Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72831.t1 | XP_003612598.1 | 93.6 | 266 | 17 | 0 | 1 | 266 | 1 | 266 | 5.40E-42 | 181.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72831.t1 | G7K6T6 | 93.6 | 266 | 17 | 0 | 1 | 266 | 1 | 266 | 3.9e-42 | 181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02595 | MS.gene72831 | PPI |
| MS.gene026617 | MS.gene72831 | PPI |
| MS.gene72831 | MS.gene02544 | PPI |
| MS.gene72831 | MS.gene065931 | PPI |
| MS.gene81045 | MS.gene72831 | PPI |
| MS.gene48062 | MS.gene72831 | PPI |
| MS.gene64609 | MS.gene72831 | PPI |
| MS.gene72831 | MS.gene040721 | PPI |
| MS.gene061923 | MS.gene72831 | PPI |
| MS.gene018529 | MS.gene72831 | PPI |
| MS.gene72831 | MS.gene073697 | PPI |
| MS.gene051019 | MS.gene72831 | PPI |
| MS.gene25036 | MS.gene72831 | PPI |
| MS.gene041675 | MS.gene72831 | PPI |
| MS.gene63845 | MS.gene72831 | PPI |
| MS.gene33587 | MS.gene72831 | PPI |
| MS.gene052891 | MS.gene72831 | PPI |
| MS.gene062793 | MS.gene72831 | PPI |
| MS.gene89677 | MS.gene72831 | PPI |
| MS.gene72831 | MS.gene62999 | PPI |
| MS.gene72831 | MS.gene44226 | PPI |
| MS.gene27398 | MS.gene72831 | PPI |
| MS.gene069687 | MS.gene72831 | PPI |
| MS.gene08461 | MS.gene72831 | PPI |
| MS.gene017616 | MS.gene72831 | PPI |
| MS.gene65953 | MS.gene72831 | PPI |
| MS.gene72831 | MS.gene012131 | PPI |
| MS.gene84087 | MS.gene72831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72831.t1 | MTR_5g026800 | 97.368 | 266 | 7 | 0 | 1 | 266 | 1 | 266 | 0.0 | 521 |
| MS.gene72831.t1 | MTR_6g027840 | 37.600 | 125 | 77 | 1 | 12 | 136 | 365 | 488 | 7.88e-17 | 80.1 |
| MS.gene72831.t1 | MTR_5g043640 | 35.099 | 151 | 93 | 2 | 15 | 160 | 58 | 208 | 1.03e-16 | 77.8 |
| MS.gene72831.t1 | MTR_5g043640 | 31.507 | 146 | 99 | 1 | 15 | 160 | 94 | 238 | 2.45e-12 | 65.5 |
| MS.gene72831.t1 | MTR_6g088470 | 32.164 | 171 | 100 | 5 | 3 | 160 | 8 | 175 | 3.18e-15 | 75.5 |
| MS.gene72831.t1 | MTR_3g088410 | 34.127 | 126 | 82 | 1 | 15 | 140 | 24 | 148 | 3.92e-15 | 71.2 |
| MS.gene72831.t1 | MTR_5g022050 | 32.847 | 137 | 91 | 1 | 15 | 151 | 263 | 398 | 1.14e-14 | 73.6 |
| MS.gene72831.t1 | MTR_5g023090 | 29.927 | 137 | 95 | 1 | 15 | 151 | 297 | 432 | 4.40e-13 | 68.9 |
| MS.gene72831.t1 | MTR_7g117620 | 35.366 | 164 | 97 | 5 | 15 | 169 | 120 | 283 | 1.80e-12 | 67.4 |
| MS.gene72831.t1 | MTR_4g062100 | 32.432 | 185 | 116 | 6 | 8 | 185 | 101 | 283 | 2.20e-12 | 67.0 |
| MS.gene72831.t1 | MTR_1g100797 | 34.677 | 124 | 79 | 2 | 9 | 130 | 8 | 131 | 3.01e-12 | 66.6 |
| MS.gene72831.t1 | MTR_8g056020 | 31.967 | 122 | 82 | 1 | 18 | 139 | 236 | 356 | 6.39e-12 | 65.1 |
| MS.gene72831.t1 | MTR_6g088470 | 32.258 | 124 | 76 | 3 | 3 | 121 | 8 | 128 | 2.09e-11 | 63.9 |
| MS.gene72831.t1 | MTR_4g021880 | 30.539 | 167 | 94 | 6 | 15 | 160 | 136 | 301 | 2.59e-11 | 63.9 |
| MS.gene72831.t1 | MTR_2g096190 | 33.557 | 149 | 95 | 4 | 8 | 152 | 97 | 245 | 4.55e-11 | 63.2 |
| MS.gene72831.t1 | MTR_2g096190 | 29.956 | 227 | 133 | 10 | 3 | 205 | 17 | 241 | 9.79e-11 | 62.0 |
| MS.gene72831.t1 | MTR_4g021880 | 30.539 | 167 | 94 | 6 | 15 | 160 | 136 | 301 | 5.03e-11 | 62.8 |
| MS.gene72831.t1 | MTR_2g048680 | 28.477 | 151 | 105 | 2 | 4 | 152 | 139 | 288 | 5.92e-11 | 62.0 |
| MS.gene72831.t1 | MTR_7g100430 | 32.886 | 149 | 96 | 4 | 8 | 152 | 154 | 302 | 6.59e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72831.t1 | AT4G19150 | 56.693 | 254 | 78 | 3 | 14 | 264 | 19 | 243 | 4.55e-84 | 251 |
| MS.gene72831.t1 | AT4G19150 | 52.055 | 219 | 73 | 3 | 49 | 264 | 31 | 220 | 1.04e-59 | 189 |
| MS.gene72831.t1 | AT5G12320 | 33.858 | 127 | 83 | 1 | 14 | 140 | 14 | 139 | 5.18e-17 | 76.3 |
| MS.gene72831.t1 | AT2G03430 | 35.333 | 150 | 93 | 2 | 15 | 160 | 51 | 200 | 5.97e-17 | 78.2 |
| MS.gene72831.t1 | AT2G03430 | 31.613 | 155 | 98 | 2 | 15 | 162 | 87 | 240 | 8.00e-12 | 63.9 |
| MS.gene72831.t1 | AT5G40160 | 36.220 | 127 | 81 | 0 | 25 | 151 | 165 | 291 | 1.90e-16 | 78.2 |
| MS.gene72831.t1 | AT5G66055 | 34.228 | 149 | 91 | 4 | 15 | 159 | 264 | 409 | 2.92e-16 | 78.2 |
| MS.gene72831.t1 | AT3G24530 | 35.417 | 144 | 84 | 3 | 15 | 149 | 19 | 162 | 1.92e-15 | 75.9 |
| MS.gene72831.t1 | AT2G31820 | 35.211 | 142 | 89 | 3 | 15 | 153 | 228 | 369 | 2.27e-13 | 70.1 |
| MS.gene72831.t1 | AT5G40160 | 34.513 | 113 | 74 | 0 | 31 | 143 | 171 | 283 | 3.22e-13 | 68.6 |
| MS.gene72831.t1 | AT1G05640 | 37.255 | 153 | 86 | 5 | 8 | 153 | 184 | 333 | 6.08e-13 | 68.9 |
| MS.gene72831.t1 | AT5G53470 | 33.094 | 139 | 55 | 3 | 15 | 151 | 222 | 324 | 2.81e-12 | 66.2 |
| MS.gene72831.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 4.84e-12 | 65.9 |
| MS.gene72831.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 4.84e-12 | 65.9 |
| MS.gene72831.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 4.84e-12 | 65.9 |
| MS.gene72831.t1 | AT5G60070 | 35.065 | 154 | 87 | 5 | 8 | 152 | 104 | 253 | 5.96e-12 | 65.9 |
| MS.gene72831.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 7.10e-12 | 65.5 |
| MS.gene72831.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 7.10e-12 | 65.5 |
| MS.gene72831.t1 | AT2G28840 | 33.333 | 174 | 80 | 8 | 15 | 160 | 50 | 215 | 9.78e-12 | 65.1 |
| MS.gene72831.t1 | AT2G26650 | 31.081 | 148 | 99 | 2 | 4 | 151 | 544 | 688 | 2.31e-11 | 64.3 |
| MS.gene72831.t1 | AT3G09890 | 32.692 | 156 | 97 | 2 | 14 | 161 | 42 | 197 | 2.47e-11 | 62.0 |
| MS.gene72831.t1 | AT1G07710 | 32.432 | 148 | 96 | 4 | 8 | 151 | 97 | 244 | 4.38e-11 | 63.2 |
| MS.gene72831.t1 | AT1G07710 | 32.432 | 148 | 96 | 4 | 8 | 151 | 97 | 244 | 4.38e-11 | 63.2 |
| MS.gene72831.t1 | AT5G07270 | 34.677 | 124 | 79 | 2 | 9 | 130 | 8 | 131 | 5.28e-11 | 62.8 |
Find 73 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTCTTCAGGTGCTTT+TGG | 0.220900 | 5.1:-17466756 | None:intergenic |
| AGTGAGACTTGCCCCTTTCT+TGG | 0.250302 | 5.1:-17466577 | None:intergenic |
| AAACCCTTCACAACCGAAAA+AGG | 0.281208 | 5.1:+17466902 | MS.gene72831:CDS |
| CCTACAGGGTCTCTTCTTCT+TGG | 0.284378 | 5.1:-17466965 | None:intergenic |
| GTCCCTGATTTCTGTGGATT+TGG | 0.294656 | 5.1:-17464658 | None:intergenic |
| GCCTTTGGATCAGATTCTTC+AGG | 0.317269 | 5.1:-17466765 | None:intergenic |
| TGCTTCTGCTATGGATGATA+TGG | 0.344938 | 5.1:+17466401 | MS.gene72831:CDS |
| CTTGGACATCATCTGAACTT+TGG | 0.372832 | 5.1:-17466947 | None:intergenic |
| TAATTGAGGATACGGTGTTC+TGG | 0.393428 | 5.1:-17464782 | None:intergenic |
| AAACCAAATCCACAGAAATC+AGG | 0.401690 | 5.1:+17464655 | MS.gene72831:CDS |
| TGCTGTTCAAGGTTCCCATC+TGG | 0.407073 | 5.1:+17466536 | MS.gene72831:CDS |
| TTTAGAAGTTGTTCGAGCTC+TGG | 0.422022 | 5.1:+17466455 | MS.gene72831:CDS |
| CGCCGCGTGAAGGTCGCCGC+CGG | 0.425863 | 5.1:-17464680 | None:intergenic |
| CTTCACGCGGCGGCGAGGTC+CGG | 0.428785 | 5.1:+17464691 | MS.gene72831:CDS |
| CCTAAAGAGGATGATGCCTT+TGG | 0.430235 | 5.1:-17466780 | None:intergenic |
| GTCAAGTACTTGTCCAAGAA+AGG | 0.437785 | 5.1:+17466564 | MS.gene72831:CDS |
| GTTCGAGCTCTGGTTTCAGC+TGG | 0.438220 | 5.1:+17466465 | MS.gene72831:CDS |
| CCAAAGGCATCATCCTCTTT+AGG | 0.445769 | 5.1:+17466780 | MS.gene72831:CDS |
| TTCACTACTCAAATTACCTT+CGG | 0.461363 | 5.1:-17466805 | None:intergenic |
| TGTTCTGGAGTGCTTATCTC+TGG | 0.471688 | 5.1:-17464767 | None:intergenic |
| CTCACTATCAAGACAAAGGC+AGG | 0.472180 | 5.1:+17466594 | MS.gene72831:CDS |
| CCGAGTAGAGGCTTTGAAAG+AGG | 0.482699 | 5.1:-17466490 | None:intergenic |
| TGGTGAGAAAGAGAAGAGGA+AGG | 0.484213 | 5.1:+17466857 | MS.gene72831:CDS |
| TCAAGTACTTGTCCAAGAAA+GGG | 0.485148 | 5.1:+17466565 | MS.gene72831:CDS |
| CATTGGTAGCAAGATCCAAT+GGG | 0.488232 | 5.1:-17466623 | None:intergenic |
| TCTTCATCAACGGTAGCTGC+AGG | 0.489025 | 5.1:-17466831 | None:intergenic |
| TTTGAAAAGTCAGCTAAGAA+TGG | 0.495928 | 5.1:+17466672 | MS.gene72831:CDS |
| GTGCTTATCTCTGGAATTGA+CGG | 0.516931 | 5.1:-17464758 | None:intergenic |
| GGGTAATGAAGATGATGAAA+GGG | 0.517277 | 5.1:+17466878 | MS.gene72831:CDS |
| CCTTGAACAGCAAAATGTAA+TGG | 0.521701 | 5.1:-17466525 | None:intergenic |
| AAAGGCGCGGACTTCATCAT+TGG | 0.527813 | 5.1:-17466640 | None:intergenic |
| CGGACCTCGCCGCCGCGTGA+AGG | 0.534652 | 5.1:-17464690 | None:intergenic |
| ATTACCTTCGGAGCCTAAAG+AGG | 0.537106 | 5.1:-17466793 | None:intergenic |
| CTCACCACTTTCTTCATCAA+CGG | 0.541261 | 5.1:-17466841 | None:intergenic |
| AGGGTAATGAAGATGATGAA+AGG | 0.548445 | 5.1:+17466877 | MS.gene72831:CDS |
| CATCATCTGAACTTTGGAGA+TGG | 0.551884 | 5.1:-17466941 | None:intergenic |
| TGATGTCGGTGCTTCTGCTA+TGG | 0.553962 | 5.1:+17466392 | MS.gene72831:CDS |
| TCATTGGTAGCAAGATCCAA+TGG | 0.558682 | 5.1:-17466624 | None:intergenic |
| ACCTGAAGAATCTGATCCAA+AGG | 0.559801 | 5.1:+17466764 | MS.gene72831:CDS |
| CATCAGCTTTATTCTTGCAG+AGG | 0.562565 | 5.1:-17466374 | None:intergenic |
| GCGACCTTCACGCGGCGGCG+AGG | 0.566897 | 5.1:+17464686 | MS.gene72831:CDS |
| CCGCCGGTCCCTGATTTCTG+TGG | 0.567523 | 5.1:-17464664 | None:intergenic |
| AACCAAATCCACAGAAATCA+GGG | 0.569694 | 5.1:+17464656 | MS.gene72831:CDS |
| TTCAAAGCCTCTACTCGGAA+AGG | 0.572390 | 5.1:+17466495 | MS.gene72831:CDS |
| CCTCTTTCAAAGCCTCTACT+CGG | 0.573614 | 5.1:+17466490 | MS.gene72831:CDS |
| AAAGTGGTGAGAAAGAGAAG+AGG | 0.577048 | 5.1:+17466853 | MS.gene72831:CDS |
| GGTGAGAAAGAGAAGAGGAA+GGG | 0.577937 | 5.1:+17466858 | MS.gene72831:CDS |
| TCATCCTCTTTAGGCTCCGA+AGG | 0.581554 | 5.1:+17466789 | MS.gene72831:CDS |
| CTGTGCCGCGAAGTGTATTG+CGG | 0.594539 | 5.1:-17466424 | None:intergenic |
| GAAGTCCGCGCCTTTCTAGA+GGG | 0.595781 | 5.1:+17466648 | MS.gene72831:CDS |
| TATGGCCGCAATACACTTCG+CGG | 0.596559 | 5.1:+17466419 | MS.gene72831:CDS |
| TCTCTGGAATTGACGGCCAG+AGG | 0.598799 | 5.1:-17464751 | None:intergenic |
| ATACACTTCGCGGCACAGAA+AGG | 0.600317 | 5.1:+17466429 | MS.gene72831:CDS |
| CGGCGGCGACCTTCACGCGG+CGG | 0.608299 | 5.1:+17464681 | MS.gene72831:CDS |
| CAAGTACTTGTCCAAGAAAG+GGG | 0.609645 | 5.1:+17466566 | MS.gene72831:CDS |
| CTGAACTGTAATCAGATCAC+CGG | 0.610660 | 5.1:-17464710 | None:intergenic |
| GACCGGCGGCGACCTTCACG+CGG | 0.611827 | 5.1:+17464678 | MS.gene72831:CDS |
| AAAGGCAGGAAAGACCCCAT+TGG | 0.612270 | 5.1:+17466608 | MS.gene72831:CDS |
| AAGAACGAAGATAAAACTGA+AGG | 0.613960 | 5.1:+17466702 | MS.gene72831:CDS |
| AGTACTTGACAAGTTCCAGA+TGG | 0.615284 | 5.1:-17466551 | None:intergenic |
| AATCCACAGAAATCAGGGAC+CGG | 0.618128 | 5.1:+17464661 | MS.gene72831:CDS |
| AGTCACGCCTTTCCGAGTAG+AGG | 0.620704 | 5.1:-17466502 | None:intergenic |
| TGAAGTCCGCGCCTTTCTAG+AGG | 0.620823 | 5.1:+17466647 | MS.gene72831:CDS |
| TCATCAACGGTAGCTGCAGG+AGG | 0.622299 | 5.1:-17466828 | None:intergenic |
| CAAATCCCTCTAGAAAGGCG+CGG | 0.629038 | 5.1:-17466653 | None:intergenic |
| TGCAAGAATAAAGCTGATGT+CGG | 0.636789 | 5.1:+17466378 | MS.gene72831:CDS |
| GCTACCGTTGATGAAGAAAG+TGG | 0.655950 | 5.1:+17466837 | MS.gene72831:CDS |
| GTACTTGACAAGTTCCAGAT+GGG | 0.659925 | 5.1:-17466550 | None:intergenic |
| AAGTCTCACTATCAAGACAA+AGG | 0.667954 | 5.1:+17466590 | MS.gene72831:CDS |
| CCACAGAAATCAGGGACCGG+CGG | 0.674685 | 5.1:+17464664 | MS.gene72831:CDS |
| CCAAGAAGAAGAGACCCTGT+AGG | 0.691926 | 5.1:+17466965 | MS.gene72831:CDS |
| TATGCCTCTACCAACCTACA+GGG | 0.721432 | 5.1:-17466979 | None:intergenic |
| ATTGGTAGCAAGATCCAATG+GGG | 0.757229 | 5.1:-17466622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTATATATTTCTTTCTA+AGG | + | chr5.1:17465536-17465555 | MS.gene72831:intron | 15.0% |
| !! | ATAATATACAGTAACAAAAT+TGG | - | chr5.1:17465752-17465771 | None:intergenic | 15.0% |
| !! | CTCTTAAAAAAAAAAATAAG+CGG | + | chr5.1:17465094-17465113 | MS.gene72831:intron | 15.0% |
| !! | TAATATACAGTAACAAAATT+GGG | - | chr5.1:17465751-17465770 | None:intergenic | 15.0% |
| !!! | ACATTACTTTTAAAATATCT+GGG | - | chr5.1:17465521-17465540 | None:intergenic | 15.0% |
| !!! | GCTTATTTTTTTTTTTAAGA+GGG | - | chr5.1:17465095-17465114 | None:intergenic | 15.0% |
| !!! | TACATTACTTTTAAAATATC+TGG | - | chr5.1:17465522-17465541 | None:intergenic | 15.0% |
| !! | AATATACAGTAACAAAATTG+GGG | - | chr5.1:17465750-17465769 | None:intergenic | 20.0% |
| !! | ATTATTGTAAAAACATCTAC+AGG | + | chr5.1:17465676-17465695 | MS.gene72831:intron | 20.0% |
| !! | GTTTCTTTAACATACATATT+TGG | + | chr5.1:17466162-17466181 | MS.gene72831:intron | 20.0% |
| !! | TCAAATAAATCAATCCAAAT+AGG | + | chr5.1:17465391-17465410 | MS.gene72831:intron | 20.0% |
| !! | TGAAAACTTATGAAAATAAG+CGG | + | chr5.1:17465060-17465079 | MS.gene72831:intron | 20.0% |
| !! | TTAAGGAAGATAATTTAGTT+TGG | + | chr5.1:17466088-17466107 | MS.gene72831:intron | 20.0% |
| !!! | ACAAGAAAATTTTAATTCTC+AGG | - | chr5.1:17465835-17465854 | None:intergenic | 20.0% |
| !!! | ATTACTTTTAAAATATCTGG+GGG | - | chr5.1:17465519-17465538 | None:intergenic | 20.0% |
| !!! | ATTTTACATGATTGTATTCT+GGG | + | chr5.1:17466054-17466073 | MS.gene72831:intron | 20.0% |
| !!! | CATTACTTTTAAAATATCTG+GGG | - | chr5.1:17465520-17465539 | None:intergenic | 20.0% |
| !!! | CGCTTATTTTTTTTTTTAAG+AGG | - | chr5.1:17465096-17465115 | None:intergenic | 20.0% |
| !!! | TAAGTTGTTTCTATAGTAAA+AGG | + | chr5.1:17464979-17464998 | MS.gene72831:intron | 20.0% |
| ! | AAAATGAAAATCACACATGA+AGG | + | chr5.1:17465605-17465624 | MS.gene72831:intron | 25.0% |
| ! | AAATGAAAATCACACATGAA+GGG | + | chr5.1:17465606-17465625 | MS.gene72831:intron | 25.0% |
| ! | AATATGCATGTTTCTTTCTA+AGG | - | chr5.1:17465659-17465678 | None:intergenic | 25.0% |
| ! | ATAAGGAAGAATACTTTATC+TGG | + | chr5.1:17466231-17466250 | MS.gene72831:intron | 25.0% |
| ! | ATATACAGTAACAAAATTGG+GGG | - | chr5.1:17465749-17465768 | None:intergenic | 25.0% |
| ! | ATCATGTAAAATGTAGTCTA+TGG | - | chr5.1:17466046-17466065 | None:intergenic | 25.0% |
| ! | CATTAATGATAACCATGTAA+TGG | - | chr5.1:17465419-17465438 | None:intergenic | 25.0% |
| ! | CATTACATGGTTATCATTAA+TGG | + | chr5.1:17465417-17465436 | MS.gene72831:intron | 25.0% |
| ! | TAAGGAAGAATACTTTATCT+GGG | + | chr5.1:17466232-17466251 | MS.gene72831:intron | 25.0% |
| ! | TAGTTATGAGTTATGACATA+GGG | + | chr5.1:17465482-17465501 | MS.gene72831:intron | 25.0% |
| ! | TGTAGTCTATTGTTCAAATT+TGG | - | chr5.1:17466315-17466334 | None:intergenic | 25.0% |
| ! | TTAGTTATGAGTTATGACAT+AGG | + | chr5.1:17465481-17465500 | MS.gene72831:intron | 25.0% |
| !! | ATTTTAGATGACTGTATTCT+GGG | + | chr5.1:17466197-17466216 | MS.gene72831:intron | 25.0% |
| !! | CATTTTACATGATTGTATTC+TGG | + | chr5.1:17466053-17466072 | MS.gene72831:intron | 25.0% |
| !! | GAAGTTACTAGATTTTTCTT+TGG | + | chr5.1:17465976-17465995 | MS.gene72831:intron | 25.0% |
| !! | GTCATCTAAAATATAGTCTA+TGG | - | chr5.1:17466189-17466208 | None:intergenic | 25.0% |
| !! | TTTTACATGATTGTATTCTG+GGG | + | chr5.1:17466055-17466074 | MS.gene72831:intron | 25.0% |
| !!! | AATTTTGATTTCAAATCCTC+TGG | + | chr5.1:17464735-17464754 | MS.gene72831:CDS | 25.0% |
| !!! | TATTTTAGATGACTGTATTC+TGG | + | chr5.1:17466196-17466215 | MS.gene72831:intron | 25.0% |
| AAGAACGAAGATAAAACTGA+AGG | + | chr5.1:17466702-17466721 | MS.gene72831:CDS | 30.0% | |
| AGAGGTTTAAACCAAAAGTT+TGG | + | chr5.1:17465441-17465460 | MS.gene72831:intron | 30.0% | |
| AGTTATGAGTTATGACATAG+GGG | + | chr5.1:17465483-17465502 | MS.gene72831:intron | 30.0% | |
| ATAAGGAGGAAAACTTTATC+TGG | + | chr5.1:17465950-17465969 | MS.gene72831:intron | 30.0% | |
| GAGGTTTAAACCAAAAGTTT+GGG | + | chr5.1:17465442-17465461 | MS.gene72831:intron | 30.0% | |
| TAAGGAGGAAAACTTTATCT+GGG | + | chr5.1:17465951-17465970 | MS.gene72831:intron | 30.0% | |
| TGGATGTTAAAGAAACAACA+AGG | - | chr5.1:17466295-17466314 | None:intergenic | 30.0% | |
| TGGTAAAGTTAGTAGTAACT+GGG | + | chr5.1:17466108-17466127 | MS.gene72831:intron | 30.0% | |
| TTCACTACTCAAATTACCTT+CGG | - | chr5.1:17466808-17466827 | None:intergenic | 30.0% | |
| TTGGTAAAGTTAGTAGTAAC+TGG | + | chr5.1:17466107-17466126 | MS.gene72831:intron | 30.0% | |
| TTTGAAAAGTCAGCTAAGAA+TGG | + | chr5.1:17466672-17466691 | MS.gene72831:CDS | 30.0% | |
| ! | ATGCTATTTATCTGCTTGTT+AGG | + | chr5.1:17465794-17465813 | MS.gene72831:intron | 30.0% |
| ! | TACATTTAGCTGCATTTTCT+GGG | + | chr5.1:17466331-17466350 | MS.gene72831:CDS | 30.0% |
| ! | TGCTATTTATCTGCTTGTTA+GGG | + | chr5.1:17465795-17465814 | MS.gene72831:intron | 30.0% |
| ! | TTCTTCGTTTTCTTTTGGAT+CGG | - | chr5.1:17466730-17466749 | None:intergenic | 30.0% |
| !! | TGTGTTCTAGAGAGAAAATA+AGG | + | chr5.1:17465933-17465952 | MS.gene72831:intron | 30.0% |
| AAACCAAATCCACAGAAATC+AGG | + | chr5.1:17464655-17464674 | MS.gene72831:CDS | 35.0% | |
| AAATCACACATGAAGGGATA+TGG | + | chr5.1:17465612-17465631 | MS.gene72831:intron | 35.0% | |
| AAATGTAGTCTATGGTCCAA+AGG | - | chr5.1:17466038-17466057 | None:intergenic | 35.0% | |
| AAATTAATCGACCCTTAGAC+TGG | + | chr5.1:17465285-17465304 | MS.gene72831:intron | 35.0% | |
| AACCAAATCCACAGAAATCA+GGG | + | chr5.1:17464656-17464675 | MS.gene72831:CDS | 35.0% | |
| AAGGAGGAAAACTTTATCTG+GGG | + | chr5.1:17465952-17465971 | MS.gene72831:intron | 35.0% | |
| AAGTCTCACTATCAAGACAA+AGG | + | chr5.1:17466590-17466609 | MS.gene72831:CDS | 35.0% | |
| AATTAATCGACCCTTAGACT+GGG | + | chr5.1:17465286-17465305 | MS.gene72831:intron | 35.0% | |
| AGGGTAATGAAGATGATGAA+AGG | + | chr5.1:17466877-17466896 | MS.gene72831:CDS | 35.0% | |
| ATGGTTATCATTAATGGCAG+AGG | + | chr5.1:17465423-17465442 | MS.gene72831:intron | 35.0% | |
| CAGTCTCACAAAACTTATGT+CGG | + | chr5.1:17465359-17465378 | MS.gene72831:intron | 35.0% | |
| CCTTGAACAGCAAAATGTAA+TGG | - | chr5.1:17466528-17466547 | None:intergenic | 35.0% | |
| GACTGTATTCTGGGTATATT+GGG | + | chr5.1:17466206-17466225 | MS.gene72831:intron | 35.0% | |
| GATGACACGAAAAAGAGTTA+GGG | - | chr5.1:17464817-17464836 | None:intergenic | 35.0% | |
| GCACATCTTAGTTATGACAT+AGG | - | chr5.1:17465714-17465733 | None:intergenic | 35.0% | |
| GGGTAATGAAGATGATGAAA+GGG | + | chr5.1:17466878-17466897 | MS.gene72831:CDS | 35.0% | |
| GTTTCTTCAACAATCACCTT+TGG | + | chr5.1:17466019-17466038 | MS.gene72831:intron | 35.0% | |
| TAGCTCATCAAAATTGGCAT+CGG | - | chr5.1:17465197-17465216 | None:intergenic | 35.0% | |
| TCAAGTACTTGTCCAAGAAA+GGG | + | chr5.1:17466565-17466584 | MS.gene72831:CDS | 35.0% | |
| TCATAACTAAGATGTGCCAT+TGG | + | chr5.1:17465717-17465736 | MS.gene72831:intron | 35.0% | |
| TCTGGGGAAAATTGGAATTA+AGG | + | chr5.1:17466071-17466090 | MS.gene72831:intron | 35.0% | |
| TCTGGGTATATTGGGAAATA+AGG | + | chr5.1:17466214-17466233 | MS.gene72831:intron | 35.0% | |
| TGACTGTATTCTGGGTATAT+TGG | + | chr5.1:17466205-17466224 | MS.gene72831:intron | 35.0% | |
| TGATGACACGAAAAAGAGTT+AGG | - | chr5.1:17464818-17464837 | None:intergenic | 35.0% | |
| TGCAAGAATAAAGCTGATGT+CGG | + | chr5.1:17466378-17466397 | MS.gene72831:CDS | 35.0% | |
| TTAAACCAAAAGTTTGGGCA+TGG | + | chr5.1:17465447-17465466 | MS.gene72831:intron | 35.0% | |
| ! | CGAAGTAACTGAGTTTTTCT+TGG | + | chr5.1:17466255-17466274 | MS.gene72831:intron | 35.0% |
| ! | CTAAGGGTCGATTAATTTGA+GGG | - | chr5.1:17465283-17465302 | None:intergenic | 35.0% |
| ! | CTACATTTAGCTGCATTTTC+TGG | + | chr5.1:17466330-17466349 | MS.gene72831:CDS | 35.0% |
| ! | GATTGTATTCTGGGGAAAAT+TGG | + | chr5.1:17466063-17466082 | MS.gene72831:intron | 35.0% |
| ! | TAAGGGTCGATTAATTTGAG+GGG | - | chr5.1:17465282-17465301 | None:intergenic | 35.0% |
| ! | TCGGATTCTTCGTTTTCTTT+TGG | - | chr5.1:17466735-17466754 | None:intergenic | 35.0% |
| ! | TCTAAGGGTCGATTAATTTG+AGG | - | chr5.1:17465284-17465303 | None:intergenic | 35.0% |
| ! | TTTTTGCTCCATGTTTAAGG+TGG | - | chr5.1:17465580-17465599 | None:intergenic | 35.0% |
| !! | ATGGACTAGCTCATCAAAAT+TGG | - | chr5.1:17465203-17465222 | None:intergenic | 35.0% |
| !! | CTTTTCAAATCCCTCTAGAA+AGG | - | chr5.1:17466661-17466680 | None:intergenic | 35.0% |
| !! | GTTCTAGAGAGAAAATAAGG+AGG | + | chr5.1:17465936-17465955 | MS.gene72831:intron | 35.0% |
| !! | TGCGTTGATAATTGAGGATA+CGG | - | chr5.1:17464793-17464812 | None:intergenic | 35.0% |
| !! | TGCTTTTTGCTCCATGTTTA+AGG | - | chr5.1:17465583-17465602 | None:intergenic | 35.0% |
| !! | TTTTTGAAAGCCCAGTCTAA+GGG | - | chr5.1:17465299-17465318 | None:intergenic | 35.0% |
| !!! | CCATTACATTTTGCTGTTCA+AGG | + | chr5.1:17466525-17466544 | MS.gene72831:CDS | 35.0% |
| !!! | TTTTTTGAAAGCCCAGTCTA+AGG | - | chr5.1:17465300-17465319 | None:intergenic | 35.0% |
| AAACCCTTCACAACCGAAAA+AGG | + | chr5.1:17466902-17466921 | MS.gene72831:CDS | 40.0% | |
| AAAGTGGTGAGAAAGAGAAG+AGG | + | chr5.1:17466853-17466872 | MS.gene72831:CDS | 40.0% | |
| AAATTGGGGGTGATAACCAA+TGG | - | chr5.1:17465736-17465755 | None:intergenic | 40.0% | |
| ACCATGTAATGGTGCCTATT+TGG | - | chr5.1:17465408-17465427 | None:intergenic | 40.0% | |
| ACCTGAAGAATCTGATCCAA+AGG | + | chr5.1:17466764-17466783 | MS.gene72831:CDS | 40.0% | |
| AGTACTTGACAAGTTCCAGA+TGG | - | chr5.1:17466554-17466573 | None:intergenic | 40.0% | |
| AGTAGTAACTGGGTTTGACT+TGG | + | chr5.1:17466118-17466137 | MS.gene72831:intron | 40.0% | |
| AGTTATGACATAGGAGAGCT+AGG | - | chr5.1:17465705-17465724 | None:intergenic | 40.0% | |
| AGTTATGACATAGGGGAGTT+TGG | + | chr5.1:17465490-17465509 | MS.gene72831:intron | 40.0% | |
| CAAGTACTTGTCCAAGAAAG+GGG | + | chr5.1:17466566-17466585 | MS.gene72831:CDS | 40.0% | |
| CTCACCACTTTCTTCATCAA+CGG | - | chr5.1:17466844-17466863 | None:intergenic | 40.0% | |
| CTGAACTGTAATCAGATCAC+CGG | - | chr5.1:17464713-17464732 | None:intergenic | 40.0% | |
| CTTGGACATCATCTGAACTT+TGG | - | chr5.1:17466950-17466969 | None:intergenic | 40.0% | |
| GTACTTGACAAGTTCCAGAT+GGG | - | chr5.1:17466553-17466572 | None:intergenic | 40.0% | |
| GTCAAGTACTTGTCCAAGAA+AGG | + | chr5.1:17466564-17466583 | MS.gene72831:CDS | 40.0% | |
| GTTATGACATAGGAGAGCTA+GGG | - | chr5.1:17465704-17465723 | None:intergenic | 40.0% | |
| GTTATGACATAGGGGAGTTT+GGG | + | chr5.1:17465491-17465510 | MS.gene72831:intron | 40.0% | |
| TAATTGAGGATACGGTGTTC+TGG | - | chr5.1:17464785-17464804 | None:intergenic | 40.0% | |
| TCCAAATAGGCACCATTACA+TGG | + | chr5.1:17465404-17465423 | MS.gene72831:intron | 40.0% | |
| TGCTTCTGCTATGGATGATA+TGG | + | chr5.1:17466401-17466420 | MS.gene72831:CDS | 40.0% | |
| TGTCATAAGCTAACCCACTT+TGG | + | chr5.1:17465135-17465154 | MS.gene72831:intron | 40.0% | |
| TTTAGAAGTTGTTCGAGCTC+TGG | + | chr5.1:17466455-17466474 | MS.gene72831:CDS | 40.0% | |
| ! | ATTGGTAGCAAGATCCAATG+GGG | - | chr5.1:17466625-17466644 | None:intergenic | 40.0% |
| ! | CATCATCTGAACTTTGGAGA+TGG | - | chr5.1:17466944-17466963 | None:intergenic | 40.0% |
| ! | CATTGGTAGCAAGATCCAAT+GGG | - | chr5.1:17466626-17466645 | None:intergenic | 40.0% |
| ! | GTAGTAACTGGGTTTGACTT+GGG | + | chr5.1:17466119-17466138 | MS.gene72831:intron | 40.0% |
| ! | TCAGATTCTTCAGGTGCTTT+TGG | - | chr5.1:17466759-17466778 | None:intergenic | 40.0% |
| ! | TCATTGGTAGCAAGATCCAA+TGG | - | chr5.1:17466627-17466646 | None:intergenic | 40.0% |
| ! | TTCTTCAGGTGCTTTTGGAT+CGG | - | chr5.1:17466754-17466773 | None:intergenic | 40.0% |
| !! | CATCAGCTTTATTCTTGCAG+AGG | - | chr5.1:17466377-17466396 | None:intergenic | 40.0% |
| !! | GTGCTTATCTCTGGAATTGA+CGG | - | chr5.1:17464761-17464780 | None:intergenic | 40.0% |
| !! | TAGGGTTGCGTTGATAATTG+AGG | - | chr5.1:17464799-17464818 | None:intergenic | 40.0% |
| AACCAAAAGTTTGGGCATGG+AGG | + | chr5.1:17465450-17465469 | MS.gene72831:intron | 45.0% | |
| AATCCACAGAAATCAGGGAC+CGG | + | chr5.1:17464661-17464680 | MS.gene72831:CDS | 45.0% | |
| ATCGATCCTAAGACCTTGAG+AGG | - | chr5.1:17465169-17465188 | None:intergenic | 45.0% | |
| ATTACCTTCGGAGCCTAAAG+AGG | - | chr5.1:17466796-17466815 | None:intergenic | 45.0% | |
| CCTAAAGAGGATGATGCCTT+TGG | - | chr5.1:17466783-17466802 | None:intergenic | 45.0% | |
| CCTCTTTCAAAGCCTCTACT+CGG | + | chr5.1:17466490-17466509 | MS.gene72831:CDS | 45.0% | |
| CTCACTATCAAGACAAAGGC+AGG | + | chr5.1:17466594-17466613 | MS.gene72831:CDS | 45.0% | |
| CTTCTGCGTGTATGTGTCTA+TGG | + | chr5.1:17465881-17465900 | MS.gene72831:intron | 45.0% | |
| GCCTTTGGATCAGATTCTTC+AGG | - | chr5.1:17466768-17466787 | None:intergenic | 45.0% | |
| GGTGAGAAAGAGAAGAGGAA+GGG | + | chr5.1:17466858-17466877 | MS.gene72831:CDS | 45.0% | |
| GTCCCTGATTTCTGTGGATT+TGG | - | chr5.1:17464661-17464680 | None:intergenic | 45.0% | |
| TGGTGAGAAAGAGAAGAGGA+AGG | + | chr5.1:17466857-17466876 | MS.gene72831:CDS | 45.0% | |
| TTAAATGGGGCTCTTGCAAG+TGG | + | chr5.1:17465242-17465261 | MS.gene72831:intron | 45.0% | |
| TTCAAAGCCTCTACTCGGAA+AGG | + | chr5.1:17466495-17466514 | MS.gene72831:CDS | 45.0% | |
| ! | AGCTGAACTCTCGCCTTTTT+CGG | - | chr5.1:17466918-17466937 | None:intergenic | 45.0% |
| ! | ATCCTCCATGCCCAAACTTT+TGG | - | chr5.1:17465455-17465474 | None:intergenic | 45.0% |
| ! | GCTACCGTTGATGAAGAAAG+TGG | + | chr5.1:17466837-17466856 | MS.gene72831:CDS | 45.0% |
| ! | TGCTCCATGTTTAAGGTGGT+GGG | - | chr5.1:17465576-17465595 | None:intergenic | 45.0% |
| ! | TTGCTCCATGTTTAAGGTGG+TGG | - | chr5.1:17465577-17465596 | None:intergenic | 45.0% |
| !! | AGCCTTGCGCTAGCTTTAAA+TGG | + | chr5.1:17465227-17465246 | MS.gene72831:intron | 45.0% |
| !! | CCAAAGGCATCATCCTCTTT+AGG | + | chr5.1:17466780-17466799 | MS.gene72831:CDS | 45.0% |
| !! | CCTTGCGCTAGCTTTAAATG+GGG | + | chr5.1:17465229-17465248 | MS.gene72831:intron | 45.0% |
| !! | GCCTTGCGCTAGCTTTAAAT+GGG | + | chr5.1:17465228-17465247 | MS.gene72831:intron | 45.0% |
| !! | TGTTCTGGAGTGCTTATCTC+TGG | - | chr5.1:17464770-17464789 | None:intergenic | 45.0% |
| !!! | TCGCCTTTTTCGGTTGTGAA+GGG | - | chr5.1:17466908-17466927 | None:intergenic | 45.0% |
| AAAGGCAGGAAAGACCCCAT+TGG | + | chr5.1:17466608-17466627 | MS.gene72831:CDS | 50.0% | |
| AGTGAGACTTGCCCCTTTCT+TGG | - | chr5.1:17466580-17466599 | None:intergenic | 50.0% | |
| ATACACTTCGCGGCACAGAA+AGG | + | chr5.1:17466429-17466448 | MS.gene72831:CDS | 50.0% | |
| TATGGCCGCAATACACTTCG+CGG | + | chr5.1:17466419-17466438 | MS.gene72831:CDS | 50.0% | |
| TCATCCTCTTTAGGCTCCGA+AGG | + | chr5.1:17466789-17466808 | MS.gene72831:CDS | 50.0% | |
| TCTTCATCAACGGTAGCTGC+AGG | - | chr5.1:17466834-17466853 | None:intergenic | 50.0% | |
| TGCTGTTCAAGGTTCCCATC+TGG | + | chr5.1:17466536-17466555 | MS.gene72831:CDS | 50.0% | |
| TGTGCTCCTCTCAAGGTCTT+AGG | + | chr5.1:17465160-17465179 | MS.gene72831:intron | 50.0% | |
| ! | AAAGGCGCGGACTTCATCAT+TGG | - | chr5.1:17466643-17466662 | None:intergenic | 50.0% |
| ! | AGAGGAGCACACTCCAAAGT+GGG | - | chr5.1:17465151-17465170 | None:intergenic | 50.0% |
| ! | CAAATCCCTCTAGAAAGGCG+CGG | - | chr5.1:17466656-17466675 | None:intergenic | 50.0% |
| ! | CCCCATTTAAAGCTAGCGCA+AGG | - | chr5.1:17465232-17465251 | None:intergenic | 50.0% |
| ! | CTCCATGTTTAAGGTGGTGG+GGG | - | chr5.1:17465574-17465593 | None:intergenic | 50.0% |
| ! | GCTCCATGTTTAAGGTGGTG+GGG | - | chr5.1:17465575-17465594 | None:intergenic | 50.0% |
| ! | TGATGTCGGTGCTTCTGCTA+TGG | + | chr5.1:17466392-17466411 | MS.gene72831:CDS | 50.0% |
| ! | TTTGGAGTGTGCTCCTCTCA+AGG | + | chr5.1:17465153-17465172 | MS.gene72831:intron | 50.0% |
| !! | CCGAGTAGAGGCTTTGAAAG+AGG | - | chr5.1:17466493-17466512 | None:intergenic | 50.0% |
| !! | GAAGGGATATGGTGTTGTGC+TGG | + | chr5.1:17465623-17465642 | MS.gene72831:intron | 50.0% |
| !!! | CTCGCCTTTTTCGGTTGTGA+AGG | - | chr5.1:17466909-17466928 | None:intergenic | 50.0% |
| AGCTAGCGCAAGGCTCTGTA+TGG | - | chr5.1:17465222-17465241 | None:intergenic | 55.0% | |
| AGTCACGCCTTTCCGAGTAG+AGG | - | chr5.1:17466505-17466524 | None:intergenic | 55.0% | |
| ATGGGGCTCTTGCAAGTGGA+CGG | + | chr5.1:17465246-17465265 | MS.gene72831:intron | 55.0% | |
| CACCCCCACCACCTTAAACA+TGG | + | chr5.1:17465569-17465588 | MS.gene72831:intron | 55.0% | |
| CTGTGCCGCGAAGTGTATTG+CGG | - | chr5.1:17466427-17466446 | None:intergenic | 55.0% | |
| GAAGTCCGCGCCTTTCTAGA+GGG | + | chr5.1:17466648-17466667 | MS.gene72831:CDS | 55.0% | |
| TCATCAACGGTAGCTGCAGG+AGG | - | chr5.1:17466831-17466850 | None:intergenic | 55.0% | |
| TGAAGTCCGCGCCTTTCTAG+AGG | + | chr5.1:17466647-17466666 | MS.gene72831:CDS | 55.0% | |
| ! | GAGAGGAGCACACTCCAAAG+TGG | - | chr5.1:17465152-17465171 | None:intergenic | 55.0% |
| ! | GTTCGAGCTCTGGTTTCAGC+TGG | + | chr5.1:17466465-17466484 | MS.gene72831:CDS | 55.0% |
| !! | TCTCTGGAATTGACGGCCAG+AGG | - | chr5.1:17464754-17464773 | None:intergenic | 55.0% |
| CCACAGAAATCAGGGACCGG+CGG | + | chr5.1:17464664-17464683 | MS.gene72831:CDS | 60.0% | |
| GGCTCTTGCAAGTGGACGGT+GGG | + | chr5.1:17465250-17465269 | MS.gene72831:intron | 60.0% | |
| CCGCCGGTCCCTGATTTCTG+TGG | - | chr5.1:17464667-17464686 | None:intergenic | 65.0% | |
| GGGCTCTTGCAAGTGGACGG+TGG | + | chr5.1:17465249-17465268 | MS.gene72831:intron | 65.0% | |
| CTTCACGCGGCGGCGAGGTC+CGG | + | chr5.1:17464691-17464710 | MS.gene72831:CDS | 75.0% | |
| GACCGGCGGCGACCTTCACG+CGG | + | chr5.1:17464678-17464697 | MS.gene72831:CDS | 75.0% | |
| ! | CGCCGCGTGAAGGTCGCCGC+CGG | - | chr5.1:17464683-17464702 | None:intergenic | 80.0% |
| ! | CGGACCTCGCCGCCGCGTGA+AGG | - | chr5.1:17464693-17464712 | None:intergenic | 80.0% |
| ! | CGGCGGCGACCTTCACGCGG+CGG | + | chr5.1:17464681-17464700 | MS.gene72831:CDS | 80.0% |
| ! | GCGACCTTCACGCGGCGGCG+AGG | + | chr5.1:17464686-17464705 | MS.gene72831:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17464649 | 17466986 | 17464649 | ID=MS.gene72831 |
| chr5.1 | mRNA | 17464649 | 17466986 | 17464649 | ID=MS.gene72831.t1;Parent=MS.gene72831 |
| chr5.1 | exon | 17464649 | 17464791 | 17464649 | ID=MS.gene72831.t1.exon1;Parent=MS.gene72831.t1 |
| chr5.1 | CDS | 17464649 | 17464791 | 17464649 | ID=cds.MS.gene72831.t1;Parent=MS.gene72831.t1 |
| chr5.1 | exon | 17466329 | 17466986 | 17466329 | ID=MS.gene72831.t1.exon2;Parent=MS.gene72831.t1 |
| chr5.1 | CDS | 17466329 | 17466986 | 17466329 | ID=cds.MS.gene72831.t1;Parent=MS.gene72831.t1 |
| Gene Sequence |
| Protein sequence |
