AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052529

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052529.t1 MTR_4g089170 97.538 325 8 0 1 325 1 325 0.0 661
MS.gene052529.t1 MTR_1g088470 45.035 282 154 1 43 324 12 292 2.31e-83 255
MS.gene052529.t1 MTR_7g108770 44.086 279 154 1 43 321 12 288 1.29e-78 243
MS.gene052529.t1 MTR_1g115535 43.728 279 156 1 47 325 18 295 4.27e-78 241
MS.gene052529.t1 MTR_1g115535 43.728 279 156 1 47 325 22 299 5.15e-78 241
MS.gene052529.t1 MTR_6g025610 39.932 293 174 2 30 321 34 325 2.55e-77 240
MS.gene052529.t1 MTR_1g095110 42.295 305 157 8 25 320 18 312 3.66e-77 239
MS.gene052529.t1 MTR_4g127220 39.935 308 182 3 19 325 11 316 3.99e-77 239
MS.gene052529.t1 MTR_6g018490 41.091 275 161 1 47 321 62 335 1.00e-75 236
MS.gene052529.t1 MTR_7g007260 40.727 275 162 1 47 321 63 336 9.71e-75 234
MS.gene052529.t1 MTR_6g084420 39.785 279 166 2 44 321 59 336 6.81e-74 231
MS.gene052529.t1 MTR_1g110670 39.209 278 169 0 47 324 81 358 8.01e-70 221
MS.gene052529.t1 MTR_5g056550 37.770 278 173 0 47 324 115 392 1.37e-68 219
MS.gene052529.t1 MTR_7g007260 37.455 275 158 2 47 321 63 323 1.72e-63 204
MS.gene052529.t1 MTR_7g007260 37.319 276 158 3 47 321 63 324 5.50e-62 201
MS.gene052529.t1 MTR_5g056550 34.173 278 150 2 47 324 115 359 3.59e-55 184
MS.gene052529.t1 MTR_6g071475 36.620 284 166 9 43 323 118 390 1.99e-42 151
MS.gene052529.t1 MTR_3g109870 31.293 294 155 12 41 323 97 354 1.87e-29 115
MS.gene052529.t1 MTR_5g056550 35.606 132 85 0 47 178 115 246 5.27e-27 107
MS.gene052529.t1 MTR_5g056550 35.115 131 85 0 47 177 115 245 1.74e-26 105
MS.gene052529.t1 MTR_1g110680 41.791 67 39 0 257 323 38 104 2.15e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052529.t1 AT1G11090 69.079 304 94 0 21 324 12 315 2.19e-161 453
MS.gene052529.t1 AT5G16120 43.357 286 160 2 37 321 53 337 4.70e-80 248
MS.gene052529.t1 AT5G16120 43.357 286 160 2 37 321 53 337 4.70e-80 248
MS.gene052529.t1 AT5G16120 43.357 286 160 2 37 321 71 355 8.01e-80 248
MS.gene052529.t1 AT5G16120 43.357 286 160 2 37 321 85 369 1.22e-79 248
MS.gene052529.t1 AT3G62860 43.682 277 154 1 47 323 17 291 1.29e-79 246
MS.gene052529.t1 AT2G47630 43.321 277 157 0 47 323 17 293 5.13e-79 245
MS.gene052529.t1 AT5G14980 39.744 312 183 4 15 325 10 317 1.36e-78 243
MS.gene052529.t1 AT2G39420 43.310 284 160 1 40 323 12 294 2.21e-78 242
MS.gene052529.t1 AT5G19290 39.088 307 179 3 23 325 16 318 1.97e-75 235
MS.gene052529.t1 AT3G55180 43.060 281 160 0 44 324 10 290 2.14e-75 234
MS.gene052529.t1 AT2G39410 42.606 284 162 1 40 323 12 294 7.28e-75 233
MS.gene052529.t1 AT2G39400 42.500 280 160 1 45 324 11 289 1.20e-73 230
MS.gene052529.t1 AT1G52760 38.562 306 185 3 21 325 22 325 4.69e-72 226
MS.gene052529.t1 AT3G55190 41.007 278 162 2 47 323 19 295 1.25e-69 219
MS.gene052529.t1 AT3G62860 44.304 237 132 0 87 323 12 248 4.04e-68 215
MS.gene052529.t1 AT2G47630 43.320 247 140 0 77 323 2 248 2.03e-66 211
MS.gene052529.t1 AT2G47630 44.726 237 131 0 87 323 32 268 5.82e-66 211
MS.gene052529.t1 AT1G77420 37.729 273 170 0 51 323 106 378 1.28e-60 198
MS.gene052529.t1 AT1G73480 39.100 289 158 9 41 324 188 463 1.37e-49 172
MS.gene052529.t1 AT1G18360 37.500 288 165 8 41 324 106 382 4.97e-48 166
MS.gene052529.t1 AT2G39400 38.679 212 129 1 45 256 11 221 8.30e-45 153
MS.gene052529.t1 AT5G11650 34.471 293 164 10 41 323 104 378 3.17e-40 145
MS.gene052529.t1 AT2G39410 38.384 99 60 1 40 138 12 109 2.15e-18 80.1
MS.gene052529.t1 AT5G11650 30.769 208 119 9 41 238 104 296 8.51e-17 79.7

Find 78 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGAGGGTTAGGTTTCT+TGG 0.206429 4.3:+23339371 None:intergenic
AAAGTTAAAATTTGAGGAAT+TGG 0.255633 4.3:+23338951 None:intergenic
TGTTTGTAGTATTCGGATTC+TGG 0.263436 4.3:+23339431 None:intergenic
ATAGCACCTTGAAACCCTTT+TGG 0.286890 4.3:+23339023 None:intergenic
AAGAAGATTGAAGAAGCTTT+TGG 0.317467 4.3:+23339480 None:intergenic
GAGTGAAGATAAGAGTATTA+AGG 0.332679 4.3:-23338655 MS.gene052529:CDS
CGTGGTGGGGTGGTAGGGTT+TGG 0.335829 4.3:+23339335 None:intergenic
CCCATTTGAGCAAGGAAGAT+TGG 0.341554 4.3:+23339251 None:intergenic
TTTGTGTTGTTTGTAGTATT+CGG 0.352130 4.3:+23339424 None:intergenic
ATTTGAGGAATTGGCCATTT+GGG 0.352270 4.3:+23338960 None:intergenic
ACTACCATGCAACACAATAA+AGG 0.353206 4.3:+23338731 None:intergenic
ATGAATCCTTTGAGGTATAG+AGG 0.357188 4.3:-23338834 MS.gene052529:CDS
TCCAATCTTCCTTGCTCAAA+TGG 0.364325 4.3:-23339252 MS.gene052529:CDS
TGTTTCTCTCTTGATCTTCA+AGG 0.369035 4.3:-23339221 MS.gene052529:CDS
AGAAAGATTCAAACTTTGTT+GGG 0.380125 4.3:-23339112 MS.gene052529:CDS
CTTCTTCATACCCTTACTAC+TGG 0.381849 4.3:-23339463 MS.gene052529:CDS
AGATCAGGTGTAGGAACAAT+AGG 0.382799 4.3:+23338903 None:intergenic
AAGAGTATTAAGGTGTTTGA+TGG 0.389742 4.3:-23338645 MS.gene052529:CDS
TATAGAGGGAAACCTAGGTT+AGG 0.390724 4.3:-23338819 MS.gene052529:CDS
ATGATCTTGTGAAGAGGGTT+AGG 0.391175 4.3:+23339363 None:intergenic
AGGGTTTCAAGGTGCTATTT+TGG 0.399644 4.3:-23339018 MS.gene052529:CDS
CCAATCTTCCTTGCTCAAAT+GGG 0.405887 4.3:-23339251 MS.gene052529:CDS
AATTTGAGGAATTGGCCATT+TGG 0.411545 4.3:+23338959 None:intergenic
TTGCTCAAATGAATCCTTTG+AGG 0.411616 4.3:-23338842 MS.gene052529:CDS
AGAGCACGTGGTGGGGTGGT+AGG 0.424495 4.3:+23339329 None:intergenic
TTACTGATCCTGAGGTTAGT+AGG 0.426605 4.3:-23338698 MS.gene052529:CDS
GCTGATCCAAAAGGGTTTCA+AGG 0.426607 4.3:-23339029 MS.gene052529:CDS
ATGAGAATGTTGAAATTGTT+AGG 0.429955 4.3:-23338590 MS.gene052529:CDS
GGTGTGTAGCCCCAGTAGTA+AGG 0.430506 4.3:+23339452 None:intergenic
CAAGGAAGATTGGAGTGGAT+TGG 0.435441 4.3:+23339261 None:intergenic
AAGAAAGATTCAAACTTTGT+TGG 0.440580 4.3:-23339113 MS.gene052529:CDS
CTACCATGCAACACAATAAA+GGG 0.449233 4.3:+23338732 None:intergenic
GGGAATTGTATGAAGAAGCT+AGG 0.463498 4.3:-23338677 MS.gene052529:CDS
GTAGGAACAATAGGCAAAGT+TGG 0.473558 4.3:+23338912 None:intergenic
CAAGGACATGGTCATTCTCA+AGG 0.477582 4.3:-23339203 MS.gene052529:CDS
CATGTGTAAAATCTCTGATA+AGG 0.479554 4.3:-23338988 MS.gene052529:CDS
GAGCACGTGGTGGGGTGGTA+GGG 0.481270 4.3:+23339330 None:intergenic
TAGGTTTCTTGGTGTTGTGA+AGG 0.494001 4.3:+23339382 None:intergenic
ACAGACTTATACAAAAGATC+AGG 0.503183 4.3:+23338888 None:intergenic
TACTGATCCTGAGGTTAGTA+GGG 0.510507 4.3:-23338697 MS.gene052529:CDS
TCTCTTGATCTTCAAGGACA+TGG 0.518953 4.3:-23339215 MS.gene052529:CDS
TTCTTCATACCCTTACTACT+GGG 0.522282 4.3:-23339462 MS.gene052529:CDS
CTGATAAGGTTAGACCCAAA+TGG 0.529049 4.3:-23338974 MS.gene052529:CDS
AGAGTATTAAGGTGTTTGAT+GGG 0.547375 4.3:-23338644 MS.gene052529:CDS
TTATTATCAATGGAAGAAGA+AGG 0.549456 4.3:-23339515 None:intergenic
ATCTTCATGATCCATGGCTA+TGG 0.551295 4.3:-23339305 MS.gene052529:CDS
TACAATTCCCTACTAACCTC+AGG 0.553697 4.3:+23338690 None:intergenic
GCTATGGCAACGACATCTCA+TGG 0.554178 4.3:-23339289 MS.gene052529:CDS
TAACCCTCTTCACAAGATCA+TGG 0.557698 4.3:-23339361 MS.gene052529:CDS
TGAATCCTTTGAGGTATAGA+GGG 0.558623 4.3:-23338833 MS.gene052529:CDS
TGTGAAAGTTGATCATAAGA+AGG 0.559417 4.3:-23338868 MS.gene052529:CDS
GCTCTCATCTTCATGATCCA+TGG 0.570876 4.3:-23339311 MS.gene052529:CDS
GTGTGTAGCCCCAGTAGTAA+GGG 0.574049 4.3:+23339453 None:intergenic
CTACCCTTTATTGTGTTGCA+TGG 0.574111 4.3:-23338735 MS.gene052529:CDS
AAGCCATGATCTTGTGAAGA+GGG 0.575206 4.3:+23339358 None:intergenic
ATAGAGGGAAACCTAGGTTA+GGG 0.577722 4.3:-23338818 MS.gene052529:CDS
GGTTTCCCTCTATACCTCAA+AGG 0.583565 4.3:+23338828 None:intergenic
AGATGTCGTTGCCATAGCCA+TGG 0.594829 4.3:+23339294 None:intergenic
GAAGATTGGAGTGGATTGGA+AGG 0.598909 4.3:+23339265 None:intergenic
TTGAGCAAGGAAGATTGGAG+TGG 0.603705 4.3:+23339256 None:intergenic
TGAGGTATAGAGGGAAACCT+AGG 0.603962 4.3:-23338824 MS.gene052529:CDS
TGATGTTGTTACTGATCCTG+AGG 0.606341 4.3:-23338706 MS.gene052529:CDS
GAAGCCATGATCTTGTGAAG+AGG 0.612962 4.3:+23339357 None:intergenic
TGAAGATGAGAGCACGTGGT+GGG 0.613453 4.3:+23339321 None:intergenic
AAGCGAAACCCATTTGAGCA+AGG 0.634300 4.3:+23339243 None:intergenic
GAAACCTAGGTTAGGGACCG+TGG 0.638658 4.3:-23338811 MS.gene052529:CDS
TCCACCACGGTCCCTAACCT+AGG 0.644670 4.3:+23338807 None:intergenic
TGTACAACAAGGTCAACGCT+AGG 0.645731 4.3:+23339164 None:intergenic
TTATATGGTGAATCAATGGG+TGG 0.653291 4.3:-23339077 MS.gene052529:CDS
GATGAGAGCACGTGGTGGGG+TGG 0.655445 4.3:+23339325 None:intergenic
TTATACAAAAGATCAGGTGT+AGG 0.656762 4.3:+23338894 None:intergenic
TCTTCATACCCTTACTACTG+GGG 0.662115 4.3:-23339461 MS.gene052529:CDS
GAAGATGAGAGCACGTGGTG+GGG 0.666350 4.3:+23339322 None:intergenic
ATGAAGATGAGAGCACGTGG+TGG 0.684343 4.3:+23339320 None:intergenic
ACCTAGGTTAGGGACCGTGG+TGG 0.686207 4.3:-23338808 MS.gene052529:CDS
AACCTTCAAAAGCTCCACCA+CGG 0.693315 4.3:+23338794 None:intergenic
AGAGACAATCTTGTACAACA+AGG 0.707656 4.3:+23339153 None:intergenic
ATCATGAAGATGAGAGCACG+TGG 0.766597 4.3:+23339317 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAAAATTTGAGGAAT+TGG + chr4.3:23339109-23339128 None:intergenic 20.0%
!! GCTAAAAAAGTTAAAATTTG+AGG + chr4.3:23339115-23339134 None:intergenic 20.0%
!!! TTTTTATATGGTGAATCAAT+GGG - chr4.3:23338977-23338996 MS.gene052529:CDS 20.0%
!!! TTTTTTATATGGTGAATCAA+TGG - chr4.3:23338976-23338995 MS.gene052529:CDS 20.0%
! AAGAAAGATTCAAACTTTGT+TGG - chr4.3:23338944-23338963 MS.gene052529:CDS 25.0%
! AGAAAGATTCAAACTTTGTT+GGG - chr4.3:23338945-23338964 MS.gene052529:CDS 25.0%
! ATGAGAATGTTGAAATTGTT+AGG - chr4.3:23339467-23339486 MS.gene052529:CDS 25.0%
! GATTCACCATATAAAAAACA+AGG + chr4.3:23338974-23338993 None:intergenic 25.0%
!! TTATCAGAGATTTTACACAT+GGG + chr4.3:23339070-23339089 None:intergenic 25.0%
!!! TTTGTGTTGTTTGTAGTATT+CGG + chr4.3:23338636-23338655 None:intergenic 25.0%
ACAGACTTATACAAAAGATC+AGG + chr4.3:23339172-23339191 None:intergenic 30.0%
CATGTGTAAAATCTCTGATA+AGG - chr4.3:23339069-23339088 MS.gene052529:CDS 30.0%
TTATACAAAAGATCAGGTGT+AGG + chr4.3:23339166-23339185 None:intergenic 30.0%
! AAGAAGATTGAAGAAGCTTT+TGG + chr4.3:23338580-23338599 None:intergenic 30.0%
! AGAGTATTAAGGTGTTTGAT+GGG - chr4.3:23339413-23339432 MS.gene052529:CDS 30.0%
! ATTCATTTTGCTGATCCAAA+AGG - chr4.3:23339019-23339038 MS.gene052529:CDS 30.0%
! CTTATCAGAGATTTTACACA+TGG + chr4.3:23339071-23339090 None:intergenic 30.0%
! TGTGAAAGTTGATCATAAGA+AGG - chr4.3:23339189-23339208 MS.gene052529:CDS 30.0%
! TTAGGAATGATATTTTGCAG+TGG - chr4.3:23339485-23339504 MS.gene052529:CDS 30.0%
! TTCATTTTGCTGATCCAAAA+GGG - chr4.3:23339020-23339039 MS.gene052529:CDS 30.0%
!! AAGAGTATTAAGGTGTTTGA+TGG - chr4.3:23339412-23339431 MS.gene052529:CDS 30.0%
!! AGGTTACTGATATTTTGAGT+AGG - chr4.3:23339281-23339300 MS.gene052529:CDS 30.0%
!! ATGATGCATTCTTTGCTTTT+TGG - chr4.3:23339436-23339455 MS.gene052529:CDS 30.0%
!! GAGTGAAGATAAGAGTATTA+AGG - chr4.3:23339402-23339421 MS.gene052529:CDS 30.0%
AATTTGAGGAATTGGCCATT+TGG + chr4.3:23339101-23339120 None:intergenic 35.0%
ACTACCATGCAACACAATAA+AGG + chr4.3:23339329-23339348 None:intergenic 35.0%
AGAGACAATCTTGTACAACA+AGG + chr4.3:23338907-23338926 None:intergenic 35.0%
ATTTGAGGAATTGGCCATTT+GGG + chr4.3:23339100-23339119 None:intergenic 35.0%
CTACCATGCAACACAATAAA+GGG + chr4.3:23339328-23339347 None:intergenic 35.0%
TGTTTCTCTCTTGATCTTCA+AGG - chr4.3:23338836-23338855 MS.gene052529:CDS 35.0%
TGTTTGTAGTATTCGGATTC+TGG + chr4.3:23338629-23338648 None:intergenic 35.0%
TTATATGGTGAATCAATGGG+TGG - chr4.3:23338980-23338999 MS.gene052529:CDS 35.0%
TTCTTCATACCCTTACTACT+GGG - chr4.3:23338595-23338614 MS.gene052529:CDS 35.0%
TTGCTCAAATGAATCCTTTG+AGG - chr4.3:23339215-23339234 MS.gene052529:CDS 35.0%
!! ATGAATCCTTTGAGGTATAG+AGG - chr4.3:23339223-23339242 MS.gene052529:CDS 35.0%
!! TGAATCCTTTGAGGTATAGA+GGG - chr4.3:23339224-23339243 MS.gene052529:CDS 35.0%
!! TGTTGTGAAGGTTGATTTTG+TGG + chr4.3:23338666-23338685 None:intergenic 35.0%
!!! GGGTTGCCTTGTTTTTTATA+TGG - chr4.3:23338965-23338984 MS.gene052529:CDS 35.0%
AAGCCATGATCTTGTGAAGA+GGG + chr4.3:23338702-23338721 None:intergenic 40.0%
AGATCAGGTGTAGGAACAAT+AGG + chr4.3:23339157-23339176 None:intergenic 40.0%
ATAGAGGGAAACCTAGGTTA+GGG - chr4.3:23339239-23339258 MS.gene052529:CDS 40.0%
ATCTTCATGATCCATGGCTA+TGG - chr4.3:23338752-23338771 MS.gene052529:CDS 40.0%
ATGATCTTGTGAAGAGGGTT+AGG + chr4.3:23338697-23338716 None:intergenic 40.0%
CCAATCTTCCTTGCTCAAAT+GGG - chr4.3:23338806-23338825 MS.gene052529:CDS 40.0%
CTACCCTTTATTGTGTTGCA+TGG - chr4.3:23339322-23339341 MS.gene052529:CDS 40.0%
CTGATAAGGTTAGACCCAAA+TGG - chr4.3:23339083-23339102 MS.gene052529:CDS 40.0%
CTTCTTCATACCCTTACTAC+TGG - chr4.3:23338594-23338613 MS.gene052529:CDS 40.0%
GGGAATTGTATGAAGAAGCT+AGG - chr4.3:23339380-23339399 MS.gene052529:CDS 40.0%
GTAGGAACAATAGGCAAAGT+TGG + chr4.3:23339148-23339167 None:intergenic 40.0%
TAACCCTCTTCACAAGATCA+TGG - chr4.3:23338696-23338715 MS.gene052529:CDS 40.0%
TACAATTCCCTACTAACCTC+AGG + chr4.3:23339370-23339389 None:intergenic 40.0%
TACTGATCCTGAGGTTAGTA+GGG - chr4.3:23339360-23339379 MS.gene052529:CDS 40.0%
TATAGAGGGAAACCTAGGTT+AGG - chr4.3:23339238-23339257 MS.gene052529:CDS 40.0%
TCCAATCTTCCTTGCTCAAA+TGG - chr4.3:23338805-23338824 MS.gene052529:CDS 40.0%
TCTCTTGATCTTCAAGGACA+TGG - chr4.3:23338842-23338861 MS.gene052529:CDS 40.0%
TCTTCATACCCTTACTACTG+GGG - chr4.3:23338596-23338615 MS.gene052529:CDS 40.0%
TGATGTTGTTACTGATCCTG+AGG - chr4.3:23339351-23339370 MS.gene052529:CDS 40.0%
TTACTGATCCTGAGGTTAGT+AGG - chr4.3:23339359-23339378 MS.gene052529:CDS 40.0%
! ATAGCACCTTGAAACCCTTT+TGG + chr4.3:23339037-23339056 None:intergenic 40.0%
!! TAGGTTTCTTGGTGTTGTGA+AGG + chr4.3:23338678-23338697 None:intergenic 40.0%
!!! AGGGTTTCAAGGTGCTATTT+TGG - chr4.3:23339039-23339058 MS.gene052529:CDS 40.0%
AACCTTCAAAAGCTCCACCA+CGG + chr4.3:23339266-23339285 None:intergenic 45.0%
AAGCGAAACCCATTTGAGCA+AGG + chr4.3:23338817-23338836 None:intergenic 45.0%
CAAGGAAGATTGGAGTGGAT+TGG + chr4.3:23338799-23338818 None:intergenic 45.0%
CAAGGACATGGTCATTCTCA+AGG - chr4.3:23338854-23338873 MS.gene052529:CDS 45.0%
CCCATTTGAGCAAGGAAGAT+TGG + chr4.3:23338809-23338828 None:intergenic 45.0%
GAAGCCATGATCTTGTGAAG+AGG + chr4.3:23338703-23338722 None:intergenic 45.0%
GCTCTCATCTTCATGATCCA+TGG - chr4.3:23338746-23338765 MS.gene052529:CDS 45.0%
GCTGATCCAAAAGGGTTTCA+AGG - chr4.3:23339028-23339047 MS.gene052529:CDS 45.0%
GGTTTCCCTCTATACCTCAA+AGG + chr4.3:23339232-23339251 None:intergenic 45.0%
GTGAAGAGGGTTAGGTTTCT+TGG + chr4.3:23338689-23338708 None:intergenic 45.0%
TGAGGTATAGAGGGAAACCT+AGG - chr4.3:23339233-23339252 MS.gene052529:CDS 45.0%
TGTACAACAAGGTCAACGCT+AGG + chr4.3:23338896-23338915 None:intergenic 45.0%
TTGAGCAAGGAAGATTGGAG+TGG + chr4.3:23338804-23338823 None:intergenic 45.0%
! ATCATGAAGATGAGAGCACG+TGG + chr4.3:23338743-23338762 None:intergenic 45.0%
!! GAAGATTGGAGTGGATTGGA+AGG + chr4.3:23338795-23338814 None:intergenic 45.0%
AGATGTCGTTGCCATAGCCA+TGG + chr4.3:23338766-23338785 None:intergenic 50.0%
GCTATGGCAACGACATCTCA+TGG - chr4.3:23338768-23338787 MS.gene052529:CDS 50.0%
GTGTGTAGCCCCAGTAGTAA+GGG + chr4.3:23338607-23338626 None:intergenic 50.0%
! ATGAAGATGAGAGCACGTGG+TGG + chr4.3:23338740-23338759 None:intergenic 50.0%
! TGAAGATGAGAGCACGTGGT+GGG + chr4.3:23338739-23338758 None:intergenic 50.0%
GAAACCTAGGTTAGGGACCG+TGG - chr4.3:23339246-23339265 MS.gene052529:CDS 55.0%
GGTGTGTAGCCCCAGTAGTA+AGG + chr4.3:23338608-23338627 None:intergenic 55.0%
! GAAGATGAGAGCACGTGGTG+GGG + chr4.3:23338738-23338757 None:intergenic 55.0%
!! GACCGTGGTGGAGCTTTTGA+AGG - chr4.3:23339261-23339280 MS.gene052529:CDS 55.0%
ACCTAGGTTAGGGACCGTGG+TGG - chr4.3:23339249-23339268 MS.gene052529:CDS 60.0%
TCCACCACGGTCCCTAACCT+AGG + chr4.3:23339253-23339272 None:intergenic 60.0%
! AGAGCACGTGGTGGGGTGGT+AGG + chr4.3:23338731-23338750 None:intergenic 65.0%
! CGTGGTGGGGTGGTAGGGTT+TGG + chr4.3:23338725-23338744 None:intergenic 65.0%
! GAGCACGTGGTGGGGTGGTA+GGG + chr4.3:23338730-23338749 None:intergenic 65.0%
! GATGAGAGCACGTGGTGGGG+TGG + chr4.3:23338735-23338754 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 23338551 23339528 23338551 ID=MS.gene052529
chr4.3 mRNA 23338551 23339528 23338551 ID=MS.gene052529.t1;Parent=MS.gene052529
chr4.3 exon 23338551 23339528 23338551 ID=MS.gene052529.t1.exon1;Parent=MS.gene052529.t1
chr4.3 CDS 23338551 23339528 23338551 ID=cds.MS.gene052529.t1;Parent=MS.gene052529.t1
Gene Sequence

>MS.gene052529

ATGGAAGAAGAAGGAGAAAAACAACACCAAAAGCTTCTTCAATCTTCTTCATACCCTTACTACTGGGGCTACACACCAGAATCCGAATACTACAAACAACACAAAATCATATCCACAAAATCAACCTTCACAACACCAAGAAACCTAACCCTCTTCACAAGATCATGGCTTCCAAACCCTACCACCCCACCACGTGCTCTCATCTTCATGATCCATGGCTATGGCAACGACATCTCATGGACCTTCCAATCCACTCCAATCTTCCTTGCTCAAATGGGTTTCGCTTGTTTCTCTCTTGATCTTCAAGGACATGGTCATTCTCAAGGTTTAAAAGCTTTTGTTCCTAGCGTTGACCTTGTTGTACAAGATTGTCTCTCTTTCTTTAATTCTGTTAAGAAAGATTCAAACTTTGTTGGGTTGCCTTGTTTTTTATATGGTGAATCAATGGGTGGTGCTATTTGTCTTTTGATTCATTTTGCTGATCCAAAAGGGTTTCAAGGTGCTATTTTGGTAGCACCCATGTGTAAAATCTCTGATAAGGTTAGACCCAAATGGCCAATTCCTCAAATTTTAACTTTTTTAGCTAAATTCTTTCCAACTTTGCCTATTGTTCCTACACCTGATCTTTTGTATAAGTCTGTGAAAGTTGATCATAAGAAGGTTATTGCTCAAATGAATCCTTTGAGGTATAGAGGGAAACCTAGGTTAGGGACCGTGGTGGAGCTTTTGAAGGTTACTGATATTTTGAGTAGGAAGCTTTGTGATGTTGAACTACCCTTTATTGTGTTGCATGGTAGTGCTGATGTTGTTACTGATCCTGAGGTTAGTAGGGAATTGTATGAAGAAGCTAGGAGTGAAGATAAGAGTATTAAGGTGTTTGATGGGATGATGCATTCTTTGCTTTTTGGTGAAACTGATGAGAATGTTGAAATTGTTAGGAATGATATTTTGCAGTGGTTGAATGCTAGATGCAAGTGA
Protein sequence

>MS.gene052529.t1

MEEEGEKQHQKLLQSSSYPYYWGYTPESEYYKQHKIISTKSTFTTPRNLTLFTRSWLPNPTTPPRALIFMIHGYGNDISWTFQSTPIFLAQMGFACFSLDLQGHGHSQGLKAFVPSVDLVVQDCLSFFNSVKKDSNFVGLPCFLYGESMGGAICLLIHFADPKGFQGAILVAPMCKISDKVRPKWPIPQILTFLAKFFPTLPIVPTPDLLYKSVKVDHKKVIAQMNPLRYRGKPRLGTVVELLKVTDILSRKLCDVELPFIVLHGSADVVTDPEVSRELYEEARSEDKSIKVFDGMMHSLLFGETDENVEIVRNDILQWLNARCK