Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32193.t1 | XP_003608219.1 | 85.7 | 196 | 27 | 1 | 1 | 196 | 1 | 195 | 8.30E-56 | 226.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32193.t1 | G7JRS5 | 85.7 | 196 | 27 | 1 | 1 | 196 | 1 | 195 | 6.0e-56 | 226.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049861 | MS.gene32193 | 0.833233 | 6.00E-56 | -1.69E-46 |
| MS.gene050114 | MS.gene32193 | 0.845583 | 3.71E-59 | -1.69E-46 |
| MS.gene050277 | MS.gene32193 | 0.811489 | 6.82E-51 | -1.69E-46 |
| MS.gene050288 | MS.gene32193 | 0.800233 | 1.59E-48 | -1.69E-46 |
| MS.gene050317 | MS.gene32193 | 0.83604 | 1.18E-56 | -1.69E-46 |
| MS.gene050320 | MS.gene32193 | 0.819223 | 1.30E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene32193 | 0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene32193 | 0.803924 | 2.76E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene32193 | 0.836772 | 7.69E-57 | -1.69E-46 |
| MS.gene051748 | MS.gene32193 | 0.844421 | 7.64E-59 | -1.69E-46 |
| MS.gene051756 | MS.gene32193 | 0.806076 | 9.80E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene32193 | 0.801163 | 1.02E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene32193 | 0.854764 | 9.90E-62 | -1.69E-46 |
| MS.gene052434 | MS.gene32193 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene052543 | MS.gene32193 | 0.845137 | 4.90E-59 | -1.69E-46 |
| MS.gene052818 | MS.gene32193 | -0.808313 | 3.29E-50 | -1.69E-46 |
| MS.gene052856 | MS.gene32193 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene32193 | 0.804732 | 1.88E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene32193 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene32193 | 0.826357 | 2.84E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene32193 | 0.800156 | 1.65E-48 | -1.69E-46 |
| MS.gene056605 | MS.gene32193 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene32193 | 0.823538 | 1.31E-53 | -1.69E-46 |
| MS.gene056752 | MS.gene32193 | 0.810964 | 8.87E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene32193 | 0.805147 | 1.54E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene32193 | 0.821028 | 5.02E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene32193 | 0.811577 | 6.53E-51 | -1.69E-46 |
| MS.gene056992 | MS.gene32193 | 0.814523 | 1.48E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene32193 | 0.805454 | 1.32E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene32193 | 0.837616 | 4.68E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene32193 | 0.809178 | 2.15E-50 | -1.69E-46 |
| MS.gene05781 | MS.gene32193 | 0.81851 | 1.89E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene32193 | 0.843762 | 1.15E-58 | -1.69E-46 |
| MS.gene058238 | MS.gene32193 | 0.856491 | 3.10E-62 | -1.69E-46 |
| MS.gene059360 | MS.gene32193 | 0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene32193 | 0.801544 | 8.56E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene32193 | 0.825066 | 5.74E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene32193 | 0.856606 | 2.87E-62 | -1.69E-46 |
| MS.gene060586 | MS.gene32193 | 0.812926 | 3.32E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene32193 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene060830 | MS.gene32193 | 0.801197 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32193 | MS.gene55120 | PPI |
| MS.gene32193 | MS.gene24697 | PPI |
| MS.gene07741 | MS.gene32193 | PPI |
| MS.gene32193 | MS.gene050299 | PPI |
| MS.gene32193 | MS.gene037044 | PPI |
| MS.gene32193 | MS.gene007196 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32193.t1 | MTR_4g090910 | 94.898 | 196 | 9 | 1 | 1 | 196 | 1 | 195 | 1.43e-126 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32193.t1 | AT1G11240 | 49.057 | 159 | 76 | 3 | 14 | 171 | 21 | 175 | 1.24e-27 | 103 |
Find 31 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCAGCTGCTTCTTCTTCT+TGG | 0.186002 | 4.4:+22878169 | None:intergenic |
| AATGGCTTCTTGTTATTTAT+AGG | 0.201940 | 4.4:+22876819 | None:intergenic |
| GATCTCAAAGATTATGTTAC+TGG | 0.251622 | 4.4:-22878434 | MS.gene32193:CDS |
| AGCTTCTTCTTGTTGTTTGT+TGG | 0.267711 | 4.4:+22878376 | None:intergenic |
| TAACAAGAAGCCATTTAAAA+AGG | 0.309156 | 4.4:-22876811 | MS.gene32193:CDS |
| TTGGAAAGAGAACTTGCTTA+TGG | 0.326372 | 4.4:-22878240 | MS.gene32193:CDS |
| AGGTACCGTCACTTGTTTCC+CGG | 0.345185 | 4.4:+22876723 | None:intergenic |
| CTAGGGAAACTCTCTTCGTC+AGG | 0.359375 | 4.4:+22876909 | None:intergenic |
| ACGCAACGAGGAACGCATAA+AGG | 0.384606 | 4.4:-22878342 | MS.gene32193:intron |
| TGGAAAGAGAACTTGCTTAT+GGG | 0.391137 | 4.4:-22878239 | MS.gene32193:CDS |
| GCAATATCAGAGCGCAAAAC+TGG | 0.417440 | 4.4:-22878515 | MS.gene32193:CDS |
| AAACAAGTTCAATCTATTGC+TGG | 0.433583 | 4.4:-22878147 | MS.gene32193:intron |
| GGGGCTTCTTTCCTTTCGCT+AGG | 0.442475 | 4.4:+22876891 | None:intergenic |
| TATTGCTGCTTCTTCATCCA+TGG | 0.449284 | 4.4:+22878532 | None:intergenic |
| ATGGGAGGACACTGCTGGTG+GGG | 0.467882 | 4.4:+22876872 | None:intergenic |
| GCAGTTTCAGTGTCATCAGT+TGG | 0.485085 | 4.4:+22878207 | None:intergenic |
| AAAAGGAAAGGAAAGAAGCC+GGG | 0.511053 | 4.4:-22876741 | MS.gene32193:CDS |
| GATGGGAGGACACTGCTGGT+GGG | 0.523396 | 4.4:+22876871 | None:intergenic |
| GGAAAGAGAACTTGCTTATG+GGG | 0.538034 | 4.4:-22878238 | MS.gene32193:CDS |
| TTTATCAGCTACAACAGGAT+GGG | 0.538526 | 4.4:+22876854 | None:intergenic |
| GGATGGGAGGACACTGCTGG+TGG | 0.539822 | 4.4:+22876870 | None:intergenic |
| GGGCTTCTTTCCTTTCGCTA+GGG | 0.544145 | 4.4:+22876892 | None:intergenic |
| ACAGGATGGGAGGACACTGC+TGG | 0.582988 | 4.4:+22876867 | None:intergenic |
| ATCTTTCTCATCGAAAGAGA+TGG | 0.597691 | 4.4:+22878454 | None:intergenic |
| ATCAGCTACAACAGGATGGG+AGG | 0.599440 | 4.4:+22876857 | None:intergenic |
| AAGAGAGTTTCCCTAGCGAA+AGG | 0.607065 | 4.4:-22876902 | MS.gene32193:CDS |
| GTTTCAGTGTCATCAGTTGG+TGG | 0.620306 | 4.4:+22878210 | None:intergenic |
| TAGGGAAACTCTCTTCGTCA+GGG | 0.626002 | 4.4:+22876910 | None:intergenic |
| GAAAGAGAACTTGCTTATGG+GGG | 0.681530 | 4.4:-22878237 | MS.gene32193:CDS |
| TATTAGACGCAAACGCAACG+AGG | 0.682542 | 4.4:-22878354 | MS.gene32193:CDS |
| AGAAGCCGGGAAACAAGTGA+CGG | 0.722721 | 4.4:-22876728 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATGATTATATCAATAAA+AGG | + | chr4.4:22877162-22877181 | None:intergenic | 15.0% |
| !! | ACATGATTATATCAATAAAA+GGG | + | chr4.4:22877161-22877180 | None:intergenic | 15.0% |
| !! | AGAAATAAATTGACAAATTA+AGG | + | chr4.4:22877458-22877477 | None:intergenic | 15.0% |
| !! | GAAATAAATTGACAAATTAA+GGG | + | chr4.4:22877457-22877476 | None:intergenic | 15.0% |
| !! | TTTATTGATATAATCATGTT+TGG | - | chr4.4:22877162-22877181 | MS.gene32193:intron | 15.0% |
| !!! | AAAATTGAATCTTTAAGAAA+AGG | + | chr4.4:22876953-22876972 | None:intergenic | 15.0% |
| !!! | AAATTGAATCTTTAAGAAAA+GGG | + | chr4.4:22876952-22876971 | None:intergenic | 15.0% |
| !! | AAAGAAGTAAAAGAGAAAAA+AGG | - | chr4.4:22878503-22878522 | MS.gene32193:CDS | 20.0% |
| !!! | AATTGAATCTTTAAGAAAAG+GGG | + | chr4.4:22876951-22876970 | None:intergenic | 20.0% |
| !!! | TAAGCTATTTCTATAACATA+AGG | - | chr4.4:22877251-22877270 | MS.gene32193:intron | 20.0% |
| ! | AGTAAAAGAGAAAAAAGGAA+AGG | - | chr4.4:22878508-22878527 | MS.gene32193:CDS | 25.0% |
| ! | ATTGCTTAATTAAGTGCTTA+TGG | - | chr4.4:22877189-22877208 | MS.gene32193:intron | 25.0% |
| ! | TAACAAGAAGCCATTTAAAA+AGG | - | chr4.4:22878450-22878469 | MS.gene32193:CDS | 25.0% |
| ! | TATAATCTGTTTATGCCAAT+AGG | - | chr4.4:22877374-22877393 | MS.gene32193:intron | 25.0% |
| ! | TGAAAGAAATAGAGTACATT+GGG | - | chr4.4:22877662-22877681 | MS.gene32193:intron | 25.0% |
| !! | TGAAATGTATTTTATTGCAG+AGG | - | chr4.4:22876995-22877014 | MS.gene32193:intron | 25.0% |
| !!! | AATGGCTTCTTGTTATTTAT+AGG | + | chr4.4:22878445-22878464 | None:intergenic | 25.0% |
| AAACAAGTTCAATCTATTGC+TGG | - | chr4.4:22877114-22877133 | MS.gene32193:intron | 30.0% | |
| CTTATTGTATAAACTCTCTG+AGG | + | chr4.4:22877331-22877350 | None:intergenic | 30.0% | |
| GATCTCAAAGATTATGTTAC+TGG | - | chr4.4:22876827-22876846 | MS.gene32193:CDS | 30.0% | |
| GTGAAAGAAATAGAGTACAT+TGG | - | chr4.4:22877661-22877680 | MS.gene32193:intron | 30.0% | |
| TCAAAACTGTTTGACCTATT+AGG | - | chr4.4:22877579-22877598 | MS.gene32193:intron | 30.0% | |
| TGCTTAGTGTTAGTTGTAAA+AGG | - | chr4.4:22877502-22877521 | MS.gene32193:intron | 30.0% | |
| TTTACAACTAACACTAAGCA+TGG | + | chr4.4:22877502-22877521 | None:intergenic | 30.0% | |
| ! | ATCGTTTTCATATGTCTTTG+TGG | + | chr4.4:22878296-22878315 | None:intergenic | 30.0% |
| ! | GTGATTTTTCTTACTGCATT+TGG | - | chr4.4:22878225-22878244 | MS.gene32193:CDS | 30.0% |
| ! | TATTTTATTGCAGAGGAAGT+TGG | - | chr4.4:22877002-22877021 | MS.gene32193:intron | 30.0% |
| ! | TCTCTTTTACTTCTTTGCTT+TGG | + | chr4.4:22878499-22878518 | None:intergenic | 30.0% |
| ! | TTACTCCTTGATGTTTTACT+AGG | - | chr4.4:22877540-22877559 | MS.gene32193:intron | 30.0% |
| ! | TTCTTTTTATCAGCTACAAC+AGG | + | chr4.4:22878415-22878434 | None:intergenic | 30.0% |
| ! | TTGATGTTTTACTAGGACTT+GGG | - | chr4.4:22877547-22877566 | MS.gene32193:intron | 30.0% |
| ! | TTTGTTGCAGCCTTTTTAAA+TGG | + | chr4.4:22878463-22878482 | None:intergenic | 30.0% |
| AAAAAGGAAAGGAAAGAAGC+CGG | - | chr4.4:22878519-22878538 | MS.gene32193:CDS | 35.0% | |
| AAGAAATAGAGTACATTGGG+AGG | - | chr4.4:22877665-22877684 | MS.gene32193:intron | 35.0% | |
| AATACAAAACCCTCCTCATT+TGG | - | chr4.4:22877719-22877738 | MS.gene32193:intron | 35.0% | |
| ACCTATATGAGCTTACCTAT+TGG | + | chr4.4:22877392-22877411 | None:intergenic | 35.0% | |
| AGAAATAGAGTACATTGGGA+GGG | - | chr4.4:22877666-22877685 | MS.gene32193:intron | 35.0% | |
| ATACAAAACCCTCCTCATTT+GGG | - | chr4.4:22877720-22877739 | MS.gene32193:intron | 35.0% | |
| ATCTTTCTCATCGAAAGAGA+TGG | + | chr4.4:22876810-22876829 | None:intergenic | 35.0% | |
| CAAGTCCTAGTAAAACATCA+AGG | + | chr4.4:22877548-22877567 | None:intergenic | 35.0% | |
| GAACTAAAAAGTTGTACTGG+AGG | - | chr4.4:22877744-22877763 | MS.gene32193:intron | 35.0% | |
| TAAAAAGTTGTACTGGAGGA+GGG | - | chr4.4:22877748-22877767 | MS.gene32193:intron | 35.0% | |
| TTCATCATCAGACACATCTA+AGG | + | chr4.4:22877429-22877448 | None:intergenic | 35.0% | |
| TTTATCAGCTACAACAGGAT+GGG | + | chr4.4:22878410-22878429 | None:intergenic | 35.0% | |
| ! | CTTGATGTTTTACTAGGACT+TGG | - | chr4.4:22877546-22877565 | MS.gene32193:intron | 35.0% |
| ! | GAATCTTTAAGAAAAGGGGT+AGG | + | chr4.4:22876947-22876966 | None:intergenic | 35.0% |
| ! | TGGAAAGAGAACTTGCTTAT+GGG | - | chr4.4:22877022-22877041 | MS.gene32193:intron | 35.0% |
| ! | TTGGAAAGAGAACTTGCTTA+TGG | - | chr4.4:22877021-22877040 | MS.gene32193:intron | 35.0% |
| ! | TTTTATCAGCTACAACAGGA+TGG | + | chr4.4:22878411-22878430 | None:intergenic | 35.0% |
| !! | AGCTTCTTCTTGTTGTTTGT+TGG | + | chr4.4:22876888-22876907 | None:intergenic | 35.0% |
| !! | TAAGGCTTTGTTTGGAAGTT+TGG | + | chr4.4:22877977-22877996 | None:intergenic | 35.0% |
| AAAAGGAAAGGAAAGAAGCC+GGG | - | chr4.4:22878520-22878539 | MS.gene32193:CDS | 40.0% | |
| AACTCGCAACAAAGCCTAAT+AGG | + | chr4.4:22877596-22877615 | None:intergenic | 40.0% | |
| ATGTAGTGTAGAGGGCTATT+TGG | - | chr4.4:22878181-22878200 | MS.gene32193:CDS | 40.0% | |
| CATCAGACACATCTAAGGAT+TGG | + | chr4.4:22877424-22877443 | None:intergenic | 40.0% | |
| CCAAACAAAGCCTTAGTTGT+CGG | - | chr4.4:22877982-22878001 | MS.gene32193:intron | 40.0% | |
| CTAAAAAGTTGTACTGGAGG+AGG | - | chr4.4:22877747-22877766 | MS.gene32193:intron | 40.0% | |
| GAAATAGAGTACATTGGGAG+GGG | - | chr4.4:22877667-22877686 | MS.gene32193:intron | 40.0% | |
| GCCAATAGGTAAGCTCATAT+AGG | - | chr4.4:22877388-22877407 | MS.gene32193:intron | 40.0% | |
| GCGGAAAATATAGAGGGAAA+TGG | + | chr4.4:22877921-22877940 | None:intergenic | 40.0% | |
| GGGGAACTAAAAAGTTGTAC+TGG | - | chr4.4:22877741-22877760 | MS.gene32193:intron | 40.0% | |
| TACAAAACCCTCCTCATTTG+GGG | - | chr4.4:22877721-22877740 | MS.gene32193:intron | 40.0% | |
| ! | CTTTGTTTGGAAGTTTGGAG+GGG | + | chr4.4:22877972-22877991 | None:intergenic | 40.0% |
| ! | GAAAGAGAACTTGCTTATGG+GGG | - | chr4.4:22877024-22877043 | MS.gene32193:intron | 40.0% |
| ! | GGAAAGAGAACTTGCTTATG+GGG | - | chr4.4:22877023-22877042 | MS.gene32193:intron | 40.0% |
| !! | ATTAGGCTTTGTTGCGAGTT+TGG | - | chr4.4:22877596-22877615 | MS.gene32193:intron | 40.0% |
| !! | GCTTTGTTTGGAAGTTTGGA+GGG | + | chr4.4:22877973-22877992 | None:intergenic | 40.0% |
| !!! | CTTTTTAGTTCCCCCAAATG+AGG | + | chr4.4:22877735-22877754 | None:intergenic | 40.0% |
| AAGAGAGTTTCCCTAGCGAA+AGG | - | chr4.4:22878359-22878378 | MS.gene32193:CDS | 45.0% | |
| AAGCCTTAGTTGTCGGTAGT+TGG | - | chr4.4:22877989-22878008 | MS.gene32193:intron | 45.0% | |
| ACAAAACCCTCCTCATTTGG+GGG | - | chr4.4:22877722-22877741 | MS.gene32193:intron | 45.0% | |
| ACACTACATGTACGGCATAG+TGG | + | chr4.4:22878170-22878189 | None:intergenic | 45.0% | |
| AGCCCTCTACACTACATGTA+CGG | + | chr4.4:22878178-22878197 | None:intergenic | 45.0% | |
| ATGCCGTACATGTAGTGTAG+AGG | - | chr4.4:22878172-22878191 | MS.gene32193:CDS | 45.0% | |
| GCAATATCAGAGCGCAAAAC+TGG | - | chr4.4:22876746-22876765 | MS.gene32193:CDS | 45.0% | |
| GCAGTTTCAGTGTCATCAGT+TGG | + | chr4.4:22877057-22877076 | None:intergenic | 45.0% | |
| GTTTCAGTGTCATCAGTTGG+TGG | + | chr4.4:22877054-22877073 | None:intergenic | 45.0% | |
| TAGGGAAACTCTCTTCGTCA+GGG | + | chr4.4:22878354-22878373 | None:intergenic | 45.0% | |
| TAGGGGGCGGAAAATATAGA+GGG | + | chr4.4:22877927-22877946 | None:intergenic | 45.0% | |
| TATTAGACGCAAACGCAACG+AGG | - | chr4.4:22876907-22876926 | MS.gene32193:CDS | 45.0% | |
| TGCCGTACATGTAGTGTAGA+GGG | - | chr4.4:22878173-22878192 | MS.gene32193:CDS | 45.0% | |
| TGTCAGCTGCTTCTTCTTCT+TGG | + | chr4.4:22877095-22877114 | None:intergenic | 45.0% | |
| TTAGGGGGCGGAAAATATAG+AGG | + | chr4.4:22877928-22877947 | None:intergenic | 45.0% | |
| TTAGTTCCCCCAAATGAGGA+GGG | + | chr4.4:22877731-22877750 | None:intergenic | 45.0% | |
| ! | TTGTACTGGAGGAGGGTTTT+GGG | - | chr4.4:22877755-22877774 | MS.gene32193:intron | 45.0% |
| ! | TTTAGTTCCCCCAAATGAGG+AGG | + | chr4.4:22877732-22877751 | None:intergenic | 45.0% |
| !! | CCGACAACTAAGGCTTTGTT+TGG | + | chr4.4:22877985-22878004 | None:intergenic | 45.0% |
| !! | GGCTTTGTTTGGAAGTTTGG+AGG | + | chr4.4:22877974-22877993 | None:intergenic | 45.0% |
| !!! | GACGGTTTTGGAAAAGAGGA+AGG | - | chr4.4:22877633-22877652 | MS.gene32193:intron | 45.0% |
| ACGCAACGAGGAACGCATAA+AGG | - | chr4.4:22876919-22876938 | MS.gene32193:CDS | 50.0% | |
| ATAGAGTACATTGGGAGGGG+AGG | - | chr4.4:22877670-22877689 | MS.gene32193:intron | 50.0% | |
| ATCAGCTACAACAGGATGGG+AGG | + | chr4.4:22878407-22878426 | None:intergenic | 50.0% | |
| CAGCCAACTACCGACAACTA+AGG | + | chr4.4:22877995-22878014 | None:intergenic | 50.0% | |
| CTAGGGAAACTCTCTTCGTC+AGG | + | chr4.4:22878355-22878374 | None:intergenic | 50.0% | |
| GACTCCCAAAGTGGGATAGT+GGG | + | chr4.4:22878118-22878137 | None:intergenic | 50.0% | |
| GAGGGGTAGGAAAGGCTTTA+GGG | + | chr4.4:22877945-22877964 | None:intergenic | 50.0% | |
| GCTACCCACTATCCCACTTT+GGG | - | chr4.4:22878111-22878130 | MS.gene32193:intron | 50.0% | |
| GGGCTTCTTTCCTTTCGCTA+GGG | + | chr4.4:22878372-22878391 | None:intergenic | 50.0% | |
| TACGGCATAGTGGTCAATCC+CGG | + | chr4.4:22878160-22878179 | None:intergenic | 50.0% | |
| TAGAGTACATTGGGAGGGGA+GGG | - | chr4.4:22877671-22877690 | MS.gene32193:intron | 50.0% | |
| TGAGGGGTAGGAAAGGCTTT+AGG | + | chr4.4:22877946-22877965 | None:intergenic | 50.0% | |
| TGCTACCCACTATCCCACTT+TGG | - | chr4.4:22878110-22878129 | MS.gene32193:intron | 50.0% | |
| TGTTTGGAAGTTTGGAGGGG+AGG | + | chr4.4:22877969-22877988 | None:intergenic | 50.0% | |
| ! | AGGGGTAGGAAAGGCTTTAG+GGG | + | chr4.4:22877944-22877963 | None:intergenic | 50.0% |
| ! | CACTATCCCACTTTGGGAGT+CGG | - | chr4.4:22878117-22878136 | MS.gene32193:intron | 50.0% |
| ! | GAAAAGCCGACTCCCAAAGT+GGG | + | chr4.4:22878126-22878145 | None:intergenic | 50.0% |
| ! | GCTTTGTTGCGAGTTTGGAG+GGG | - | chr4.4:22877601-22877620 | MS.gene32193:intron | 50.0% |
| ! | GTTGTACTGGAGGAGGGTTT+TGG | - | chr4.4:22877754-22877773 | MS.gene32193:intron | 50.0% |
| ! | TAGTGGGTAGCATGGAGTGA+TGG | + | chr4.4:22878102-22878121 | None:intergenic | 50.0% |
| ! | TGTACTGGAGGAGGGTTTTG+GGG | - | chr4.4:22877756-22877775 | MS.gene32193:intron | 50.0% |
| !! | AAGTGGGATAGTGGGTAGCA+TGG | + | chr4.4:22878110-22878129 | None:intergenic | 50.0% |
| !! | AGGCTTTGTTGCGAGTTTGG+AGG | - | chr4.4:22877599-22877618 | MS.gene32193:intron | 50.0% |
| !! | GGCTTTGTTGCGAGTTTGGA+GGG | - | chr4.4:22877600-22877619 | MS.gene32193:intron | 50.0% |
| !!! | AGGGGACGGTTTTGGAAAAG+AGG | - | chr4.4:22877629-22877648 | MS.gene32193:intron | 50.0% |
| AAGTTTGGAGGGGAGGTGAG+GGG | + | chr4.4:22877962-22877981 | None:intergenic | 55.0% | |
| CGACTCCCAAAGTGGGATAG+TGG | + | chr4.4:22878119-22878138 | None:intergenic | 55.0% | |
| CGAGTTTGGAGGGGAAGAGA+GGG | - | chr4.4:22877610-22877629 | MS.gene32193:intron | 55.0% | |
| GAAGTTTGGAGGGGAGGTGA+GGG | + | chr4.4:22877963-22877982 | None:intergenic | 55.0% | |
| GAGTTTGGAGGGGAAGAGAG+GGG | - | chr4.4:22877611-22877630 | MS.gene32193:intron | 55.0% | |
| GGGGCTTCTTTCCTTTCGCT+AGG | + | chr4.4:22878373-22878392 | None:intergenic | 55.0% | |
| GTCAATCCCGGATAGCAGAG+CGG | + | chr4.4:22878148-22878167 | None:intergenic | 55.0% | |
| GTTGGCTGTAGCACTAGCGT+TGG | - | chr4.4:22878007-22878026 | MS.gene32193:intron | 55.0% | |
| TCCCACGTTCCAACGCATCT+GGG | + | chr4.4:22878060-22878079 | None:intergenic | 55.0% | |
| TGGGTAGCATGGAGTGATGG+CGG | + | chr4.4:22878099-22878118 | None:intergenic | 55.0% | |
| ! | GCTTTTCCGCTCTGCTATCC+GGG | - | chr4.4:22878139-22878158 | MS.gene32193:intron | 55.0% |
| ! | GGAAAAGCCGACTCCCAAAG+TGG | + | chr4.4:22878127-22878146 | None:intergenic | 55.0% |
| ! | GGCTTTTCCGCTCTGCTATC+CGG | - | chr4.4:22878138-22878157 | MS.gene32193:intron | 55.0% |
| !! | GGGGTAGGAAAGGCTTTAGG+GGG | + | chr4.4:22877943-22877962 | None:intergenic | 55.0% |
| !! | GTACTGGAGGAGGGTTTTGG+GGG | - | chr4.4:22877757-22877776 | MS.gene32193:intron | 55.0% |
| !! | GTAGGAAAGGCTTTAGGGGG+CGG | + | chr4.4:22877940-22877959 | None:intergenic | 55.0% |
| !!! | GGTTTTGGGGGGGTTTTGGA+GGG | - | chr4.4:22877769-22877788 | MS.gene32193:intron | 55.0% |
| !!! | TACTGGAGGAGGGTTTTGGG+GGG | - | chr4.4:22877758-22877777 | MS.gene32193:intron | 55.0% |
| ACAGGATGGGAGGACACTGC+TGG | + | chr4.4:22878397-22878416 | None:intergenic | 60.0% | |
| ACATTGGGAGGGGAGGGCTT+TGG | - | chr4.4:22877677-22877696 | MS.gene32193:intron | 60.0% | |
| AGGTCACACTCGACTCCGCT+AGG | + | chr4.4:22878035-22878054 | None:intergenic | 60.0% | |
| ATGGGAGGACACTGCTGGTG+GGG | + | chr4.4:22878392-22878411 | None:intergenic | 60.0% | |
| ATTGGGAGGGGAGGGCTTTG+GGG | - | chr4.4:22877679-22877698 | MS.gene32193:intron | 60.0% | |
| CATTGGGAGGGGAGGGCTTT+GGG | - | chr4.4:22877678-22877697 | MS.gene32193:intron | 60.0% | |
| CCACGTTCCAACGCATCTGG+GGG | + | chr4.4:22878058-22878077 | None:intergenic | 60.0% | |
| CCCACGTTCCAACGCATCTG+GGG | + | chr4.4:22878059-22878078 | None:intergenic | 60.0% | |
| CCCCAGATGCGTTGGAACGT+GGG | - | chr4.4:22878056-22878075 | MS.gene32193:intron | 60.0% | |
| CTCCCACGTTCCAACGCATC+TGG | + | chr4.4:22878061-22878080 | None:intergenic | 60.0% | |
| GATGGGAGGACACTGCTGGT+GGG | + | chr4.4:22878393-22878412 | None:intergenic | 60.0% | |
| GCGAGTTTGGAGGGGAAGAG+AGG | - | chr4.4:22877609-22877628 | MS.gene32193:intron | 60.0% | |
| GGAAGTTTGGAGGGGAGGTG+AGG | + | chr4.4:22877964-22877983 | None:intergenic | 60.0% | |
| TTGGAGGGGAAGAGAGGGGA+CGG | - | chr4.4:22877615-22877634 | MS.gene32193:intron | 60.0% | |
| ! | GCACTAGCGTTGGAGCCTAG+CGG | - | chr4.4:22878017-22878036 | MS.gene32193:intron | 60.0% |
| ! | GGGAAGAGAGGGGACGGTTT+TGG | - | chr4.4:22877621-22877640 | MS.gene32193:intron | 60.0% |
| !!! | ACTGGAGGAGGGTTTTGGGG+GGG | - | chr4.4:22877759-22877778 | MS.gene32193:intron | 60.0% |
| !!! | GGAGGGTTTTGGGGGGGTTT+TGG | - | chr4.4:22877765-22877784 | MS.gene32193:intron | 60.0% |
| !!! | GGGTTTTGGGGGGGTTTTGG+AGG | - | chr4.4:22877768-22877787 | MS.gene32193:intron | 60.0% |
| CCCCCAGATGCGTTGGAACG+TGG | - | chr4.4:22878055-22878074 | MS.gene32193:intron | 65.0% | |
| CGTTCCAACGCATCTGGGGG+AGG | + | chr4.4:22878055-22878074 | None:intergenic | 65.0% | |
| GGATGGGAGGACACTGCTGG+TGG | + | chr4.4:22878394-22878413 | None:intergenic | 65.0% | |
| GGGGAGGTGAGGGGTAGGAA+AGG | + | chr4.4:22877953-22877972 | None:intergenic | 65.0% | |
| GTGACCTCCCCCAGATGCGT+TGG | - | chr4.4:22878048-22878067 | MS.gene32193:intron | 65.0% | |
| TTGGAGGGGAGGTGAGGGGT+AGG | + | chr4.4:22877958-22877977 | None:intergenic | 65.0% | |
| ! | TTGGGAGGGGAGGGCTTTGG+GGG | - | chr4.4:22877680-22877699 | MS.gene32193:intron | 65.0% |
| CGTGGGAGTAGCGCCCTTCG+CGG | - | chr4.4:22878073-22878092 | MS.gene32193:intron | 70.0% | |
| !! | GGAGTGATGGCGGCCGCGAA+GGG | + | chr4.4:22878089-22878108 | None:intergenic | 70.0% |
| !! | TGGAGTGATGGCGGCCGCGA+AGG | + | chr4.4:22878090-22878109 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 22876731 | 22878552 | 22876731 | ID=MS.gene32193 |
| chr4.4 | mRNA | 22876731 | 22878552 | 22876731 | ID=MS.gene32193.t1;Parent=MS.gene32193 |
| chr4.4 | exon | 22878343 | 22878552 | 22878343 | ID=MS.gene32193.t1.exon1;Parent=MS.gene32193.t1 |
| chr4.4 | CDS | 22878343 | 22878552 | 22878343 | ID=cds.MS.gene32193.t1;Parent=MS.gene32193.t1 |
| chr4.4 | exon | 22878148 | 22878268 | 22878148 | ID=MS.gene32193.t1.exon2;Parent=MS.gene32193.t1 |
| chr4.4 | CDS | 22878148 | 22878268 | 22878148 | ID=cds.MS.gene32193.t1;Parent=MS.gene32193.t1 |
| chr4.4 | exon | 22876731 | 22876990 | 22876731 | ID=MS.gene32193.t1.exon3;Parent=MS.gene32193.t1 |
| chr4.4 | CDS | 22876731 | 22876990 | 22876731 | ID=cds.MS.gene32193.t1;Parent=MS.gene32193.t1 |
| Gene Sequence |
| Protein sequence |
