Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052891.t1 | XP_013461323.1 | 99.2 | 253 | 2 | 0 | 1 | 253 | 1 | 253 | 2.20E-125 | 458.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052891.t1 | Q6DBN1 | 64.1 | 234 | 77 | 2 | 23 | 249 | 1 | 234 | 3.0e-75 | 283.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052891.t1 | I3T836 | 99.2 | 253 | 2 | 0 | 1 | 253 | 1 | 253 | 1.6e-125 | 458.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052891.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028080 | MS.gene052891 | PPI |
| MS.gene052891 | MS.gene028078 | PPI |
| MS.gene052891 | MS.gene72831 | PPI |
| MS.gene052891 | MS.gene070084 | PPI |
| MS.gene84986 | MS.gene052891 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052891.t1 | MTR_3g088660 | 99.209 | 253 | 2 | 0 | 1 | 253 | 1 | 253 | 0.0 | 520 |
| MS.gene052891.t1 | MTR_3g072160 | 27.184 | 206 | 141 | 4 | 35 | 236 | 58 | 258 | 6.57e-15 | 72.8 |
| MS.gene052891.t1 | MTR_3g072160 | 27.723 | 202 | 137 | 4 | 39 | 236 | 25 | 221 | 1.16e-14 | 71.6 |
| MS.gene052891.t1 | MTR_3g088560 | 31.469 | 143 | 93 | 2 | 70 | 211 | 29 | 167 | 9.25e-14 | 68.6 |
| MS.gene052891.t1 | MTR_3g088560 | 31.469 | 143 | 93 | 2 | 70 | 211 | 81 | 219 | 1.44e-13 | 68.9 |
| MS.gene052891.t1 | MTR_3g088560 | 31.469 | 143 | 93 | 2 | 70 | 211 | 96 | 234 | 3.82e-13 | 67.8 |
| MS.gene052891.t1 | MTR_7g094910 | 25.828 | 151 | 108 | 1 | 77 | 227 | 523 | 669 | 4.57e-13 | 68.9 |
| MS.gene052891.t1 | MTR_7g094900 | 25.828 | 151 | 108 | 1 | 77 | 227 | 542 | 688 | 5.01e-13 | 68.9 |
| MS.gene052891.t1 | MTR_5g015680 | 29.605 | 152 | 100 | 3 | 95 | 241 | 79 | 228 | 5.84e-13 | 68.2 |
| MS.gene052891.t1 | MTR_3g088560 | 28.571 | 175 | 118 | 3 | 70 | 241 | 151 | 321 | 5.87e-13 | 67.8 |
| MS.gene052891.t1 | MTR_7g094490 | 27.568 | 185 | 113 | 5 | 74 | 243 | 201 | 379 | 7.90e-13 | 67.8 |
| MS.gene052891.t1 | MTR_5g015680 | 29.605 | 152 | 100 | 3 | 95 | 241 | 118 | 267 | 8.27e-13 | 67.8 |
| MS.gene052891.t1 | MTR_1g072650 | 27.568 | 185 | 113 | 5 | 74 | 243 | 205 | 383 | 1.54e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052891.t1 | AT4G08455 | 65.234 | 256 | 79 | 3 | 4 | 249 | 6 | 261 | 3.47e-118 | 338 |
| MS.gene052891.t1 | AT1G01640 | 31.902 | 163 | 108 | 2 | 80 | 241 | 3 | 163 | 1.47e-19 | 84.0 |
| MS.gene052891.t1 | AT3G56230 | 29.592 | 196 | 127 | 5 | 49 | 241 | 86 | 273 | 2.18e-19 | 85.5 |
| MS.gene052891.t1 | AT1G01640 | 31.902 | 163 | 108 | 2 | 80 | 241 | 24 | 184 | 2.70e-19 | 83.6 |
| MS.gene052891.t1 | AT4G37610 | 28.634 | 227 | 147 | 6 | 30 | 246 | 5 | 226 | 4.76e-14 | 71.2 |
| MS.gene052891.t1 | AT3G06190 | 27.717 | 184 | 114 | 4 | 74 | 243 | 196 | 374 | 6.42e-13 | 68.2 |
| MS.gene052891.t1 | AT1G21780 | 26.455 | 189 | 129 | 4 | 58 | 242 | 139 | 321 | 1.19e-11 | 63.9 |
| MS.gene052891.t1 | AT1G21780 | 26.455 | 189 | 129 | 4 | 58 | 242 | 139 | 321 | 1.19e-11 | 63.9 |
| MS.gene052891.t1 | AT3G06190 | 28.485 | 165 | 101 | 3 | 74 | 226 | 196 | 355 | 4.29e-11 | 62.4 |
| MS.gene052891.t1 | AT5G19330 | 25.153 | 163 | 115 | 2 | 78 | 240 | 539 | 694 | 7.89e-11 | 62.4 |
| MS.gene052891.t1 | AT2G40450 | 29.213 | 178 | 118 | 3 | 83 | 252 | 26 | 203 | 9.71e-11 | 60.1 |
Find 68 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAAACTAATAGGTTAC+AGG | 0.263882 | 3.1:+71738092 | None:intergenic |
| TTGCAAGTACCGGCGTCGTC+GGG | 0.297670 | 3.1:+71738880 | None:intergenic |
| ATTTGATCTCCAAACTGAAT+TGG | 0.305803 | 3.1:-71738026 | MS.gene052891:CDS |
| GGCAGGGATCATGGAGAATA+TGG | 0.312855 | 3.1:-71737935 | MS.gene052891:CDS |
| TGCAGCCACGCTAGGGTTAT+AGG | 0.318170 | 3.1:-71737812 | None:intergenic |
| TACTTTCTCTCCTTCCATTC+CGG | 0.321591 | 3.1:-71738713 | MS.gene052891:CDS |
| TCAAGCATGGCTCTGAAAAC+TGG | 0.323355 | 3.1:+71738234 | None:intergenic |
| CTAATAGGTTACAGGCCATT+TGG | 0.355315 | 3.1:+71738100 | None:intergenic |
| AGCTTTCTCCCAATTCAGTT+TGG | 0.363821 | 3.1:+71738017 | None:intergenic |
| TGAAGCTTATCTTGCCAAAC+AGG | 0.369315 | 3.1:-71737842 | MS.gene052891:CDS |
| CCAATTGCAAGATGCAGCTT+TGG | 0.375309 | 3.1:-71737956 | MS.gene052891:CDS |
| CTGACGTTTGAATTCCTCTT+CGG | 0.381082 | 3.1:+71738831 | None:intergenic |
| AGACTTTGGATTTGAGGTCT+TGG | 0.386775 | 3.1:+71738806 | None:intergenic |
| CCAAAGCTGCATCTTGCAAT+TGG | 0.392400 | 3.1:+71737956 | None:intergenic |
| GGAAGGAGACTTTGGATTTG+AGG | 0.393809 | 3.1:+71738800 | None:intergenic |
| GGCTGCAGTATTAACCTGTT+TGG | 0.400932 | 3.1:+71737828 | None:intergenic |
| TTTGATCTCCAAACTGAATT+GGG | 0.405372 | 3.1:-71738025 | MS.gene052891:CDS |
| TACAGGCCATTTGGTTATCA+AGG | 0.418138 | 3.1:+71738109 | None:intergenic |
| CGAAACATCAGCAATCTTGA+TGG | 0.418642 | 3.1:+71738182 | None:intergenic |
| GAGAGTGAGGAAGGAGACTT+TGG | 0.418723 | 3.1:+71738792 | None:intergenic |
| TGCAGCTTTGGCAGGGATCA+TGG | 0.424391 | 3.1:-71737944 | MS.gene052891:CDS |
| AGCCATGCTTGAGAATGATA+TGG | 0.435569 | 3.1:-71738223 | MS.gene052891:CDS |
| TTGCAAGATGCAGCTTTGGC+AGG | 0.438540 | 3.1:-71737952 | MS.gene052891:CDS |
| GTTAATACTGCAGCCACGCT+AGG | 0.472280 | 3.1:-71737820 | MS.gene052891:CDS |
| GAATTCCTCTTCGGTTTCGT+TGG | 0.472827 | 3.1:+71738840 | None:intergenic |
| TCCTTCCATTCCGGCTCACA+AGG | 0.473877 | 3.1:-71738704 | MS.gene052891:CDS |
| TTTGCAAGTACCGGCGTCGT+CGG | 0.487205 | 3.1:+71738879 | None:intergenic |
| AACGGCCTTGTGAGCCGGAA+TGG | 0.487905 | 3.1:+71738699 | None:intergenic |
| AGCTGCATCTTGCAATTGGT+TGG | 0.493566 | 3.1:+71737960 | None:intergenic |
| AACTAATCCTCGTTTAGTTG+TGG | 0.493649 | 3.1:-71737872 | MS.gene052891:CDS |
| GTATCAGGTGAAGCATCTTA+AGG | 0.500142 | 3.1:-71738064 | MS.gene052891:CDS |
| CTCCATATCATTCTCAAGCA+TGG | 0.507732 | 3.1:+71738221 | None:intergenic |
| ACGAGAACGGCCTTGTGAGC+CGG | 0.512199 | 3.1:+71738694 | None:intergenic |
| AGGAGAAGCGAGAGTGAGGA+AGG | 0.513816 | 3.1:+71738783 | None:intergenic |
| GTCGTCGTCGTAATCGCTCT+CGG | 0.517038 | 3.1:+71738951 | None:intergenic |
| TGAAGATTACACGGAGTTGG+TGG | 0.522112 | 3.1:-71737896 | MS.gene052891:CDS |
| GTAGCATTCTTTGCAAGTAC+CGG | 0.522996 | 3.1:+71738870 | None:intergenic |
| GCCTTGTGAGCCGGAATGGA+AGG | 0.523187 | 3.1:+71738703 | None:intergenic |
| AAATGAAGATTACACGGAGT+TGG | 0.527013 | 3.1:-71737899 | MS.gene052891:CDS |
| AAGGAGAACAAGATCGGTGG+TGG | 0.529952 | 3.1:+71738747 | None:intergenic |
| TGCAAGATGCAGCTTTGGCA+GGG | 0.548196 | 3.1:-71737951 | MS.gene052891:CDS |
| AGCATGCCTTGATAACCAAA+TGG | 0.551457 | 3.1:-71738115 | MS.gene052891:CDS |
| GATCTTGTTCTCCTTCCGTC+CGG | 0.554395 | 3.1:-71738739 | MS.gene052891:CDS |
| CGAAGCCAACGAAACCGAAG+AGG | 0.562358 | 3.1:-71738845 | MS.gene052891:CDS |
| TACACTGTGCAACGGTGCCG+TGG | 0.563730 | 3.1:+71738976 | None:intergenic |
| AGAAAGTATCACCGGACGGA+AGG | 0.567541 | 3.1:+71738728 | None:intergenic |
| TTAATACTGCAGCCACGCTA+GGG | 0.570249 | 3.1:-71737819 | MS.gene052891:CDS |
| AGAATGATATGGAGGAAAGC+CGG | 0.570838 | 3.1:-71738212 | MS.gene052891:CDS |
| CAAGAGGAGAAGCGAGAGTG+AGG | 0.574599 | 3.1:+71738779 | None:intergenic |
| TGCAAGTACCGGCGTCGTCG+GGG | 0.582135 | 3.1:+71738881 | None:intergenic |
| GGCATTGTGTTGATGTGCAA+AGG | 0.583175 | 3.1:+71737981 | None:intergenic |
| CAATCTTGATGGTGCCACTC+CGG | 0.589211 | 3.1:+71738193 | None:intergenic |
| CTCGCAAGAGAGACATCTCA+TGG | 0.590091 | 3.1:+71738915 | None:intergenic |
| AGAACAAGATCGGTGGTGGA+AGG | 0.595036 | 3.1:+71738751 | None:intergenic |
| GGAAGGAGAGAAAGTATCAC+CGG | 0.597919 | 3.1:+71738720 | None:intergenic |
| GATTACGACCCCGACGACGC+CGG | 0.624267 | 3.1:-71738889 | MS.gene052891:CDS |
| GGACGGAAGGAGAACAAGAT+CGG | 0.626611 | 3.1:+71738741 | None:intergenic |
| CATGAGATGTCTCTCTTGCG+AGG | 0.633418 | 3.1:-71738914 | MS.gene052891:CDS |
| AGGGAGGGTACTGACGAGAA+CGG | 0.641189 | 3.1:+71738681 | None:intergenic |
| CATGCTTGAGAATGATATGG+AGG | 0.646700 | 3.1:-71738220 | MS.gene052891:CDS |
| GGAGAGAAAGTATCACCGGA+CGG | 0.661533 | 3.1:+71738724 | None:intergenic |
| GTGGTGGAAGGAGCATCAAG+AGG | 0.662081 | 3.1:+71738763 | None:intergenic |
| TATATTTCCACAACTAAACG+AGG | 0.674137 | 3.1:+71737865 | None:intergenic |
| TCTCGGAGTACACTGTGCAA+CGG | 0.678301 | 3.1:+71738968 | None:intergenic |
| AACAATCAGATAGAATGCCA+CGG | 0.686225 | 3.1:-71738993 | None:intergenic |
| GATATGGAGGAAAGCCGGAG+TGG | 0.686483 | 3.1:-71738207 | MS.gene052891:CDS |
| CGGAAGGAGAACAAGATCGG+TGG | 0.688815 | 3.1:+71738744 | None:intergenic |
| GCATTCCTATAACCCTAGCG+TGG | 0.731788 | 3.1:+71737807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTAAATTAAATCATCAG+TGG | + | chr3.1:71738439-71738458 | None:intergenic | 20.0% |
| !! | ATAAGCAATACATAATAGAA+GGG | + | chr3.1:71738355-71738374 | None:intergenic | 20.0% |
| !! | GTTAAATAATAATAACCATG+TGG | - | chr3.1:71738209-71738228 | MS.gene052891:CDS | 20.0% |
| ! | AGCATTAAAATCATTGAGTA+AGG | + | chr3.1:71738473-71738492 | None:intergenic | 25.0% |
| ! | ATAATAATAACCATGTGGTT+AGG | - | chr3.1:71738214-71738233 | MS.gene052891:CDS | 25.0% |
| ! | CACTAAAAATGAAGATTACA+CGG | - | chr3.1:71738887-71738906 | MS.gene052891:CDS | 25.0% |
| ! | GATAAGCAATACATAATAGA+AGG | + | chr3.1:71738356-71738375 | None:intergenic | 25.0% |
| ! | GCATTAAAATCATTGAGTAA+GGG | + | chr3.1:71738472-71738491 | None:intergenic | 25.0% |
| !! | ACTTTTCTCCTAAAACTAAT+AGG | + | chr3.1:71738710-71738729 | None:intergenic | 25.0% |
| !!! | TGTAATCTTCATTTTTAGTG+AGG | + | chr3.1:71738887-71738906 | None:intergenic | 25.0% |
| AATAAAAAAGGTGAAGAGAG+AGG | + | chr3.1:71738134-71738153 | None:intergenic | 30.0% | |
| ATAAAAAAGGTGAAGAGAGA+GGG | + | chr3.1:71738133-71738152 | None:intergenic | 30.0% | |
| ATTTGATCTCCAAACTGAAT+TGG | - | chr3.1:71738766-71738785 | MS.gene052891:CDS | 30.0% | |
| TATATTTCCACAACTAAACG+AGG | + | chr3.1:71738930-71738949 | None:intergenic | 30.0% | |
| TCCTAAAACTAATAGGTTAC+AGG | + | chr3.1:71738703-71738722 | None:intergenic | 30.0% | |
| TTGAAGTGGTTAACGAATTT+CGG | - | chr3.1:71738237-71738256 | MS.gene052891:CDS | 30.0% | |
| TTTGATCTCCAAACTGAATT+GGG | - | chr3.1:71738767-71738786 | MS.gene052891:CDS | 30.0% | |
| ! | ACATATTCAAGTTCCTATCA+TGG | + | chr3.1:71738302-71738321 | None:intergenic | 30.0% |
| !!! | AGTTTTAGGAGAAAAGTATC+AGG | - | chr3.1:71738713-71738732 | MS.gene052891:CDS | 30.0% |
| AAATGAAGATTACACGGAGT+TGG | - | chr3.1:71738893-71738912 | MS.gene052891:CDS | 35.0% | |
| AACTAATCCTCGTTTAGTTG+TGG | - | chr3.1:71738920-71738939 | MS.gene052891:CDS | 35.0% | |
| AGAGTTAAGGACGAATTGTT+CGG | - | chr3.1:71738270-71738289 | MS.gene052891:intron | 35.0% | |
| ATCTTGTCCACGATCAAATT+GGG | - | chr3.1:71738373-71738392 | MS.gene052891:intron | 35.0% | |
| TATCTTGTCCACGATCAAAT+TGG | - | chr3.1:71738372-71738391 | MS.gene052891:intron | 35.0% | |
| TTATACTCCCAATTTGATCG+TGG | + | chr3.1:71738383-71738402 | None:intergenic | 35.0% | |
| ! | CGATCAAATTGGGAGTATAA+TGG | - | chr3.1:71738383-71738402 | MS.gene052891:intron | 35.0% |
| ! | GGGAGTATAATGGTGTATTA+TGG | - | chr3.1:71738393-71738412 | MS.gene052891:intron | 35.0% |
| !!! | GCCTGTAACCTATTAGTTTT+AGG | - | chr3.1:71738699-71738718 | MS.gene052891:CDS | 35.0% |
| ACATGACGCGATGTTTGAAT+AGG | - | chr3.1:71738524-71738543 | MS.gene052891:intron | 40.0% | |
| AGAATGATATGGAGGAAAGC+CGG | - | chr3.1:71738580-71738599 | MS.gene052891:intron | 40.0% | |
| AGCCATGCTTGAGAATGATA+TGG | - | chr3.1:71738569-71738588 | MS.gene052891:intron | 40.0% | |
| AGCTTTCTCCCAATTCAGTT+TGG | + | chr3.1:71738778-71738797 | None:intergenic | 40.0% | |
| CATGCTTGAGAATGATATGG+AGG | - | chr3.1:71738572-71738591 | MS.gene052891:intron | 40.0% | |
| CGAAACATCAGCAATCTTGA+TGG | + | chr3.1:71738613-71738632 | None:intergenic | 40.0% | |
| CGGTTAAGAGTTGAGAGTTA+AGG | - | chr3.1:71738257-71738276 | MS.gene052891:intron | 40.0% | |
| CTAATAGGTTACAGGCCATT+TGG | + | chr3.1:71738695-71738714 | None:intergenic | 40.0% | |
| CTCCATATCATTCTCAAGCA+TGG | + | chr3.1:71738574-71738593 | None:intergenic | 40.0% | |
| CTGACGTTTGAATTCCTCTT+CGG | + | chr3.1:71737964-71737983 | None:intergenic | 40.0% | |
| GTAGCATTCTTTGCAAGTAC+CGG | + | chr3.1:71737925-71737944 | None:intergenic | 40.0% | |
| TACAGGCCATTTGGTTATCA+AGG | + | chr3.1:71738686-71738705 | None:intergenic | 40.0% | |
| TACTTTCTCTCCTTCCATTC+CGG | - | chr3.1:71738079-71738098 | MS.gene052891:CDS | 40.0% | |
| TGAAGCTTATCTTGCCAAAC+AGG | - | chr3.1:71738950-71738969 | MS.gene052891:CDS | 40.0% | |
| TGTTCGGAAGAATCCATGAT+AGG | - | chr3.1:71738286-71738305 | MS.gene052891:intron | 40.0% | |
| ! | AGACTTTGGATTTGAGGTCT+TGG | + | chr3.1:71737989-71738008 | None:intergenic | 40.0% |
| ! | AGCATGCCTTGATAACCAAA+TGG | - | chr3.1:71738677-71738696 | MS.gene052891:intron | 40.0% |
| ! | GTATCAGGTGAAGCATCTTA+AGG | - | chr3.1:71738728-71738747 | MS.gene052891:CDS | 40.0% |
| AAAAAGGTGAAGAGAGAGGG+AGG | + | chr3.1:71738130-71738149 | None:intergenic | 45.0% | |
| AAAAGGTGAAGAGAGAGGGA+GGG | + | chr3.1:71738129-71738148 | None:intergenic | 45.0% | |
| ACCACTTCAACCTAACCACA+TGG | + | chr3.1:71738227-71738246 | None:intergenic | 45.0% | |
| AGCTGCATCTTGCAATTGGT+TGG | + | chr3.1:71738835-71738854 | None:intergenic | 45.0% | |
| CCAAAGCTGCATCTTGCAAT+TGG | + | chr3.1:71738839-71738858 | None:intergenic | 45.0% | |
| CCAATTGCAAGATGCAGCTT+TGG | - | chr3.1:71738836-71738855 | MS.gene052891:CDS | 45.0% | |
| GAATTCCTCTTCGGTTTCGT+TGG | + | chr3.1:71737955-71737974 | None:intergenic | 45.0% | |
| GGAAGGAGACTTTGGATTTG+AGG | + | chr3.1:71737995-71738014 | None:intergenic | 45.0% | |
| GGCTGCAGTATTAACCTGTT+TGG | + | chr3.1:71738967-71738986 | None:intergenic | 45.0% | |
| TGAAGATTACACGGAGTTGG+TGG | - | chr3.1:71738896-71738915 | MS.gene052891:CDS | 45.0% | |
| TTAATACTGCAGCCACGCTA+GGG | - | chr3.1:71738973-71738992 | MS.gene052891:CDS | 45.0% | |
| ! | GGCATTGTGTTGATGTGCAA+AGG | + | chr3.1:71738814-71738833 | None:intergenic | 45.0% |
| !! | ACCATGTGGTTAGGTTGAAG+TGG | - | chr3.1:71738223-71738242 | MS.gene052891:CDS | 45.0% |
| !! | GGAAGGAGAGAAAGTATCAC+CGG | + | chr3.1:71738075-71738094 | None:intergenic | 45.0% |
| !! | TCAAGCATGGCTCTGAAAAC+TGG | + | chr3.1:71738561-71738580 | None:intergenic | 45.0% |
| !! | GAAAAATAAAAAAATAAAAA+AGG | + | chr3.1:71738146-71738165 | None:intergenic | 5.0% |
| AAGGAGAACAAGATCGGTGG+TGG | + | chr3.1:71738048-71738067 | None:intergenic | 50.0% | |
| CATGAGATGTCTCTCTTGCG+AGG | - | chr3.1:71737878-71737897 | MS.gene052891:CDS | 50.0% | |
| CTCGCAAGAGAGACATCTCA+TGG | + | chr3.1:71737880-71737899 | None:intergenic | 50.0% | |
| GAGAGTGAGGAAGGAGACTT+TGG | + | chr3.1:71738003-71738022 | None:intergenic | 50.0% | |
| GATCTTGTTCTCCTTCCGTC+CGG | - | chr3.1:71738053-71738072 | MS.gene052891:CDS | 50.0% | |
| GGACGGAAGGAGAACAAGAT+CGG | + | chr3.1:71738054-71738073 | None:intergenic | 50.0% | |
| GGCAGGGATCATGGAGAATA+TGG | - | chr3.1:71738857-71738876 | MS.gene052891:CDS | 50.0% | |
| GTTAATACTGCAGCCACGCT+AGG | - | chr3.1:71738972-71738991 | MS.gene052891:CDS | 50.0% | |
| TCTCGGAGTACACTGTGCAA+CGG | + | chr3.1:71737827-71737846 | None:intergenic | 50.0% | |
| ! | TGCAAGATGCAGCTTTGGCA+GGG | - | chr3.1:71738841-71738860 | MS.gene052891:CDS | 50.0% |
| ! | TTGCAAGATGCAGCTTTGGC+AGG | - | chr3.1:71738840-71738859 | MS.gene052891:CDS | 50.0% |
| !! | AGAAAGTATCACCGGACGGA+AGG | + | chr3.1:71738067-71738086 | None:intergenic | 50.0% |
| !! | AGAACAAGATCGGTGGTGGA+AGG | + | chr3.1:71738044-71738063 | None:intergenic | 50.0% |
| !! | CAATCTTGATGGTGCCACTC+CGG | + | chr3.1:71738602-71738621 | None:intergenic | 50.0% |
| !! | GGAGAGAAAGTATCACCGGA+CGG | + | chr3.1:71738071-71738090 | None:intergenic | 50.0% |
| AGGAGAAGCGAGAGTGAGGA+AGG | + | chr3.1:71738012-71738031 | None:intergenic | 55.0% | |
| CAAGAGGAGAAGCGAGAGTG+AGG | + | chr3.1:71738016-71738035 | None:intergenic | 55.0% | |
| CGAAGCCAACGAAACCGAAG+AGG | - | chr3.1:71737947-71737966 | MS.gene052891:CDS | 55.0% | |
| CGGAAGGAGAACAAGATCGG+TGG | + | chr3.1:71738051-71738070 | None:intergenic | 55.0% | |
| GATATGGAGGAAAGCCGGAG+TGG | - | chr3.1:71738585-71738604 | MS.gene052891:intron | 55.0% | |
| GTCGTCGTCGTAATCGCTCT+CGG | + | chr3.1:71737844-71737863 | None:intergenic | 55.0% | |
| TCCTTCCATTCCGGCTCACA+AGG | - | chr3.1:71738088-71738107 | MS.gene052891:CDS | 55.0% | |
| ! | TGCAGCTTTGGCAGGGATCA+TGG | - | chr3.1:71738848-71738867 | MS.gene052891:CDS | 55.0% |
| !! | AGGGAGGGTACTGACGAGAA+CGG | + | chr3.1:71738114-71738133 | None:intergenic | 55.0% |
| !! | GTGGTGGAAGGAGCATCAAG+AGG | + | chr3.1:71738032-71738051 | None:intergenic | 55.0% |
| !! | TTTGCAAGTACCGGCGTCGT+CGG | + | chr3.1:71737916-71737935 | None:intergenic | 55.0% |
| GCCTTGTGAGCCGGAATGGA+AGG | + | chr3.1:71738092-71738111 | None:intergenic | 60.0% | |
| ! | AACGGCCTTGTGAGCCGGAA+TGG | + | chr3.1:71738096-71738115 | None:intergenic | 60.0% |
| ! | ACGAGAACGGCCTTGTGAGC+CGG | + | chr3.1:71738101-71738120 | None:intergenic | 60.0% |
| ! | TACACTGTGCAACGGTGCCG+TGG | + | chr3.1:71737819-71737838 | None:intergenic | 60.0% |
| !! | TTGCAAGTACCGGCGTCGTC+GGG | + | chr3.1:71737915-71737934 | None:intergenic | 60.0% |
| GATTACGACCCCGACGACGC+CGG | - | chr3.1:71737903-71737922 | MS.gene052891:CDS | 65.0% | |
| !! | TGCAAGTACCGGCGTCGTCG+GGG | + | chr3.1:71737914-71737933 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 71737813 | 71739001 | 71737813 | ID=MS.gene052891 |
| chr3.1 | mRNA | 71737813 | 71739001 | 71737813 | ID=MS.gene052891.t1;Parent=MS.gene052891 |
| chr3.1 | exon | 71738696 | 71739001 | 71738696 | ID=MS.gene052891.t1.exon1;Parent=MS.gene052891.t1 |
| chr3.1 | CDS | 71738696 | 71739001 | 71738696 | ID=cds.MS.gene052891.t1;Parent=MS.gene052891.t1 |
| chr3.1 | exon | 71737813 | 71738268 | 71737813 | ID=MS.gene052891.t1.exon2;Parent=MS.gene052891.t1 |
| chr3.1 | CDS | 71737813 | 71738268 | 71737813 | ID=cds.MS.gene052891.t1;Parent=MS.gene052891.t1 |
| Gene Sequence |
| Protein sequence |
