Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052543.t1 | XP_003608219.1 | 85.7 | 196 | 27 | 1 | 1 | 196 | 1 | 195 | 8.30E-56 | 226.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052543.t1 | G7JRS5 | 85.7 | 196 | 27 | 1 | 1 | 196 | 1 | 195 | 6.0e-56 | 226.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052543 | MS.gene32193 | 0.845137 | 4.90E-59 | -1.69E-46 |
| MS.gene052543 | MS.gene55544 | 0.800086 | 1.70E-48 | -1.69E-46 |
| MS.gene052543 | MS.gene74407 | 0.803678 | 3.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052543 | MS.gene007196 | PPI |
| MS.gene24697 | MS.gene052543 | PPI |
| MS.gene052543 | MS.gene55120 | PPI |
| MS.gene037044 | MS.gene052543 | PPI |
| MS.gene050299 | MS.gene052543 | PPI |
| MS.gene07741 | MS.gene052543 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052543.t1 | MTR_4g090910 | 94.898 | 196 | 9 | 1 | 1 | 196 | 1 | 195 | 1.43e-126 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052543.t1 | AT1G11240 | 49.057 | 159 | 76 | 3 | 14 | 171 | 21 | 175 | 1.24e-27 | 103 |
Find 33 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGCTTCTTGTTATTTA+TGG | 0.077242 | 4.3:+23157425 | None:intergenic |
| TGTCAGCTGCTTCTTCTTCT+TGG | 0.186002 | 4.3:+23158843 | None:intergenic |
| GATCTCAAAGATTATGTTAC+TGG | 0.251622 | 4.3:-23159108 | MS.gene052543:CDS |
| AATGGCTTCTTGTTATTTAT+GGG | 0.255756 | 4.3:+23157426 | None:intergenic |
| AGCTTCTTCTTGTTGTTTGT+TGG | 0.267711 | 4.3:+23159050 | None:intergenic |
| TAACAAGAAGCCATTTAAAA+AGG | 0.309156 | 4.3:-23157418 | MS.gene052543:CDS |
| TTGGAAAGAGAACTTGCTTA+TGG | 0.326372 | 4.3:-23158914 | MS.gene052543:CDS |
| TCTCTCTTACTTCTTTGCTT+TGG | 0.342431 | 4.3:+23157372 | None:intergenic |
| AGGTACCGTCACTTGTTTCC+CGG | 0.345185 | 4.3:+23157330 | None:intergenic |
| CTAGGGAAACTCTCTTCGTC+AGG | 0.359375 | 4.3:+23157516 | None:intergenic |
| ACGCAACGAGGAACGCATAA+AGG | 0.384606 | 4.3:-23159016 | MS.gene052543:intron |
| TGGAAAGAGAACTTGCTTAT+GGG | 0.391137 | 4.3:-23158913 | MS.gene052543:CDS |
| GCAATATCAGAGCGCAAAAC+TGG | 0.417440 | 4.3:-23159189 | MS.gene052543:CDS |
| AAACAAGTTCAATCTATTGC+TGG | 0.433583 | 4.3:-23158821 | MS.gene052543:intron |
| GGGGCTTCTTTCCTTTCGCT+AGG | 0.442475 | 4.3:+23157498 | None:intergenic |
| TATTGCTGCTTCTTCATCCA+TGG | 0.449284 | 4.3:+23159206 | None:intergenic |
| ATGGGAGGACACTGCTGGTG+GGG | 0.467882 | 4.3:+23157479 | None:intergenic |
| GCAGTTTCAGTGTCATCAGT+TGG | 0.485085 | 4.3:+23158881 | None:intergenic |
| AAAAGGAAAGGAAAGAAGCC+GGG | 0.511053 | 4.3:-23157348 | MS.gene052543:CDS |
| GATGGGAGGACACTGCTGGT+GGG | 0.523396 | 4.3:+23157478 | None:intergenic |
| GGAAAGAGAACTTGCTTATG+GGG | 0.538034 | 4.3:-23158912 | MS.gene052543:CDS |
| TTTATCAGCTACAACAGGAT+GGG | 0.538526 | 4.3:+23157461 | None:intergenic |
| GGATGGGAGGACACTGCTGG+TGG | 0.539822 | 4.3:+23157477 | None:intergenic |
| GGGCTTCTTTCCTTTCGCTA+GGG | 0.544145 | 4.3:+23157499 | None:intergenic |
| ACAGGATGGGAGGACACTGC+TGG | 0.582988 | 4.3:+23157474 | None:intergenic |
| ATCTTTCTCATCGAAAGAGA+TGG | 0.597691 | 4.3:+23159128 | None:intergenic |
| ATCAGCTACAACAGGATGGG+AGG | 0.599440 | 4.3:+23157464 | None:intergenic |
| AAGAGAGTTTCCCTAGCGAA+AGG | 0.607065 | 4.3:-23157509 | MS.gene052543:CDS |
| GTTTCAGTGTCATCAGTTGG+TGG | 0.620306 | 4.3:+23158884 | None:intergenic |
| TAGGGAAACTCTCTTCGTCA+GGG | 0.626002 | 4.3:+23157517 | None:intergenic |
| GAAAGAGAACTTGCTTATGG+GGG | 0.681530 | 4.3:-23158911 | MS.gene052543:CDS |
| TATTAGACGCAAACGCAACG+AGG | 0.682542 | 4.3:-23159028 | MS.gene052543:CDS |
| AGAAGCCGGGAAACAAGTGA+CGG | 0.722721 | 4.3:-23157335 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATGATTATATCAATAAA+AGG | + | chr4.3:23157769-23157788 | None:intergenic | 15.0% |
| !! | ACATGATTATATCAATAAAA+GGG | + | chr4.3:23157768-23157787 | None:intergenic | 15.0% |
| !! | AGAAATAAATTGACAAATTA+AGG | + | chr4.3:23158065-23158084 | None:intergenic | 15.0% |
| !! | GAAATAAATTGACAAATTAA+GGG | + | chr4.3:23158064-23158083 | None:intergenic | 15.0% |
| !! | TTTATTGATATAATCATGTT+TGG | - | chr4.3:23157769-23157788 | MS.gene052543:intron | 15.0% |
| !!! | AAAATTGAATCTTTAAGAAA+AGG | + | chr4.3:23157560-23157579 | None:intergenic | 15.0% |
| !!! | AAATTGAATCTTTAAGAAAA+GGG | + | chr4.3:23157559-23157578 | None:intergenic | 15.0% |
| !!! | AATTGAATCTTTAAGAAAAG+GGG | + | chr4.3:23157558-23157577 | None:intergenic | 20.0% |
| !!! | TAAGCTATTTCTATAACATA+AGG | - | chr4.3:23157858-23157877 | MS.gene052543:intron | 20.0% |
| ! | AAAGAAGTAAGAGAGAAAAA+AGG | - | chr4.3:23159177-23159196 | MS.gene052543:CDS | 25.0% |
| ! | ATTGCTTAATTAAGTGCTTA+TGG | - | chr4.3:23157796-23157815 | MS.gene052543:intron | 25.0% |
| ! | TAACAAGAAGCCATTTAAAA+AGG | - | chr4.3:23159124-23159143 | MS.gene052543:CDS | 25.0% |
| ! | TATAATCTGTTTATGCCAAT+AGG | - | chr4.3:23157981-23158000 | MS.gene052543:intron | 25.0% |
| ! | TGAAAGAAATAGAGTACATT+GGG | - | chr4.3:23158337-23158356 | MS.gene052543:intron | 25.0% |
| !! | CTTATACTTGATGTTTTACT+AGG | - | chr4.3:23158215-23158234 | MS.gene052543:intron | 25.0% |
| !! | TGAAATGTATTTTATTGCAG+AGG | - | chr4.3:23157602-23157621 | MS.gene052543:intron | 25.0% |
| !!! | AAATGGCTTCTTGTTATTTA+TGG | + | chr4.3:23159120-23159139 | None:intergenic | 25.0% |
| !!! | AATGGCTTCTTGTTATTTAT+GGG | + | chr4.3:23159119-23159138 | None:intergenic | 25.0% |
| AAACAAGTTCAATCTATTGC+TGG | - | chr4.3:23157721-23157740 | MS.gene052543:intron | 30.0% | |
| AGTAAGAGAGAAAAAAGGAA+AGG | - | chr4.3:23159182-23159201 | MS.gene052543:CDS | 30.0% | |
| ATTAAATTCCTTCTTCAGAC+TGG | - | chr4.3:23158149-23158168 | MS.gene052543:intron | 30.0% | |
| CTTATTGTATAAACTCTCTG+AGG | + | chr4.3:23157938-23157957 | None:intergenic | 30.0% | |
| GATCTCAAAGATTATGTTAC+TGG | - | chr4.3:23157434-23157453 | MS.gene052543:CDS | 30.0% | |
| GTGAAAGAAATAGAGTACAT+TGG | - | chr4.3:23158336-23158355 | MS.gene052543:intron | 30.0% | |
| TCAAAACTGTTTGACCTATT+AGG | - | chr4.3:23158254-23158273 | MS.gene052543:intron | 30.0% | |
| TGCTTAGTGTTAGTTGTAAA+AGG | - | chr4.3:23158109-23158128 | MS.gene052543:intron | 30.0% | |
| TTTACAACTAACACTAAGCA+TGG | + | chr4.3:23158109-23158128 | None:intergenic | 30.0% | |
| ! | ATCGTTTTCATATGTCTTTG+TGG | + | chr4.3:23158970-23158989 | None:intergenic | 30.0% |
| ! | GTGATTTTTCTTACTGCATT+TGG | - | chr4.3:23158899-23158918 | MS.gene052543:CDS | 30.0% |
| ! | TATTTTATTGCAGAGGAAGT+TGG | - | chr4.3:23157609-23157628 | MS.gene052543:intron | 30.0% |
| ! | TTCTTTTTATCAGCTACAAC+AGG | + | chr4.3:23159089-23159108 | None:intergenic | 30.0% |
| ! | TTGATGTTTTACTAGGACTT+GGG | - | chr4.3:23158222-23158241 | MS.gene052543:intron | 30.0% |
| ! | TTTGTTGCAGCCTTTTTAAA+TGG | + | chr4.3:23159137-23159156 | None:intergenic | 30.0% |
| AAAAAGGAAAGGAAAGAAGC+CGG | - | chr4.3:23159193-23159212 | MS.gene052543:CDS | 35.0% | |
| AAGAAATAGAGTACATTGGG+AGG | - | chr4.3:23158340-23158359 | MS.gene052543:intron | 35.0% | |
| AAGTATAAGCACAAGACATG+CGG | + | chr4.3:23158204-23158223 | None:intergenic | 35.0% | |
| AATACAAAACCCTCCTCATT+TGG | - | chr4.3:23158394-23158413 | MS.gene052543:intron | 35.0% | |
| ACCTATATGAGCTTACCTAT+TGG | + | chr4.3:23157999-23158018 | None:intergenic | 35.0% | |
| AGAAATAGAGTACATTGGGA+GGG | - | chr4.3:23158341-23158360 | MS.gene052543:intron | 35.0% | |
| ATACAAAACCCTCCTCATTT+GGG | - | chr4.3:23158395-23158414 | MS.gene052543:intron | 35.0% | |
| ATCTTTCTCATCGAAAGAGA+TGG | + | chr4.3:23157417-23157436 | None:intergenic | 35.0% | |
| GAACTAAAAAGTTGTACTGG+AGG | - | chr4.3:23158419-23158438 | MS.gene052543:intron | 35.0% | |
| GTGGAAAATATAGAGGGAAA+TGG | + | chr4.3:23158595-23158614 | None:intergenic | 35.0% | |
| TAAAAAGTTGTACTGGAGGA+GGG | - | chr4.3:23158423-23158442 | MS.gene052543:intron | 35.0% | |
| TCTCTCTTACTTCTTTGCTT+TGG | + | chr4.3:23159173-23159192 | None:intergenic | 35.0% | |
| TTCATCATCAGACACATCTA+AGG | + | chr4.3:23158036-23158055 | None:intergenic | 35.0% | |
| TTTATCAGCTACAACAGGAT+GGG | + | chr4.3:23159084-23159103 | None:intergenic | 35.0% | |
| ! | CTTGATGTTTTACTAGGACT+TGG | - | chr4.3:23158221-23158240 | MS.gene052543:intron | 35.0% |
| ! | GAATCTTTAAGAAAAGGGGT+AGG | + | chr4.3:23157554-23157573 | None:intergenic | 35.0% |
| ! | TGGAAAGAGAACTTGCTTAT+GGG | - | chr4.3:23157629-23157648 | MS.gene052543:intron | 35.0% |
| ! | TTGGAAAGAGAACTTGCTTA+TGG | - | chr4.3:23157628-23157647 | MS.gene052543:intron | 35.0% |
| ! | TTTTATCAGCTACAACAGGA+TGG | + | chr4.3:23159085-23159104 | None:intergenic | 35.0% |
| !! | AGCTTCTTCTTGTTGTTTGT+TGG | + | chr4.3:23157495-23157514 | None:intergenic | 35.0% |
| !! | TAAGGCTTTGTTTGGAAGTT+TGG | + | chr4.3:23158651-23158670 | None:intergenic | 35.0% |
| AAAAGGAAAGGAAAGAAGCC+GGG | - | chr4.3:23159194-23159213 | MS.gene052543:CDS | 40.0% | |
| AACTCGCAACAAAGCCTAAT+AGG | + | chr4.3:23158271-23158290 | None:intergenic | 40.0% | |
| ATGTAGTGTAGAGGGCTATT+TGG | - | chr4.3:23158855-23158874 | MS.gene052543:CDS | 40.0% | |
| CATCAGACACATCTAAGGAT+TGG | + | chr4.3:23158031-23158050 | None:intergenic | 40.0% | |
| CCAAACAAAGCCTTAGTTGT+CGG | - | chr4.3:23158656-23158675 | MS.gene052543:intron | 40.0% | |
| CTAAAAAGTTGTACTGGAGG+AGG | - | chr4.3:23158422-23158441 | MS.gene052543:intron | 40.0% | |
| GAAATAGAGTACATTGGGAG+GGG | - | chr4.3:23158342-23158361 | MS.gene052543:intron | 40.0% | |
| GCCAATAGGTAAGCTCATAT+AGG | - | chr4.3:23157995-23158014 | MS.gene052543:intron | 40.0% | |
| GGGGAACTAAAAAGTTGTAC+TGG | - | chr4.3:23158416-23158435 | MS.gene052543:intron | 40.0% | |
| TACAAAACCCTCCTCATTTG+GGG | - | chr4.3:23158396-23158415 | MS.gene052543:intron | 40.0% | |
| TAGGGGGTGGAAAATATAGA+GGG | + | chr4.3:23158601-23158620 | None:intergenic | 40.0% | |
| TTAGGGGGTGGAAAATATAG+AGG | + | chr4.3:23158602-23158621 | None:intergenic | 40.0% | |
| TTTGTTTGGAAGTTTGGAGG+GGG | + | chr4.3:23158645-23158664 | None:intergenic | 40.0% | |
| ! | CTTTGTTTGGAAGTTTGGAG+GGG | + | chr4.3:23158646-23158665 | None:intergenic | 40.0% |
| ! | GAAAGAGAACTTGCTTATGG+GGG | - | chr4.3:23157631-23157650 | MS.gene052543:intron | 40.0% |
| ! | GGAAAGAGAACTTGCTTATG+GGG | - | chr4.3:23157630-23157649 | MS.gene052543:intron | 40.0% |
| !! | ATTAGGCTTTGTTGCGAGTT+TGG | - | chr4.3:23158271-23158290 | MS.gene052543:intron | 40.0% |
| !! | GCTTTGTTTGGAAGTTTGGA+GGG | + | chr4.3:23158647-23158666 | None:intergenic | 40.0% |
| !!! | CTTTTTAGTTCCCCCAAATG+AGG | + | chr4.3:23158410-23158429 | None:intergenic | 40.0% |
| AAGAGAGTTTCCCTAGCGAA+AGG | - | chr4.3:23159033-23159052 | MS.gene052543:CDS | 45.0% | |
| AAGCCTTAGTTGTCGGTAGT+TGG | - | chr4.3:23158663-23158682 | MS.gene052543:intron | 45.0% | |
| AATGCATGCCAGTCTGAAGA+AGG | + | chr4.3:23158160-23158179 | None:intergenic | 45.0% | |
| ACAAAACCCTCCTCATTTGG+GGG | - | chr4.3:23158397-23158416 | MS.gene052543:intron | 45.0% | |
| ACACTACATGTACGGCATAG+TGG | + | chr4.3:23158844-23158863 | None:intergenic | 45.0% | |
| AGCCCTCTACACTACATGTA+CGG | + | chr4.3:23158852-23158871 | None:intergenic | 45.0% | |
| ATGCCGTACATGTAGTGTAG+AGG | - | chr4.3:23158846-23158865 | MS.gene052543:CDS | 45.0% | |
| GCAATATCAGAGCGCAAAAC+TGG | - | chr4.3:23157353-23157372 | MS.gene052543:CDS | 45.0% | |
| GCAGTTTCAGTGTCATCAGT+TGG | + | chr4.3:23157664-23157683 | None:intergenic | 45.0% | |
| GTTTCAGTGTCATCAGTTGG+TGG | + | chr4.3:23157661-23157680 | None:intergenic | 45.0% | |
| TAGGGAAACTCTCTTCGTCA+GGG | + | chr4.3:23159028-23159047 | None:intergenic | 45.0% | |
| TATTAGACGCAAACGCAACG+AGG | - | chr4.3:23157514-23157533 | MS.gene052543:CDS | 45.0% | |
| TGCCGTACATGTAGTGTAGA+GGG | - | chr4.3:23158847-23158866 | MS.gene052543:CDS | 45.0% | |
| TGTCAGCTGCTTCTTCTTCT+TGG | + | chr4.3:23157702-23157721 | None:intergenic | 45.0% | |
| TTAGTTCCCCCAAATGAGGA+GGG | + | chr4.3:23158406-23158425 | None:intergenic | 45.0% | |
| TTGTTTGGAAGTTTGGAGGG+GGG | + | chr4.3:23158644-23158663 | None:intergenic | 45.0% | |
| ! | TTGTACTGGAGGAGGGTTTT+GGG | - | chr4.3:23158430-23158449 | MS.gene052543:intron | 45.0% |
| ! | TTTAGTTCCCCCAAATGAGG+AGG | + | chr4.3:23158407-23158426 | None:intergenic | 45.0% |
| !! | CCGACAACTAAGGCTTTGTT+TGG | + | chr4.3:23158659-23158678 | None:intergenic | 45.0% |
| !! | GGCTTTGTTTGGAAGTTTGG+AGG | + | chr4.3:23158648-23158667 | None:intergenic | 45.0% |
| !!! | GACGGTTTTGGAAAAGAGGA+AGG | - | chr4.3:23158308-23158327 | MS.gene052543:intron | 45.0% |
| ACGCAACGAGGAACGCATAA+AGG | - | chr4.3:23157526-23157545 | MS.gene052543:CDS | 50.0% | |
| ATAGAGTACATTGGGAGGGG+AGG | - | chr4.3:23158345-23158364 | MS.gene052543:intron | 50.0% | |
| ATCAGCTACAACAGGATGGG+AGG | + | chr4.3:23159081-23159100 | None:intergenic | 50.0% | |
| CAGCCAACTACCGACAACTA+AGG | + | chr4.3:23158669-23158688 | None:intergenic | 50.0% | |
| CTAGGGAAACTCTCTTCGTC+AGG | + | chr4.3:23159029-23159048 | None:intergenic | 50.0% | |
| GACTCCCAAAGTGGGATAGT+GGG | + | chr4.3:23158792-23158811 | None:intergenic | 50.0% | |
| GAGGGGTAGGAAAGGCTTTA+GGG | + | chr4.3:23158619-23158638 | None:intergenic | 50.0% | |
| GCTACCCACTATCCCACTTT+GGG | - | chr4.3:23158785-23158804 | MS.gene052543:intron | 50.0% | |
| GGGCTTCTTTCCTTTCGCTA+GGG | + | chr4.3:23159046-23159065 | None:intergenic | 50.0% | |
| TACGGCATAGTGGTCAATCC+CGG | + | chr4.3:23158834-23158853 | None:intergenic | 50.0% | |
| TAGAGTACATTGGGAGGGGA+GGG | - | chr4.3:23158346-23158365 | MS.gene052543:intron | 50.0% | |
| TGAGGGGTAGGAAAGGCTTT+AGG | + | chr4.3:23158620-23158639 | None:intergenic | 50.0% | |
| TGCTACCCACTATCCCACTT+TGG | - | chr4.3:23158784-23158803 | MS.gene052543:intron | 50.0% | |
| TGTTTGGAAGTTTGGAGGGG+GGG | + | chr4.3:23158643-23158662 | None:intergenic | 50.0% | |
| ! | AGGGGTAGGAAAGGCTTTAG+GGG | + | chr4.3:23158618-23158637 | None:intergenic | 50.0% |
| ! | CAAGACATGCGGACTGATCA+AGG | + | chr4.3:23158193-23158212 | None:intergenic | 50.0% |
| ! | CACTATCCCACTTTGGGAGT+CGG | - | chr4.3:23158791-23158810 | MS.gene052543:intron | 50.0% |
| ! | GAAAAGCCGACTCCCAAAGT+GGG | + | chr4.3:23158800-23158819 | None:intergenic | 50.0% |
| ! | GCTTTGTTGCGAGTTTGGAG+GGG | - | chr4.3:23158276-23158295 | MS.gene052543:intron | 50.0% |
| ! | GTTGTACTGGAGGAGGGTTT+TGG | - | chr4.3:23158429-23158448 | MS.gene052543:intron | 50.0% |
| ! | TAGTGGGTAGCATGGAGTGA+TGG | + | chr4.3:23158776-23158795 | None:intergenic | 50.0% |
| ! | TGTACTGGAGGAGGGTTTTG+GGG | - | chr4.3:23158431-23158450 | MS.gene052543:intron | 50.0% |
| !! | AAGTGGGATAGTGGGTAGCA+TGG | + | chr4.3:23158784-23158803 | None:intergenic | 50.0% |
| !! | AGGCTTTGTTGCGAGTTTGG+AGG | - | chr4.3:23158274-23158293 | MS.gene052543:intron | 50.0% |
| !! | GGCTTTGTTGCGAGTTTGGA+GGG | - | chr4.3:23158275-23158294 | MS.gene052543:intron | 50.0% |
| !!! | AGGGGACGGTTTTGGAAAAG+AGG | - | chr4.3:23158304-23158323 | MS.gene052543:intron | 50.0% |
| CGACTCCCAAAGTGGGATAG+TGG | + | chr4.3:23158793-23158812 | None:intergenic | 55.0% | |
| CGAGTTTGGAGGGGAAGAGA+GGG | - | chr4.3:23158285-23158304 | MS.gene052543:intron | 55.0% | |
| GAGTTTGGAGGGGAAGAGAG+GGG | - | chr4.3:23158286-23158305 | MS.gene052543:intron | 55.0% | |
| GGGGCTTCTTTCCTTTCGCT+AGG | + | chr4.3:23159047-23159066 | None:intergenic | 55.0% | |
| GTCAATCCCGGATAGCAGAG+CGG | + | chr4.3:23158822-23158841 | None:intergenic | 55.0% | |
| GTTGGCTGTAGCACTAGCGT+TGG | - | chr4.3:23158681-23158700 | MS.gene052543:intron | 55.0% | |
| TCCCACGTTCCAACGCATCT+GGG | + | chr4.3:23158734-23158753 | None:intergenic | 55.0% | |
| TGGGTAGCATGGAGTGATGG+CGG | + | chr4.3:23158773-23158792 | None:intergenic | 55.0% | |
| ! | GCTTTTCCGCTCTGCTATCC+GGG | - | chr4.3:23158813-23158832 | MS.gene052543:intron | 55.0% |
| ! | GGAAAAGCCGACTCCCAAAG+TGG | + | chr4.3:23158801-23158820 | None:intergenic | 55.0% |
| ! | GGCTTTTCCGCTCTGCTATC+CGG | - | chr4.3:23158812-23158831 | MS.gene052543:intron | 55.0% |
| !! | GGGGTAGGAAAGGCTTTAGG+GGG | + | chr4.3:23158617-23158636 | None:intergenic | 55.0% |
| !! | GTACTGGAGGAGGGTTTTGG+GGG | - | chr4.3:23158432-23158451 | MS.gene052543:intron | 55.0% |
| !! | GTAGGAAAGGCTTTAGGGGG+TGG | + | chr4.3:23158614-23158633 | None:intergenic | 55.0% |
| !!! | AGGAGGGTTTTGGGGGGTTT+TGG | - | chr4.3:23158439-23158458 | MS.gene052543:intron | 55.0% |
| !!! | AGGGTTTTGGGGGGTTTTGG+AGG | - | chr4.3:23158442-23158461 | MS.gene052543:intron | 55.0% |
| !!! | GGGTTTTGGGGGGTTTTGGA+GGG | - | chr4.3:23158443-23158462 | MS.gene052543:intron | 55.0% |
| !!! | TACTGGAGGAGGGTTTTGGG+GGG | - | chr4.3:23158433-23158452 | MS.gene052543:intron | 55.0% |
| AAGTTTGGAGGGGGGGTGAG+GGG | + | chr4.3:23158636-23158655 | None:intergenic | 60.0% | |
| ACAGGATGGGAGGACACTGC+TGG | + | chr4.3:23159071-23159090 | None:intergenic | 60.0% | |
| ACATTGGGAGGGGAGGGCTT+TGG | - | chr4.3:23158352-23158371 | MS.gene052543:intron | 60.0% | |
| AGGTCACACTCGACTCCGCT+AGG | + | chr4.3:23158709-23158728 | None:intergenic | 60.0% | |
| ATGGGAGGACACTGCTGGTG+GGG | + | chr4.3:23159066-23159085 | None:intergenic | 60.0% | |
| ATTGGGAGGGGAGGGCTTTG+GGG | - | chr4.3:23158354-23158373 | MS.gene052543:intron | 60.0% | |
| CATTGGGAGGGGAGGGCTTT+GGG | - | chr4.3:23158353-23158372 | MS.gene052543:intron | 60.0% | |
| CCACGTTCCAACGCATCTGG+GGG | + | chr4.3:23158732-23158751 | None:intergenic | 60.0% | |
| CCCACGTTCCAACGCATCTG+GGG | + | chr4.3:23158733-23158752 | None:intergenic | 60.0% | |
| CCCCAGATGCGTTGGAACGT+GGG | - | chr4.3:23158730-23158749 | MS.gene052543:intron | 60.0% | |
| CTCCCACGTTCCAACGCATC+TGG | + | chr4.3:23158735-23158754 | None:intergenic | 60.0% | |
| GAAGTTTGGAGGGGGGGTGA+GGG | + | chr4.3:23158637-23158656 | None:intergenic | 60.0% | |
| GATGGGAGGACACTGCTGGT+GGG | + | chr4.3:23159067-23159086 | None:intergenic | 60.0% | |
| GCGAGTTTGGAGGGGAAGAG+AGG | - | chr4.3:23158284-23158303 | MS.gene052543:intron | 60.0% | |
| TTGGAGGGGAAGAGAGGGGA+CGG | - | chr4.3:23158290-23158309 | MS.gene052543:intron | 60.0% | |
| ! | GCACTAGCGTTGGAGCCTAG+CGG | - | chr4.3:23158691-23158710 | MS.gene052543:intron | 60.0% |
| ! | GGGAAGAGAGGGGACGGTTT+TGG | - | chr4.3:23158296-23158315 | MS.gene052543:intron | 60.0% |
| CCCCCAGATGCGTTGGAACG+TGG | - | chr4.3:23158729-23158748 | MS.gene052543:intron | 65.0% | |
| CGTTCCAACGCATCTGGGGG+AGG | + | chr4.3:23158729-23158748 | None:intergenic | 65.0% | |
| GGAAGTTTGGAGGGGGGGTG+AGG | + | chr4.3:23158638-23158657 | None:intergenic | 65.0% | |
| GGATGGGAGGACACTGCTGG+TGG | + | chr4.3:23159068-23159087 | None:intergenic | 65.0% | |
| GTGACCTCCCCCAGATGCGT+TGG | - | chr4.3:23158722-23158741 | MS.gene052543:intron | 65.0% | |
| ! | TTGGGAGGGGAGGGCTTTGG+GGG | - | chr4.3:23158355-23158374 | MS.gene052543:intron | 65.0% |
| CGTGGGAGTAGCGCCCTTCG+CGG | - | chr4.3:23158747-23158766 | MS.gene052543:intron | 70.0% | |
| GGGGGGGTGAGGGGTAGGAA+AGG | + | chr4.3:23158627-23158646 | None:intergenic | 70.0% | |
| TTGGAGGGGGGGTGAGGGGT+AGG | + | chr4.3:23158632-23158651 | None:intergenic | 70.0% | |
| !! | GGAGTGATGGCGGCCGCGAA+GGG | + | chr4.3:23158763-23158782 | None:intergenic | 70.0% |
| !! | TGGAGTGATGGCGGCCGCGA+AGG | + | chr4.3:23158764-23158783 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 23157338 | 23159226 | 23157338 | ID=MS.gene052543 |
| chr4.3 | mRNA | 23157338 | 23159226 | 23157338 | ID=MS.gene052543.t1;Parent=MS.gene052543 |
| chr4.3 | exon | 23159017 | 23159226 | 23159017 | ID=MS.gene052543.t1.exon1;Parent=MS.gene052543.t1 |
| chr4.3 | CDS | 23159017 | 23159226 | 23159017 | ID=cds.MS.gene052543.t1;Parent=MS.gene052543.t1 |
| chr4.3 | exon | 23158822 | 23158942 | 23158822 | ID=MS.gene052543.t1.exon2;Parent=MS.gene052543.t1 |
| chr4.3 | CDS | 23158822 | 23158942 | 23158822 | ID=cds.MS.gene052543.t1;Parent=MS.gene052543.t1 |
| chr4.3 | exon | 23157338 | 23157597 | 23157338 | ID=MS.gene052543.t1.exon3;Parent=MS.gene052543.t1 |
| chr4.3 | CDS | 23157338 | 23157597 | 23157338 | ID=cds.MS.gene052543.t1;Parent=MS.gene052543.t1 |
| Gene Sequence |
| Protein sequence |
