Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070084.t1 | XP_003612598.1 | 87.1 | 263 | 34 | 0 | 1 | 263 | 1 | 263 | 2.40E-29 | 139.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070084.t1 | G7K6T6 | 87.1 | 263 | 34 | 0 | 1 | 263 | 1 | 263 | 1.7e-29 | 139.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene84087 | MS.gene070084 | PPI |
MS.gene018529 | MS.gene070084 | PPI |
MS.gene02595 | MS.gene070084 | PPI |
MS.gene026617 | MS.gene070084 | PPI |
MS.gene065931 | MS.gene070084 | PPI |
MS.gene061923 | MS.gene070084 | PPI |
MS.gene073697 | MS.gene070084 | PPI |
MS.gene062793 | MS.gene070084 | PPI |
MS.gene44226 | MS.gene070084 | PPI |
MS.gene051019 | MS.gene070084 | PPI |
MS.gene25036 | MS.gene070084 | PPI |
MS.gene041675 | MS.gene070084 | PPI |
MS.gene012131 | MS.gene070084 | PPI |
MS.gene63845 | MS.gene070084 | PPI |
MS.gene33587 | MS.gene070084 | PPI |
MS.gene052891 | MS.gene070084 | PPI |
MS.gene89677 | MS.gene070084 | PPI |
MS.gene070084 | MS.gene02544 | PPI |
MS.gene65953 | MS.gene070084 | PPI |
MS.gene070084 | MS.gene040721 | PPI |
MS.gene27398 | MS.gene070084 | PPI |
MS.gene069687 | MS.gene070084 | PPI |
MS.gene08461 | MS.gene070084 | PPI |
MS.gene81045 | MS.gene070084 | PPI |
MS.gene48062 | MS.gene070084 | PPI |
MS.gene64609 | MS.gene070084 | PPI |
MS.gene017616 | MS.gene070084 | PPI |
MS.gene62999 | MS.gene070084 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070084.t1 | MTR_5g026800 | 96.578 | 263 | 9 | 0 | 1 | 263 | 1 | 263 | 0.0 | 514 |
MS.gene070084.t1 | MTR_6g027840 | 37.600 | 125 | 77 | 1 | 12 | 136 | 365 | 488 | 1.06e-16 | 79.7 |
MS.gene070084.t1 | MTR_5g043640 | 35.099 | 151 | 93 | 2 | 15 | 160 | 58 | 208 | 1.09e-16 | 77.4 |
MS.gene070084.t1 | MTR_5g043640 | 32.192 | 146 | 98 | 1 | 15 | 160 | 94 | 238 | 4.02e-13 | 67.8 |
MS.gene070084.t1 | MTR_6g088470 | 32.164 | 171 | 100 | 5 | 3 | 160 | 8 | 175 | 2.16e-15 | 75.9 |
MS.gene070084.t1 | MTR_3g088410 | 34.127 | 126 | 82 | 1 | 15 | 140 | 24 | 148 | 2.44e-15 | 72.0 |
MS.gene070084.t1 | MTR_5g022050 | 31.973 | 147 | 97 | 2 | 15 | 159 | 263 | 408 | 1.55e-14 | 73.2 |
MS.gene070084.t1 | MTR_5g023090 | 30.657 | 137 | 94 | 1 | 15 | 151 | 297 | 432 | 1.32e-13 | 70.5 |
MS.gene070084.t1 | MTR_1g100797 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 9.54e-13 | 68.2 |
MS.gene070084.t1 | MTR_8g056020 | 31.967 | 122 | 82 | 1 | 18 | 139 | 236 | 356 | 5.42e-12 | 65.5 |
MS.gene070084.t1 | MTR_7g117620 | 34.756 | 164 | 98 | 5 | 15 | 169 | 120 | 283 | 6.25e-12 | 65.5 |
MS.gene070084.t1 | MTR_4g062100 | 30.493 | 223 | 128 | 7 | 8 | 204 | 101 | 322 | 9.75e-12 | 65.1 |
MS.gene070084.t1 | MTR_2g048680 | 29.139 | 151 | 104 | 2 | 4 | 152 | 139 | 288 | 1.76e-11 | 63.5 |
MS.gene070084.t1 | MTR_6g088470 | 32.258 | 124 | 76 | 3 | 3 | 121 | 8 | 128 | 2.30e-11 | 63.9 |
MS.gene070084.t1 | MTR_0020s0130 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 4.09e-11 | 63.2 |
MS.gene070084.t1 | MTR_7g100430 | 32.886 | 149 | 96 | 4 | 8 | 152 | 154 | 302 | 5.01e-11 | 62.8 |
MS.gene070084.t1 | MTR_4g021880 | 29.940 | 167 | 95 | 5 | 15 | 160 | 136 | 301 | 6.92e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070084.t1 | AT4G19150 | 56.225 | 249 | 78 | 3 | 14 | 261 | 19 | 237 | 1.00e-82 | 248 |
MS.gene070084.t1 | AT4G19150 | 51.402 | 214 | 73 | 3 | 49 | 261 | 31 | 214 | 1.30e-58 | 186 |
MS.gene070084.t1 | AT5G12320 | 33.858 | 127 | 83 | 1 | 14 | 140 | 14 | 139 | 3.01e-17 | 76.6 |
MS.gene070084.t1 | AT5G40160 | 37.008 | 127 | 80 | 0 | 25 | 151 | 165 | 291 | 6.04e-17 | 79.3 |
MS.gene070084.t1 | AT2G03430 | 34.667 | 150 | 94 | 2 | 15 | 160 | 51 | 200 | 2.13e-16 | 76.6 |
MS.gene070084.t1 | AT2G03430 | 34.752 | 141 | 84 | 4 | 37 | 169 | 39 | 179 | 1.88e-11 | 62.8 |
MS.gene070084.t1 | AT2G03430 | 30.968 | 155 | 99 | 2 | 15 | 162 | 87 | 240 | 2.80e-11 | 62.4 |
MS.gene070084.t1 | AT5G66055 | 34.228 | 149 | 91 | 4 | 15 | 159 | 264 | 409 | 2.22e-16 | 78.6 |
MS.gene070084.t1 | AT3G24530 | 35.417 | 144 | 84 | 3 | 15 | 149 | 19 | 162 | 2.25e-15 | 75.9 |
MS.gene070084.t1 | AT5G40160 | 35.398 | 113 | 73 | 0 | 31 | 143 | 171 | 283 | 1.02e-13 | 70.1 |
MS.gene070084.t1 | AT2G31820 | 35.211 | 142 | 89 | 3 | 15 | 153 | 228 | 369 | 2.98e-13 | 69.7 |
MS.gene070084.t1 | AT1G05640 | 37.255 | 153 | 86 | 5 | 8 | 153 | 184 | 333 | 7.40e-13 | 68.6 |
MS.gene070084.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene070084.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene070084.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene070084.t1 | AT3G09890 | 32.692 | 156 | 97 | 2 | 14 | 161 | 42 | 197 | 8.52e-12 | 63.2 |
MS.gene070084.t1 | AT2G28840 | 33.333 | 174 | 80 | 8 | 15 | 160 | 50 | 215 | 9.11e-12 | 65.1 |
MS.gene070084.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 9.31e-12 | 65.1 |
MS.gene070084.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 9.31e-12 | 65.1 |
MS.gene070084.t1 | AT5G53470 | 32.374 | 139 | 56 | 3 | 15 | 151 | 222 | 324 | 1.14e-11 | 64.3 |
MS.gene070084.t1 | AT5G07270 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 1.86e-11 | 64.3 |
MS.gene070084.t1 | AT2G26650 | 31.081 | 148 | 99 | 2 | 4 | 151 | 544 | 688 | 2.27e-11 | 64.3 |
MS.gene070084.t1 | AT5G60070 | 34.416 | 154 | 88 | 5 | 8 | 152 | 104 | 253 | 2.75e-11 | 63.9 |
MS.gene070084.t1 | AT5G20350 | 32.203 | 177 | 102 | 6 | 15 | 183 | 102 | 268 | 6.59e-11 | 62.8 |
MS.gene070084.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 173 | 322 | 6.85e-11 | 62.8 |
MS.gene070084.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 173 | 322 | 6.85e-11 | 62.8 |
MS.gene070084.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 180 | 329 | 7.76e-11 | 62.4 |
MS.gene070084.t1 | AT4G27780 | 28.873 | 142 | 63 | 3 | 15 | 154 | 237 | 342 | 9.92e-11 | 61.6 |
Find 72 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGATTCTTCAGGTGCTTT+TGG | 0.220900 | 5.4:-17723396 | None:intergenic |
AGTGAGACTTGCCCCTTTCT+TGG | 0.248840 | 5.4:-17723217 | None:intergenic |
AAACTCTTCACAACCGAAAA+AGG | 0.282462 | 5.4:+17723542 | MS.gene070084:CDS |
GTCCCTGATTTCTGTGGATT+TGG | 0.294656 | 5.4:-17721335 | None:intergenic |
CAACCTACAGGGTCTCTTCT+TGG | 0.315944 | 5.4:-17723605 | None:intergenic |
GCCTTTGGATCAGATTCTTC+AGG | 0.317269 | 5.4:-17723405 | None:intergenic |
TGCTTCTGCTATGGATGATA+TGG | 0.344938 | 5.4:+17723041 | MS.gene070084:CDS |
CTTGGACATCATCTGAACTT+TGG | 0.372832 | 5.4:-17723587 | None:intergenic |
TAATTGAGGATACGGTGTTC+TGG | 0.393428 | 5.4:-17721459 | None:intergenic |
CTTCATGCGGCGGCAAGGTC+CGG | 0.398665 | 5.4:+17721368 | MS.gene070084:CDS |
AAACCAAATCCACAGAAATC+AGG | 0.401690 | 5.4:+17721332 | MS.gene070084:CDS |
TGCTGTTCAAGGTTCCCATC+TGG | 0.407073 | 5.4:+17723176 | MS.gene070084:CDS |
CCTAAAGAGGATGATGCCTT+TGG | 0.430235 | 5.4:-17723420 | None:intergenic |
GTCAAGTACTTATCCAAGAA+AGG | 0.442200 | 5.4:+17723204 | MS.gene070084:CDS |
CCAAAGGCATCATCCTCTTT+AGG | 0.445769 | 5.4:+17723420 | MS.gene070084:CDS |
CGCCGCATGAAGGTCGCCGC+CGG | 0.459979 | 5.4:-17721357 | None:intergenic |
TTCACTACTCAAATTACCTT+CGG | 0.461363 | 5.4:-17723445 | None:intergenic |
GTTCGAACTCTGGTTTCAGC+TGG | 0.463456 | 5.4:+17723105 | MS.gene070084:CDS |
TGTTCTGGAGTGCTTATCTC+TGG | 0.471688 | 5.4:-17721444 | None:intergenic |
CTCACTATCAAGACAAAGGC+AGG | 0.472180 | 5.4:+17723234 | MS.gene070084:CDS |
TCAAGTACTTATCCAAGAAA+GGG | 0.475565 | 5.4:+17723205 | MS.gene070084:CDS |
TTTAGAAGTTGTTCGAACTC+TGG | 0.476082 | 5.4:+17723095 | MS.gene070084:CDS |
CCGAGTAGCGGCTTTGAAAG+AGG | 0.477525 | 5.4:-17723130 | None:intergenic |
TGGTGAGAAAGAGAAGAGGA+AGG | 0.484213 | 5.4:+17723497 | MS.gene070084:CDS |
CATTGGTAGCAAGATCCAAT+GGG | 0.488232 | 5.4:-17723263 | None:intergenic |
TTTGAAAAGTCAGCTAAGAA+TGG | 0.495928 | 5.4:+17723312 | MS.gene070084:CDS |
AAAGGAGCGGACTTCATCAT+TGG | 0.515117 | 5.4:-17723280 | None:intergenic |
GTGCTTATCTCTGGAATTGA+CGG | 0.516931 | 5.4:-17721435 | None:intergenic |
GGGTAATGAAGATGATGAAA+GGG | 0.517277 | 5.4:+17723518 | MS.gene070084:CDS |
TCTTCATCAACAGTAGCTGC+AGG | 0.519575 | 5.4:-17723471 | None:intergenic |
CCTTGAACAGCAAAATGTAA+TGG | 0.521701 | 5.4:-17723165 | None:intergenic |
ATTACCTTCGGAGCCTAAAG+AGG | 0.537106 | 5.4:-17723433 | None:intergenic |
CGGACCTTGCCGCCGCATGA+AGG | 0.544030 | 5.4:-17721367 | None:intergenic |
GCGACCTTCATGCGGCGGCA+AGG | 0.544925 | 5.4:+17721363 | MS.gene070084:CDS |
CCTCTTTCAAAGCCGCTACT+CGG | 0.546704 | 5.4:+17723130 | MS.gene070084:CDS |
AGGGTAATGAAGATGATGAA+AGG | 0.548445 | 5.4:+17723517 | MS.gene070084:CDS |
TTCAAAGCCGCTACTCGGAA+AGG | 0.550795 | 5.4:+17723135 | MS.gene070084:CDS |
CATCATCTGAACTTTGGAGA+TGG | 0.551884 | 5.4:-17723581 | None:intergenic |
TGATGTCGGTGCTTCTGCTA+TGG | 0.553962 | 5.4:+17723032 | MS.gene070084:CDS |
TCATTGGTAGCAAGATCCAA+TGG | 0.558682 | 5.4:-17723264 | None:intergenic |
ACCTGAAGAATCTGATCCAA+AGG | 0.559801 | 5.4:+17723404 | MS.gene070084:CDS |
CATCAGCTTTATTCTTGCAG+AGG | 0.562565 | 5.4:-17723014 | None:intergenic |
CCGCCGGTCCCTGATTTCTG+TGG | 0.567523 | 5.4:-17721341 | None:intergenic |
AACCAAATCCACAGAAATCA+GGG | 0.569694 | 5.4:+17721333 | MS.gene070084:CDS |
CGGCGGCGACCTTCATGCGG+CGG | 0.573003 | 5.4:+17721358 | MS.gene070084:CDS |
AAAGTGGTGAGAAAGAGAAG+AGG | 0.577048 | 5.4:+17723493 | MS.gene070084:CDS |
GGTGAGAAAGAGAAGAGGAA+GGG | 0.577937 | 5.4:+17723498 | MS.gene070084:CDS |
TCATCCTCTTTAGGCTCCGA+AGG | 0.581554 | 5.4:+17723429 | MS.gene070084:CDS |
GACCGGCGGCGACCTTCATG+CGG | 0.583532 | 5.4:+17721355 | MS.gene070084:CDS |
AGTACTTGACAAGTTCCAGA+TGG | 0.589385 | 5.4:-17723191 | None:intergenic |
CTGTGCCGCGAAGTGTATTG+CGG | 0.594539 | 5.4:-17723064 | None:intergenic |
TATGGCCGCAATACACTTCG+CGG | 0.596559 | 5.4:+17723059 | MS.gene070084:CDS |
TCTCTGGAATTGACGGCCAG+AGG | 0.598799 | 5.4:-17721428 | None:intergenic |
ATACACTTCGCGGCACAGAA+AGG | 0.600317 | 5.4:+17723069 | MS.gene070084:CDS |
CTGAACTGTAATCAGATCAC+CGG | 0.610660 | 5.4:-17721387 | None:intergenic |
GAAGTCCGCTCCTTTCTAGA+GGG | 0.610884 | 5.4:+17723288 | MS.gene070084:CDS |
AAAGGCAGGAAAGACCCCAT+TGG | 0.612270 | 5.4:+17723248 | MS.gene070084:CDS |
AAGAACGAAGATAAAACTGA+AGG | 0.613960 | 5.4:+17723342 | MS.gene070084:CDS |
AATCCACAGAAATCAGGGAC+CGG | 0.618128 | 5.4:+17721338 | MS.gene070084:CDS |
TGAAGTCCGCTCCTTTCTAG+AGG | 0.622198 | 5.4:+17723287 | MS.gene070084:CDS |
CAAGTACTTATCCAAGAAAG+GGG | 0.626997 | 5.4:+17723206 | MS.gene070084:CDS |
CAAATCCCTCTAGAAAGGAG+CGG | 0.629038 | 5.4:-17723293 | None:intergenic |
GCTACTGTTGATGAAGAAAG+TGG | 0.635967 | 5.4:+17723477 | MS.gene070084:CDS |
TGCAAGAATAAAGCTGATGT+CGG | 0.636789 | 5.4:+17723018 | MS.gene070084:CDS |
GTACTTGACAAGTTCCAGAT+GGG | 0.651589 | 5.4:-17723190 | None:intergenic |
TCATCAACAGTAGCTGCAGG+AGG | 0.660427 | 5.4:-17723468 | None:intergenic |
AGTCACGCCTTTCCGAGTAG+CGG | 0.663740 | 5.4:-17723142 | None:intergenic |
AAGTCTCACTATCAAGACAA+AGG | 0.667954 | 5.4:+17723230 | MS.gene070084:CDS |
CCACAGAAATCAGGGACCGG+CGG | 0.674685 | 5.4:+17721341 | MS.gene070084:CDS |
TGTCCAAGAAGAGACCCTGT+AGG | 0.707431 | 5.4:+17723602 | MS.gene070084:CDS |
TATGCCTCTACCAACCTACA+GGG | 0.721432 | 5.4:-17723616 | None:intergenic |
ATTGGTAGCAAGATCCAATG+GGG | 0.757229 | 5.4:-17723262 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTATATATTTCTTTCTA+AGG | + | chr5.4:17722176-17722195 | MS.gene070084:intron | 15.0% |
!! | ATAATATACAGTAACAAAAT+TGG | - | chr5.4:17722392-17722411 | None:intergenic | 15.0% |
!! | ATTATTGTAAAAATATCTAC+AGG | + | chr5.4:17722316-17722335 | MS.gene070084:intron | 15.0% |
!! | TAATATACAGTAACAAAATT+GGG | - | chr5.4:17722391-17722410 | None:intergenic | 15.0% |
!! | TCAAATAAATTAATCCAAAT+AGG | + | chr5.4:17722031-17722050 | MS.gene070084:intron | 15.0% |
!!! | ACATTACTTTTAAAATATCT+GGG | - | chr5.4:17722161-17722180 | None:intergenic | 15.0% |
!!! | TACATTACTTTTAAAATATC+TGG | - | chr5.4:17722162-17722181 | None:intergenic | 15.0% |
!! | AATATACAGTAACAAAATTG+GGG | - | chr5.4:17722390-17722409 | None:intergenic | 20.0% |
!! | CTTATGTATACTATTGTAAA+AGG | + | chr5.4:17721617-17721636 | MS.gene070084:intron | 20.0% |
!! | GTTTCTTTAACATACATATT+TGG | + | chr5.4:17722802-17722821 | MS.gene070084:intron | 20.0% |
!! | TTAAGGAAGATAATTTAGTT+TGG | + | chr5.4:17722728-17722747 | MS.gene070084:intron | 20.0% |
!!! | ACAAGAAAATTTTAATTCTC+AGG | - | chr5.4:17722475-17722494 | None:intergenic | 20.0% |
!!! | ATTACTTTTAAAATATCTGG+GGG | - | chr5.4:17722159-17722178 | None:intergenic | 20.0% |
!!! | ATTTTACATGATTGTATTCT+GGG | + | chr5.4:17722694-17722713 | MS.gene070084:intron | 20.0% |
!!! | CATTACTTTTAAAATATCTG+GGG | - | chr5.4:17722160-17722179 | None:intergenic | 20.0% |
! | AAAATGAAAATCACACATGA+AGG | + | chr5.4:17722245-17722264 | MS.gene070084:intron | 25.0% |
! | AAATGAAAATCACACATGAA+GGG | + | chr5.4:17722246-17722265 | MS.gene070084:intron | 25.0% |
! | AATATGCATGTTTCTTTCTA+AGG | - | chr5.4:17722299-17722318 | None:intergenic | 25.0% |
! | ATAAGGAAGAATACTTTATC+TGG | + | chr5.4:17722871-17722890 | MS.gene070084:intron | 25.0% |
! | ATATACAGTAACAAAATTGG+GGG | - | chr5.4:17722389-17722408 | None:intergenic | 25.0% |
! | ATCATGTAAAATGTAGTCTA+TGG | - | chr5.4:17722686-17722705 | None:intergenic | 25.0% |
! | CATTAATGATAACCATGTAA+TGG | - | chr5.4:17722059-17722078 | None:intergenic | 25.0% |
! | CATTACATGGTTATCATTAA+TGG | + | chr5.4:17722057-17722076 | MS.gene070084:intron | 25.0% |
! | TAAGGAAGAATACTTTATCT+GGG | + | chr5.4:17722872-17722891 | MS.gene070084:intron | 25.0% |
! | TGAAGAGTTATGAAAATAAG+CGG | + | chr5.4:17721703-17721722 | MS.gene070084:intron | 25.0% |
! | TGTAGTCTATTGTTCAAATT+TGG | - | chr5.4:17722955-17722974 | None:intergenic | 25.0% |
!! | ATTTTAGATGACTGTATTCT+GGG | + | chr5.4:17722837-17722856 | MS.gene070084:intron | 25.0% |
!! | CATTTTACATGATTGTATTC+TGG | + | chr5.4:17722693-17722712 | MS.gene070084:intron | 25.0% |
!! | GAAGTTACTAGATTTTTCTT+TGG | + | chr5.4:17722616-17722635 | MS.gene070084:intron | 25.0% |
!! | GTCATCTAAAATATAGTCTA+TGG | - | chr5.4:17722829-17722848 | None:intergenic | 25.0% |
!! | TTTTACATGATTGTATTCTG+GGG | + | chr5.4:17722695-17722714 | MS.gene070084:intron | 25.0% |
!!! | AATTTTGATTTCAAATCCTC+TGG | + | chr5.4:17721412-17721431 | MS.gene070084:CDS | 25.0% |
!!! | TATTTTAGATGACTGTATTC+TGG | + | chr5.4:17722836-17722855 | MS.gene070084:intron | 25.0% |
AAGAACGAAGATAAAACTGA+AGG | + | chr5.4:17723342-17723361 | MS.gene070084:CDS | 30.0% | |
AGAGGTTTAAACCAAAAGTT+GGG | + | chr5.4:17722081-17722100 | MS.gene070084:intron | 30.0% | |
AGTTATGACATACAAGAGTT+TGG | + | chr5.4:17722130-17722149 | MS.gene070084:intron | 30.0% | |
ATAAGGAGGAAAACTTTATC+TGG | + | chr5.4:17722590-17722609 | MS.gene070084:intron | 30.0% | |
GATGACATGAAAAAGAGTTA+GGG | - | chr5.4:17721494-17721513 | None:intergenic | 30.0% | |
GTTATGACATACAAGAGTTT+GGG | + | chr5.4:17722131-17722150 | MS.gene070084:intron | 30.0% | |
TAAGGAGGAAAACTTTATCT+GGG | + | chr5.4:17722591-17722610 | MS.gene070084:intron | 30.0% | |
TCAAGTACTTATCCAAGAAA+GGG | + | chr5.4:17723205-17723224 | MS.gene070084:CDS | 30.0% | |
TGATGACATGAAAAAGAGTT+AGG | - | chr5.4:17721495-17721514 | None:intergenic | 30.0% | |
TGGATGTTAAAGAAACAACA+AGG | - | chr5.4:17722935-17722954 | None:intergenic | 30.0% | |
TGGTAAAGTTAGTAGTAACT+GGG | + | chr5.4:17722748-17722767 | MS.gene070084:intron | 30.0% | |
TTCACTACTCAAATTACCTT+CGG | - | chr5.4:17723448-17723467 | None:intergenic | 30.0% | |
TTGGTAAAGTTAGTAGTAAC+TGG | + | chr5.4:17722747-17722766 | MS.gene070084:intron | 30.0% | |
TTTGAAAAGTCAGCTAAGAA+TGG | + | chr5.4:17723312-17723331 | MS.gene070084:CDS | 30.0% | |
! | ATGCTATTTATCTGCTTGTT+AGG | + | chr5.4:17722434-17722453 | MS.gene070084:intron | 30.0% |
! | TACATTTAGCTGCATTTTCT+GGG | + | chr5.4:17722971-17722990 | MS.gene070084:CDS | 30.0% |
! | TGCTATTTATCTGCTTGTTA+GGG | + | chr5.4:17722435-17722454 | MS.gene070084:intron | 30.0% |
! | TTCTTCGTTTTCTTTTGGAT+CGG | - | chr5.4:17723370-17723389 | None:intergenic | 30.0% |
!! | TGTGTTCTAGAGAGAAAATA+AGG | + | chr5.4:17722573-17722592 | MS.gene070084:intron | 30.0% |
!! | TTTTTGAAAGCCTAGTCTAA+GGG | - | chr5.4:17721939-17721958 | None:intergenic | 30.0% |
!!! | TTTTTTGAAAGCCTAGTCTA+AGG | - | chr5.4:17721940-17721959 | None:intergenic | 30.0% |
AAACCAAATCCACAGAAATC+AGG | + | chr5.4:17721332-17721351 | MS.gene070084:CDS | 35.0% | |
AAACTCTTCACAACCGAAAA+AGG | + | chr5.4:17723542-17723561 | MS.gene070084:CDS | 35.0% | |
AAATCACACATGAAGGGATA+TGG | + | chr5.4:17722252-17722271 | MS.gene070084:intron | 35.0% | |
AAATGTAGTCTATGGTCCAA+AGG | - | chr5.4:17722678-17722697 | None:intergenic | 35.0% | |
AACCAAATCCACAGAAATCA+GGG | + | chr5.4:17721333-17721352 | MS.gene070084:CDS | 35.0% | |
AAGGAGGAAAACTTTATCTG+GGG | + | chr5.4:17722592-17722611 | MS.gene070084:intron | 35.0% | |
AAGTCTCACTATCAAGACAA+AGG | + | chr5.4:17723230-17723249 | MS.gene070084:CDS | 35.0% | |
ACCCATTAAAAGCTAAAGCA+AGG | - | chr5.4:17721872-17721891 | None:intergenic | 35.0% | |
AGGGTAATGAAGATGATGAA+AGG | + | chr5.4:17723517-17723536 | MS.gene070084:CDS | 35.0% | |
ATGGTTATCATTAATGGCAG+AGG | + | chr5.4:17722063-17722082 | MS.gene070084:intron | 35.0% | |
ATTGAACCCCTCGAATTAAT+CGG | + | chr5.4:17721913-17721932 | MS.gene070084:intron | 35.0% | |
CAAGTACTTATCCAAGAAAG+GGG | + | chr5.4:17723206-17723225 | MS.gene070084:CDS | 35.0% | |
CAGAGGTTTAAACCAAAAGT+TGG | + | chr5.4:17722080-17722099 | MS.gene070084:intron | 35.0% | |
CCTTGAACAGCAAAATGTAA+TGG | - | chr5.4:17723168-17723187 | None:intergenic | 35.0% | |
GACTGTATTCTGGGTATATT+GGG | + | chr5.4:17722846-17722865 | MS.gene070084:intron | 35.0% | |
GAGGTTTAAACCAAAAGTTG+GGG | + | chr5.4:17722082-17722101 | MS.gene070084:intron | 35.0% | |
GCACATCTTAGTTATGACAT+AGG | - | chr5.4:17722354-17722373 | None:intergenic | 35.0% | |
GGGTAATGAAGATGATGAAA+GGG | + | chr5.4:17723518-17723537 | MS.gene070084:CDS | 35.0% | |
GTCAAGTACTTATCCAAGAA+AGG | + | chr5.4:17723204-17723223 | MS.gene070084:CDS | 35.0% | |
GTTTCTTCAACAATCACCTT+TGG | + | chr5.4:17722659-17722678 | MS.gene070084:intron | 35.0% | |
TAAGCTGCAAATAAGCGTTA+GGG | - | chr5.4:17721570-17721589 | None:intergenic | 35.0% | |
TCATAACTAAGATGTGCCAT+TGG | + | chr5.4:17722357-17722376 | MS.gene070084:intron | 35.0% | |
TCTGGGGAAAATTGGAATTA+AGG | + | chr5.4:17722711-17722730 | MS.gene070084:intron | 35.0% | |
TCTGGGTATATTGGGAAATA+AGG | + | chr5.4:17722854-17722873 | MS.gene070084:intron | 35.0% | |
TGACTGTATTCTGGGTATAT+TGG | + | chr5.4:17722845-17722864 | MS.gene070084:intron | 35.0% | |
TGCAAGAATAAAGCTGATGT+CGG | + | chr5.4:17723018-17723037 | MS.gene070084:CDS | 35.0% | |
TTTAGAAGTTGTTCGAACTC+TGG | + | chr5.4:17723095-17723114 | MS.gene070084:CDS | 35.0% | |
! | CGAAGTAACTGAGTTTTTCT+TGG | + | chr5.4:17722895-17722914 | MS.gene070084:intron | 35.0% |
! | CTACATTTAGCTGCATTTTC+TGG | + | chr5.4:17722970-17722989 | MS.gene070084:CDS | 35.0% |
! | GATTGTATTCTGGGGAAAAT+TGG | + | chr5.4:17722703-17722722 | MS.gene070084:intron | 35.0% |
! | TCGGATTCTTCGTTTTCTTT+TGG | - | chr5.4:17723375-17723394 | None:intergenic | 35.0% |
! | TTTTTGCTCCATGTTTAAGG+TGG | - | chr5.4:17722220-17722239 | None:intergenic | 35.0% |
!! | ATGGACTAGTCTATCGAAAT+TGG | - | chr5.4:17721843-17721862 | None:intergenic | 35.0% |
!! | CTTTTCAAATCCCTCTAGAA+AGG | - | chr5.4:17723301-17723320 | None:intergenic | 35.0% |
!! | GTTCTAGAGAGAAAATAAGG+AGG | + | chr5.4:17722576-17722595 | MS.gene070084:intron | 35.0% |
!! | TGCGTTGATAATTGAGGATA+CGG | - | chr5.4:17721470-17721489 | None:intergenic | 35.0% |
!! | TGCTTTTTGCTCCATGTTTA+AGG | - | chr5.4:17722223-17722242 | None:intergenic | 35.0% |
!!! | AGCCTTGCTTTAGCTTTTAA+TGG | + | chr5.4:17721867-17721886 | MS.gene070084:intron | 35.0% |
!!! | CCATTACATTTTGCTGTTCA+AGG | + | chr5.4:17723165-17723184 | MS.gene070084:CDS | 35.0% |
!!! | GCCTTGCTTTAGCTTTTAAT+GGG | + | chr5.4:17721868-17721887 | MS.gene070084:intron | 35.0% |
AAAGTGGTGAGAAAGAGAAG+AGG | + | chr5.4:17723493-17723512 | MS.gene070084:CDS | 40.0% | |
AAATTGGGGGTGATAACCAA+TGG | - | chr5.4:17722376-17722395 | None:intergenic | 40.0% | |
AATTAATCGGCCCTTAGACT+AGG | + | chr5.4:17721926-17721945 | MS.gene070084:intron | 40.0% | |
ACCATGTAATGGTGCCTATT+TGG | - | chr5.4:17722048-17722067 | None:intergenic | 40.0% | |
ACCTGAAGAATCTGATCCAA+AGG | + | chr5.4:17723404-17723423 | MS.gene070084:CDS | 40.0% | |
AGTACTTGACAAGTTCCAGA+TGG | - | chr5.4:17723194-17723213 | None:intergenic | 40.0% | |
AGTAGTAACTGGGTTTCACT+TGG | + | chr5.4:17722758-17722777 | MS.gene070084:intron | 40.0% | |
AGTTATGACATAGGAGAGCT+AGG | - | chr5.4:17722345-17722364 | None:intergenic | 40.0% | |
CTGAACTGTAATCAGATCAC+CGG | - | chr5.4:17721390-17721409 | None:intergenic | 40.0% | |
CTTCTGCATGTATGTGTCTA+TGG | + | chr5.4:17722521-17722540 | MS.gene070084:intron | 40.0% | |
CTTGGACATCATCTGAACTT+TGG | - | chr5.4:17723590-17723609 | None:intergenic | 40.0% | |
GTAAGCTGCAAATAAGCGTT+AGG | - | chr5.4:17721571-17721590 | None:intergenic | 40.0% | |
GTACTTGACAAGTTCCAGAT+GGG | - | chr5.4:17723193-17723212 | None:intergenic | 40.0% | |
GTAGTAACTGGGTTTCACTT+GGG | + | chr5.4:17722759-17722778 | MS.gene070084:intron | 40.0% | |
GTTATGACATAGGAGAGCTA+GGG | - | chr5.4:17722344-17722363 | None:intergenic | 40.0% | |
TAATTGAGGATACGGTGTTC+TGG | - | chr5.4:17721462-17721481 | None:intergenic | 40.0% | |
TCCAAATAGGCACCATTACA+TGG | + | chr5.4:17722044-17722063 | MS.gene070084:intron | 40.0% | |
TGCTTCTGCTATGGATGATA+TGG | + | chr5.4:17723041-17723060 | MS.gene070084:CDS | 40.0% | |
TTAAACCAAAAGTTGGGGCA+TGG | + | chr5.4:17722087-17722106 | MS.gene070084:intron | 40.0% | |
! | ATTGGTAGCAAGATCCAATG+GGG | - | chr5.4:17723265-17723284 | None:intergenic | 40.0% |
! | CATCATCTGAACTTTGGAGA+TGG | - | chr5.4:17723584-17723603 | None:intergenic | 40.0% |
! | CATTGGTAGCAAGATCCAAT+GGG | - | chr5.4:17723266-17723285 | None:intergenic | 40.0% |
! | GCTACTGTTGATGAAGAAAG+TGG | + | chr5.4:17723477-17723496 | MS.gene070084:CDS | 40.0% |
! | TCAGATTCTTCAGGTGCTTT+TGG | - | chr5.4:17723399-17723418 | None:intergenic | 40.0% |
! | TCATTGGTAGCAAGATCCAA+TGG | - | chr5.4:17723267-17723286 | None:intergenic | 40.0% |
! | TTCTTCAGGTGCTTTTGGAT+CGG | - | chr5.4:17723394-17723413 | None:intergenic | 40.0% |
! | TTTAATGGGTCTCTTGCAAG+TGG | + | chr5.4:17721882-17721901 | MS.gene070084:intron | 40.0% |
!! | CATCAGCTTTATTCTTGCAG+AGG | - | chr5.4:17723017-17723036 | None:intergenic | 40.0% |
!! | GTGCTTATCTCTGGAATTGA+CGG | - | chr5.4:17721438-17721457 | None:intergenic | 40.0% |
!! | TAGGGTTGCGTTGATAATTG+AGG | - | chr5.4:17721476-17721495 | None:intergenic | 40.0% |
AATCCACAGAAATCAGGGAC+CGG | + | chr5.4:17721338-17721357 | MS.gene070084:CDS | 45.0% | |
AGCTAAAGCAAGGCTCTGTA+TGG | - | chr5.4:17721862-17721881 | None:intergenic | 45.0% | |
ATAAGCTAACCCACTTGGGT+TGG | + | chr5.4:17721748-17721767 | MS.gene070084:intron | 45.0% | |
ATCGAACCTAAGACCTTGAG+AGG | - | chr5.4:17721809-17721828 | None:intergenic | 45.0% | |
ATGCCATAAGCTAACCCACT+TGG | + | chr5.4:17721743-17721762 | MS.gene070084:intron | 45.0% | |
ATTACCTTCGGAGCCTAAAG+AGG | - | chr5.4:17723436-17723455 | None:intergenic | 45.0% | |
CCTAAAGAGGATGATGCCTT+TGG | - | chr5.4:17723423-17723442 | None:intergenic | 45.0% | |
CTAAGGGCCGATTAATTCGA+GGG | - | chr5.4:17721923-17721942 | None:intergenic | 45.0% | |
CTCACTATCAAGACAAAGGC+AGG | + | chr5.4:17723234-17723253 | MS.gene070084:CDS | 45.0% | |
GCCTTTGGATCAGATTCTTC+AGG | - | chr5.4:17723408-17723427 | None:intergenic | 45.0% | |
GGTGAGAAAGAGAAGAGGAA+GGG | + | chr5.4:17723498-17723517 | MS.gene070084:CDS | 45.0% | |
GTCCCTGATTTCTGTGGATT+TGG | - | chr5.4:17721338-17721357 | None:intergenic | 45.0% | |
GTCTTAGGTTCGATTACCTC+TGG | + | chr5.4:17721815-17721834 | MS.gene070084:intron | 45.0% | |
TAAGGGCCGATTAATTCGAG+GGG | - | chr5.4:17721922-17721941 | None:intergenic | 45.0% | |
TCTAAGGGCCGATTAATTCG+AGG | - | chr5.4:17721924-17721943 | None:intergenic | 45.0% | |
TCTATCGAAATTGGCACCAG+AGG | - | chr5.4:17721834-17721853 | None:intergenic | 45.0% | |
TCTTCATCAACAGTAGCTGC+AGG | - | chr5.4:17723474-17723493 | None:intergenic | 45.0% | |
TGCCATAAGCTAACCCACTT+GGG | + | chr5.4:17721744-17721763 | MS.gene070084:intron | 45.0% | |
TGGTGAGAAAGAGAAGAGGA+AGG | + | chr5.4:17723497-17723516 | MS.gene070084:CDS | 45.0% | |
! | AAAGGAGCGGACTTCATCAT+TGG | - | chr5.4:17723283-17723302 | None:intergenic | 45.0% |
! | AGCTGAACTCTCGCCTTTTT+CGG | - | chr5.4:17723558-17723577 | None:intergenic | 45.0% |
! | CAAATCCCTCTAGAAAGGAG+CGG | - | chr5.4:17723296-17723315 | None:intergenic | 45.0% |
! | TGCTCCATGTTTAAGGTGGT+GGG | - | chr5.4:17722216-17722235 | None:intergenic | 45.0% |
! | TTGCTCCATGTTTAAGGTGG+TGG | - | chr5.4:17722217-17722236 | None:intergenic | 45.0% |
!! | AACCCAAGTGGGTTAGCTTA+TGG | - | chr5.4:17721749-17721768 | None:intergenic | 45.0% |
!! | CCAAAGGCATCATCCTCTTT+AGG | + | chr5.4:17723420-17723439 | MS.gene070084:CDS | 45.0% |
!! | TGTTCTGGAGTGCTTATCTC+TGG | - | chr5.4:17721447-17721466 | None:intergenic | 45.0% |
AAAGGCAGGAAAGACCCCAT+TGG | + | chr5.4:17723248-17723267 | MS.gene070084:CDS | 50.0% | |
AACCAAAAGTTGGGGCATGG+AGG | + | chr5.4:17722090-17722109 | MS.gene070084:intron | 50.0% | |
AGTGAGACTTGCCCCTTTCT+TGG | - | chr5.4:17723220-17723239 | None:intergenic | 50.0% | |
ATACACTTCGCGGCACAGAA+AGG | + | chr5.4:17723069-17723088 | MS.gene070084:CDS | 50.0% | |
ATGGGTCTCTTGCAAGTGGA+CGG | + | chr5.4:17721886-17721905 | MS.gene070084:intron | 50.0% | |
CCTCTTTCAAAGCCGCTACT+CGG | + | chr5.4:17723130-17723149 | MS.gene070084:CDS | 50.0% | |
GAAGTCCGCTCCTTTCTAGA+GGG | + | chr5.4:17723288-17723307 | MS.gene070084:CDS | 50.0% | |
TATGGCCGCAATACACTTCG+CGG | + | chr5.4:17723059-17723078 | MS.gene070084:CDS | 50.0% | |
TCATCAACAGTAGCTGCAGG+AGG | - | chr5.4:17723471-17723490 | None:intergenic | 50.0% | |
TCATCCTCTTTAGGCTCCGA+AGG | + | chr5.4:17723429-17723448 | MS.gene070084:CDS | 50.0% | |
TGAAGTCCGCTCCTTTCTAG+AGG | + | chr5.4:17723287-17723306 | MS.gene070084:CDS | 50.0% | |
TGCTGTTCAAGGTTCCCATC+TGG | + | chr5.4:17723176-17723195 | MS.gene070084:CDS | 50.0% | |
TGTGGTCCTCTCAAGGTCTT+AGG | + | chr5.4:17721800-17721819 | MS.gene070084:intron | 50.0% | |
TTCAAAGCCGCTACTCGGAA+AGG | + | chr5.4:17723135-17723154 | MS.gene070084:CDS | 50.0% | |
! | ATCCTCCATGCCCCAACTTT+TGG | - | chr5.4:17722095-17722114 | None:intergenic | 50.0% |
! | CTCCATGTTTAAGGTGGTGG+GGG | - | chr5.4:17722214-17722233 | None:intergenic | 50.0% |
! | GCTCCATGTTTAAGGTGGTG+GGG | - | chr5.4:17722215-17722234 | None:intergenic | 50.0% |
! | GTTCGAACTCTGGTTTCAGC+TGG | + | chr5.4:17723105-17723124 | MS.gene070084:CDS | 50.0% |
! | TGATGTCGGTGCTTCTGCTA+TGG | + | chr5.4:17723032-17723051 | MS.gene070084:CDS | 50.0% |
! | TGGTTTGGGATCTAGGAGTG+TGG | + | chr5.4:17721782-17721801 | MS.gene070084:intron | 50.0% |
!! | GAAGGGATATGGTGTTGTGC+TGG | + | chr5.4:17722263-17722282 | MS.gene070084:intron | 50.0% |
AGTCACGCCTTTCCGAGTAG+CGG | - | chr5.4:17723145-17723164 | None:intergenic | 55.0% | |
CACCCCCACCACCTTAAACA+TGG | + | chr5.4:17722209-17722228 | MS.gene070084:intron | 55.0% | |
CTGTGCCGCGAAGTGTATTG+CGG | - | chr5.4:17723067-17723086 | None:intergenic | 55.0% | |
GTCTCTTGCAAGTGGACGGT+GGG | + | chr5.4:17721890-17721909 | MS.gene070084:intron | 55.0% | |
! | CTAGGAGTGTGGTCCTCTCA+AGG | + | chr5.4:17721793-17721812 | MS.gene070084:intron | 55.0% |
!! | CCGAGTAGCGGCTTTGAAAG+AGG | - | chr5.4:17723133-17723152 | None:intergenic | 55.0% |
!! | CTAACCCACTTGGGTTGGTC+AGG | + | chr5.4:17721753-17721772 | MS.gene070084:intron | 55.0% |
!! | GTGGGGTTGGTTTGGGATCT+AGG | + | chr5.4:17721775-17721794 | MS.gene070084:intron | 55.0% |
!! | TCTCTGGAATTGACGGCCAG+AGG | - | chr5.4:17721431-17721450 | None:intergenic | 55.0% |
!! | TGGTCAGGTGGGGTTGGTTT+GGG | + | chr5.4:17721768-17721787 | MS.gene070084:intron | 55.0% |
!! | TTGGTCAGGTGGGGTTGGTT+TGG | + | chr5.4:17721767-17721786 | MS.gene070084:intron | 55.0% |
CCACAGAAATCAGGGACCGG+CGG | + | chr5.4:17721341-17721360 | MS.gene070084:CDS | 60.0% | |
CCCACCTGACCAACCCAAGT+GGG | - | chr5.4:17721760-17721779 | None:intergenic | 60.0% | |
GGTCTCTTGCAAGTGGACGG+TGG | + | chr5.4:17721889-17721908 | MS.gene070084:intron | 60.0% | |
!! | ACCCACTTGGGTTGGTCAGG+TGG | + | chr5.4:17721756-17721775 | MS.gene070084:intron | 60.0% |
!! | CCACTTGGGTTGGTCAGGTG+GGG | + | chr5.4:17721758-17721777 | MS.gene070084:intron | 60.0% |
!! | CCCACTTGGGTTGGTCAGGT+GGG | + | chr5.4:17721757-17721776 | MS.gene070084:intron | 60.0% |
!! | TTGGGTTGGTCAGGTGGGGT+TGG | + | chr5.4:17721762-17721781 | MS.gene070084:intron | 60.0% |
CCCCACCTGACCAACCCAAG+TGG | - | chr5.4:17721761-17721780 | None:intergenic | 65.0% | |
CCGCCGGTCCCTGATTTCTG+TGG | - | chr5.4:17721344-17721363 | None:intergenic | 65.0% | |
CTTCATGCGGCGGCAAGGTC+CGG | + | chr5.4:17721368-17721387 | MS.gene070084:CDS | 65.0% | |
CGGACCTTGCCGCCGCATGA+AGG | - | chr5.4:17721370-17721389 | None:intergenic | 70.0% | |
GACCGGCGGCGACCTTCATG+CGG | + | chr5.4:17721355-17721374 | MS.gene070084:CDS | 70.0% | |
GCGACCTTCATGCGGCGGCA+AGG | + | chr5.4:17721363-17721382 | MS.gene070084:CDS | 70.0% | |
CGCCGCATGAAGGTCGCCGC+CGG | - | chr5.4:17721360-17721379 | None:intergenic | 75.0% | |
CGGCGGCGACCTTCATGCGG+CGG | + | chr5.4:17721358-17721377 | MS.gene070084:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 17721326 | 17723623 | 17721326 | ID=MS.gene070084 |
chr5.4 | mRNA | 17721326 | 17723623 | 17721326 | ID=MS.gene070084.t1;Parent=MS.gene070084 |
chr5.4 | exon | 17721326 | 17721468 | 17721326 | ID=MS.gene070084.t1.exon1;Parent=MS.gene070084.t1 |
chr5.4 | CDS | 17721326 | 17721468 | 17721326 | ID=cds.MS.gene070084.t1;Parent=MS.gene070084.t1 |
chr5.4 | exon | 17722969 | 17723623 | 17722969 | ID=MS.gene070084.t1.exon2;Parent=MS.gene070084.t1 |
chr5.4 | CDS | 17722969 | 17723623 | 17722969 | ID=cds.MS.gene070084.t1;Parent=MS.gene070084.t1 |
Gene Sequence |
Protein sequence |