AlfalfaGEDB | MS.gene55544

M. sativa cultivar XinJiangDaYe / MS.gene55544

KEGG: K02183
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9 PF13833.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55544.t1	AAT73619.1	81.4	113	21	0	1	113	37	149	5.70E-41	176.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55544.t1	Q41420	76.1	113	27	0	1	113	12	124	9.2e-40	164.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55544.t1	C6JSN5	100.0	113	0	0	1	113	1	113	4.1e-41	176.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049140	MS.gene55544	0.80523	1.48E-49	-1.69E-46
MS.gene051756	MS.gene55544	0.823875	1.09E-53	-1.69E-46
MS.gene051987	MS.gene55544	0.805821	1.11E-49	-1.69E-46
MS.gene052242	MS.gene55544	-0.81112	8.21E-51	-1.69E-46
MS.gene052543	MS.gene55544	0.800086	1.70E-48	-1.69E-46
MS.gene052818	MS.gene55544	-0.812707	3.70E-51	-1.69E-46
MS.gene053058	MS.gene55544	0.82342	1.40E-53	-1.69E-46
MS.gene053298	MS.gene55544	0.819263	1.27E-52	-1.69E-46
MS.gene053677	MS.gene55544	0.80501	1.64E-49	-1.69E-46
MS.gene05469	MS.gene55544	0.811158	8.05E-51	-1.69E-46
MS.gene056057	MS.gene55544	0.80586	1.09E-49	-1.69E-46
MS.gene056787	MS.gene55544	0.837968	3.80E-57	-1.69E-46
MS.gene056849	MS.gene55544	0.801031	1.09E-48	-1.69E-46
MS.gene057452	MS.gene55544	-0.84655	2.02E-59	-1.69E-46
MS.gene05781	MS.gene55544	0.810619	1.05E-50	-1.69E-46
MS.gene057999	MS.gene55544	0.843192	1.63E-58	-1.69E-46
MS.gene058074	MS.gene55544	0.80061	1.33E-48	-1.69E-46
MS.gene058238	MS.gene55544	0.813877	2.05E-51	-1.69E-46
MS.gene059050	MS.gene55544	0.805626	1.22E-49	-1.69E-46
MS.gene059872	MS.gene55544	-0.80124	9.88E-49	-1.69E-46
MS.gene06011	MS.gene55544	0.800667	1.29E-48	-1.69E-46
MS.gene06018	MS.gene55544	0.802482	5.49E-49	-1.69E-46
MS.gene060869	MS.gene55544	0.815678	8.17E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55544.t1	MTR_0168s0120	100.000	113	0	0	1	113	1	113	5.22e-79	228
MS.gene55544.t1	MTR_6g025320	100.000	113	0	0	1	113	1	113	5.22e-79	228
MS.gene55544.t1	MTR_5g088320	100.000	113	0	0	1	113	37	149	7.05e-79	228
MS.gene55544.t1	MTR_5g088320	47.692	65	34	0	49	113	12	76	1.20e-13	63.2
MS.gene55544.t1	MTR_6g025320	100.000	113	0	0	1	113	37	149	8.59e-79	228
MS.gene55544.t1	MTR_6g025320	45.455	77	41	1	37	113	1	76	4.30e-14	64.3
MS.gene55544.t1	MTR_7g087610	99.115	113	1	0	1	113	37	149	2.66e-78	227
MS.gene55544.t1	MTR_7g087610	45.455	77	41	1	37	113	1	76	7.11e-14	63.9
MS.gene55544.t1	MTR_1g041285	80.357	112	22	0	1	112	37	148	1.24e-63	190
MS.gene55544.t1	MTR_1g041285	47.692	65	34	0	49	113	12	76	1.21e-12	60.5
MS.gene55544.t1	MTR_1g076650	79.464	112	23	0	1	112	37	148	5.81e-63	188
MS.gene55544.t1	MTR_1g076650	45.070	71	36	1	46	113	6	76	6.09e-12	58.9
MS.gene55544.t1	MTR_1g071150	57.658	111	46	1	1	111	37	146	2.67e-41	133
MS.gene55544.t1	MTR_1g071150	40.260	77	45	1	37	113	1	76	1.27e-12	60.5
MS.gene55544.t1	MTR_7g115040	61.607	112	43	0	1	112	37	148	1.30e-39	129
MS.gene55544.t1	MTR_5g011850	48.673	113	56	1	1	113	37	147	8.32e-34	114
MS.gene55544.t1	MTR_8g066630	46.087	115	59	1	1	112	42	156	5.08e-32	110
MS.gene55544.t1	MTR_3g055570	53.636	110	36	1	1	110	77	171	5.15e-32	111
MS.gene55544.t1	MTR_1g032070	50.442	113	56	0	1	113	71	183	2.48e-29	104
MS.gene55544.t1	MTR_1g032070	51.613	62	30	0	48	109	45	106	2.67e-15	68.6
MS.gene55544.t1	MTR_7g074020	43.636	110	62	0	1	110	55	164	1.41e-27	99.8
MS.gene55544.t1	MTR_7g074020	46.970	66	35	0	48	113	29	94	7.05e-13	61.6
MS.gene55544.t1	MTR_4g112460	43.750	112	61	1	1	110	36	147	2.68e-27	99.0
MS.gene55544.t1	MTR_6g007613	41.818	110	64	0	1	110	54	163	1.15e-25	94.7
MS.gene55544.t1	MTR_6g007613	43.421	76	43	0	38	113	18	93	5.32e-13	62.0
MS.gene55544.t1	MTR_8g105230	49.057	106	54	0	1	106	61	166	1.70e-25	94.7
MS.gene55544.t1	MTR_8g105230	45.902	61	33	0	49	109	36	96	1.06e-12	61.6
MS.gene55544.t1	MTR_8g107110	44.545	110	60	1	1	110	49	157	1.79e-24	91.7
MS.gene55544.t1	MTR_4g067270	43.750	112	61	1	1	110	30	141	4.46e-24	90.1
MS.gene55544.t1	MTR_7g074020	45.745	94	51	0	1	94	55	148	5.70e-24	90.1
MS.gene55544.t1	MTR_7g074020	46.970	66	35	0	48	113	29	94	4.93e-13	62.0
MS.gene55544.t1	MTR_8g069915	41.964	112	63	1	1	110	37	148	1.28e-23	89.4
MS.gene55544.t1	MTR_5g079340	41.818	110	63	1	1	110	29	137	3.04e-23	87.8
MS.gene55544.t1	MTR_3g055520	42.202	109	48	1	1	109	77	170	2.27e-22	86.3
MS.gene55544.t1	MTR_6g007613	43.617	94	53	0	1	94	54	147	4.37e-22	85.1
MS.gene55544.t1	MTR_6g007613	43.421	76	43	0	38	113	18	93	2.86e-13	62.4
MS.gene55544.t1	MTR_3g067610	42.727	110	59	1	1	110	30	135	1.81e-21	83.2
MS.gene55544.t1	MTR_3g067610	48.333	60	31	0	47	106	3	62	5.48e-11	56.2
MS.gene55544.t1	MTR_1g046950	38.393	112	67	1	1	110	29	140	2.71e-21	82.8
MS.gene55544.t1	MTR_3g055480	63.636	55	20	0	57	111	53	107	4.37e-21	81.3
MS.gene55544.t1	MTR_5g092810	43.243	111	59	3	1	110	422	529	5.19e-21	87.0
MS.gene55544.t1	MTR_3g055585	41.284	109	49	1	1	109	77	170	1.43e-20	81.6
MS.gene55544.t1	MTR_7g106710	42.727	110	60	2	1	110	465	571	2.21e-20	85.1
MS.gene55544.t1	MTR_3g055510	59.016	61	25	0	48	108	71	131	4.53e-20	79.7
MS.gene55544.t1	MTR_1g047100	35.398	113	72	1	1	112	29	141	3.95e-19	77.0
MS.gene55544.t1	MTR_6g079570	37.719	114	69	2	1	113	51	163	4.64e-19	77.8
MS.gene55544.t1	MTR_3g051770	40.517	116	62	2	1	110	413	527	5.15e-19	81.3
MS.gene55544.t1	MTR_8g095440	39.091	110	64	2	1	110	360	466	1.03e-18	80.5
MS.gene55544.t1	MTR_4g132070	40.741	108	60	3	4	110	424	528	1.08e-18	80.1
MS.gene55544.t1	MTR_7g089760	42.982	114	63	1	1	112	30	143	1.71e-18	75.9
MS.gene55544.t1	MTR_1g026190	37.500	112	64	3	1	110	412	519	2.01e-18	79.3
MS.gene55544.t1	MTR_5g009830	39.286	112	62	3	1	110	396	503	2.56e-18	79.3
MS.gene55544.t1	MTR_8g036075	39.831	118	63	3	1	110	74	191	2.75e-18	76.3
MS.gene55544.t1	MTR_4g107490	38.393	112	64	4	1	110	403	511	2.84e-18	79.0
MS.gene55544.t1	MTR_1g096490	41.071	112	59	3	1	110	360	466	2.96e-18	79.0
MS.gene55544.t1	MTR_7g075040	38.655	119	64	3	1	110	72	190	3.93e-18	75.9
MS.gene55544.t1	MTR_7g090450	40.909	110	61	2	5	110	103	212	4.01e-18	76.3
MS.gene55544.t1	MTR_1g055255	38.182	110	65	2	1	110	454	560	6.18e-18	78.2
MS.gene55544.t1	MTR_3g098070	37.273	110	66	2	1	110	359	465	9.15e-18	77.8
MS.gene55544.t1	MTR_3g098090	37.273	110	66	2	1	110	362	468	1.46e-17	77.0
MS.gene55544.t1	MTR_8g099095	37.500	112	64	3	1	110	396	503	5.55e-17	75.5
MS.gene55544.t1	MTR_4g086260	36.364	110	68	1	1	110	82	189	8.64e-17	72.4
MS.gene55544.t1	MTR_4g115170	39.496	119	54	2	10	110	98	216	1.05e-16	72.8
MS.gene55544.t1	MTR_5g099240	36.364	110	67	2	1	110	354	460	1.54e-16	73.9
MS.gene55544.t1	MTR_5g099240	36.364	110	67	2	1	110	426	532	1.66e-16	73.9
MS.gene55544.t1	MTR_5g008705	31.481	108	74	0	5	112	23	130	1.98e-16	70.1
MS.gene55544.t1	MTR_0028s0170	38.679	106	63	2	5	110	412	515	2.14e-16	73.6
MS.gene55544.t1	MTR_1g054865	38.614	101	59	2	10	110	500	597	3.43e-16	73.2
MS.gene55544.t1	MTR_7g068710	38.235	102	62	1	9	110	394	494	4.34e-16	72.8
MS.gene55544.t1	MTR_5g089320	37.736	106	64	2	5	110	402	505	5.97e-16	72.4
MS.gene55544.t1	MTR_1g041150	36.364	110	67	2	1	110	448	554	7.80e-16	72.0
MS.gene55544.t1	MTR_4g132040	34.234	111	69	3	1	110	425	532	1.22e-15	71.6
MS.gene55544.t1	MTR_5g017550	37.168	113	64	2	2	111	74	182	1.67e-15	68.9
MS.gene55544.t1	MTR_5g008695	33.333	111	72	1	1	109	2	112	1.79e-15	67.0
MS.gene55544.t1	MTR_3g089090	31.304	115	68	2	1	110	30	138	1.99e-15	67.8
MS.gene55544.t1	MTR_3g089070	31.304	115	68	2	1	110	31	139	2.03e-15	67.8
MS.gene55544.t1	MTR_5g017510	40.000	95	50	2	20	111	93	183	5.57e-15	67.4
MS.gene55544.t1	MTR_5g017560	40.000	95	50	2	20	111	93	183	5.57e-15	67.4
MS.gene55544.t1	MTR_2g098890	40.351	114	64	2	1	110	89	202	1.60e-14	66.6
MS.gene55544.t1	MTR_7g106710	37.838	111	61	3	1	111	465	567	2.78e-14	67.8
MS.gene55544.t1	MTR_1g052530	32.110	109	73	1	4	112	385	492	2.98e-14	67.8
MS.gene55544.t1	MTR_4g103650	33.043	115	67	3	1	111	27	135	6.22e-14	63.5
MS.gene55544.t1	MTR_7g091890	30.357	112	77	1	1	112	388	498	6.87e-14	66.6
MS.gene55544.t1	MTR_4g103655	33.043	115	67	3	1	111	31	139	7.79e-14	63.5
MS.gene55544.t1	MTR_4g066660	33.333	108	69	3	4	111	405	509	3.85e-13	64.3
MS.gene55544.t1	MTR_4g103630	33.654	104	59	3	12	111	42	139	6.69e-13	61.2
MS.gene55544.t1	MTR_3g083470	28.906	128	65	1	10	111	91	218	6.90e-13	62.8
MS.gene55544.t1	MTR_5g089440	36.364	99	60	2	13	110	80	176	2.28e-12	60.8
MS.gene55544.t1	MTR_4g082050	44.595	74	41	0	37	110	65	138	2.73e-12	59.7
MS.gene55544.t1	MTR_5g027000	29.245	106	75	0	1	106	47	152	4.88e-12	59.3
MS.gene55544.t1	MTR_6g023460	27.523	109	78	1	3	111	35	142	1.47e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55544.t1	AT3G43810	100.000	113	0	0	1	113	1	113	5.47e-79	228
MS.gene55544.t1	AT3G43810	100.000	113	0	0	1	113	1	113	5.47e-79	228
MS.gene55544.t1	AT3G43810	100.000	113	0	0	1	113	37	149	9.00e-79	228
MS.gene55544.t1	AT3G43810	45.455	77	41	1	37	113	1	76	4.50e-14	64.3
MS.gene55544.t1	AT3G43810	100.000	112	0	0	1	112	37	148	1.51e-78	230
MS.gene55544.t1	AT3G43810	45.455	77	41	1	37	113	1	76	7.50e-14	65.1
MS.gene55544.t1	AT5G21274	99.115	113	1	0	1	113	37	149	2.64e-78	227
MS.gene55544.t1	AT5G21274	45.455	77	41	1	37	113	1	76	4.46e-14	64.3
MS.gene55544.t1	AT2G27030	99.115	113	1	0	1	113	37	149	3.11e-78	228
MS.gene55544.t1	AT2G27030	45.455	77	41	1	37	113	1	76	1.36e-13	63.9
MS.gene55544.t1	AT3G56800	99.115	113	1	0	1	113	37	149	3.18e-78	227
MS.gene55544.t1	AT3G56800	45.455	77	41	1	37	113	1	76	4.55e-14	64.3
MS.gene55544.t1	AT2G27030	99.115	113	1	0	1	113	37	149	3.18e-78	227
MS.gene55544.t1	AT2G27030	45.455	77	41	1	37	113	1	76	4.55e-14	64.3
MS.gene55544.t1	AT2G41110	99.115	113	1	0	1	113	37	149	3.18e-78	227
MS.gene55544.t1	AT2G41110	45.455	77	41	1	37	113	1	76	4.55e-14	64.3
MS.gene55544.t1	AT2G41110	99.115	113	1	0	1	113	49	161	8.10e-78	226
MS.gene55544.t1	AT2G41110	39.326	89	41	2	37	113	1	88	6.49e-11	56.2
MS.gene55544.t1	AT1G66410	97.345	113	3	0	1	113	1	113	1.18e-77	224
MS.gene55544.t1	AT1G66410	97.345	113	3	0	1	113	1	113	1.18e-77	224
MS.gene55544.t1	AT1G66410	97.345	113	3	0	1	113	47	159	1.62e-77	226
MS.gene55544.t1	AT5G37780	97.345	113	3	0	1	113	37	149	1.84e-77	225
MS.gene55544.t1	AT5G37780	47.692	65	34	0	49	113	12	76	1.04e-13	63.5
MS.gene55544.t1	AT1G66410	97.345	113	3	0	1	113	37	149	1.84e-77	225
MS.gene55544.t1	AT1G66410	47.692	65	34	0	49	113	12	76	1.04e-13	63.5
MS.gene55544.t1	AT5G37780	97.345	113	3	0	1	113	24	136	1.94e-77	224
MS.gene55544.t1	AT5G37780	97.345	113	3	0	1	113	52	164	5.12e-77	224
MS.gene55544.t1	AT5G37780	97.345	113	3	0	1	113	63	175	5.13e-77	225
MS.gene55544.t1	AT3G22930	76.577	111	26	0	1	111	60	170	3.56e-61	185
MS.gene55544.t1	AT3G22930	46.774	62	33	0	49	110	35	96	1.94e-11	58.2
MS.gene55544.t1	AT4G14640	72.973	111	30	0	1	111	20	130	3.64e-59	178
MS.gene55544.t1	AT4G14640	72.973	111	30	0	1	111	38	148	6.19e-59	178
MS.gene55544.t1	AT2G41090	65.487	113	36	1	1	113	37	146	5.74e-44	142
MS.gene55544.t1	AT2G41090	45.161	62	34	0	49	110	12	73	5.18e-11	57.0
MS.gene55544.t1	AT2G41100	53.077	130	44	2	1	113	1	130	4.13e-36	122
MS.gene55544.t1	AT2G41100	59.016	61	22	1	1	61	91	148	9.90e-16	69.7
MS.gene55544.t1	AT2G41100	53.077	130	44	2	1	113	91	220	5.89e-35	121
MS.gene55544.t1	AT2G41100	46.032	126	52	2	1	110	2	127	3.45e-30	109
MS.gene55544.t1	AT2G41100	59.016	61	22	1	1	61	181	238	4.78e-15	69.3
MS.gene55544.t1	AT2G41100	53.077	130	44	2	1	113	91	220	5.89e-35	121
MS.gene55544.t1	AT2G41100	46.032	126	52	2	1	110	2	127	3.45e-30	109
MS.gene55544.t1	AT2G41100	59.016	61	22	1	1	61	181	238	4.78e-15	69.3
MS.gene55544.t1	AT2G41100	53.077	130	44	2	1	113	91	220	5.89e-35	121
MS.gene55544.t1	AT2G41100	46.032	126	52	2	1	110	2	127	3.45e-30	109
MS.gene55544.t1	AT2G41100	59.016	61	22	1	1	61	181	238	4.78e-15	69.3
MS.gene55544.t1	AT2G41100	53.077	130	44	2	1	113	126	255	1.15e-34	121
MS.gene55544.t1	AT2G41100	46.032	126	52	2	1	110	37	162	6.98e-30	109
MS.gene55544.t1	AT2G41100	59.016	61	22	1	1	61	216	273	5.99e-15	69.3
MS.gene55544.t1	AT2G41100	44.595	74	40	1	37	110	1	73	8.55e-13	63.2
MS.gene55544.t1	AT2G41100	53.077	130	44	2	1	113	126	255	1.15e-34	121
MS.gene55544.t1	AT2G41100	46.032	126	52	2	1	110	37	162	6.98e-30	109
MS.gene55544.t1	AT2G41100	59.016	61	22	1	1	61	216	273	5.99e-15	69.3
MS.gene55544.t1	AT2G41100	44.595	74	40	1	37	110	1	73	8.55e-13	63.2
MS.gene55544.t1	AT4G14640	70.423	71	21	0	1	71	38	108	1.19e-33	113
MS.gene55544.t1	AT3G22930	71.831	71	20	0	1	71	60	130	2.04e-33	113
MS.gene55544.t1	AT3G22930	46.774	62	33	0	49	110	35	96	5.80e-12	58.5
MS.gene55544.t1	AT1G62820	46.018	113	59	1	1	113	38	148	3.77e-32	110
MS.gene55544.t1	AT1G12310	46.018	113	59	1	1	113	38	148	1.04e-31	109
MS.gene55544.t1	AT3G51920	47.321	112	59	0	1	112	37	148	1.78e-31	108
MS.gene55544.t1	AT1G32250	43.966	116	59	1	1	110	41	156	5.41e-30	105
MS.gene55544.t1	AT3G50360	45.455	110	60	0	1	110	52	161	8.46e-29	102
MS.gene55544.t1	AT3G50360	45.714	70	38	0	44	113	22	91	8.12e-14	64.3
MS.gene55544.t1	AT4G37010	43.636	110	62	0	1	110	52	161	2.96e-26	96.3
MS.gene55544.t1	AT4G37010	43.636	110	62	0	1	110	56	165	3.00e-26	96.3
MS.gene55544.t1	AT3G03000	43.396	106	59	1	8	112	52	157	1.09e-25	94.7
MS.gene55544.t1	AT1G18530	41.739	115	59	2	1	110	32	143	9.54e-25	92.0
MS.gene55544.t1	AT1G66400	44.144	111	60	1	3	111	42	152	1.11e-24	92.0
MS.gene55544.t1	AT1G24620	46.429	112	59	1	1	112	62	172	4.08e-24	91.3
MS.gene55544.t1	AT1G24620	45.902	61	33	0	49	109	37	97	9.14e-11	56.6
MS.gene55544.t1	AT1G76040	43.636	110	60	2	1	110	203	310	4.17e-23	91.3
MS.gene55544.t1	AT1G76040	43.636	110	60	2	1	110	203	310	4.17e-23	91.3
MS.gene55544.t1	AT1G18210	40.367	109	61	1	2	110	49	153	9.52e-23	87.4
MS.gene55544.t1	AT1G18210	40.367	109	61	1	2	110	49	153	9.52e-23	87.4
MS.gene55544.t1	AT3G25600	40.870	115	60	2	1	110	37	148	1.04e-22	87.0
MS.gene55544.t1	AT5G37770	41.228	114	63	1	1	110	42	155	1.62e-22	86.3
MS.gene55544.t1	AT5G37770	41.228	114	63	1	1	110	42	155	1.62e-22	86.3
MS.gene55544.t1	AT1G76040	43.636	110	60	2	1	110	441	548	1.87e-22	90.9
MS.gene55544.t1	AT1G05990	44.248	113	60	2	1	110	30	142	2.66e-21	83.2
MS.gene55544.t1	AT1G73630	37.838	111	65	1	2	112	46	152	8.16e-21	82.0
MS.gene55544.t1	AT2G43290	40.171	117	63	3	1	110	90	206	1.99e-20	82.4
MS.gene55544.t1	AT4G21940	42.342	111	60	3	1	110	431	538	4.02e-20	84.3
MS.gene55544.t1	AT4G21940	39.506	81	46	1	36	113	390	470	8.13e-11	57.8
MS.gene55544.t1	AT4G21940	42.342	111	60	3	1	110	431	538	4.72e-20	84.3
MS.gene55544.t1	AT4G21940	39.506	81	46	1	36	113	390	470	8.86e-11	57.8
MS.gene55544.t1	AT2G15680	38.182	110	66	1	1	110	75	182	1.02e-19	79.7
MS.gene55544.t1	AT3G59440	41.071	112	63	2	1	110	76	186	1.58e-19	79.7
MS.gene55544.t1	AT5G23580	40.909	110	62	2	1	110	352	458	2.43e-19	82.0
MS.gene55544.t1	AT4G03290	41.228	114	62	2	2	110	31	144	2.61e-19	78.2
MS.gene55544.t1	AT1G61950	41.071	112	60	3	1	110	429	536	3.86e-19	81.6
MS.gene55544.t1	AT5G19360	42.991	107	57	3	5	110	402	505	8.54e-19	80.5
MS.gene55544.t1	AT2G41100	50.649	77	37	1	37	113	1	76	2.30e-18	75.5
MS.gene55544.t1	AT2G41100	59.016	61	22	1	1	61	37	94	1.57e-16	70.5
MS.gene55544.t1	AT5G17470	37.719	114	68	2	1	112	27	139	2.56e-18	75.1
MS.gene55544.t1	AT4G12860	40.541	111	64	1	2	110	31	141	3.01e-18	75.1
MS.gene55544.t1	AT3G20410	38.182	110	66	2	1	110	421	528	3.02e-18	79.0
MS.gene55544.t1	AT3G20410	38.182	110	66	2	1	110	421	528	3.02e-18	79.0
MS.gene55544.t1	AT5G12180	42.056	107	58	3	5	110	407	510	4.31e-18	78.6
MS.gene55544.t1	AT1G35670	38.182	110	65	2	1	110	356	462	5.04e-18	78.6
MS.gene55544.t1	AT4G04720	39.640	111	63	3	1	110	409	516	6.25e-18	78.2
MS.gene55544.t1	AT4G04720	39.640	111	63	3	1	110	409	516	6.25e-18	78.2
MS.gene55544.t1	AT4G09570	39.286	112	61	3	1	110	355	461	8.00e-18	77.8
MS.gene55544.t1	AT3G03400	41.837	98	54	2	8	103	38	134	9.09e-18	73.6
MS.gene55544.t1	AT4G23650	39.286	112	62	3	1	110	408	515	1.10e-17	77.4
MS.gene55544.t1	AT4G23650	43.478	69	36	1	46	111	377	445	1.28e-11	60.1
MS.gene55544.t1	AT3G10660	37.273	110	66	2	1	110	516	622	1.32e-17	77.4
MS.gene55544.t1	AT3G10660	37.273	110	66	2	1	110	516	622	1.32e-17	77.4
MS.gene55544.t1	AT3G10190	41.071	112	63	3	1	110	95	205	1.38e-17	74.7
MS.gene55544.t1	AT1G74740	37.168	113	68	3	1	112	389	499	1.52e-17	77.0
MS.gene55544.t1	AT4G38230	37.273	110	66	2	1	110	210	316	2.30e-17	75.9
MS.gene55544.t1	AT4G38230	37.273	110	66	2	1	110	354	460	2.33e-17	76.6
MS.gene55544.t1	AT4G38230	37.273	110	66	2	1	110	354	460	2.33e-17	76.6
MS.gene55544.t1	AT4G38230	37.273	110	66	2	1	110	384	490	2.35e-17	76.6
MS.gene55544.t1	AT2G36180	42.105	114	62	3	1	111	25	137	2.38e-17	72.8
MS.gene55544.t1	AT1G50700	36.364	110	68	2	1	110	403	510	2.84e-17	76.3
MS.gene55544.t1	AT3G07490	41.071	112	64	1	1	110	30	141	3.11e-17	72.8
MS.gene55544.t1	AT2G17290	37.273	110	66	2	1	110	415	521	4.98e-17	75.5
MS.gene55544.t1	AT2G17290	37.273	110	66	2	1	110	415	521	4.98e-17	75.5
MS.gene55544.t1	AT4G04740	40.777	103	57	3	9	110	406	505	5.13e-17	75.5
MS.gene55544.t1	AT4G04740	40.777	103	57	3	9	110	406	505	5.13e-17	75.5
MS.gene55544.t1	AT4G04740	40.777	103	57	3	9	110	406	505	5.13e-17	75.5
MS.gene55544.t1	AT4G04740	40.777	103	57	3	9	110	406	505	5.13e-17	75.5
MS.gene55544.t1	AT4G04740	40.777	103	57	3	9	110	406	505	5.13e-17	75.5
MS.gene55544.t1	AT4G04740	40.777	103	57	3	9	110	406	505	5.13e-17	75.5
MS.gene55544.t1	AT5G42380	38.889	108	65	1	4	110	77	184	6.09e-17	72.8
MS.gene55544.t1	AT5G42380	43.548	62	35	0	49	110	49	110	5.41e-11	57.0
MS.gene55544.t1	AT5G04870	35.455	110	68	2	1	110	480	586	2.71e-16	73.6
MS.gene55544.t1	AT3G03410	36.607	112	60	2	3	112	27	129	3.09e-16	69.7
MS.gene55544.t1	AT4G35310	35.455	110	68	2	1	110	427	533	8.45e-16	72.0
MS.gene55544.t1	AT4G35310	35.455	110	68	2	1	110	427	533	8.45e-16	72.0
MS.gene55544.t1	AT5G12480	35.398	113	71	2	1	112	389	500	8.49e-16	72.0
MS.gene55544.t1	AT5G12480	35.398	113	71	2	1	112	295	406	8.79e-16	72.0
MS.gene55544.t1	AT4G04695	36.283	113	68	3	1	112	361	470	9.45e-16	72.0
MS.gene55544.t1	AT4G04700	38.739	111	64	3	1	110	361	468	1.25e-15	71.6
MS.gene55544.t1	AT3G57530	36.937	111	66	3	1	110	393	500	2.14e-15	70.9
MS.gene55544.t1	AT2G38910	35.514	107	66	2	4	110	467	570	2.43e-15	70.9
MS.gene55544.t1	AT3G50770	34.513	113	69	2	3	110	91	203	2.44e-15	68.9
MS.gene55544.t1	AT3G50770	44.118	68	38	0	46	113	61	128	2.13e-13	63.5
MS.gene55544.t1	AT3G51850	34.545	110	71	1	1	110	384	492	6.33e-15	69.7
MS.gene55544.t1	AT1G18890	36.842	114	67	4	1	112	393	503	2.78e-14	67.8
MS.gene55544.t1	AT2G41410	36.111	108	67	2	6	111	101	208	4.97e-14	65.5
MS.gene55544.t1	AT4G04710	36.449	107	64	3	5	110	379	482	7.34e-14	66.6
MS.gene55544.t1	AT4G04710	36.449	107	64	3	5	110	352	455	7.41e-14	66.6
MS.gene55544.t1	AT4G04710	36.449	107	64	3	5	110	366	469	7.75e-14	66.6
MS.gene55544.t1	AT5G19450	32.743	113	74	2	1	112	387	498	1.66e-13	65.5
MS.gene55544.t1	AT5G19450	32.743	113	74	2	1	112	387	498	1.66e-13	65.5
MS.gene55544.t1	AT1G50700	33.663	101	65	2	10	110	438	536	1.85e-13	65.5
MS.gene55544.t1	AT4G04710	36.697	109	63	4	5	110	379	484	1.00e-12	63.2
MS.gene55544.t1	AT2G31500	32.456	114	72	4	1	111	396	507	5.54e-12	61.2
MS.gene55544.t1	AT2G41860	30.000	110	76	1	1	110	384	492	1.29e-11	60.1
MS.gene55544.t1	AT2G41860	30.000	110	76	1	1	110	384	492	1.31e-11	60.1
MS.gene55544.t1	AT3G47480	44.615	65	35	1	47	110	114	178	2.84e-11	57.8
MS.gene55544.t1	AT4G04740	38.202	89	51	3	9	96	406	491	5.92e-11	58.2
MS.gene55544.t1	AT4G21940	39.506	81	46	1	36	113	390	470	8.08e-11	57.8

Find 34 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAGCTGAAAGAGGCGTTTC+GGG	0.325103	6.2:-17795363	MS.gene55544:CDS
CCCAACTGAGGCAGAGCTTC+AGG	0.327616	6.2:-17795486	MS.gene55544:CDS
GGAACTGTTATGCGTTCATT+GGG	0.343588	6.2:-17795515	None:intergenic
TGGAACTGTTATGCGTTCAT+TGG	0.360083	6.2:-17795516	None:intergenic
AGGAGCTGAAAGAGGCGTTT+CGG	0.391958	6.2:-17795364	MS.gene55544:CDS
TCCTGAAGCTCTGCCTCAGT+TGG	0.419465	6.2:+17795485	None:intergenic
AAACTACGAGGAATTTGTTA+AGG	0.424446	6.2:-17795204	MS.gene55544:CDS
CCTGAAGCTCTGCCTCAGTT+GGG	0.457983	6.2:+17795486	None:intergenic
ATCCGTGAGGCTGATGTTGA+TGG	0.484617	6.2:-17795239	MS.gene55544:CDS
CGCCTCTTTCAGCTCCTCCT+CGG	0.490822	6.2:+17795370	None:intergenic
CCCTGAGTTTCTTAACCTCA+TGG	0.495316	6.2:-17795417	MS.gene55544:CDS
CATCGGTGAGCTTCTCGCCA+AGG	0.508143	6.2:+17795279	None:intergenic
CATCTCATCGACTTCTTCAT+CGG	0.523419	6.2:+17795262	None:intergenic
GCCATGAGGTTAAGAAACTC+AGG	0.525054	6.2:+17795416	None:intergenic
CTCCGAGGAGGAGCTGAAAG+AGG	0.542657	6.2:-17795372	MS.gene55544:CDS
GGAATTTGTTAAGGTCATGA+TGG	0.543508	6.2:-17795195	MS.gene55544:CDS
CGCCATGTGATGACCAACCT+TGG	0.544826	6.2:-17795296	MS.gene55544:CDS
CGCCAAGGTTGGTCATCACA+TGG	0.556784	6.2:+17795294	None:intergenic
GGTGAGCTTCTCGCCAAGGT+TGG	0.567744	6.2:+17795283	None:intergenic
CCTTCATCTTCCTTGCCATG+AGG	0.583416	6.2:+17795402	None:intergenic
CCTCATGGCAAGGAAGATGA+AGG	0.591761	6.2:-17795402	MS.gene55544:CDS
ATCAATGAAGTAGATGCTGA+TGG	0.594359	6.2:-17795458	MS.gene55544:CDS
CACCATCAACATCAGCCTCA+CGG	0.595594	6.2:+17795237	None:intergenic
AGTTTCTTAACCTCATGGCA+AGG	0.615477	6.2:-17795412	MS.gene55544:CDS
GAGGCTGATGTTGATGGTGA+TGG	0.620773	6.2:-17795233	MS.gene55544:CDS
GAAGTAGATGCTGATGGGAA+TGG	0.624358	6.2:-17795452	MS.gene55544:CDS
CCATGAGGTTAAGAAACTCA+GGG	0.643314	6.2:+17795417	None:intergenic
GAACTGTTATGCGTTCATTG+GGG	0.667564	6.2:-17795514	None:intergenic
GATGAAGGACACTGACTCCG+AGG	0.671085	6.2:-17795387	MS.gene55544:CDS
TCAATGAAGTAGATGCTGAT+GGG	0.676011	6.2:-17795457	MS.gene55544:CDS
GAAGGACACTGACTCCGAGG+AGG	0.706486	6.2:-17795384	MS.gene55544:CDS
ATTGGGGCAAAACCCAACTG+AGG	0.728233	6.2:-17795498	MS.gene55544:CDS
TGATGGTCAAATAAACTACG+AGG	0.754916	6.2:-17795216	MS.gene55544:CDS
AGTCGATGAGATGATCCGTG+AGG	0.760734	6.2:-17795252	MS.gene55544:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAACTACGAGGAATTTGTTA+AGG	-	chr6.2:17795489-17795508	MS.gene55544:CDS	30.0%
	ATCAATGAAGTAGATGCTGA+TGG	-	chr6.2:17795235-17795254	MS.gene55544:CDS	35.0%
	TCAATGAAGTAGATGCTGAT+GGG	-	chr6.2:17795236-17795255	MS.gene55544:CDS	35.0%
	TGATGGTCAAATAAACTACG+AGG	-	chr6.2:17795477-17795496	MS.gene55544:CDS	35.0%
!	GTTTTTGACAAGGATCAGAA+CGG	-	chr6.2:17795352-17795371	MS.gene55544:CDS	35.0%
!!	GGAATTTGTTAAGGTCATGA+TGG	-	chr6.2:17795498-17795517	MS.gene55544:CDS	35.0%
	AGTTTCTTAACCTCATGGCA+AGG	-	chr6.2:17795281-17795300	MS.gene55544:CDS	40.0%
	CCATGAGGTTAAGAAACTCA+GGG	+	chr6.2:17795279-17795298	None:intergenic	40.0%
!!	CATCTCATCGACTTCTTCAT+CGG	+	chr6.2:17795434-17795453	None:intergenic	40.0%
	CCCTGAGTTTCTTAACCTCA+TGG	-	chr6.2:17795276-17795295	MS.gene55544:CDS	45.0%
	GAAGTAGATGCTGATGGGAA+TGG	-	chr6.2:17795241-17795260	MS.gene55544:CDS	45.0%
	GCCATGAGGTTAAGAAACTC+AGG	+	chr6.2:17795280-17795299	None:intergenic	45.0%
	AGTCGATGAGATGATCCGTG+AGG	-	chr6.2:17795441-17795460	MS.gene55544:CDS	50.0%
	ATCCGTGAGGCTGATGTTGA+TGG	-	chr6.2:17795454-17795473	MS.gene55544:CDS	50.0%
	ATTGGGGCAAAACCCAACTG+AGG	-	chr6.2:17795195-17795214	MS.gene55544:CDS	50.0%
	CACCATCAACATCAGCCTCA+CGG	+	chr6.2:17795459-17795478	None:intergenic	50.0%
	CCTCATGGCAAGGAAGATGA+AGG	-	chr6.2:17795291-17795310	MS.gene55544:CDS	50.0%
	CCTTCATCTTCCTTGCCATG+AGG	+	chr6.2:17795294-17795313	None:intergenic	50.0%
!!	AGGAGCTGAAAGAGGCGTTT+CGG	-	chr6.2:17795329-17795348	MS.gene55544:CDS	50.0%
!!	GAGGCTGATGTTGATGGTGA+TGG	-	chr6.2:17795460-17795479	MS.gene55544:CDS	50.0%
!!!	GGCGTTTCGGGTTTTTGACA+AGG	-	chr6.2:17795342-17795361	MS.gene55544:CDS	50.0%
	CCTGAAGCTCTGCCTCAGTT+GGG	+	chr6.2:17795210-17795229	None:intergenic	55.0%
	CGCCATGTGATGACCAACCT+TGG	-	chr6.2:17795397-17795416	MS.gene55544:CDS	55.0%
	TCCTGAAGCTCTGCCTCAGT+TGG	+	chr6.2:17795211-17795230	None:intergenic	55.0%
!	CGCCAAGGTTGGTCATCACA+TGG	+	chr6.2:17795402-17795421	None:intergenic	55.0%
!!	GATGAAGGACACTGACTCCG+AGG	-	chr6.2:17795306-17795325	MS.gene55544:CDS	55.0%
!!	GGAGCTGAAAGAGGCGTTTC+GGG	-	chr6.2:17795330-17795349	MS.gene55544:CDS	55.0%
	CATCGGTGAGCTTCTCGCCA+AGG	+	chr6.2:17795417-17795436	None:intergenic	60.0%
	CCCAACTGAGGCAGAGCTTC+AGG	-	chr6.2:17795207-17795226	MS.gene55544:CDS	60.0%
	CGCCTCTTTCAGCTCCTCCT+CGG	+	chr6.2:17795326-17795345	None:intergenic	60.0%
	CTCCGAGGAGGAGCTGAAAG+AGG	-	chr6.2:17795321-17795340	MS.gene55544:CDS	60.0%
	GGTGAGCTTCTCGCCAAGGT+TGG	+	chr6.2:17795413-17795432	None:intergenic	60.0%
!!	GAAGGACACTGACTCCGAGG+AGG	-	chr6.2:17795309-17795328	MS.gene55544:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	17795187	17795528	17795187	ID=MS.gene55544
chr6.2	mRNA	17795187	17795528	17795187	ID=MS.gene55544.t1;Parent=MS.gene55544
chr6.2	exon	17795187	17795528	17795187	ID=MS.gene55544.t1.exon1;Parent=MS.gene55544.t1
chr6.2	CDS	17795187	17795528	17795187	ID=cds.MS.gene55544.t1;Parent=MS.gene55544.t1

Gene Sequence	>MS.gene55544 ATGCGTTCATTGGGGCAAAACCCAACTGAGGCAGAGCTTCAGGACATGATCAATGAAGTAGATGCTGATGGGAATGGTACTATTGACTTCCCTGAGTTTCTTAACCTCATGGCAAGGAAGATGAAGGACACTGACTCCGAGGAGGAGCTGAAAGAGGCGTTTCGGGTTTTTGACAAGGATCAGAACGGTTTCATTTCTGCTGCTGAGCTTCGCCATGTGATGACCAACCTTGGCGAGAAGCTCACCGATGAAGAAGTCGATGAGATGATCCGTGAGGCTGATGTTGATGGTGATGGTCAAATAAACTACGAGGAATTTGTTAAGGTCATGATGGCTAAATGA
Protein sequence	>MS.gene55544.t1 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK