! | CATTTAGAATGCCACATCAA+AGG | + | chr1.3:68970581-68970600 | None:intergenic | 35.0% |
| ! | CTCTTTAAGTATTGCTTCTC+TGG | + | chr1.3:68967212-68967231 | None:intergenic | 35.0% |
| ! | GTAGTACTTGTTGAAAGAAG+AGG | - | chr1.3:68969570-68969589 | MS.gene49120:intron | 35.0% |
| ! | GTGTGATCATTTTATGTGTG+AGG | + | chr1.3:68969241-68969260 | None:intergenic | 35.0% |
| ! | TATTTGTTAAGGTGCTTCCA+TGG | + | chr1.3:68969100-68969119 | None:intergenic | 35.0% |
| ! | TGTCATTGGAAAGCATGAAA+GGG | + | chr1.3:68968003-68968022 | None:intergenic | 35.0% |
| ! | TTGTCATTGGAAAGCATGAA+AGG | + | chr1.3:68968004-68968023 | None:intergenic | 35.0% |
| ! | TTTGAATTGGGTGGTTTTTC+TGG | - | chr1.3:68971439-68971458 | MS.gene49120:CDS | 35.0% |
| !! | CTGATTTGGCTAAGAAACTT+TGG | - | chr1.3:68971915-68971934 | MS.gene49120:CDS | 35.0% |
| !! | TTTAGAGTGTTGAACCAAGT+TGG | + | chr1.3:68967736-68967755 | None:intergenic | 35.0% |
| !! | TTTTTCAGAGACCTGAATGA+AGG | + | chr1.3:68970286-68970305 | None:intergenic | 35.0% |
| !!! | CTGGAGTTTTATTTGGTATG+TGG | - | chr1.3:68967067-68967086 | MS.gene49120:CDS | 35.0% |
| AAAAGGCAAAACTGCATCAG+GGG | + | chr1.3:68967803-68967822 | None:intergenic | 40.0% | |
| AACACCTAGAGCAATGTAGA+TGG | + | chr1.3:68970747-68970766 | None:intergenic | 40.0% | |
| AACCTTGATCATGTGAAGAG+TGG | + | chr1.3:68969301-68969320 | None:intergenic | 40.0% | |
| AACTAAAGCCTGTTCCAACT+AGG | + | chr1.3:68970254-68970273 | None:intergenic | 40.0% | |
| AAGAAACAATGCAGGAGTCA+TGG | - | chr1.3:68967973-68967992 | MS.gene49120:intron | 40.0% | |
| ACAGCTGAAGAAGTTACTCA+TGG | - | chr1.3:68966749-68966768 | MS.gene49120:CDS | 40.0% | |
| ACATGGTGTCCATGTGATTA+TGG | - | chr1.3:68967156-68967175 | MS.gene49120:intron | 40.0% | |
| ACTCATGGAATTGATGCAAC+TGG | - | chr1.3:68966764-68966783 | MS.gene49120:CDS | 40.0% | |
| ACTCTTCACATGATCAAGGT+TGG | - | chr1.3:68969300-68969319 | MS.gene49120:intron | 40.0% | |
| AGTGAACTAAGACTCCAACT+TGG | - | chr1.3:68967719-68967738 | MS.gene49120:intron | 40.0% | |
| ATCAAAGATTCATGGGTGTG+TGG | + | chr1.3:68968999-68969018 | None:intergenic | 40.0% | |
| ATCCACTCTTCACATGATCA+AGG | - | chr1.3:68969296-68969315 | MS.gene49120:intron | 40.0% | |
| CAAATCAAGTTCACATGGGA+GGG | - | chr1.3:68971889-68971908 | MS.gene49120:CDS | 40.0% | |
| CAATGCTACATAGCATGTTG+TGG | + | chr1.3:68971816-68971835 | None:intergenic | 40.0% | |
| CATGTGAAGAGTGGATGTAT+TGG | + | chr1.3:68969292-68969311 | None:intergenic | 40.0% | |
| CATTTCTTGCAACTCTTGAG+TGG | + | chr1.3:68969194-68969213 | None:intergenic | 40.0% | |
| CTATGATTATGGTTGCCCAA+AGG | + | chr1.3:68970326-68970345 | None:intergenic | 40.0% | |
| CTCTTCACATGATCAAGGTT+GGG | - | chr1.3:68969301-68969320 | MS.gene49120:intron | 40.0% | |
| CTGTAGTTCGATGTTGTCAT+TGG | + | chr1.3:68968017-68968036 | None:intergenic | 40.0% | |
| GACTGGAACATAGACATTCA+TGG | + | chr1.3:68967887-68967906 | None:intergenic | 40.0% | |
| GCATCCGAATTTAATTCCTC+TGG | - | chr1.3:68967298-68967317 | MS.gene49120:intron | 40.0% | |
| GCTAGTGAAAGTAAGACTGA+AGG | - | chr1.3:68968517-68968536 | MS.gene49120:intron | 40.0% | |
| GCTGTTATGACGGTAAAGAT+TGG | + | chr1.3:68970498-68970517 | None:intergenic | 40.0% | |
| GGAGTTAGATCTCAGTTCAT+TGG | - | chr1.3:68967258-68967277 | MS.gene49120:intron | 40.0% | |
| GGATATGATGGTATGGTAAC+AGG | - | chr1.3:68967088-68967107 | MS.gene49120:intron | 40.0% | |
| GGTATGTGGATATGATGGTA+TGG | - | chr1.3:68967081-68967100 | MS.gene49120:intron | 40.0% | |
| GTTATGACGGTAAAGATTGG+TGG | + | chr1.3:68970495-68970514 | None:intergenic | 40.0% | |
| TCAGACGCAGTTAGAATTGT+TGG | - | chr1.3:68968945-68968964 | MS.gene49120:intron | 40.0% | |
| TCATCCATCTACATTGCTCT+AGG | - | chr1.3:68970740-68970759 | MS.gene49120:intron | 40.0% | |
| TCATCCCGTCCTGTAAATAA+GGG | + | chr1.3:68969350-68969369 | None:intergenic | 40.0% | |
| TCTGCAATGTGAACTGTGAA+TGG | - | chr1.3:68970025-68970044 | MS.gene49120:intron | 40.0% | |
| TCTTCACATGATCAAGGTTG+GGG | - | chr1.3:68969302-68969321 | MS.gene49120:intron | 40.0% | |
| TGCAAATTTGTGAGCTTCTG+AGG | + | chr1.3:68968560-68968579 | None:intergenic | 40.0% | |
| TGGCCAAATCAAGTTCACAT+GGG | - | chr1.3:68971885-68971904 | MS.gene49120:CDS | 40.0% | |
| TGTCAAGAGAAAATGACCTG+TGG | + | chr1.3:68968467-68968486 | None:intergenic | 40.0% | |
| TGTGATGAAAAACGTTCCAC+AGG | - | chr1.3:68971608-68971627 | MS.gene49120:intron | 40.0% | |
| ! | ACGCAAATTTTGCATCCCTT+TGG | - | chr1.3:68970307-68970326 | MS.gene49120:intron | 40.0% |
| ! | CGCAAATTTTGCATCCCTTT+GGG | - | chr1.3:68970308-68970327 | MS.gene49120:intron | 40.0% |
| ! | TAGTAGTTTCTAGGGAGTGA+AGG | - | chr1.3:68968232-68968251 | MS.gene49120:intron | 40.0% |
| ! | TTGGAACAGGCTTTAGTTGT+TGG | - | chr1.3:68970256-68970275 | MS.gene49120:intron | 40.0% |
| ! | TTGTTGGTGTTCCTTCATTC+AGG | - | chr1.3:68970272-68970291 | MS.gene49120:intron | 40.0% |
| !! | ACATTCCTCTCTCTAAGACA+TGG | - | chr1.3:68969263-68969282 | MS.gene49120:intron | 40.0% |
| !! | TGGTTTGTTTGTTTGCACAC+TGG | - | chr1.3:68971459-68971478 | MS.gene49120:CDS | 40.0% |
| !! | TTTAGCCTTGTTGTCAACGA+GGG | - | chr1.3:68967620-68967639 | MS.gene49120:intron | 40.0% |
| !!! | TTTTAGCCTTGTTGTCAACG+AGG | - | chr1.3:68967619-68967638 | MS.gene49120:intron | 40.0% |
| !!! | TTTTAGTTTGCTGGGAGTCT+TGG | - | chr1.3:68968816-68968835 | MS.gene49120:intron | 40.0% |
| AAGCTTGTGAATCACTCCTC+AGG | + | chr1.3:68966949-68966968 | None:intergenic | 45.0% | |
| ACGCGTGTTCTTGCTTTACA+TGG | - | chr1.3:68967139-68967158 | MS.gene49120:intron | 45.0% | |
| CACTAACTCCCTTCACTTGT+GGG | + | chr1.3:68971841-68971860 | None:intergenic | 45.0% | |
| CAGTTTGCGACAAACCACTT+AGG | - | chr1.3:68968034-68968053 | MS.gene49120:intron | 45.0% | |
| CATCCCGTCCTGTAAATAAG+GGG | + | chr1.3:68969349-68969368 | None:intergenic | 45.0% | |
| CCAAATCAAGTTCACATGGG+AGG | - | chr1.3:68971888-68971907 | MS.gene49120:CDS | 45.0% | |
| CCTCCCATGTGAACTTGATT+TGG | + | chr1.3:68971891-68971910 | None:intergenic | 45.0% | |
| CGTCATAACAGCGCAATCAA+CGG | - | chr1.3:68970506-68970525 | MS.gene49120:intron | 45.0% | |
| CTCATCCCGTCCTGTAAATA+AGG | + | chr1.3:68969351-68969370 | None:intergenic | 45.0% | |
| GAATGGTTGGGGAAGAATAG+TGG | + | chr1.3:68971346-68971365 | None:intergenic | 45.0% | |
| GATGTTCAATGGAAGACCAG+AGG | + | chr1.3:68967317-68967336 | None:intergenic | 45.0% | |
| GCAAATTCTCTTCATCCAGG+AGG | - | chr1.3:68970464-68970483 | MS.gene49120:intron | 45.0% | |
| GGCAAAACCATCAAAAGGGA+GGG | + | chr1.3:68970375-68970394 | None:intergenic | 45.0% | |
| GTGGCCAAATCAAGTTCACA+TGG | - | chr1.3:68971884-68971903 | MS.gene49120:CDS | 45.0% | |
| TAAAGCCTGTTCCAACTAGG+TGG | + | chr1.3:68970251-68970270 | None:intergenic | 45.0% | |
| TACAAGAGCAACTCCAGTGT+TGG | + | chr1.3:68969553-68969572 | None:intergenic | 45.0% | |
| TACAGCAAATGGGGTGCATA+TGG | - | chr1.3:68969755-68969774 | MS.gene49120:intron | 45.0% | |
| TACCAGTGACAATAGCAGTG+AGG | + | chr1.3:68966790-68966809 | None:intergenic | 45.0% | |
| TCAGGAAACAACACTGCTAC+TGG | + | chr1.3:68967934-68967953 | None:intergenic | 45.0% | |
| TCAGGCCTAAAGCTACTACA+AGG | + | chr1.3:68966931-68966950 | None:intergenic | 45.0% | |
| TCCGTGAAAATTGTGAGGGT+GGG | - | chr1.3:68968182-68968201 | MS.gene49120:CDS | 45.0% | |
| TCTCAGACTCTCAGTGATCA+CGG | + | chr1.3:68970958-68970977 | None:intergenic | 45.0% | |
| TGGCAAAACCATCAAAAGGG+AGG | + | chr1.3:68970376-68970395 | None:intergenic | 45.0% | |
| TGTTGTCAACGAGGGTCTAA+TGG | - | chr1.3:68967628-68967647 | MS.gene49120:intron | 45.0% | |
| TTAGACCCTCGTTGACAACA+AGG | + | chr1.3:68967628-68967647 | None:intergenic | 45.0% | |
| TTCCGTGAAAATTGTGAGGG+TGG | - | chr1.3:68968181-68968200 | MS.gene49120:CDS | 45.0% | |
| TTCGCAACTAGAACCAACAC+TGG | - | chr1.3:68969537-68969556 | MS.gene49120:intron | 45.0% | |
| ! | AGGTCCCCTTATTTACAGGA+CGG | - | chr1.3:68969342-68969361 | MS.gene49120:intron | 45.0% |
| ! | CGTTGATTGCGCTGTTATGA+CGG | + | chr1.3:68970508-68970527 | None:intergenic | 45.0% |
| ! | GGGATGCTTCAACTTTTCAC+AGG | - | chr1.3:68969322-68969341 | MS.gene49120:intron | 45.0% |
| ! | TAAGGTGCTTCCATGGATGT+AGG | + | chr1.3:68969093-68969112 | None:intergenic | 45.0% |
| ! | TCACAGGTCCCCTTATTTAC+AGG | - | chr1.3:68969338-68969357 | MS.gene49120:intron | 45.0% |
| !! | TTGTAGTAGCTTTAGGCCTG+AGG | - | chr1.3:68966930-68966949 | MS.gene49120:intron | 45.0% |
| !!! | AAGGGGTATCTGGGTTTTCA+TGG | - | chr1.3:68966720-68966739 | MS.gene49120:CDS | 45.0% |
| AACCGTATGGCGTGTGTGTT+TGG | + | chr1.3:68968336-68968355 | None:intergenic | 50.0% | |
| ACTAGGTGGAGTTGGAATGG+AGG | + | chr1.3:68970237-68970256 | None:intergenic | 50.0% | |
| ACTGCGTCTGAGTTGTGCAT+AGG | + | chr1.3:68968936-68968955 | None:intergenic | 50.0% | |
| AGCATTGCACCCACAAGTGA+AGG | - | chr1.3:68971829-68971848 | MS.gene49120:intron | 50.0% | |
| AGTCTCAACTCCAATACCGC+TGG | + | chr1.3:68967119-68967138 | None:intergenic | 50.0% | |
| ATGTGGCCATTCAGCAGGAA+AGG | - | chr1.3:68966701-68966720 | MS.gene49120:CDS | 50.0% | |
| ATTGTGAGGGTGGGGAACTT+TGG | - | chr1.3:68968191-68968210 | MS.gene49120:CDS | 50.0% | |
| CAACTCCACCTAGTTGGAAC+AGG | - | chr1.3:68970243-68970262 | MS.gene49120:intron | 50.0% | |
| CCAACTAGGTGGAGTTGGAA+TGG | + | chr1.3:68970240-68970259 | None:intergenic | 50.0% | |
| CCACAAGTGAAGGGAGTTAG+TGG | - | chr1.3:68971839-68971858 | MS.gene49120:intron | 50.0% | |
| CCACTAACTCCCTTCACTTG+TGG | + | chr1.3:68971842-68971861 | None:intergenic | 50.0% | |
| CCATTCCAACTCCACCTAGT+TGG | - | chr1.3:68970237-68970256 | MS.gene49120:intron | 50.0% | |
| CCGTGAAAATTGTGAGGGTG+GGG | - | chr1.3:68968183-68968202 | MS.gene49120:CDS | 50.0% | |
| CTAGGTGGAGTTGGAATGGA+GGG | + | chr1.3:68970236-68970255 | None:intergenic | 50.0% | |
| CTGTTCCAACTAGGTGGAGT+TGG | + | chr1.3:68970245-68970264 | None:intergenic | 50.0% | |
| CTTCCATGGATGTAGGCAAG+AGG | + | chr1.3:68969086-68969105 | None:intergenic | 50.0% | |
| GATACCCCTTTCCTGCTGAA+TGG | + | chr1.3:68966710-68966729 | None:intergenic | 50.0% | |
| GCATTGCACCCACAAGTGAA+GGG | - | chr1.3:68971830-68971849 | MS.gene49120:intron | 50.0% | |
| GCTGCCCCCTACATTTAGAT+AGG | + | chr1.3:68971794-68971813 | None:intergenic | 50.0% | |
| GGCAACCATGTCTTAGAGAG+AGG | + | chr1.3:68969271-68969290 | None:intergenic | 50.0% | |
| GGGTGTGTGGCTAACTTTGA+TGG | + | chr1.3:68968986-68969005 | None:intergenic | 50.0% | |
| TAGGTGGAGTTGGAATGGAG+GGG | + | chr1.3:68970235-68970254 | None:intergenic | 50.0% | |
| TGTGGCCATTCAGCAGGAAA+GGG | - | chr1.3:68966702-68966721 | MS.gene49120:CDS | 50.0% | |
| ! | ACATGGGAGGGATGCTGATT+TGG | - | chr1.3:68971901-68971920 | MS.gene49120:CDS | 50.0% |
| ! | CCCCACCCTCACAATTTTCA+CGG | + | chr1.3:68968186-68968205 | None:intergenic | 50.0% |
| ! | GGTCCCCTTATTTACAGGAC+GGG | - | chr1.3:68969343-68969362 | MS.gene49120:intron | 50.0% |
| !! | ATGGTAACAGGAGCATCCAG+CGG | - | chr1.3:68967100-68967119 | MS.gene49120:intron | 50.0% |
| !! | GGTCTAATGGTGTTGCTGAG+TGG | - | chr1.3:68967641-68967660 | MS.gene49120:intron | 50.0% |
| !! | TCAGCAGGAAAGGGGTATCT+GGG | - | chr1.3:68966711-68966730 | MS.gene49120:CDS | 50.0% |
| !! | TTCAGCAGGAAAGGGGTATC+TGG | - | chr1.3:68966710-68966729 | MS.gene49120:CDS | 50.0% |
| AGGTGGAGTTGGAATGGAGG+GGG | + | chr1.3:68970234-68970253 | None:intergenic | 55.0% | |
| CGCCAAACACACACGCCATA+CGG | - | chr1.3:68968331-68968350 | MS.gene49120:intron | 55.0% | |
| CGTATGGCGTGTGTGTTTGG+CGG | + | chr1.3:68968333-68968352 | None:intergenic | 55.0% | |
| GCACCTCTTGCCTACATCCA+TGG | - | chr1.3:68969080-68969099 | MS.gene49120:intron | 55.0% | |
| GGCCTCACTGCTATTGTCAC+TGG | - | chr1.3:68966785-68966804 | MS.gene49120:CDS | 55.0% | |
| GTATGGCGTGTGTGTTTGGC+GGG | + | chr1.3:68968332-68968351 | None:intergenic | 55.0% | |
| GTGGCCATTCAGCAGGAAAG+GGG | - | chr1.3:68966703-68966722 | MS.gene49120:CDS | 55.0% | |
| TATGGCGTGTGTGTTTGGCG+GGG | + | chr1.3:68968331-68968350 | None:intergenic | 55.0% | |
| ! | AGATTGGTGGCAATGCCTCC+TGG | + | chr1.3:68970482-68970501 | None:intergenic | 55.0% |
| ! | GCAGTCTCCCTCCCTTTTGA+TGG | - | chr1.3:68970365-68970384 | MS.gene49120:intron | 55.0% |
| !! | ACAGGAGCATCCAGCGGTAT+TGG | - | chr1.3:68967106-68967125 | MS.gene49120:intron | 55.0% |
| ATGGCGTGTGTGTTTGGCGG+GGG | + | chr1.3:68968330-68968349 | None:intergenic | 60.0% | |
| TGGCGTGTGTGTTTGGCGGG+GGG | + | chr1.3:68968329-68968348 | None:intergenic | 65.0% | |
| GGCGTGTGTGTTTGGCGGGG+GGG | + | chr1.3:68968328-68968347 | None:intergenic | 70.0% | |
| GTGTGTTTGGCGGGGGGGAG+CGG | + | chr1.3:68968323-68968342 | None:intergenic | 70.0% | |
| TGTGTTTGGCGGGGGGGAGC+GGG | + | chr1.3:68968322-68968341 | None:intergenic | 70.0% | |
| GTGTTTGGCGGGGGGGAGCG+GGG | + | chr1.3:68968321-68968340 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 68966701 | 68971970 | 68966701 | ID=MS.gene49120 |
| chr1.3 | mRNA | 68966701 | 68971970 | 68966701 | ID=MS.gene49120.t1;Parent=MS.gene49120 |
| chr1.3 | exon | 68971865 | 68971970 | 68971865 | ID=MS.gene49120.t1.exon1;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68971865 | 68971970 | 68971865 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| chr1.3 | exon | 68971330 | 68971561 | 68971330 | ID=MS.gene49120.t1.exon2;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68971330 | 68971561 | 68971330 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| chr1.3 | exon | 68970616 | 68970695 | 68970616 | ID=MS.gene49120.t1.exon3;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68970616 | 68970695 | 68970616 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| chr1.3 | exon | 68970048 | 68970201 | 68970048 | ID=MS.gene49120.t1.exon4;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68970048 | 68970201 | 68970048 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| chr1.3 | exon | 68968839 | 68968917 | 68968839 | ID=MS.gene49120.t1.exon5;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68968839 | 68968917 | 68968839 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| chr1.3 | exon | 68968144 | 68968228 | 68968144 | ID=MS.gene49120.t1.exon6;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68968144 | 68968228 | 68968144 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| chr1.3 | exon | 68967042 | 68967088 | 68967042 | ID=MS.gene49120.t1.exon7;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68967042 | 68967088 | 68967042 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| chr1.3 | exon | 68966701 | 68966865 | 68966701 | ID=MS.gene49120.t1.exon8;Parent=MS.gene49120.t1 |
| chr1.3 | CDS | 68966701 | 68966865 | 68966701 | ID=cds.MS.gene49120.t1;Parent=MS.gene49120.t1 |
| Gene Sequence |
| Protein sequence |
