Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052513.t1 | XP_013457081.1 | 94.7 | 433 | 15 | 3 | 1 | 433 | 1 | 425 | 5.60E-230 | 806.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052513.t1 | Q94BX4 | 79.4 | 427 | 76 | 1 | 7 | 433 | 3 | 417 | 1.3e-195 | 683.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052513.t1 | A0A072UN35 | 94.7 | 433 | 15 | 3 | 1 | 433 | 1 | 425 | 4.1e-230 | 806.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052513 | MS.gene05415 | 0.804752 | 1.86E-49 | -1.69E-46 |
| MS.gene052513 | MS.gene31283 | 0.800429 | 1.45E-48 | -1.69E-46 |
| MS.gene052513 | MS.gene32029 | 0.902159 | 1.29E-78 | -1.69E-46 |
| MS.gene052513 | MS.gene33764 | 0.811726 | 6.06E-51 | -1.69E-46 |
| MS.gene052513 | MS.gene34667 | 0.814956 | 1.18E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052513.t1 | MTR_4g089065 | 94.266 | 436 | 11 | 3 | 1 | 433 | 1 | 425 | 0.0 | 834 |
| MS.gene052513.t1 | MTR_2g095220 | 82.517 | 429 | 65 | 2 | 6 | 434 | 4 | 422 | 0.0 | 729 |
| MS.gene052513.t1 | MTR_2g095220 | 83.459 | 399 | 56 | 2 | 6 | 404 | 4 | 392 | 0.0 | 679 |
| MS.gene052513.t1 | MTR_2g095220 | 82.462 | 325 | 47 | 2 | 6 | 330 | 4 | 318 | 0.0 | 541 |
| MS.gene052513.t1 | MTR_2g047140 | 90.000 | 70 | 7 | 0 | 44 | 113 | 140 | 209 | 4.33e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052513.t1 | AT3G45100 | 79.616 | 417 | 73 | 1 | 7 | 423 | 3 | 407 | 0.0 | 691 |
| MS.gene052513.t1 | AT3G45100 | 79.616 | 417 | 73 | 1 | 7 | 423 | 3 | 407 | 0.0 | 691 |
| MS.gene052513.t1 | AT3G45100 | 79.616 | 417 | 73 | 1 | 7 | 423 | 3 | 407 | 0.0 | 691 |
| MS.gene052513.t1 | AT1G73160 | 26.648 | 364 | 218 | 12 | 25 | 360 | 98 | 440 | 2.95e-19 | 90.5 |
Find 97 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGAATAGTTCTTATAAT+TGG | 0.157108 | 4.3:+23633290 | None:intergenic |
| GTCCAGTCTGTTCTAATAAA+AGG | 0.158479 | 4.3:-23632181 | MS.gene052513:CDS |
| TTGAAGGTTCGTTTCATTAT+TGG | 0.197372 | 4.3:-23632301 | MS.gene052513:intron |
| GCAGCATAGTTATCGCCTTC+TGG | 0.281379 | 4.3:+23630746 | None:intergenic |
| TGAAAAGCATTCGATTCTTA+TGG | 0.288138 | 4.3:-23633887 | MS.gene052513:CDS |
| GGCGGAGGCGGAGGCGGAGG+AGG | 0.302269 | 4.3:-23632952 | MS.gene052513:CDS |
| GGATGCAATCGACACACTTC+TGG | 0.311306 | 4.3:+23632840 | None:intergenic |
| AACACATTTCCAACTTTGTA+TGG | 0.315745 | 4.3:-23633320 | MS.gene052513:CDS |
| GCCTCCGACACTGGCTTAAA+TGG | 0.316977 | 4.3:+23632972 | None:intergenic |
| CAAGCAAGTCGGCTCCTTTA+CGG | 0.323790 | 4.3:+23632874 | None:intergenic |
| ATATACAATTTCGGTCCTTT+TGG | 0.324635 | 4.3:+23630577 | None:intergenic |
| CAAGATCGAGTTGGTTTGTT+GGG | 0.351826 | 4.3:-23632223 | MS.gene052513:CDS |
| ACAACTAGCAGCCTCTAATA+TGG | 0.367430 | 4.3:+23631035 | None:intergenic |
| TCCGCCTCCGCCTCCGACAC+TGG | 0.369391 | 4.3:+23632963 | None:intergenic |
| GGAGGCGGAGGCGGAGGCGG+AGG | 0.372171 | 4.3:-23632955 | MS.gene052513:CDS |
| TTGGCAGTGTCAACAGCATT+AGG | 0.387563 | 4.3:+23633002 | None:intergenic |
| TCCTCCAACCGTACACGTTT+AGG | 0.399496 | 4.3:+23632268 | None:intergenic |
| GTCGGAGGCGGAGGCGGAGG+CGG | 0.401289 | 4.3:-23632958 | MS.gene052513:CDS |
| AGCACGATCATATACAATTT+CGG | 0.403550 | 4.3:+23630568 | None:intergenic |
| GCCAGTGTCGGAGGCGGAGG+CGG | 0.403742 | 4.3:-23632964 | MS.gene052513:CDS |
| AACCTTCTCCGGCGCCAAAC+CGG | 0.405406 | 4.3:+23633034 | None:intergenic |
| TTTACCGATCATTCCTTGAA+TGG | 0.407272 | 4.3:-23633170 | MS.gene052513:CDS |
| TGAGAATAGTTCTTATAATT+GGG | 0.413206 | 4.3:+23633291 | None:intergenic |
| ACCAGATGATATGATTGTTT+TGG | 0.414859 | 4.3:-23630803 | MS.gene052513:CDS |
| GTCCGGTTTGGCGCCGGAGA+AGG | 0.430100 | 4.3:-23633036 | MS.gene052513:CDS |
| CCATGATTCTAGCATGCATA+AGG | 0.430190 | 4.3:+23633207 | None:intergenic |
| GACACCTCTCTTGCGGAGCA+TGG | 0.430975 | 4.3:-23630185 | MS.gene052513:CDS |
| CATGCTTATGGAAAACGCTC+TGG | 0.432407 | 4.3:-23633407 | MS.gene052513:CDS |
| AGTGTCGGAGGCGGAGGCGG+AGG | 0.432443 | 4.3:-23632961 | MS.gene052513:CDS |
| CGTTTCATTATTGGAGGTGA+TGG | 0.435650 | 4.3:-23632292 | MS.gene052513:CDS |
| CTCTCTTGCGGAGCATGGGC+AGG | 0.437196 | 4.3:-23630180 | MS.gene052513:CDS |
| AGCATCACTAAAACCATTCA+AGG | 0.443771 | 4.3:+23633157 | None:intergenic |
| TACCTTGGCAGATGTGAGTC+AGG | 0.451847 | 4.3:-23633102 | MS.gene052513:CDS |
| CTCATGACAAAGTGTTGAAA+AGG | 0.457480 | 4.3:+23633232 | None:intergenic |
| GCCAAAACAATCATATCATC+TGG | 0.465468 | 4.3:+23630802 | None:intergenic |
| TCAAGATCGAGTTGGTTTGT+TGG | 0.467716 | 4.3:-23632224 | MS.gene052513:CDS |
| CCTTATGCATGCTAGAATCA+TGG | 0.471659 | 4.3:-23633207 | MS.gene052513:CDS |
| TTTGAGGTCCGGTTTGGCGC+CGG | 0.472709 | 4.3:-23633042 | MS.gene052513:CDS |
| TCCAGTCTGTTCTAATAAAA+GGG | 0.474939 | 4.3:-23632180 | MS.gene052513:CDS |
| TAAGCCAGTGTCGGAGGCGG+AGG | 0.475197 | 4.3:-23632967 | MS.gene052513:CDS |
| TTCTCGACACCACCAACGTT+GGG | 0.478477 | 4.3:+23633847 | None:intergenic |
| ATGCTTATGGAAAACGCTCT+GGG | 0.482017 | 4.3:-23633406 | MS.gene052513:CDS |
| TATTGTTGTTATCAGTCGAT+TGG | 0.482179 | 4.3:-23632901 | MS.gene052513:CDS |
| AGAACCTGATCCAAGTGATA+TGG | 0.488416 | 4.3:-23630779 | MS.gene052513:CDS |
| GTGGTTGTAACTCATGCTTA+TGG | 0.491032 | 4.3:-23633419 | MS.gene052513:CDS |
| AGTCGATTGGTTTACCGTAA+AGG | 0.496026 | 4.3:-23632888 | MS.gene052513:CDS |
| AAGGTTCGTTTCATTATTGG+AGG | 0.502256 | 4.3:-23632298 | MS.gene052513:CDS |
| CCTTGTGGCCTAAGTTGAGC+AGG | 0.506293 | 4.3:+23633800 | None:intergenic |
| TCTCAATGCCTGCTCAACTT+AGG | 0.508173 | 4.3:-23633808 | MS.gene052513:CDS |
| TGGCTTAAATGGCTTAAACT+TGG | 0.511102 | 4.3:+23632983 | None:intergenic |
| CGCACCATATCACTTGGATC+AGG | 0.514256 | 4.3:+23630775 | None:intergenic |
| ATGTGTTTCTCATACAAGTA+AGG | 0.514270 | 4.3:-23633075 | MS.gene052513:CDS |
| TGCTAGAATCATGGGATACA+AGG | 0.515986 | 4.3:-23633198 | MS.gene052513:CDS |
| TAAAAGTCTACTATGTTCCA+TGG | 0.517005 | 4.3:-23633361 | MS.gene052513:CDS |
| ATATTAGAGGCTGCTAGTTG+TGG | 0.519552 | 4.3:-23631033 | MS.gene052513:CDS |
| CATTCTCTTCAAGATCGAGT+TGG | 0.519737 | 4.3:-23632232 | MS.gene052513:CDS |
| CTGCCCATGCTCCGCAAGAG+AGG | 0.520071 | 4.3:+23630181 | None:intergenic |
| GGGAGTGTTCCATACAAAGT+TGG | 0.520624 | 4.3:+23633311 | None:intergenic |
| ACACCTCTCTTGCGGAGCAT+GGG | 0.525914 | 4.3:-23630184 | MS.gene052513:CDS |
| GCCATTTAAGCCAGTGTCGG+AGG | 0.528866 | 4.3:-23632973 | MS.gene052513:CDS |
| CATGATTCTAGCATGCATAA+GGG | 0.530621 | 4.3:+23633208 | None:intergenic |
| CTTATGCATGCTAGAATCAT+GGG | 0.543612 | 4.3:-23633206 | MS.gene052513:CDS |
| ACCTAAACGTGTACGGTTGG+AGG | 0.551551 | 4.3:-23632269 | MS.gene052513:CDS |
| GCGTATATTGGAGCTATGGC+AGG | 0.555266 | 4.3:-23630115 | MS.gene052513:CDS |
| GCTGGCATGATGTTGCCAAA+AGG | 0.559543 | 4.3:-23630592 | MS.gene052513:CDS |
| TATGGCGTATATTGGAGCTA+TGG | 0.563402 | 4.3:-23630119 | MS.gene052513:CDS |
| TGATTAAAGAATGGTCTCCA+TGG | 0.563439 | 4.3:+23633344 | None:intergenic |
| GAAAGAATTACCGTTGTGCA+TGG | 0.568216 | 4.3:-23633263 | MS.gene052513:CDS |
| AAAACCATTCAAGGAATGAT+CGG | 0.584527 | 4.3:+23633166 | None:intergenic |
| ACTCGATTGTGCATGACTTG+AGG | 0.587904 | 4.3:+23630712 | None:intergenic |
| TAAGCCATTTAAGCCAGTGT+CGG | 0.590717 | 4.3:-23632976 | MS.gene052513:CDS |
| AGATGAGGGAACTCTATAGC+TGG | 0.592152 | 4.3:-23630610 | MS.gene052513:CDS |
| ATTGCGCGCACCATATCACT+TGG | 0.596121 | 4.3:+23630769 | None:intergenic |
| ATTTAAGCCAGTGTCGGAGG+CGG | 0.597549 | 4.3:-23632970 | MS.gene052513:CDS |
| TGGACCTAAACGTGTACGGT+TGG | 0.605008 | 4.3:-23632272 | MS.gene052513:CDS |
| ACAATTTCCGATCCGCTAGG+AGG | 0.612287 | 4.3:+23632924 | None:intergenic |
| CCTGCTCAACTTAGGCCACA+AGG | 0.612330 | 4.3:-23633800 | MS.gene052513:intron |
| TATGGTGCGCGCAATCCAGA+AGG | 0.612446 | 4.3:-23630761 | MS.gene052513:CDS |
| GTGATGGACCTAAACGTGTA+CGG | 0.614142 | 4.3:-23632276 | MS.gene052513:CDS |
| AATGTGTTCTGATTAAAGAA+TGG | 0.616415 | 4.3:+23633335 | None:intergenic |
| AGTTGAGCAGGCATTGAGAG+AGG | 0.618386 | 4.3:+23633812 | None:intergenic |
| ATAACAATTTCCGATCCGCT+AGG | 0.619141 | 4.3:+23632921 | None:intergenic |
| ATCTACTTGAACGACTCTCA+CGG | 0.623084 | 4.3:-23630526 | MS.gene052513:intron |
| GGAGCGTCCTCCTAGCGGAT+CGG | 0.629974 | 4.3:-23632931 | MS.gene052513:CDS |
| AGCCTGACTCACATCTGCCA+AGG | 0.635692 | 4.3:+23633100 | None:intergenic |
| ATTCTCGACACCACCAACGT+TGG | 0.636477 | 4.3:+23633846 | None:intergenic |
| TGGAAGTATTCACATGAACA+AGG | 0.644287 | 4.3:-23633135 | MS.gene052513:CDS |
| TCTGGGGTCAGATACATGAC+AGG | 0.646517 | 4.3:-23633389 | MS.gene052513:CDS |
| ACGCGTCGGAGGTGTTCCTG+AGG | 0.652194 | 4.3:-23630992 | MS.gene052513:intron |
| TCATACAAGTAAGGAGAACA+CGG | 0.658070 | 4.3:-23633066 | MS.gene052513:CDS |
| ACAGTTAGCACACGCGTCGG+AGG | 0.658214 | 4.3:-23631003 | MS.gene052513:CDS |
| TGCTTATGGAAAACGCTCTG+GGG | 0.662549 | 4.3:-23633405 | MS.gene052513:CDS |
| GAGGAGGAGCGTCCTCCTAG+CGG | 0.667739 | 4.3:-23632936 | MS.gene052513:CDS |
| AATGACTTCAACAAGCAAGT+CGG | 0.671637 | 4.3:+23632863 | None:intergenic |
| GGGGTCAGATACATGACAGG+TGG | 0.683959 | 4.3:-23633386 | MS.gene052513:CDS |
| TTAACAGTTAGCACACGCGT+CGG | 0.711950 | 4.3:-23631006 | MS.gene052513:CDS |
| GGTTTGATGTCCATGCACAA+CGG | 0.712542 | 4.3:+23633253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTTATGATATAAG+TGG | + | chr4.3:23630321-23630340 | None:intergenic | 10.0% |
| !! | TCTAAAAATTACAATTTATT+TGG | + | chr4.3:23631650-23631669 | None:intergenic | 10.0% |
| !!! | AAATTGTAATTTTTAGAATT+TGG | - | chr4.3:23631653-23631672 | MS.gene052513:intron | 10.0% |
| !!! | TTATTAATTTGAAGATATTA+AGG | - | chr4.3:23632854-23632873 | MS.gene052513:CDS | 10.0% |
| !! | CACAATATTTATATGATTAT+TGG | - | chr4.3:23631558-23631577 | MS.gene052513:intron | 15.0% |
| !! | TGTGAAAATGAATATTAAAA+GGG | + | chr4.3:23631542-23631561 | None:intergenic | 15.0% |
| !! | TTGTGAAAATGAATATTAAA+AGG | + | chr4.3:23631543-23631562 | None:intergenic | 15.0% |
| !!! | AATTTTTTGCTTCAAATATA+AGG | - | chr4.3:23632094-23632113 | MS.gene052513:intron | 15.0% |
| !!! | ATATTTGAAGCAAAAAATTA+AGG | + | chr4.3:23632093-23632112 | None:intergenic | 15.0% |
| !!! | ATTATTCAAAATTTTGAAGT+CGG | - | chr4.3:23631441-23631460 | MS.gene052513:intron | 15.0% |
| !!! | ATTTTTTGCTTCAAATATAA+GGG | - | chr4.3:23632095-23632114 | MS.gene052513:intron | 15.0% |
| !!! | GATATTATTTATTTTGTATC+TGG | - | chr4.3:23632907-23632926 | MS.gene052513:CDS | 15.0% |
| !!! | TTTCTTTCTTTTAAGTTTTA+TGG | - | chr4.3:23631906-23631925 | MS.gene052513:intron | 15.0% |
| !! | AACTAATACCTAATGAATTA+AGG | - | chr4.3:23633755-23633774 | MS.gene052513:intron | 20.0% |
| !! | AAGAATAGAAAAAATACTTG+TGG | + | chr4.3:23633060-23633079 | None:intergenic | 20.0% |
| !! | AAGAATTATATCTCTTGAAA+AGG | - | chr4.3:23630428-23630447 | MS.gene052513:intron | 20.0% |
| !! | AATAGAATCAAGTGAAATAA+TGG | - | chr4.3:23631624-23631643 | MS.gene052513:intron | 20.0% |
| !! | AGAATATATTGCAAAAAAAG+TGG | + | chr4.3:23631388-23631407 | None:intergenic | 20.0% |
| !! | AGGTTCAATATAATTCTAAT+AGG | - | chr4.3:23633530-23633549 | MS.gene052513:intron | 20.0% |
| !! | TCAAAGATAAACTACATAAA+AGG | + | chr4.3:23633099-23633118 | None:intergenic | 20.0% |
| !! | TGAGAATAGTTCTTATAATT+GGG | + | chr4.3:23630732-23630751 | None:intergenic | 20.0% |
| !! | TTAATTCTTCTTTAGTTGTT+GGG | - | chr4.3:23632059-23632078 | MS.gene052513:intron | 20.0% |
| !! | TTATAGTTAATAACAGCAAT+AGG | + | chr4.3:23632528-23632547 | None:intergenic | 20.0% |
| !! | TTATTTCACTTGATTCTATT+AGG | + | chr4.3:23631624-23631643 | None:intergenic | 20.0% |
| !!! | AAATTTTGAATAATGCAAAG+AGG | + | chr4.3:23631435-23631454 | None:intergenic | 20.0% |
| !!! | AACAAACATCTTTAAGAAAA+AGG | - | chr4.3:23632254-23632273 | MS.gene052513:CDS | 20.0% |
| ! | AAATGTAATTACCAATGATC+AGG | - | chr4.3:23630576-23630595 | MS.gene052513:CDS | 25.0% |
| ! | AACAATTCAACAGTTATTAC+GGG | + | chr4.3:23632662-23632681 | None:intergenic | 25.0% |
| ! | AATGTGTTCTGATTAAAGAA+TGG | + | chr4.3:23630688-23630707 | None:intergenic | 25.0% |
| ! | ATAACTATTCTATAAACCCA+GGG | - | chr4.3:23632467-23632486 | MS.gene052513:intron | 25.0% |
| ! | ATTAATTTAACAAATCCCCT+GGG | + | chr4.3:23632486-23632505 | None:intergenic | 25.0% |
| ! | CAACAATTCAACAGTTATTA+CGG | + | chr4.3:23632663-23632682 | None:intergenic | 25.0% |
| ! | CTTAATTCTTCTTTAGTTGT+TGG | - | chr4.3:23632058-23632077 | MS.gene052513:intron | 25.0% |
| ! | GACATAATGGTATTAACTTA+TGG | - | chr4.3:23631271-23631290 | MS.gene052513:intron | 25.0% |
| ! | GTGAGAATAGTTCTTATAAT+TGG | + | chr4.3:23630733-23630752 | None:intergenic | 25.0% |
| ! | GTGCAAAATGATTAATTCTT+TGG | + | chr4.3:23630465-23630484 | None:intergenic | 25.0% |
| ! | TATACAAAAAGCTTCTGTTA+AGG | + | chr4.3:23632964-23632983 | None:intergenic | 25.0% |
| ! | TCACTATTATACAACATTTC+TGG | - | chr4.3:23632019-23632038 | MS.gene052513:intron | 25.0% |
| ! | TGTAAGTTCCTTAATTCATT+AGG | + | chr4.3:23633766-23633785 | None:intergenic | 25.0% |
| ! | TGTTGTATAATAGTGAATCT+CGG | + | chr4.3:23632015-23632034 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAAAAGG+AGG | - | chr4.3:23632257-23632276 | MS.gene052513:CDS | 25.0% |
| !! | AGTAGTAAAACAGTGTATTT+TGG | - | chr4.3:23633666-23633685 | MS.gene052513:intron | 25.0% |
| !! | ATCTAGATTTTTGTCTAATG+TGG | - | chr4.3:23631249-23631268 | MS.gene052513:intron | 25.0% |
| !! | CATATTTTCTTAAACAGGTT+TGG | - | chr4.3:23631863-23631882 | MS.gene052513:intron | 25.0% |
| !! | GATTAAAGAATTTTATGCTC+AGG | + | chr4.3:23633625-23633644 | None:intergenic | 25.0% |
| !! | GTAGTAAAACAGTGTATTTT+GGG | - | chr4.3:23633667-23633686 | MS.gene052513:intron | 25.0% |
| !! | GTTTTTATCCATCCTTTATA+TGG | - | chr4.3:23632341-23632360 | MS.gene052513:intron | 25.0% |
| !! | TCTTGTCAATTCCAATATTT+TGG | - | chr4.3:23633143-23633162 | MS.gene052513:CDS | 25.0% |
| !! | TTTTTGTATAGCCATATTAG+AGG | - | chr4.3:23632974-23632993 | MS.gene052513:CDS | 25.0% |
| !!! | AATTCCAATATTTTGGACTA+CGG | - | chr4.3:23633150-23633169 | MS.gene052513:CDS | 25.0% |
| !!! | TGATCTTCAGTTTTTTGTTA+TGG | - | chr4.3:23633883-23633902 | MS.gene052513:CDS | 25.0% |
| !!! | TGTTTATTTTCTGTAGATGA+GGG | - | chr4.3:23633396-23633415 | MS.gene052513:CDS | 25.0% |
| !!! | TTATCATTTTTCACCATTCT+AGG | - | chr4.3:23630250-23630269 | MS.gene052513:intron | 25.0% |
| !!! | TTTTTTGTTATGGCGTATAT+TGG | - | chr4.3:23633893-23633912 | MS.gene052513:CDS | 25.0% |
| AAAACAAGCCAACTTACATT+AGG | + | chr4.3:23631204-23631223 | None:intergenic | 30.0% | |
| AAAACCATTCAAGGAATGAT+CGG | + | chr4.3:23630857-23630876 | None:intergenic | 30.0% | |
| AACACATTTCCAACTTTGTA+TGG | - | chr4.3:23630700-23630719 | MS.gene052513:intron | 30.0% | |
| AACTTATGTATCCCATTTGA+AGG | - | chr4.3:23631703-23631722 | MS.gene052513:intron | 30.0% | |
| AAGAAATAAAGAACCTTTCC+AGG | + | chr4.3:23631892-23631911 | None:intergenic | 30.0% | |
| AATGAAACGAACCTTCAAAT+GGG | + | chr4.3:23631717-23631736 | None:intergenic | 30.0% | |
| ACAATTCAACAGTTATTACG+GGG | + | chr4.3:23632661-23632680 | None:intergenic | 30.0% | |
| AGCACGATCATATACAATTT+CGG | + | chr4.3:23633455-23633474 | None:intergenic | 30.0% | |
| AGTGGTTAAAGCAGTATATA+AGG | + | chr4.3:23630303-23630322 | None:intergenic | 30.0% | |
| AGTTGTAAAAGAAAATCCAC+TGG | - | chr4.3:23633560-23633579 | MS.gene052513:intron | 30.0% | |
| ATGTGTTTCTCATACAAGTA+AGG | - | chr4.3:23630945-23630964 | MS.gene052513:intron | 30.0% | |
| CAGATATTGAATGTTTGAAG+TGG | + | chr4.3:23632789-23632808 | None:intergenic | 30.0% | |
| CATTAATTTAACAAATCCCC+TGG | + | chr4.3:23632487-23632506 | None:intergenic | 30.0% | |
| CTGATGAAAGCAAAAGAAAA+GGG | + | chr4.3:23633353-23633372 | None:intergenic | 30.0% | |
| GATAACTATTCTATAAACCC+AGG | - | chr4.3:23632466-23632485 | MS.gene052513:intron | 30.0% | |
| GTTGTATAATAGTGAATCTC+GGG | + | chr4.3:23632014-23632033 | None:intergenic | 30.0% | |
| TAAAAGTCTACTATGTTCCA+TGG | - | chr4.3:23630659-23630678 | MS.gene052513:intron | 30.0% | |
| TAAATGTAGCTAAGGTAGAA+AGG | - | chr4.3:23632726-23632745 | MS.gene052513:intron | 30.0% | |
| TAACTATTCTATAAACCCAG+GGG | - | chr4.3:23632468-23632487 | MS.gene052513:intron | 30.0% | |
| TAATGAAACGAACCTTCAAA+TGG | + | chr4.3:23631718-23631737 | None:intergenic | 30.0% | |
| TAGATTCACTTCCTTACTAT+AGG | - | chr4.3:23633190-23633209 | MS.gene052513:CDS | 30.0% | |
| TATAAGGTGAAATAAGTGAG+TGG | + | chr4.3:23630287-23630306 | None:intergenic | 30.0% | |
| TCATACTACTTTAGATCAAC+AGG | - | chr4.3:23632412-23632431 | MS.gene052513:intron | 30.0% | |
| TCCAGTCTGTTCTAATAAAA+GGG | - | chr4.3:23631840-23631859 | MS.gene052513:intron | 30.0% | |
| TGAATAATGCAAAGAGGTTA+AGG | + | chr4.3:23631429-23631448 | None:intergenic | 30.0% | |
| TTAAGGTTCAAATAGAAGAC+AGG | + | chr4.3:23631412-23631431 | None:intergenic | 30.0% | |
| TTAGATCAACAGGTACTTTA+GGG | - | chr4.3:23632422-23632441 | MS.gene052513:intron | 30.0% | |
| TTGAAGGTTCGTTTCATTAT+TGG | - | chr4.3:23631719-23631738 | MS.gene052513:intron | 30.0% | |
| TTTAGATCAACAGGTACTTT+AGG | - | chr4.3:23632421-23632440 | MS.gene052513:intron | 30.0% | |
| TTTGTCTAATGTGGACATAA+TGG | - | chr4.3:23631258-23631277 | MS.gene052513:intron | 30.0% | |
| ! | AACTTTAGCAATCCTTTTTC+TGG | - | chr4.3:23633712-23633731 | MS.gene052513:intron | 30.0% |
| ! | AATGATAATGTGATACCTTG+TGG | + | chr4.3:23630238-23630257 | None:intergenic | 30.0% |
| ! | ACCAGATGATATGATTGTTT+TGG | - | chr4.3:23633217-23633236 | MS.gene052513:CDS | 30.0% |
| ! | ATATACAATTTCGGTCCTTT+TGG | + | chr4.3:23633446-23633465 | None:intergenic | 30.0% |
| ! | ATGACTTGAGGATCAATTTT+AGG | + | chr4.3:23633299-23633318 | None:intergenic | 30.0% |
| ! | TATTGTTGTTATCAGTCGAT+TGG | - | chr4.3:23631119-23631138 | MS.gene052513:intron | 30.0% |
| !! | AAGGGCATATTTTCTTAAAC+AGG | - | chr4.3:23631858-23631877 | MS.gene052513:intron | 30.0% |
| !! | CTGTTTATTTTCTGTAGATG+AGG | - | chr4.3:23633395-23633414 | MS.gene052513:CDS | 30.0% |
| !! | GATAATGAAGCCATTTTAAG+TGG | - | chr4.3:23632119-23632138 | MS.gene052513:intron | 30.0% |
| !! | TGAAAAGCATTCGATTCTTA+TGG | - | chr4.3:23630133-23630152 | MS.gene052513:CDS | 30.0% |
| AAAAGGCAAATCATTCCAAG+AGG | + | chr4.3:23631300-23631319 | None:intergenic | 35.0% | |
| AAAGGCAAATCATTCCAAGA+GGG | + | chr4.3:23631299-23631318 | None:intergenic | 35.0% | |
| AAATGAAACAGAATGACCAG+TGG | + | chr4.3:23633579-23633598 | None:intergenic | 35.0% | |
| AAGGTTCGTTTCATTATTGG+AGG | - | chr4.3:23631722-23631741 | MS.gene052513:intron | 35.0% | |
| AATCTGCTTGTAACTTAAGC+TGG | - | chr4.3:23633641-23633660 | MS.gene052513:intron | 35.0% | |
| AATGACTTCAACAAGCAAGT+CGG | + | chr4.3:23631160-23631179 | None:intergenic | 35.0% | |
| ACAGTTATTACGGGGTTATT+TGG | + | chr4.3:23632653-23632672 | None:intergenic | 35.0% | |
| ACCAAGGATACATAAGCAAA+AGG | + | chr4.3:23632703-23632722 | None:intergenic | 35.0% | |
| ACTCTCAACCATATAAAGGA+TGG | + | chr4.3:23632352-23632371 | None:intergenic | 35.0% | |
| AGCATCACTAAAACCATTCA+AGG | + | chr4.3:23630866-23630885 | None:intergenic | 35.0% | |
| ATAACTTATTGTGCTGTCTG+AGG | - | chr4.3:23630525-23630544 | MS.gene052513:intron | 35.0% | |
| ATCTGGTACAACCTATAGTA+AGG | + | chr4.3:23633204-23633223 | None:intergenic | 35.0% | |
| ATGACCGTAGTCCAAAATAT+TGG | + | chr4.3:23633157-23633176 | None:intergenic | 35.0% | |
| ATTATCCAAACAGAGCCTTA+GGG | - | chr4.3:23630368-23630387 | MS.gene052513:intron | 35.0% | |
| ATTTGTGACACAACTTAGCT+TGG | + | chr4.3:23632814-23632833 | None:intergenic | 35.0% | |
| CAGTTATTACGGGGTTATTT+GGG | + | chr4.3:23632652-23632671 | None:intergenic | 35.0% | |
| CATCACTCTCAACCATATAA+AGG | + | chr4.3:23632356-23632375 | None:intergenic | 35.0% | |
| CATGATTCTAGCATGCATAA+GGG | + | chr4.3:23630815-23630834 | None:intergenic | 35.0% | |
| CCTGATGAAAGCAAAAGAAA+AGG | + | chr4.3:23633354-23633373 | None:intergenic | 35.0% | |
| CTTATGCATGCTAGAATCAT+GGG | - | chr4.3:23630814-23630833 | MS.gene052513:intron | 35.0% | |
| GAACTTCTTGTACCAGAAAA+AGG | + | chr4.3:23633727-23633746 | None:intergenic | 35.0% | |
| GATTGCATCCTAATGTAAGT+TGG | - | chr4.3:23631193-23631212 | MS.gene052513:intron | 35.0% | |
| GCCAAAACAATCATATCATC+TGG | + | chr4.3:23633221-23633240 | None:intergenic | 35.0% | |
| GGAATTAAGTAGACCTAGAA+TGG | + | chr4.3:23630266-23630285 | None:intergenic | 35.0% | |
| GGAATTACAAAAACCTTCTC+CGG | + | chr4.3:23631000-23631019 | None:intergenic | 35.0% | |
| GTATGATAGATGAGAACAGT+TGG | + | chr4.3:23632213-23632232 | None:intergenic | 35.0% | |
| GTCCAGTCTGTTCTAATAAA+AGG | - | chr4.3:23631839-23631858 | MS.gene052513:intron | 35.0% | |
| TCATACAAGTAAGGAGAACA+CGG | - | chr4.3:23630954-23630973 | MS.gene052513:intron | 35.0% | |
| TGATTAAAGAATGGTCTCCA+TGG | + | chr4.3:23630679-23630698 | None:intergenic | 35.0% | |
| TGGCTTAAATGGCTTAAACT+TGG | + | chr4.3:23631040-23631059 | None:intergenic | 35.0% | |
| TGTAATTACCAATGATCAGG+TGG | - | chr4.3:23630579-23630598 | MS.gene052513:CDS | 35.0% | |
| TTAGCTACATTTACCAACCA+AGG | + | chr4.3:23632719-23632738 | None:intergenic | 35.0% | |
| TTCTATTAGGCTCCTACATA+AGG | + | chr4.3:23631611-23631630 | None:intergenic | 35.0% | |
| TTTACCGATCATTCCTTGAA+TGG | - | chr4.3:23630850-23630869 | MS.gene052513:intron | 35.0% | |
| TTTGCTTATGTATCCTTGGT+TGG | - | chr4.3:23632703-23632722 | MS.gene052513:intron | 35.0% | |
| ! | AACTCTCATTTTCTTCCCTA+AGG | + | chr4.3:23630386-23630405 | None:intergenic | 35.0% |
| ! | ACCTTTTGCTTATGTATCCT+TGG | - | chr4.3:23632699-23632718 | MS.gene052513:intron | 35.0% |
| ! | CAAGGTTTTGCAATTTACCT+TGG | - | chr4.3:23630903-23630922 | MS.gene052513:intron | 35.0% |
| ! | CCTTTTCTTTTGCTTTCATC+AGG | - | chr4.3:23633351-23633370 | MS.gene052513:CDS | 35.0% |
| ! | CTTTTCAACACTTTGTCATG+AGG | - | chr4.3:23630789-23630808 | MS.gene052513:CDS | 35.0% |
| !! | ATTGTGTTGGTTCCTTATGT+AGG | - | chr4.3:23631596-23631615 | MS.gene052513:intron | 35.0% |
| !! | CTCATGACAAAGTGTTGAAA+AGG | + | chr4.3:23630791-23630810 | None:intergenic | 35.0% |
| !! | TGGAAGTATTCACATGAACA+AGG | - | chr4.3:23630885-23630904 | MS.gene052513:intron | 35.0% |
| !! | TTGGTTGGTAAATGTAGCTA+AGG | - | chr4.3:23632718-23632737 | MS.gene052513:intron | 35.0% |
| !! | TTTCTGGTCTTAGAGATATG+CGG | - | chr4.3:23632035-23632054 | MS.gene052513:intron | 35.0% |
| !!! | GATTTTTTCTATCCCAACGT+TGG | - | chr4.3:23630161-23630180 | MS.gene052513:CDS | 35.0% |
| !!! | TTGAATGGTTTTAGTGATGC+TGG | - | chr4.3:23630865-23630884 | MS.gene052513:intron | 35.0% |
| AACAGCAATAGGTGCTTTAG+AGG | + | chr4.3:23632517-23632536 | None:intergenic | 40.0% | |
| AACCAACACAATAGCAACAC+TGG | + | chr4.3:23631588-23631607 | None:intergenic | 40.0% | |
| AAGGAACTGTAACAGTGCAA+AGG | + | chr4.3:23632945-23632964 | None:intergenic | 40.0% | |
| AAGGCAAATCATTCCAAGAG+GGG | + | chr4.3:23631298-23631317 | None:intergenic | 40.0% | |
| AATTACCAATGATCAGGTGG+TGG | - | chr4.3:23630582-23630601 | MS.gene052513:CDS | 40.0% | |
| ACAACTAGCAGCCTCTAATA+TGG | + | chr4.3:23632988-23633007 | None:intergenic | 40.0% | |
| AGAACCTGATCCAAGTGATA+TGG | - | chr4.3:23633241-23633260 | MS.gene052513:CDS | 40.0% | |
| ATAACAATTTCCGATCCGCT+AGG | + | chr4.3:23631102-23631121 | None:intergenic | 40.0% | |
| ATATTAGAGGCTGCTAGTTG+TGG | - | chr4.3:23632987-23633006 | MS.gene052513:CDS | 40.0% | |
| ATCTACTTGAACGACTCTCA+CGG | - | chr4.3:23633494-23633513 | MS.gene052513:intron | 40.0% | |
| ATCTTCATGCCATGTCATTC+AGG | + | chr4.3:23632449-23632468 | None:intergenic | 40.0% | |
| ATGCTTATGGAAAACGCTCT+GGG | - | chr4.3:23630614-23630633 | MS.gene052513:intron | 40.0% | |
| ATTAACTTATGGTCCCCTCT+TGG | - | chr4.3:23631282-23631301 | MS.gene052513:intron | 40.0% | |
| CAAGCTTCAGCCACTTAAAA+TGG | + | chr4.3:23632132-23632151 | None:intergenic | 40.0% | |
| CATTCTCTTCAAGATCGAGT+TGG | - | chr4.3:23631788-23631807 | MS.gene052513:intron | 40.0% | |
| CCATGATTCTAGCATGCATA+AGG | + | chr4.3:23630816-23630835 | None:intergenic | 40.0% | |
| CCATTCACACAATGTCAGTT+AGG | - | chr4.3:23632378-23632397 | MS.gene052513:intron | 40.0% | |
| CCTAACTGACATTGTGTGAA+TGG | + | chr4.3:23632381-23632400 | None:intergenic | 40.0% | |
| CCTTATGCATGCTAGAATCA+TGG | - | chr4.3:23630813-23630832 | MS.gene052513:intron | 40.0% | |
| CGTTTCATTATTGGAGGTGA+TGG | - | chr4.3:23631728-23631747 | MS.gene052513:intron | 40.0% | |
| GAAAGAATTACCGTTGTGCA+TGG | - | chr4.3:23630757-23630776 | MS.gene052513:CDS | 40.0% | |
| GATTATCCAAACAGAGCCTT+AGG | - | chr4.3:23630367-23630386 | MS.gene052513:intron | 40.0% | |
| GTGGTTGTAACTCATGCTTA+TGG | - | chr4.3:23630601-23630620 | MS.gene052513:CDS | 40.0% | |
| TAAGCCATTTAAGCCAGTGT+CGG | - | chr4.3:23631044-23631063 | MS.gene052513:CDS | 40.0% | |
| TATGGCGTATATTGGAGCTA+TGG | - | chr4.3:23633901-23633920 | MS.gene052513:CDS | 40.0% | |
| TGCTAGAATCATGGGATACA+AGG | - | chr4.3:23630822-23630841 | MS.gene052513:intron | 40.0% | |
| ! | ATTTTGGACTACGGTCATGT+GGG | - | chr4.3:23633159-23633178 | MS.gene052513:CDS | 40.0% |
| ! | GCCCTTTTATTAGAACAGAC+TGG | + | chr4.3:23631844-23631863 | None:intergenic | 40.0% |
| ! | TTCCAGTGTTGCTATTGTGT+TGG | - | chr4.3:23631583-23631602 | MS.gene052513:intron | 40.0% |
| ! | TTTTTCTATCCCAACGTTGG+TGG | - | chr4.3:23630164-23630183 | MS.gene052513:CDS | 40.0% |
| !! | AGTCGATTGGTTTACCGTAA+AGG | - | chr4.3:23631132-23631151 | MS.gene052513:intron | 40.0% |
| !! | CAAGATCGAGTTGGTTTGTT+GGG | - | chr4.3:23631797-23631816 | MS.gene052513:intron | 40.0% |
| !! | TATTTTGGACTACGGTCATG+TGG | - | chr4.3:23633158-23633177 | MS.gene052513:CDS | 40.0% |
| !! | TCAAGATCGAGTTGGTTTGT+TGG | - | chr4.3:23631796-23631815 | MS.gene052513:intron | 40.0% |
| !! | TGTTTTAGACACCTCTCTTG+CGG | - | chr4.3:23633828-23633847 | MS.gene052513:CDS | 40.0% |
| !!! | TTGGCTTGTTTTGCATAACG+CGG | - | chr4.3:23631212-23631231 | MS.gene052513:intron | 40.0% |
| AACGATGTTGCTCTCTGCAA+TGG | + | chr4.3:23631517-23631536 | None:intergenic | 45.0% | |
| ACGGGGTTATTTGGGTGAAA+CGG | + | chr4.3:23632644-23632663 | None:intergenic | 45.0% | |
| ACTCGATTGTGCATGACTTG+AGG | + | chr4.3:23633311-23633330 | None:intergenic | 45.0% | |
| ACTGTAACAGTGCAAAGGTC+AGG | + | chr4.3:23632940-23632959 | None:intergenic | 45.0% | |
| AGATGAGGGAACTCTATAGC+TGG | - | chr4.3:23633410-23633429 | MS.gene052513:CDS | 45.0% | |
| CATGCTTATGGAAAACGCTC+TGG | - | chr4.3:23630613-23630632 | MS.gene052513:intron | 45.0% | |
| CTCACGGTACACACTTTGAT+AGG | - | chr4.3:23633510-23633529 | MS.gene052513:intron | 45.0% | |
| CTTAAACAGGTTTGGCATCC+TGG | - | chr4.3:23631871-23631890 | MS.gene052513:intron | 45.0% | |
| GGTTTGATGTCCATGCACAA+CGG | + | chr4.3:23630770-23630789 | None:intergenic | 45.0% | |
| GTCTTTAGTGTCTACACTCG+AGG | + | chr4.3:23631681-23631700 | None:intergenic | 45.0% | |
| TAACAGTGCAAAGGTCAGGT+AGG | + | chr4.3:23632936-23632955 | None:intergenic | 45.0% | |
| TACAACCACCACCTGATCAT+TGG | + | chr4.3:23630590-23630609 | None:intergenic | 45.0% | |
| TCTCAATGCCTGCTCAACTT+AGG | - | chr4.3:23630212-23630231 | MS.gene052513:intron | 45.0% | |
| TGCTTATGGAAAACGCTCTG+GGG | - | chr4.3:23630615-23630634 | MS.gene052513:intron | 45.0% | |
| TTAACAGTTAGCACACGCGT+CGG | - | chr4.3:23633014-23633033 | MS.gene052513:CDS | 45.0% | |
| TTCTTCCCTAAGGCTCTGTT+TGG | + | chr4.3:23630376-23630395 | None:intergenic | 45.0% | |
| TTGGCAGTGTCAACAGCATT+AGG | + | chr4.3:23631021-23631040 | None:intergenic | 45.0% | |
| ! | CTTTAGGGACCTGAATGACA+TGG | - | chr4.3:23632437-23632456 | MS.gene052513:intron | 45.0% |
| ! | CTTTCTCTGTCAAGAAGCAC+CGG | + | chr4.3:23631330-23631349 | None:intergenic | 45.0% |
| ! | GATTTGCCTTTTTGTCCTGC+CGG | - | chr4.3:23631308-23631327 | MS.gene052513:intron | 45.0% |
| ! | GGCAGGAAAGATCTTTTGCT+TGG | - | chr4.3:23633857-23633876 | MS.gene052513:CDS | 45.0% |
| ! | GTAAGGAGAACACGGTTTTG+AGG | - | chr4.3:23630962-23630981 | MS.gene052513:intron | 45.0% |
| ! | TTTTGGACTACGGTCATGTG+GGG | - | chr4.3:23633160-23633179 | MS.gene052513:CDS | 45.0% |
| !! | GGGAGTGTTCCATACAAAGT+TGG | + | chr4.3:23630712-23630731 | None:intergenic | 45.0% |
| !! | GTGATGGACCTAAACGTGTA+CGG | - | chr4.3:23631744-23631763 | MS.gene052513:intron | 45.0% |
| ACAATTTCCGATCCGCTAGG+AGG | + | chr4.3:23631099-23631118 | None:intergenic | 50.0% | |
| ACAGGTTTGGCATCCTGGAA+AGG | - | chr4.3:23631876-23631895 | MS.gene052513:intron | 50.0% | |
| ACCTAAACGTGTACGGTTGG+AGG | - | chr4.3:23631751-23631770 | MS.gene052513:intron | 50.0% | |
| ATACTTGTGGTGCCTACCTC+AGG | + | chr4.3:23633047-23633066 | None:intergenic | 50.0% | |
| ATTCTCGACACCACCAACGT+TGG | + | chr4.3:23630177-23630196 | None:intergenic | 50.0% | |
| ATTGCGCGCACCATATCACT+TGG | + | chr4.3:23633254-23633273 | None:intergenic | 50.0% | |
| CCAGAGGTCATGCAACAAAC+TGG | + | chr4.3:23632609-23632628 | None:intergenic | 50.0% | |
| CGCACCATATCACTTGGATC+AGG | + | chr4.3:23633248-23633267 | None:intergenic | 50.0% | |
| GCAGCATAGTTATCGCCTTC+TGG | + | chr4.3:23633277-23633296 | None:intergenic | 50.0% | |
| GCGTATATTGGAGCTATGGC+AGG | - | chr4.3:23633905-23633924 | MS.gene052513:CDS | 50.0% | |
| GCTGGCATGATGTTGCCAAA+AGG | - | chr4.3:23633428-23633447 | MS.gene052513:intron | 50.0% | |
| GGATGCAATCGACACACTTC+TGG | + | chr4.3:23631183-23631202 | None:intergenic | 50.0% | |
| TACCTTGGCAGATGTGAGTC+AGG | - | chr4.3:23630918-23630937 | MS.gene052513:intron | 50.0% | |
| TCCTCCAACCGTACACGTTT+AGG | + | chr4.3:23631755-23631774 | None:intergenic | 50.0% | |
| TGGACCTAAACGTGTACGGT+TGG | - | chr4.3:23631748-23631767 | MS.gene052513:intron | 50.0% | |
| TTCTCGACACCACCAACGTT+GGG | + | chr4.3:23630176-23630195 | None:intergenic | 50.0% | |
| ! | ATTTAAGCCAGTGTCGGAGG+CGG | - | chr4.3:23631050-23631069 | MS.gene052513:CDS | 50.0% |
| ! | CAAGCAAGTCGGCTCCTTTA+CGG | + | chr4.3:23631149-23631168 | None:intergenic | 50.0% |
| ! | TCTGGGGTCAGATACATGAC+AGG | - | chr4.3:23630631-23630650 | MS.gene052513:intron | 50.0% |
| !! | AGTTGAGCAGGCATTGAGAG+AGG | + | chr4.3:23630211-23630230 | None:intergenic | 50.0% |
| !! | CCAGTTTGTTGCATGACCTC+TGG | - | chr4.3:23632606-23632625 | MS.gene052513:intron | 50.0% |
| !! | TGCATGACCTCTGGAGCAAA+GGG | - | chr4.3:23632615-23632634 | MS.gene052513:intron | 50.0% |
| !! | TTGCATGACCTCTGGAGCAA+AGG | - | chr4.3:23632614-23632633 | MS.gene052513:intron | 50.0% |
| !!! | GAGAACACGGTTTTGAGGTC+CGG | - | chr4.3:23630967-23630986 | MS.gene052513:intron | 50.0% |
| ACACCTCTCTTGCGGAGCAT+GGG | - | chr4.3:23633836-23633855 | MS.gene052513:CDS | 55.0% | |
| AGCCTGACTCACATCTGCCA+AGG | + | chr4.3:23630923-23630942 | None:intergenic | 55.0% | |
| CCTGCTCAACTTAGGCCACA+AGG | - | chr4.3:23630220-23630239 | MS.gene052513:intron | 55.0% | |
| GGGGTCAGATACATGACAGG+TGG | - | chr4.3:23630634-23630653 | MS.gene052513:intron | 55.0% | |
| TATGGTGCGCGCAATCCAGA+AGG | - | chr4.3:23633259-23633278 | MS.gene052513:CDS | 55.0% | |
| ! | CCTTGTGGCCTAAGTTGAGC+AGG | + | chr4.3:23630223-23630242 | None:intergenic | 55.0% |
| ! | GCCATTTAAGCCAGTGTCGG+AGG | - | chr4.3:23631047-23631066 | MS.gene052513:CDS | 55.0% |
| !! | GAAGCACCGGCAGGACAAAA+AGG | + | chr4.3:23631317-23631336 | None:intergenic | 55.0% |
| !! | GCATGACCTCTGGAGCAAAG+GGG | - | chr4.3:23632616-23632635 | MS.gene052513:intron | 55.0% |
| !! | GCCTCCGACACTGGCTTAAA+TGG | + | chr4.3:23631051-23631070 | None:intergenic | 55.0% |
| !!! | CACGGTTTTGAGGTCCGGTT+TGG | - | chr4.3:23630972-23630991 | MS.gene052513:intron | 55.0% |
| AACCTTCTCCGGCGCCAAAC+CGG | + | chr4.3:23630989-23631008 | None:intergenic | 60.0% | |
| ACAGTTAGCACACGCGTCGG+AGG | - | chr4.3:23633017-23633036 | MS.gene052513:CDS | 60.0% | |
| GACACCTCTCTTGCGGAGCA+TGG | - | chr4.3:23633835-23633854 | MS.gene052513:CDS | 60.0% | |
| !! | CTCTGTCAAGAAGCACCGGC+AGG | + | chr4.3:23631326-23631345 | None:intergenic | 60.0% |
| !! | GTCGGAGGTGTTCCTGAGGT+AGG | - | chr4.3:23633032-23633051 | MS.gene052513:CDS | 60.0% |
| !! | TTTGAGGTCCGGTTTGGCGC+CGG | - | chr4.3:23630978-23630997 | MS.gene052513:intron | 60.0% |
| ACGGTGCCCCTTTGCTCCAG+AGG | + | chr4.3:23632625-23632644 | None:intergenic | 65.0% | |
| CTCTCTTGCGGAGCATGGGC+AGG | - | chr4.3:23633840-23633859 | MS.gene052513:CDS | 65.0% | |
| CTGCCCATGCTCCGCAAGAG+AGG | + | chr4.3:23633842-23633861 | None:intergenic | 65.0% | |
| ! | GGAGCGTCCTCCTAGCGGAT+CGG | - | chr4.3:23631089-23631108 | MS.gene052513:intron | 65.0% |
| ! | TAAGCCAGTGTCGGAGGCGG+AGG | - | chr4.3:23631053-23631072 | MS.gene052513:CDS | 65.0% |
| !! | ACGCGTCGGAGGTGTTCCTG+AGG | - | chr4.3:23633028-23633047 | MS.gene052513:CDS | 65.0% |
| !! | GAGGAGGAGCGTCCTCCTAG+CGG | - | chr4.3:23631084-23631103 | MS.gene052513:intron | 65.0% |
| !! | GTCCGGTTTGGCGCCGGAGA+AGG | - | chr4.3:23630984-23631003 | MS.gene052513:intron | 70.0% |
| TCCGCCTCCGCCTCCGACAC+TGG | + | chr4.3:23631060-23631079 | None:intergenic | 75.0% | |
| ! | AGTGTCGGAGGCGGAGGCGG+AGG | - | chr4.3:23631059-23631078 | MS.gene052513:CDS | 75.0% |
| ! | GCCAGTGTCGGAGGCGGAGG+CGG | - | chr4.3:23631056-23631075 | MS.gene052513:CDS | 75.0% |
| ! | GTCGGAGGCGGAGGCGGAGG+CGG | - | chr4.3:23631062-23631081 | MS.gene052513:CDS | 80.0% |
| ! | GGAGGCGGAGGCGGAGGCGG+AGG | - | chr4.3:23631065-23631084 | MS.gene052513:intron | 85.0% |
| ! | GGCGGAGGCGGAGGCGGAGG+AGG | - | chr4.3:23631068-23631087 | MS.gene052513:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 23630110 | 23633932 | 23630110 | ID=MS.gene052513 |
| chr4.3 | mRNA | 23630110 | 23633932 | 23630110 | ID=MS.gene052513.t1;Parent=MS.gene052513 |
| chr4.3 | exon | 23633801 | 23633932 | 23633801 | ID=MS.gene052513.t1.exon1;Parent=MS.gene052513.t1 |
| chr4.3 | CDS | 23633801 | 23633932 | 23633801 | ID=cds.MS.gene052513.t1;Parent=MS.gene052513.t1 |
| chr4.3 | exon | 23632836 | 23633444 | 23632836 | ID=MS.gene052513.t1.exon2;Parent=MS.gene052513.t1 |
| chr4.3 | CDS | 23632836 | 23633444 | 23632836 | ID=cds.MS.gene052513.t1;Parent=MS.gene052513.t1 |
| chr4.3 | exon | 23632163 | 23632317 | 23632163 | ID=MS.gene052513.t1.exon3;Parent=MS.gene052513.t1 |
| chr4.3 | CDS | 23632163 | 23632317 | 23632163 | ID=cds.MS.gene052513.t1;Parent=MS.gene052513.t1 |
| chr4.3 | exon | 23630993 | 23631083 | 23630993 | ID=MS.gene052513.t1.exon4;Parent=MS.gene052513.t1 |
| chr4.3 | CDS | 23630993 | 23631083 | 23630993 | ID=cds.MS.gene052513.t1;Parent=MS.gene052513.t1 |
| chr4.3 | exon | 23630714 | 23630830 | 23630714 | ID=MS.gene052513.t1.exon5;Parent=MS.gene052513.t1 |
| chr4.3 | CDS | 23630714 | 23630830 | 23630714 | ID=cds.MS.gene052513.t1;Parent=MS.gene052513.t1 |
| chr4.3 | exon | 23630527 | 23630630 | 23630527 | ID=MS.gene052513.t1.exon6;Parent=MS.gene052513.t1 |
| chr4.3 | CDS | 23630527 | 23630630 | 23630527 | ID=cds.MS.gene052513.t1;Parent=MS.gene052513.t1 |
| chr4.3 | exon | 23630110 | 23630206 | 23630110 | ID=MS.gene052513.t1.exon7;Parent=MS.gene052513.t1 |
| chr4.3 | CDS | 23630110 | 23630206 | 23630110 | ID=cds.MS.gene052513.t1;Parent=MS.gene052513.t1 |
| Gene Sequence |
| Protein sequence |
