Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90834.t1 | XP_013470468.1 | 97.5 | 314 | 8 | 0 | 1 | 314 | 1 | 314 | 5.80E-176 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90834.t1 | Q9C942 | 36.5 | 274 | 173 | 1 | 21 | 293 | 50 | 323 | 2.0e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90834.t1 | A0A072VS52 | 97.5 | 314 | 8 | 0 | 1 | 314 | 1 | 314 | 4.2e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54469 | MS.gene90834 | PPI |
| MS.gene90834 | MS.gene39411 | PPI |
| MS.gene90834 | MS.gene92221 | PPI |
| MS.gene90834 | MS.gene32176 | PPI |
| MS.gene90834 | MS.gene052529 | PPI |
| MS.gene029108 | MS.gene90834 | PPI |
| MS.gene90834 | MS.gene80965 | PPI |
| MS.gene90834 | MS.gene029108 | PPI |
| MS.gene90834 | MS.gene33751 | PPI |
| MS.gene90834 | MS.gene75172 | PPI |
| MS.gene90834 | MS.gene76909 | PPI |
| MS.gene90834 | MS.gene066454 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90834.t1 | MTR_1g115535 | 97.452 | 314 | 8 | 0 | 1 | 314 | 1 | 314 | 0.0 | 642 |
| MS.gene90834.t1 | MTR_1g115535 | 97.444 | 313 | 8 | 0 | 2 | 314 | 6 | 318 | 0.0 | 640 |
| MS.gene90834.t1 | MTR_1g088470 | 53.310 | 287 | 134 | 0 | 8 | 294 | 6 | 292 | 1.05e-120 | 350 |
| MS.gene90834.t1 | MTR_7g108770 | 51.186 | 295 | 143 | 1 | 4 | 298 | 2 | 295 | 1.19e-115 | 337 |
| MS.gene90834.t1 | MTR_6g025610 | 47.260 | 292 | 154 | 0 | 7 | 298 | 41 | 332 | 1.59e-94 | 283 |
| MS.gene90834.t1 | MTR_6g018490 | 46.918 | 292 | 155 | 0 | 7 | 298 | 51 | 342 | 3.03e-94 | 283 |
| MS.gene90834.t1 | MTR_5g056550 | 46.528 | 288 | 153 | 1 | 7 | 293 | 104 | 391 | 4.56e-91 | 276 |
| MS.gene90834.t1 | MTR_7g007260 | 45.455 | 286 | 156 | 0 | 7 | 292 | 52 | 337 | 2.07e-87 | 266 |
| MS.gene90834.t1 | MTR_1g110670 | 43.369 | 279 | 157 | 1 | 16 | 293 | 79 | 357 | 6.00e-84 | 257 |
| MS.gene90834.t1 | MTR_6g084420 | 42.321 | 293 | 168 | 1 | 7 | 298 | 51 | 343 | 8.18e-83 | 254 |
| MS.gene90834.t1 | MTR_4g089170 | 42.321 | 293 | 168 | 1 | 4 | 295 | 33 | 325 | 1.02e-77 | 240 |
| MS.gene90834.t1 | MTR_7g007260 | 42.308 | 286 | 152 | 1 | 7 | 292 | 52 | 324 | 2.39e-75 | 234 |
| MS.gene90834.t1 | MTR_5g056550 | 42.014 | 288 | 133 | 2 | 7 | 293 | 104 | 358 | 5.37e-75 | 234 |
| MS.gene90834.t1 | MTR_7g007260 | 42.160 | 287 | 152 | 2 | 7 | 292 | 52 | 325 | 4.06e-74 | 231 |
| MS.gene90834.t1 | MTR_1g095110 | 38.776 | 294 | 171 | 6 | 7 | 295 | 28 | 317 | 2.66e-63 | 203 |
| MS.gene90834.t1 | MTR_4g127220 | 36.861 | 274 | 172 | 1 | 21 | 293 | 41 | 314 | 8.63e-58 | 189 |
| MS.gene90834.t1 | MTR_5g056550 | 44.056 | 143 | 79 | 1 | 7 | 148 | 104 | 246 | 5.75e-39 | 139 |
| MS.gene90834.t1 | MTR_5g056550 | 44.366 | 142 | 78 | 1 | 7 | 147 | 104 | 245 | 1.73e-38 | 137 |
| MS.gene90834.t1 | MTR_6g071475 | 31.071 | 280 | 182 | 6 | 16 | 293 | 120 | 390 | 1.43e-32 | 124 |
| MS.gene90834.t1 | MTR_3g109870 | 28.374 | 289 | 177 | 9 | 8 | 293 | 93 | 354 | 4.27e-24 | 100 |
| MS.gene90834.t1 | MTR_1g110680 | 42.553 | 94 | 50 | 2 | 200 | 293 | 15 | 104 | 1.47e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90834.t1 | AT2G39420 | 64.952 | 311 | 108 | 1 | 1 | 310 | 1 | 311 | 3.43e-160 | 449 |
| MS.gene90834.t1 | AT2G39410 | 61.093 | 311 | 120 | 1 | 1 | 310 | 1 | 311 | 4.20e-153 | 431 |
| MS.gene90834.t1 | AT2G39400 | 62.013 | 308 | 117 | 0 | 7 | 314 | 2 | 309 | 5.73e-150 | 423 |
| MS.gene90834.t1 | AT3G55180 | 60.984 | 305 | 118 | 1 | 7 | 310 | 2 | 306 | 1.15e-145 | 412 |
| MS.gene90834.t1 | AT3G55190 | 55.208 | 288 | 128 | 1 | 7 | 293 | 8 | 295 | 1.81e-122 | 354 |
| MS.gene90834.t1 | AT3G62860 | 52.431 | 288 | 136 | 1 | 7 | 294 | 6 | 292 | 1.77e-119 | 347 |
| MS.gene90834.t1 | AT2G47630 | 51.546 | 291 | 140 | 1 | 5 | 294 | 4 | 294 | 1.35e-118 | 345 |
| MS.gene90834.t1 | AT2G39400 | 62.667 | 225 | 83 | 1 | 7 | 231 | 2 | 225 | 1.44e-106 | 311 |
| MS.gene90834.t1 | AT3G62860 | 53.414 | 249 | 116 | 0 | 46 | 294 | 1 | 249 | 1.41e-102 | 303 |
| MS.gene90834.t1 | AT2G47630 | 51.807 | 249 | 120 | 0 | 46 | 294 | 1 | 249 | 8.82e-100 | 296 |
| MS.gene90834.t1 | AT2G47630 | 50.196 | 255 | 120 | 1 | 40 | 294 | 22 | 269 | 1.83e-97 | 291 |
| MS.gene90834.t1 | AT5G16120 | 45.361 | 291 | 159 | 0 | 4 | 294 | 50 | 340 | 1.34e-91 | 276 |
| MS.gene90834.t1 | AT5G16120 | 45.361 | 291 | 159 | 0 | 4 | 294 | 50 | 340 | 1.34e-91 | 276 |
| MS.gene90834.t1 | AT5G16120 | 45.361 | 291 | 159 | 0 | 4 | 294 | 82 | 372 | 3.29e-91 | 276 |
| MS.gene90834.t1 | AT5G16120 | 45.361 | 291 | 159 | 0 | 4 | 294 | 68 | 358 | 3.77e-91 | 276 |
| MS.gene90834.t1 | AT1G11090 | 44.330 | 291 | 161 | 1 | 13 | 302 | 33 | 323 | 7.42e-84 | 256 |
| MS.gene90834.t1 | AT1G77420 | 42.361 | 288 | 165 | 1 | 7 | 293 | 91 | 378 | 3.95e-80 | 248 |
| MS.gene90834.t1 | AT5G14980 | 37.755 | 294 | 181 | 2 | 3 | 295 | 25 | 317 | 1.16e-70 | 222 |
| MS.gene90834.t1 | AT5G19290 | 33.898 | 295 | 192 | 3 | 3 | 295 | 25 | 318 | 3.15e-59 | 193 |
| MS.gene90834.t1 | AT1G52760 | 36.525 | 282 | 176 | 3 | 21 | 300 | 50 | 330 | 2.79e-57 | 188 |
| MS.gene90834.t1 | AT2G39410 | 61.165 | 103 | 39 | 1 | 1 | 102 | 1 | 103 | 1.27e-43 | 146 |
| MS.gene90834.t1 | AT1G73480 | 34.875 | 281 | 166 | 8 | 18 | 293 | 194 | 462 | 1.03e-40 | 147 |
| MS.gene90834.t1 | AT1G18360 | 32.302 | 291 | 177 | 10 | 11 | 293 | 103 | 381 | 1.37e-34 | 130 |
| MS.gene90834.t1 | AT5G11650 | 32.500 | 280 | 174 | 8 | 18 | 293 | 110 | 378 | 4.98e-34 | 128 |
Find 61 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGGGACGGTGCTATTT+TGG | 0.211717 | 1.4:-87744816 | MS.gene90834:CDS |
| CACATGAAGATTAATGCTTT+TGG | 0.262833 | 1.4:+87745423 | None:intergenic |
| CTCATCTTCTTCTTATTCTC+TGG | 0.297099 | 1.4:+87744902 | None:intergenic |
| TACCACATATGCTGCTAAAA+TGG | 0.299979 | 1.4:+87745152 | None:intergenic |
| TGGTGAGCCACCTGAAAATT+TGG | 0.332385 | 1.4:-87740355 | MS.gene90834:CDS |
| AAGAAGATGAGGTATTTGTT+AGG | 0.361063 | 1.4:-87744890 | MS.gene90834:CDS |
| ATGCAACGTCAATGATATCT+TGG | 0.366862 | 1.4:+87740778 | None:intergenic |
| ATAGCACCGTCCCAATATTC+TGG | 0.371738 | 1.4:+87744821 | None:intergenic |
| TATACCTGTTGTCTGACTTC+GGG | 0.372481 | 1.4:+87740747 | None:intergenic |
| GAAGGACATGGAAAATCATA+TGG | 0.374514 | 1.4:-87745226 | MS.gene90834:CDS |
| GGTAAACCTCGTTTGAGAAC+AGG | 0.406676 | 1.4:-87740567 | MS.gene90834:CDS |
| ATACGCATCACAAATGCGTT+TGG | 0.426579 | 1.4:+87740849 | None:intergenic |
| AATAAACCATGCCACATTCC+AGG | 0.432223 | 1.4:+87740381 | None:intergenic |
| AATGGTGGATATGCAGTATA+TGG | 0.439539 | 1.4:-87745259 | MS.gene90834:CDS |
| GAACAGGTTATGAACTTAGC+AGG | 0.442798 | 1.4:-87740551 | MS.gene90834:CDS |
| TTCGTTTGCAGGAATCCAAC+TGG | 0.447472 | 1.4:+87745449 | None:intergenic |
| ATGTGGCATGGTTTATTGTA+TGG | 0.464306 | 1.4:-87740375 | MS.gene90834:CDS |
| ATATACCTGTTGTCTGACTT+CGG | 0.472673 | 1.4:+87740746 | None:intergenic |
| GTATTTGTTAGGAGAATCAA+TGG | 0.473307 | 1.4:-87744879 | MS.gene90834:CDS |
| CAGGGTTGCTACACAAATTG+AGG | 0.478781 | 1.4:-87740532 | MS.gene90834:CDS |
| CGTCAATGATATCTTGGGTT+GGG | 0.478954 | 1.4:+87740784 | None:intergenic |
| ATTAAATTACTTACTGTCCA+TGG | 0.494516 | 1.4:+87745371 | None:intergenic |
| TGTAATTGTTTGCTCACTGA+TGG | 0.495340 | 1.4:+87740444 | None:intergenic |
| CATGGTGATGCTGCATTCCA+TGG | 0.495721 | 1.4:+87745389 | None:intergenic |
| GTTGGGACTATTTGCCATGT+GGG | 0.500420 | 1.4:+87740801 | None:intergenic |
| TTCACGAGGAATGAAGCTAT+TGG | 0.503313 | 1.4:-87745475 | MS.gene90834:CDS |
| GCAAATCAATACTGCTTCAA+AGG | 0.506460 | 1.4:-87740588 | MS.gene90834:CDS |
| AGTCCCCGAAGTCAGACAAC+AGG | 0.533737 | 1.4:-87740751 | MS.gene90834:intron |
| GCATTAATCTTCATGTGTCA+TGG | 0.535158 | 1.4:-87745417 | MS.gene90834:CDS |
| CAGTGTCTTATCTTTGCTTG+AGG | 0.536029 | 1.4:+87740413 | None:intergenic |
| ATAAACCATGCCACATTCCA+GGG | 0.536826 | 1.4:+87740382 | None:intergenic |
| GGAAAATCATATGGGTTACC+TGG | 0.550368 | 1.4:-87745217 | MS.gene90834:CDS |
| TGAAGCTATTGGCAACCAGT+TGG | 0.556889 | 1.4:-87745464 | MS.gene90834:CDS |
| GAGCAAACAATTACATGAAG+TGG | 0.559648 | 1.4:-87740436 | MS.gene90834:CDS |
| CAGAGAATAAGAAGAAGATG+AGG | 0.560462 | 1.4:-87744901 | MS.gene90834:CDS |
| TTTGGCTGCACCAATGTGCA+AGG | 0.567302 | 1.4:-87744798 | MS.gene90834:intron |
| TGCAACGTCAATGATATCTT+GGG | 0.571424 | 1.4:+87740779 | None:intergenic |
| ACAGCAAGAAGACTTGCAAA+TGG | 0.575144 | 1.4:-87745277 | MS.gene90834:CDS |
| GGTTGGGACTATTTGCCATG+TGG | 0.578579 | 1.4:+87740800 | None:intergenic |
| ACGTCAATGATATCTTGGGT+TGG | 0.580610 | 1.4:+87740783 | None:intergenic |
| GGCATAGATTATGAAGGACA+TGG | 0.585316 | 1.4:-87745238 | MS.gene90834:CDS |
| TGAAATTATACCCTGGAATG+TGG | 0.585853 | 1.4:-87740392 | MS.gene90834:CDS |
| AGAATCAATGGGAGGAGCTG+TGG | 0.588110 | 1.4:-87744867 | MS.gene90834:CDS |
| TCAAAATTCTTAACAAGACC+AGG | 0.588245 | 1.4:+87745199 | None:intergenic |
| TTATACCCTGGAATGTGGCA+TGG | 0.590145 | 1.4:-87740387 | MS.gene90834:CDS |
| AACAGGTTATGAACTTAGCA+GGG | 0.592891 | 1.4:-87740550 | MS.gene90834:CDS |
| GCAAGAAGACTTGCAAATGG+TGG | 0.599106 | 1.4:-87745274 | MS.gene90834:CDS |
| ATACCTGTTGTCTGACTTCG+GGG | 0.600788 | 1.4:+87740748 | None:intergenic |
| GTATATGGCATAGATTATGA+AGG | 0.603827 | 1.4:-87745244 | MS.gene90834:CDS |
| TATTTGTTAGGAGAATCAAT+GGG | 0.610159 | 1.4:-87744878 | MS.gene90834:CDS |
| AAGGACATGGAAAATCATAT+GGG | 0.610292 | 1.4:-87745225 | MS.gene90834:CDS |
| CACATATGCTGCTAAAATGG+CGG | 0.616640 | 1.4:+87745155 | None:intergenic |
| GCAAAGCTAACCTTGCACAT+TGG | 0.625763 | 1.4:+87744788 | None:intergenic |
| AACTGACATCAAATACGAAG+AGG | 0.629312 | 1.4:-87745675 | MS.gene90834:intron |
| TCATAACCTGTTCTCAAACG+AGG | 0.632056 | 1.4:+87740561 | None:intergenic |
| TAAGCAAAGTTGCTCCCACA+TGG | 0.635188 | 1.4:-87740815 | MS.gene90834:CDS |
| CATGGAATGCAGCATCACCA+TGG | 0.662101 | 1.4:-87745388 | MS.gene90834:CDS |
| TTGTTAGGAGAATCAATGGG+AGG | 0.667244 | 1.4:-87744875 | MS.gene90834:CDS |
| CATGTGTCATGGATATGCCA+TGG | 0.671110 | 1.4:-87745406 | MS.gene90834:CDS |
| AAGACACTGAAATTATACCC+TGG | 0.682010 | 1.4:-87740399 | MS.gene90834:CDS |
| GATTTCGTATTGAATTCACG+AGG | 0.718373 | 1.4:-87745489 | MS.gene90834:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTATCTTATTATAAATA+TGG | - | chr1.4:87743246-87743265 | MS.gene90834:intron | 10.0% |
| !! | ATTATTAGATAATAATGTTT+GGG | + | chr1.4:87741478-87741497 | None:intergenic | 10.0% |
| !! | CTAAAAGTTTATATATAAAT+GGG | + | chr1.4:87744262-87744281 | None:intergenic | 10.0% |
| !! | TAATGATATAAAATTATTTG+TGG | + | chr1.4:87742828-87742847 | None:intergenic | 10.0% |
| !! | TTGAATGAAATTAATTTATA+GGG | + | chr1.4:87742201-87742220 | None:intergenic | 10.0% |
| !!! | AAAAAACTTTTTCATTAAAT+TGG | + | chr1.4:87744318-87744337 | None:intergenic | 10.0% |
| !!! | CAATTATTTTTATTCAAAAA+AGG | - | chr1.4:87743125-87743144 | MS.gene90834:intron | 10.0% |
| !! | AAGAATATCTAAGAAATAAT+AGG | - | chr1.4:87743381-87743400 | MS.gene90834:intron | 15.0% |
| !! | AATAAATGAACAGTAAAATA+CGG | + | chr1.4:87743520-87743539 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr1.4:87742127-87742146 | MS.gene90834:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr1.4:87742146-87742127 | None:intergenic | 15.0% |
| !! | ACTATCAATACATATAAATT+AGG | - | chr1.4:87741638-87741657 | MS.gene90834:intron | 15.0% |
| !! | AGAATATCTAAGAAATAATA+GGG | - | chr1.4:87743382-87743401 | MS.gene90834:intron | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr1.4:87741935-87741954 | MS.gene90834:intron | 15.0% |
| !! | ATGAATGAATGAATTTATAT+AGG | - | chr1.4:87740731-87740750 | MS.gene90834:intron | 15.0% |
| !! | CCTAAAAGTTTATATATAAA+TGG | + | chr1.4:87744263-87744282 | None:intergenic | 15.0% |
| !! | CTATCAATACATATAAATTA+GGG | - | chr1.4:87741639-87741658 | MS.gene90834:intron | 15.0% |
| !! | GAAAAAAAATAACAAACATT+AGG | + | chr1.4:87740312-87740331 | None:intergenic | 15.0% |
| !! | GACATGATTATTAATTTATT+AGG | - | chr1.4:87740493-87740512 | MS.gene90834:CDS | 15.0% |
| !! | GATTATTAGATAATAATGTT+TGG | + | chr1.4:87741479-87741498 | None:intergenic | 15.0% |
| !! | GTTATAGATTTATATATTGA+AGG | - | chr1.4:87745395-87745414 | MS.gene90834:CDS | 15.0% |
| !! | GTTGAATGAAATTAATTTAT+AGG | + | chr1.4:87742202-87742221 | None:intergenic | 15.0% |
| !! | TTTAATGAATAATTTATGCA+TGG | - | chr1.4:87745007-87745026 | MS.gene90834:intron | 15.0% |
| !! | TTTATCTTAATCAAAAGAAA+CGG | - | chr1.4:87740461-87740480 | MS.gene90834:CDS | 15.0% |
| !!! | ATCAATTGTTTCTTATAATA+AGG | - | chr1.4:87743303-87743322 | MS.gene90834:intron | 15.0% |
| !!! | CCATTTATATATAAACTTTT+AGG | - | chr1.4:87744260-87744279 | MS.gene90834:intron | 15.0% |
| !!! | TAAGAAACAATTGATTTTTT+TGG | + | chr1.4:87743298-87743317 | None:intergenic | 15.0% |
| !!! | TTCTGTTTTTTATTTTATTC+AGG | - | chr1.4:87740521-87740540 | MS.gene90834:CDS | 15.0% |
| !!! | TTTTTCTAATAATGAAAGAA+TGG | + | chr1.4:87741341-87741360 | None:intergenic | 15.0% |
| !! | AAAAAGGAACAAATACAAAA+AGG | - | chr1.4:87743141-87743160 | MS.gene90834:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr1.4:87742065-87742084 | MS.gene90834:intron | 20.0% |
| !! | AAATAAATAAGCTATGTCAT+GGG | + | chr1.4:87741004-87741023 | None:intergenic | 20.0% |
| !! | AACATTAGGAAAACTAATTA+CGG | + | chr1.4:87740298-87740317 | None:intergenic | 20.0% |
| !! | ACATGTTACATGTTTATTAT+AGG | - | chr1.4:87740436-87740455 | MS.gene90834:CDS | 20.0% |
| !! | AGATTATAATCTAATGTCTA+TGG | + | chr1.4:87741524-87741543 | None:intergenic | 20.0% |
| !! | ATCTTTATGTTTAATTGTGA+TGG | + | chr1.4:87742242-87742261 | None:intergenic | 20.0% |
| !! | ATGGTGTTTATTAAGTATTA+CGG | + | chr1.4:87742763-87742782 | None:intergenic | 20.0% |
| !! | GAGAAAAGGAAAAAAAAATA+TGG | + | chr1.4:87743543-87743562 | None:intergenic | 20.0% |
| !! | GATTATTAATTTATTAGGCA+TGG | - | chr1.4:87740498-87740517 | MS.gene90834:CDS | 20.0% |
| !! | GCATAAAAAGTTGAATTTAA+TGG | + | chr1.4:87740950-87740969 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr1.4:87742064-87742083 | MS.gene90834:intron | 20.0% |
| !! | TATTCTACAAAAAAAGATGT+TGG | + | chr1.4:87740400-87740419 | None:intergenic | 20.0% |
| !! | TATTTAACACCACATTAAAT+AGG | + | chr1.4:87742983-87743002 | None:intergenic | 20.0% |
| !! | TATTTATGAATTGCAGATTA+GGG | - | chr1.4:87745422-87745441 | MS.gene90834:CDS | 20.0% |
| !! | TTATGTTTAATACAGTTGTT+TGG | - | chr1.4:87744954-87744973 | MS.gene90834:intron | 20.0% |
| !! | TTATTTATGAATTGCAGATT+AGG | - | chr1.4:87745421-87745440 | MS.gene90834:CDS | 20.0% |
| !!! | AATAATTTCTTTTAAGGTGT+TGG | + | chr1.4:87742796-87742815 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr1.4:87741970-87741989 | MS.gene90834:intron | 20.0% |
| !!! | AGTAGAAGATTAGTATTTTA+TGG | + | chr1.4:87744591-87744610 | None:intergenic | 20.0% |
| !!! | ATAATTTCTTTTAAGGTGTT+GGG | + | chr1.4:87742795-87742814 | None:intergenic | 20.0% |
| !!! | ATTCTTTTACATTGATTGAT+AGG | + | chr1.4:87743367-87743386 | None:intergenic | 20.0% |
| !!! | CACTATTAATACTTTTTTTG+AGG | + | chr1.4:87745355-87745374 | None:intergenic | 20.0% |
| !!! | CATATTTAAATTTTGACGTA+AGG | + | chr1.4:87744474-87744493 | None:intergenic | 20.0% |
| !!! | GTAGAAGATTAGTATTTTAT+GGG | + | chr1.4:87744590-87744609 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | + | chr1.4:87743204-87743223 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | - | chr1.4:87743209-87743228 | MS.gene90834:intron | 20.0% |
| !!! | TATTCAAAGACATTTTCAAT+TGG | - | chr1.4:87745706-87745725 | MS.gene90834:intron | 20.0% |
| !!! | TATTTAATGTGGTGTTAAAT+AGG | - | chr1.4:87742982-87743001 | MS.gene90834:intron | 20.0% |
| !!! | TCATAGATTGTTTTTTATAG+TGG | + | chr1.4:87742565-87742584 | None:intergenic | 20.0% |
| !!! | TCTTGTTATATACTTGAATA+TGG | - | chr1.4:87742304-87742323 | MS.gene90834:intron | 20.0% |
| !!! | TGTATTTTGAGAGTAATAAT+GGG | + | chr1.4:87744895-87744914 | None:intergenic | 20.0% |
| !!! | TTTTAGTTTGAGAAATGATA+AGG | + | chr1.4:87744200-87744219 | None:intergenic | 20.0% |
| !!! | TTTTCTTAATTTTGTTATGC+AGG | - | chr1.4:87740327-87740346 | MS.gene90834:CDS | 20.0% |
| ! | AAATTCCAACTAAATATGAG+GGG | + | chr1.4:87744102-87744121 | None:intergenic | 25.0% |
| ! | AAGTAAGGACTAAATTTACA+AGG | + | chr1.4:87741698-87741717 | None:intergenic | 25.0% |
| ! | AATAAATAAGCTATGTCATG+GGG | + | chr1.4:87741003-87741022 | None:intergenic | 25.0% |
| ! | AATTGGAAATCAATTAGACT+AGG | + | chr1.4:87744301-87744320 | None:intergenic | 25.0% |
| ! | ACTTATTACTGTATATGTGA+TGG | + | chr1.4:87741431-87741450 | None:intergenic | 25.0% |
| ! | AGATTACTATGCACTTTATA+TGG | + | chr1.4:87744370-87744389 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr1.4:87742098-87742117 | MS.gene90834:intron | 25.0% |
| ! | ATAGCTTATTTATTTGTCCT+TGG | - | chr1.4:87741009-87741028 | MS.gene90834:intron | 25.0% |
| ! | ATTAAATTACTTACTGTCCA+TGG | + | chr1.4:87740664-87740683 | None:intergenic | 25.0% |
| ! | CAAATAAATAAGCTATGTCA+TGG | + | chr1.4:87741005-87741024 | None:intergenic | 25.0% |
| ! | CAAGAAGCTACAAAATATAA+CGG | + | chr1.4:87742397-87742416 | None:intergenic | 25.0% |
| ! | CATTTCACCTATTAAATCAA+GGG | + | chr1.4:87742629-87742648 | None:intergenic | 25.0% |
| ! | GAAATTCCAACTAAATATGA+GGG | + | chr1.4:87744103-87744122 | None:intergenic | 25.0% |
| ! | GACTTTGAGCTAAAAAAAAA+AGG | - | chr1.4:87742651-87742670 | MS.gene90834:intron | 25.0% |
| ! | GTAATTTCCTTCAAAAACAA+TGG | + | chr1.4:87744133-87744152 | None:intergenic | 25.0% |
| ! | GTTATATACTTGAATATGGA+GGG | - | chr1.4:87742308-87742327 | MS.gene90834:intron | 25.0% |
| ! | TAATGAAAGAATGGTATGTA+TGG | + | chr1.4:87741332-87741351 | None:intergenic | 25.0% |
| ! | TCACCATGTAAAATCAAAAA+AGG | + | chr1.4:87745549-87745568 | None:intergenic | 25.0% |
| ! | TGAAATATGTATAGCATGTT+TGG | + | chr1.4:87742473-87742492 | None:intergenic | 25.0% |
| ! | TGAAATTCCAACTAAATATG+AGG | + | chr1.4:87744104-87744123 | None:intergenic | 25.0% |
| ! | TGTACAATCTGTTTCATTTA+TGG | + | chr1.4:87743905-87743924 | None:intergenic | 25.0% |
| ! | TGTTATATACTTGAATATGG+AGG | - | chr1.4:87742307-87742326 | MS.gene90834:intron | 25.0% |
| ! | TTATATACTTGAATATGGAG+GGG | - | chr1.4:87742309-87742328 | MS.gene90834:intron | 25.0% |
| ! | TTGGCTAAATAAGATATGAA+TGG | - | chr1.4:87741028-87741047 | MS.gene90834:intron | 25.0% |
| !! | AATACAATCTCCAAATTTTC+AGG | + | chr1.4:87745690-87745709 | None:intergenic | 25.0% |
| !! | ATTAATAAGTCACTTTCTGA+AGG | + | chr1.4:87744696-87744715 | None:intergenic | 25.0% |
| !! | ATTCATATCTTATTTAGCCA+AGG | + | chr1.4:87741029-87741048 | None:intergenic | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | + | chr1.4:87743199-87743218 | None:intergenic | 25.0% |
| !! | TATTTGTTAGGAGAATCAAT+GGG | - | chr1.4:87741154-87741173 | MS.gene90834:intron | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | - | chr1.4:87743308-87743327 | MS.gene90834:intron | 25.0% |
| !!! | AAATATGCCATTGTTTTTGA+AGG | - | chr1.4:87744123-87744142 | MS.gene90834:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr1.4:87741775-87741794 | None:intergenic | 25.0% |
| !!! | CTTCCTTTTTTGATTTTACA+TGG | - | chr1.4:87745543-87745562 | MS.gene90834:intron | 25.0% |
| !!! | GTGTATTTTGAGAGTAATAA+TGG | + | chr1.4:87744896-87744915 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr1.4:87741776-87741795 | None:intergenic | 25.0% |
| !!! | TCAATTAGACTAGGTTTTAT+AGG | + | chr1.4:87744292-87744311 | None:intergenic | 25.0% |
| !!! | TTTTTTGATTTTACATGGTG+AGG | - | chr1.4:87745548-87745567 | MS.gene90834:intron | 25.0% |
| AAATACCCCTCATATTTAGT+TGG | - | chr1.4:87744094-87744113 | MS.gene90834:intron | 30.0% | |
| AAGAGAGATTAACAGAAAAG+AGG | + | chr1.4:87743616-87743635 | None:intergenic | 30.0% | |
| AAGGACATGGAAAATCATAT+GGG | - | chr1.4:87740807-87740826 | MS.gene90834:CDS | 30.0% | |
| ATCAAAGTAAACTCACGTTT+AGG | - | chr1.4:87742368-87742387 | MS.gene90834:intron | 30.0% | |
| ATTGTGTGGAGTATAATACA+TGG | + | chr1.4:87742954-87742973 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr1.4:87741838-87741857 | MS.gene90834:intron | 30.0% | |
| CAATTTAAGCACCCAATTTA+GGG | + | chr1.4:87742712-87742731 | None:intergenic | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr1.4:87742097-87742116 | MS.gene90834:intron | 30.0% | |
| CCATTTCACCTATTAAATCA+AGG | + | chr1.4:87742630-87742649 | None:intergenic | 30.0% | |
| CCTGTTCGAATATAATCATA+CGG | - | chr1.4:87744563-87744582 | MS.gene90834:intron | 30.0% | |
| CCTTGATTTAATAGGTGAAA+TGG | - | chr1.4:87742627-87742646 | MS.gene90834:intron | 30.0% | |
| GCAATTTGAATAAAGTCACA+CGG | - | chr1.4:87744732-87744751 | MS.gene90834:intron | 30.0% | |
| GCACATTATAGTATATGATG+TGG | + | chr1.4:87741308-87741327 | None:intergenic | 30.0% | |
| GTATATGGCATAGATTATGA+AGG | - | chr1.4:87740788-87740807 | MS.gene90834:CDS | 30.0% | |
| GTATTATACTCCACACAATA+AGG | - | chr1.4:87742955-87742974 | MS.gene90834:intron | 30.0% | |
| TAAAAAAAAAAGGAGAGACG+TGG | - | chr1.4:87742661-87742680 | MS.gene90834:intron | 30.0% | |
| TAAACTCAGTCGTAAAAAGA+AGG | + | chr1.4:87744991-87745010 | None:intergenic | 30.0% | |
| TCAAAATTCTTAACAAGACC+AGG | + | chr1.4:87740836-87740855 | None:intergenic | 30.0% | |
| TCAATTTAAGCACCCAATTT+AGG | + | chr1.4:87742713-87742732 | None:intergenic | 30.0% | |
| TCATTTACATGATCTTGTCA+CGG | - | chr1.4:87742493-87742512 | MS.gene90834:intron | 30.0% | |
| TTGTGTGGAGTATAATACAT+GGG | + | chr1.4:87742953-87742972 | None:intergenic | 30.0% | |
| ! | AAGAAGATGAGGTATTTGTT+AGG | - | chr1.4:87741142-87741161 | MS.gene90834:intron | 30.0% |
| ! | AATAAGGTGCCTATTTAATG+TGG | - | chr1.4:87742971-87742990 | MS.gene90834:intron | 30.0% |
| ! | AGACATTTTCAATTGGATAG+AGG | - | chr1.4:87745713-87745732 | MS.gene90834:intron | 30.0% |
| ! | CACATGAAGATTAATGCTTT+TGG | + | chr1.4:87740612-87740631 | None:intergenic | 30.0% |
| ! | GTATTTGTTAGGAGAATCAA+TGG | - | chr1.4:87741153-87741172 | MS.gene90834:intron | 30.0% |
| ! | TTGTTGATGTACTTGCTAAA+CGG | - | chr1.4:87744925-87744944 | MS.gene90834:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1.4:87741682-87741701 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1.4:87741683-87741702 | None:intergenic | 30.0% |
| AAAAAGCCAGAATATTGGGA+CGG | - | chr1.4:87741205-87741224 | MS.gene90834:intron | 35.0% | |
| AACAGGTTATGAACTTAGCA+GGG | - | chr1.4:87745482-87745501 | MS.gene90834:CDS | 35.0% | |
| AACTGACATCAAATACGAAG+AGG | - | chr1.4:87740357-87740376 | MS.gene90834:CDS | 35.0% | |
| AAGAAAGAAACGTGCAAACA+CGG | + | chr1.4:87741378-87741397 | None:intergenic | 35.0% | |
| AAGACACTGAAATTATACCC+TGG | - | chr1.4:87745633-87745652 | MS.gene90834:intron | 35.0% | |
| AAGAGGAAAACATTGTTCGT+TGG | + | chr1.4:87743599-87743618 | None:intergenic | 35.0% | |
| AAGTAAGGACTAAACTCACA+AGG | - | chr1.4:87742142-87742161 | MS.gene90834:intron | 35.0% | |
| ACAACTGAACACCCTAAATT+GGG | - | chr1.4:87742698-87742717 | MS.gene90834:intron | 35.0% | |
| ACGTGATATTGAGATAACGA+AGG | + | chr1.4:87744655-87744674 | None:intergenic | 35.0% | |
| ATATACAGTGATGTCGTGAT+CGG | + | chr1.4:87743758-87743777 | None:intergenic | 35.0% | |
| ATATACCTGTTGTCTGACTT+CGG | + | chr1.4:87745289-87745308 | None:intergenic | 35.0% | |
| ATCTCAGCCCTTGATTTAAT+AGG | - | chr1.4:87742619-87742638 | MS.gene90834:intron | 35.0% | |
| ATGCAAAATGAAGACAGAGA+TGG | - | chr1.4:87742897-87742916 | MS.gene90834:intron | 35.0% | |
| ATGCAACGTCAATGATATCT+TGG | + | chr1.4:87745257-87745276 | None:intergenic | 35.0% | |
| ATGTGGCATGGTTTATTGTA+TGG | - | chr1.4:87745657-87745676 | MS.gene90834:intron | 35.0% | |
| CAACACAAATACGACATCAA+GGG | + | chr1.4:87744163-87744182 | None:intergenic | 35.0% | |
| CAGACACACATGTGAAATAT+GGG | + | chr1.4:87743422-87743441 | None:intergenic | 35.0% | |
| CAGAGAATAAGAAGAAGATG+AGG | - | chr1.4:87741131-87741150 | MS.gene90834:intron | 35.0% | |
| CCGTATGATTATATTCGAAC+AGG | + | chr1.4:87744566-87744585 | None:intergenic | 35.0% | |
| CTCATCTTCTTCTTATTCTC+TGG | + | chr1.4:87741133-87741152 | None:intergenic | 35.0% | |
| GAAGGACATGGAAAATCATA+TGG | - | chr1.4:87740806-87740825 | MS.gene90834:CDS | 35.0% | |
| GAGCAAACAATTACATGAAG+TGG | - | chr1.4:87745596-87745615 | MS.gene90834:intron | 35.0% | |
| GATTTCGTATTGAATTCACG+AGG | - | chr1.4:87740543-87740562 | MS.gene90834:CDS | 35.0% | |
| GCAAATCAATACTGCTTCAA+AGG | - | chr1.4:87745444-87745463 | MS.gene90834:CDS | 35.0% | |
| GCATTAATCTTCATGTGTCA+TGG | - | chr1.4:87740615-87740634 | MS.gene90834:intron | 35.0% | |
| TAAATAGGCACCTTATTGTG+TGG | + | chr1.4:87742968-87742987 | None:intergenic | 35.0% | |
| TACCACATATGCTGCTAAAA+TGG | + | chr1.4:87740883-87740902 | None:intergenic | 35.0% | |
| TCAGACACACATGTGAAATA+TGG | + | chr1.4:87743423-87743442 | None:intergenic | 35.0% | |
| TGAAATTATACCCTGGAATG+TGG | - | chr1.4:87745640-87745659 | MS.gene90834:intron | 35.0% | |
| TGCAACGTCAATGATATCTT+GGG | + | chr1.4:87745256-87745275 | None:intergenic | 35.0% | |
| TGTAATTGTTTGCTCACTGA+TGG | + | chr1.4:87745591-87745610 | None:intergenic | 35.0% | |
| TTAAATCAAGGGCTGAGATT+TGG | + | chr1.4:87742618-87742637 | None:intergenic | 35.0% | |
| TTACGGTAAAATGAGTGATG+TGG | + | chr1.4:87742746-87742765 | None:intergenic | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | chr1.4:87743312-87743331 | MS.gene90834:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr1.4:87743331-87743312 | None:intergenic | 35.0% | |
| TTCTTATTGAATACTCCCTC+CGG | + | chr1.4:87743330-87743349 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr1.4:87743311-87743330 | MS.gene90834:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr1.4:87743330-87743311 | None:intergenic | 35.0% | |
| ! | ATCTCTGTCTTCATTTTGCA+TGG | + | chr1.4:87742898-87742917 | None:intergenic | 35.0% |
| ! | CTTCTACTATGATAACGAGA+AGG | - | chr1.4:87744603-87744622 | MS.gene90834:intron | 35.0% |
| ! | TATCCTCACATTTTCTTCTC+AGG | + | chr1.4:87743054-87743073 | None:intergenic | 35.0% |
| ! | TCTCTGTCTTCATTTTGCAT+GGG | + | chr1.4:87742897-87742916 | None:intergenic | 35.0% |
| !! | AATGGTGGATATGCAGTATA+TGG | - | chr1.4:87740773-87740792 | MS.gene90834:CDS | 35.0% |
| !! | ACAATCTCCAAATTTTCAGG+TGG | + | chr1.4:87745687-87745706 | None:intergenic | 35.0% |
| !! | CACAAGGTCGCTATTTTATA+GGG | - | chr1.4:87742158-87742177 | MS.gene90834:intron | 35.0% |
| !! | TCACAAGGTCGCTATTTTAT+AGG | - | chr1.4:87742157-87742176 | MS.gene90834:intron | 35.0% |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | - | chr1.4:87741973-87741992 | MS.gene90834:intron | 35.0% |
| AAACGAGATCTGAATAGCAG+CGG | - | chr1.4:87743844-87743863 | MS.gene90834:intron | 40.0% | |
| AATAAACCATGCCACATTCC+AGG | + | chr1.4:87745654-87745673 | None:intergenic | 40.0% | |
| ACAGCAAGAAGACTTGCAAA+TGG | - | chr1.4:87740755-87740774 | MS.gene90834:CDS | 40.0% | |
| ACCGGAAAAAGCCAGAATAT+TGG | - | chr1.4:87741200-87741219 | MS.gene90834:intron | 40.0% | |
| ACGTCAATGATATCTTGGGT+TGG | + | chr1.4:87745252-87745271 | None:intergenic | 40.0% | |
| AGTACAGCGCACATCAAATT+TGG | - | chr1.4:87741451-87741470 | MS.gene90834:intron | 40.0% | |
| ATAAACCATGCCACATTCCA+GGG | + | chr1.4:87745653-87745672 | None:intergenic | 40.0% | |
| ATACGCATCACAAATGCGTT+TGG | + | chr1.4:87745186-87745205 | None:intergenic | 40.0% | |
| ATATGATCATGCACTCCACT+AGG | - | chr1.4:87743071-87743090 | MS.gene90834:intron | 40.0% | |
| CACAACTGAACACCCTAAAT+TGG | - | chr1.4:87742697-87742716 | MS.gene90834:intron | 40.0% | |
| CACATATGCTGCTAAAATGG+CGG | + | chr1.4:87740880-87740899 | None:intergenic | 40.0% | |
| CAGTGTCTTATCTTTGCTTG+AGG | + | chr1.4:87745622-87745641 | None:intergenic | 40.0% | |
| CATCCTGAGAAGAAAATGTG+AGG | - | chr1.4:87743048-87743067 | MS.gene90834:intron | 40.0% | |
| CCAACACAAATACGACATCA+AGG | + | chr1.4:87744164-87744183 | None:intergenic | 40.0% | |
| CCGGAAAAAGCCAGAATATT+GGG | - | chr1.4:87741201-87741220 | MS.gene90834:intron | 40.0% | |
| CCTTGATGTCGTATTTGTGT+TGG | - | chr1.4:87744161-87744180 | MS.gene90834:intron | 40.0% | |
| CGTCAATGATATCTTGGGTT+GGG | + | chr1.4:87745251-87745270 | None:intergenic | 40.0% | |
| GAACAGGTTATGAACTTAGC+AGG | - | chr1.4:87745481-87745500 | MS.gene90834:CDS | 40.0% | |
| GATGGAACAACAAACATGTG+TGG | + | chr1.4:87741413-87741432 | None:intergenic | 40.0% | |
| GGCATAGATTATGAAGGACA+TGG | - | chr1.4:87740794-87740813 | MS.gene90834:CDS | 40.0% | |
| GTATAATACATGGGTGGCTA+TGG | + | chr1.4:87742944-87742963 | None:intergenic | 40.0% | |
| TATACCTGTTGTCTGACTTC+GGG | + | chr1.4:87745288-87745307 | None:intergenic | 40.0% | |
| TATGATCATGCACTCCACTA+GGG | - | chr1.4:87743072-87743091 | MS.gene90834:intron | 40.0% | |
| TCATAACCTGTTCTCAAACG+AGG | + | chr1.4:87745474-87745493 | None:intergenic | 40.0% | |
| TGTCTGAGAATTGAGATGAG+AGG | - | chr1.4:87743436-87743455 | MS.gene90834:intron | 40.0% | |
| TGTGGAGTATAATACATGGG+TGG | + | chr1.4:87742950-87742969 | None:intergenic | 40.0% | |
| TTCACGAGGAATGAAGCTAT+TGG | - | chr1.4:87740557-87740576 | MS.gene90834:CDS | 40.0% | |
| TTGTTAGGAGAATCAATGGG+AGG | - | chr1.4:87741157-87741176 | MS.gene90834:intron | 40.0% | |
| ! | ATGTGCTACTGTGTGAGAAA+AGG | + | chr1.4:87743557-87743576 | None:intergenic | 40.0% |
| ! | CAATTTAGGGTGTTCAGTTG+TGG | + | chr1.4:87742699-87742718 | None:intergenic | 40.0% |
| ! | GATTTGGAGTCTCATGTGAT+AGG | + | chr1.4:87742602-87742621 | None:intergenic | 40.0% |
| ! | GCTTTTGGATTTTCGTTTGC+AGG | + | chr1.4:87740597-87740616 | None:intergenic | 40.0% |
| ! | GGAAAATCATATGGGTTACC+TGG | - | chr1.4:87740815-87740834 | MS.gene90834:CDS | 40.0% |
| ! | TAAGTCACTTTCTGAAGGCA+AGG | + | chr1.4:87744691-87744710 | None:intergenic | 40.0% |
| !!! | ATATTGGGACGGTGCTATTT+TGG | - | chr1.4:87741216-87741235 | MS.gene90834:intron | 40.0% |
| !!! | CCCAATATTCTGGCTTTTTC+CGG | + | chr1.4:87741204-87741223 | None:intergenic | 40.0% |
| ACCTATTGCGTTTCAAGAGG+CGG | - | chr1.4:87743787-87743806 | MS.gene90834:intron | 45.0% | |
| ACTCTATGCCCAAAAGTCAG+AGG | + | chr1.4:87744629-87744648 | None:intergenic | 45.0% | |
| AGTGTGATACATACTCCCTC+CGG | - | chr1.4:87743177-87743196 | MS.gene90834:intron | 45.0% | |
| ATACCTGTTGTCTGACTTCG+GGG | + | chr1.4:87745287-87745306 | None:intergenic | 45.0% | |
| ATAGCACCGTCCCAATATTC+TGG | + | chr1.4:87741214-87741233 | None:intergenic | 45.0% | |
| CAACTCTCTCTTTCTCTCAC+CGG | - | chr1.4:87743640-87743659 | MS.gene90834:intron | 45.0% | |
| CACCATTGTGGATGGTGTAA+GGG | - | chr1.4:87743014-87743033 | MS.gene90834:intron | 45.0% | |
| CAGGGTTGCTACACAAATTG+AGG | - | chr1.4:87745500-87745519 | MS.gene90834:intron | 45.0% | |
| CATGTGTCATGGATATGCCA+TGG | - | chr1.4:87740626-87740645 | MS.gene90834:intron | 45.0% | |
| CGGTGAGAGCTAATGTTCAA+AGG | + | chr1.4:87743738-87743757 | None:intergenic | 45.0% | |
| CTGACCTATTGCGTTTCAAG+AGG | - | chr1.4:87743784-87743803 | MS.gene90834:intron | 45.0% | |
| CTTACACCATCCACAATGGT+GGG | + | chr1.4:87743015-87743034 | None:intergenic | 45.0% | |
| CTTCTCACCACTGTCATCAT+CGG | + | chr1.4:87743928-87743947 | None:intergenic | 45.0% | |
| GATGATGACAGTGGTGAGAA+GGG | - | chr1.4:87743927-87743946 | MS.gene90834:intron | 45.0% | |
| GCAAAGCTAACCTTGCACAT+TGG | + | chr1.4:87741247-87741266 | None:intergenic | 45.0% | |
| GCAAGAAGACTTGCAAATGG+TGG | - | chr1.4:87740758-87740777 | MS.gene90834:CDS | 45.0% | |
| GGGTGTGAGAGATATACATG+AGG | - | chr1.4:87743092-87743111 | MS.gene90834:intron | 45.0% | |
| GGTAAACCTCGTTTGAGAAC+AGG | - | chr1.4:87745465-87745484 | MS.gene90834:CDS | 45.0% | |
| GTATATCTCTCACACCCTAG+TGG | + | chr1.4:87743089-87743108 | None:intergenic | 45.0% | |
| GTTGGGACTATTTGCCATGT+GGG | + | chr1.4:87745234-87745253 | None:intergenic | 45.0% | |
| TAAGCAAAGTTGCTCCCACA+TGG | - | chr1.4:87745217-87745236 | MS.gene90834:CDS | 45.0% | |
| TACCCTTACACCATCCACAA+TGG | + | chr1.4:87743019-87743038 | None:intergenic | 45.0% | |
| TGAAGCTATTGGCAACCAGT+TGG | - | chr1.4:87740568-87740587 | MS.gene90834:CDS | 45.0% | |
| TGAGAGAAAGAGAGAGTTGC+AGG | + | chr1.4:87743639-87743658 | None:intergenic | 45.0% | |
| TGGTGAGCCACCTGAAAATT+TGG | - | chr1.4:87745677-87745696 | MS.gene90834:CDS | 45.0% | |
| TTATACCCTGGAATGTGGCA+TGG | - | chr1.4:87745645-87745664 | MS.gene90834:intron | 45.0% | |
| TTCGTTTGCAGGAATCCAAC+TGG | + | chr1.4:87740586-87740605 | None:intergenic | 45.0% | |
| TTGTACACCGATGATGACAG+TGG | - | chr1.4:87743918-87743937 | MS.gene90834:intron | 45.0% | |
| ! | TTAGGGTGTTCAGTTGTGGA+TGG | + | chr1.4:87742695-87742714 | None:intergenic | 45.0% |
| !! | AGGTGTTGGGTTGCAGAAAA+TGG | + | chr1.4:87742782-87742801 | None:intergenic | 45.0% |
| !! | CGCCATTTTAGCAGCATATG+TGG | - | chr1.4:87740878-87740897 | MS.gene90834:intron | 45.0% |
| !! | CGTTGCACATGCTTTGAGAT+TGG | - | chr1.4:87742424-87742443 | MS.gene90834:intron | 45.0% |
| !! | TTTATTAAGATTTATTAAAT+GGG | - | chr1.4:87742870-87742889 | MS.gene90834:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr1.4:87741743-87741762 | None:intergenic | 5.0% |
| !!! | ATATTTAATAATTTCTTTTA+AGG | + | chr1.4:87742802-87742821 | None:intergenic | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr1.4:87741742-87741761 | None:intergenic | 5.0% |
| !!! | TTTTATTAAGATTTATTAAA+TGG | - | chr1.4:87742869-87742888 | MS.gene90834:intron | 5.0% |
| AAGGCACAGTGAGAGAGAGT+AGG | + | chr1.4:87743719-87743738 | None:intergenic | 50.0% | |
| ACATGGGTGGCTATGGAGAA+GGG | + | chr1.4:87742937-87742956 | None:intergenic | 50.0% | |
| ACCGCCTCTTGAAACGCAAT+AGG | + | chr1.4:87743791-87743810 | None:intergenic | 50.0% | |
| AGAATCAATGGGAGGAGCTG+TGG | - | chr1.4:87741165-87741184 | MS.gene90834:intron | 50.0% | |
| AGGAGAACGATGGTTGTTGG+AGG | - | chr1.4:87743819-87743838 | MS.gene90834:intron | 50.0% | |
| ATCTGAATAGCAGCGGTCGA+CGG | - | chr1.4:87743851-87743870 | MS.gene90834:intron | 50.0% | |
| CAGAGGAGAACGATGGTTGT+TGG | - | chr1.4:87743816-87743835 | MS.gene90834:intron | 50.0% | |
| CATGGAATGCAGCATCACCA+TGG | - | chr1.4:87740644-87740663 | MS.gene90834:intron | 50.0% | |
| CCACCATTGTGGATGGTGTA+AGG | - | chr1.4:87743013-87743032 | MS.gene90834:intron | 50.0% | |
| CCTTACACCATCCACAATGG+TGG | + | chr1.4:87743016-87743035 | None:intergenic | 50.0% | |
| CGATGATGACAGTGGTGAGA+AGG | - | chr1.4:87743926-87743945 | MS.gene90834:intron | 50.0% | |
| GCTATGGAGAAGGGTGACTA+TGG | + | chr1.4:87742928-87742947 | None:intergenic | 50.0% | |
| GGTTGGGACTATTTGCCATG+TGG | + | chr1.4:87745235-87745254 | None:intergenic | 50.0% | |
| GTCGACGACATAACAGTTGC+CGG | + | chr1.4:87743662-87743681 | None:intergenic | 50.0% | |
| GTGGTGACTGATGAGGATGA+CGG | - | chr1.4:87743952-87743971 | MS.gene90834:intron | 50.0% | |
| TACATGGGTGGCTATGGAGA+AGG | + | chr1.4:87742938-87742957 | None:intergenic | 50.0% | |
| TATTGCGTTTCAAGAGGCGG+TGG | - | chr1.4:87743790-87743809 | MS.gene90834:intron | 50.0% | |
| TGAGAGAGAGTAGGAGAGAG+TGG | + | chr1.4:87743710-87743729 | None:intergenic | 50.0% | |
| TTTGGCTGCACCAATGTGCA+AGG | - | chr1.4:87741234-87741253 | MS.gene90834:intron | 50.0% | |
| ! | ACGAGAAGGCCTCTGACTTT+TGG | - | chr1.4:87744617-87744636 | MS.gene90834:intron | 50.0% |
| ! | CATGGTGATGCTGCATTCCA+TGG | + | chr1.4:87740646-87740665 | None:intergenic | 50.0% |
| ! | CGAGAAGGCCTCTGACTTTT+GGG | - | chr1.4:87744618-87744637 | MS.gene90834:intron | 50.0% |
| ! | GATGACGGTGGTTATGTGGA+CGG | - | chr1.4:87743967-87743986 | MS.gene90834:intron | 50.0% |
| ! | TGAGGATGACGGTGGTTATG+TGG | - | chr1.4:87743963-87743982 | MS.gene90834:intron | 50.0% |
| !! | GGAGGGGTGTATTTTCTACG+TGG | - | chr1.4:87742325-87742344 | MS.gene90834:intron | 50.0% |
| ACGGTGGTTATGTGGACGGA+GGG | - | chr1.4:87743971-87743990 | MS.gene90834:intron | 55.0% | |
| AGTCCCCGAAGTCAGACAAC+AGG | - | chr1.4:87745281-87745300 | MS.gene90834:CDS | 55.0% | |
| ATGGGAGGGTGGTAGAAGGA+CGG | - | chr1.4:87744014-87744033 | MS.gene90834:intron | 55.0% | |
| GATGACAGTGGTGAGAAGGG+TGG | - | chr1.4:87743930-87743949 | MS.gene90834:intron | 55.0% | |
| GTGGTTGCAGAGGAGAACGA+TGG | - | chr1.4:87743809-87743828 | MS.gene90834:intron | 55.0% | |
| ! | AAGGGTGGTGGTGACTGATG+AGG | - | chr1.4:87743945-87743964 | MS.gene90834:intron | 55.0% |
| ! | AGGTGAAGCACCCACCATTG+TGG | - | chr1.4:87743002-87743021 | MS.gene90834:intron | 55.0% |
| ! | GAAGCACCCACCATTGTGGA+TGG | - | chr1.4:87743006-87743025 | MS.gene90834:intron | 55.0% |
| ! | GTGACTGATGAGGATGACGG+TGG | - | chr1.4:87743955-87743974 | MS.gene90834:intron | 55.0% |
| !! | CTGTGGCTCTGCTTTTGCAC+CGG | - | chr1.4:87741182-87741201 | MS.gene90834:intron | 55.0% |
| !! | TAGAAGGACGGTGGTGCTGT+TGG | - | chr1.4:87744026-87744045 | MS.gene90834:intron | 55.0% |
| CGTCGCTCTCTTGCTCTCAC+CGG | - | chr1.4:87743681-87743700 | MS.gene90834:intron | 60.0% | |
| GACAGTGGTGAGAAGGGTGG+TGG | - | chr1.4:87743933-87743952 | MS.gene90834:intron | 60.0% | |
| GACGGTGGTTATGTGGACGG+AGG | - | chr1.4:87743970-87743989 | MS.gene90834:intron | 60.0% | |
| GAGTAGGAGAGAGTGGTCGC+CGG | + | chr1.4:87743703-87743722 | None:intergenic | 60.0% | |
| GGTCATGGGAGGGTGGTAGA+AGG | - | chr1.4:87744010-87744029 | MS.gene90834:intron | 60.0% | |
| GGTTATGTGGACGGAGGGTC+CGG | - | chr1.4:87743976-87743995 | MS.gene90834:intron | 60.0% | |
| TCAAGAGGCGGTGGTTGCAG+AGG | - | chr1.4:87743799-87743818 | MS.gene90834:intron | 60.0% | |
| CCATGACCGCCTCTCACCAC+CGG | + | chr1.4:87743998-87744017 | None:intergenic | 65.0% | |
| CGGTGGTGAGAGGCGGTCAT+GGG | - | chr1.4:87743996-87744015 | MS.gene90834:intron | 65.0% | |
| GGAGGGTGGTAGAAGGACGG+TGG | - | chr1.4:87744017-87744036 | MS.gene90834:intron | 65.0% | |
| GGTGAGAGGCGGTCATGGGA+GGG | - | chr1.4:87744000-87744019 | MS.gene90834:intron | 65.0% | |
| TATGTGGACGGAGGGTCCGG+TGG | - | chr1.4:87743979-87743998 | MS.gene90834:intron | 65.0% | |
| TGGTGAGAGGCGGTCATGGG+AGG | - | chr1.4:87743999-87744018 | MS.gene90834:intron | 65.0% | |
| ACGGAGGGTCCGGTGGTGAG+AGG | - | chr1.4:87743986-87744005 | MS.gene90834:intron | 70.0% | |
| CCGGTGGTGAGAGGCGGTCA+TGG | - | chr1.4:87743995-87744014 | MS.gene90834:intron | 70.0% | |
| GAGAGGCGGTCATGGGAGGG+TGG | - | chr1.4:87744003-87744022 | MS.gene90834:intron | 70.0% | |
| GAGGGTCCGGTGGTGAGAGG+CGG | - | chr1.4:87743989-87744008 | MS.gene90834:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87740248 | 87745806 | 87740248 | ID=MS.gene90834 |
| chr1.4 | mRNA | 87740248 | 87745806 | 87740248 | ID=MS.gene90834.t1;Parent=MS.gene90834 |
| chr1.4 | exon | 87745804 | 87745806 | 87745804 | ID=MS.gene90834.t1.exon1;Parent=MS.gene90834.t1 |
| chr1.4 | CDS | 87745804 | 87745806 | 87745804 | ID=cds.MS.gene90834.t1;Parent=MS.gene90834.t1 |
| chr1.4 | exon | 87745676 | 87745705 | 87745676 | ID=MS.gene90834.t1.exon2;Parent=MS.gene90834.t1 |
| chr1.4 | CDS | 87745676 | 87745705 | 87745676 | ID=cds.MS.gene90834.t1;Parent=MS.gene90834.t1 |
| chr1.4 | exon | 87745385 | 87745511 | 87745385 | ID=MS.gene90834.t1.exon3;Parent=MS.gene90834.t1 |
| chr1.4 | CDS | 87745385 | 87745511 | 87745385 | ID=cds.MS.gene90834.t1;Parent=MS.gene90834.t1 |
| chr1.4 | exon | 87745155 | 87745301 | 87745155 | ID=MS.gene90834.t1.exon4;Parent=MS.gene90834.t1 |
| chr1.4 | CDS | 87745155 | 87745301 | 87745155 | ID=cds.MS.gene90834.t1;Parent=MS.gene90834.t1 |
| chr1.4 | exon | 87744799 | 87744929 | 87744799 | ID=MS.gene90834.t1.exon5;Parent=MS.gene90834.t1 |
| chr1.4 | CDS | 87744799 | 87744929 | 87744799 | ID=cds.MS.gene90834.t1;Parent=MS.gene90834.t1 |
| chr1.4 | exon | 87740752 | 87740889 | 87740752 | ID=MS.gene90834.t1.exon6;Parent=MS.gene90834.t1 |
| chr1.4 | CDS | 87740752 | 87740889 | 87740752 | ID=cds.MS.gene90834.t1;Parent=MS.gene90834.t1 |
| chr1.4 | exon | 87740248 | 87740616 | 87740248 | ID=MS.gene90834.t1.exon7;Parent=MS.gene90834.t1 |
| chr1.4 | CDS | 87740248 | 87740616 | 87740248 | ID=cds.MS.gene90834.t1;Parent=MS.gene90834.t1 |
| Gene Sequence |
| Protein sequence |
