AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070084


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070084.t1 MTR_5g026800 96.578 263 9 0 1 263 1 263 0.0 514
MS.gene070084.t1 MTR_6g027840 37.600 125 77 1 12 136 365 488 1.06e-16 79.7
MS.gene070084.t1 MTR_5g043640 35.099 151 93 2 15 160 58 208 1.09e-16 77.4
MS.gene070084.t1 MTR_5g043640 32.192 146 98 1 15 160 94 238 4.02e-13 67.8
MS.gene070084.t1 MTR_6g088470 32.164 171 100 5 3 160 8 175 2.16e-15 75.9
MS.gene070084.t1 MTR_3g088410 34.127 126 82 1 15 140 24 148 2.44e-15 72.0
MS.gene070084.t1 MTR_5g022050 31.973 147 97 2 15 159 263 408 1.55e-14 73.2
MS.gene070084.t1 MTR_5g023090 30.657 137 94 1 15 151 297 432 1.32e-13 70.5
MS.gene070084.t1 MTR_1g100797 35.484 124 78 2 9 130 8 131 9.54e-13 68.2
MS.gene070084.t1 MTR_8g056020 31.967 122 82 1 18 139 236 356 5.42e-12 65.5
MS.gene070084.t1 MTR_7g117620 34.756 164 98 5 15 169 120 283 6.25e-12 65.5
MS.gene070084.t1 MTR_4g062100 30.493 223 128 7 8 204 101 322 9.75e-12 65.1
MS.gene070084.t1 MTR_2g048680 29.139 151 104 2 4 152 139 288 1.76e-11 63.5
MS.gene070084.t1 MTR_6g088470 32.258 124 76 3 3 121 8 128 2.30e-11 63.9
MS.gene070084.t1 MTR_0020s0130 35.484 124 78 2 9 130 8 131 4.09e-11 63.2
MS.gene070084.t1 MTR_7g100430 32.886 149 96 4 8 152 154 302 5.01e-11 62.8
MS.gene070084.t1 MTR_4g021880 29.940 167 95 5 15 160 136 301 6.92e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070084.t1 AT4G19150 56.225 249 78 3 14 261 19 237 1.00e-82 248
MS.gene070084.t1 AT4G19150 51.402 214 73 3 49 261 31 214 1.30e-58 186
MS.gene070084.t1 AT5G12320 33.858 127 83 1 14 140 14 139 3.01e-17 76.6
MS.gene070084.t1 AT5G40160 37.008 127 80 0 25 151 165 291 6.04e-17 79.3
MS.gene070084.t1 AT2G03430 34.667 150 94 2 15 160 51 200 2.13e-16 76.6
MS.gene070084.t1 AT2G03430 34.752 141 84 4 37 169 39 179 1.88e-11 62.8
MS.gene070084.t1 AT2G03430 30.968 155 99 2 15 162 87 240 2.80e-11 62.4
MS.gene070084.t1 AT5G66055 34.228 149 91 4 15 159 264 409 2.22e-16 78.6
MS.gene070084.t1 AT3G24530 35.417 144 84 3 15 149 19 162 2.25e-15 75.9
MS.gene070084.t1 AT5G40160 35.398 113 73 0 31 143 171 283 1.02e-13 70.1
MS.gene070084.t1 AT2G31820 35.211 142 89 3 15 153 228 369 2.98e-13 69.7
MS.gene070084.t1 AT1G05640 37.255 153 86 5 8 153 184 333 7.40e-13 68.6
MS.gene070084.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene070084.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene070084.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene070084.t1 AT3G09890 32.692 156 97 2 14 161 42 197 8.52e-12 63.2
MS.gene070084.t1 AT2G28840 33.333 174 80 8 15 160 50 215 9.11e-12 65.1
MS.gene070084.t1 AT5G02620 33.557 149 95 4 8 152 87 235 9.31e-12 65.1
MS.gene070084.t1 AT5G02620 33.557 149 95 4 8 152 87 235 9.31e-12 65.1
MS.gene070084.t1 AT5G53470 32.374 139 56 3 15 151 222 324 1.14e-11 64.3
MS.gene070084.t1 AT5G07270 35.484 124 78 2 9 130 8 131 1.86e-11 64.3
MS.gene070084.t1 AT2G26650 31.081 148 99 2 4 151 544 688 2.27e-11 64.3
MS.gene070084.t1 AT5G60070 34.416 154 88 5 8 152 104 253 2.75e-11 63.9
MS.gene070084.t1 AT5G20350 32.203 177 102 6 15 183 102 268 6.59e-11 62.8
MS.gene070084.t1 AT3G09550 34.667 150 94 4 7 152 173 322 6.85e-11 62.8
MS.gene070084.t1 AT3G09550 34.667 150 94 4 7 152 173 322 6.85e-11 62.8
MS.gene070084.t1 AT3G09550 34.667 150 94 4 7 152 180 329 7.76e-11 62.4
MS.gene070084.t1 AT4G27780 28.873 142 63 3 15 154 237 342 9.92e-11 61.6

Find 72 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTCTTCAGGTGCTTT+TGG 0.220900 5.4:-17723396 None:intergenic
AGTGAGACTTGCCCCTTTCT+TGG 0.248840 5.4:-17723217 None:intergenic
AAACTCTTCACAACCGAAAA+AGG 0.282462 5.4:+17723542 MS.gene070084:CDS
GTCCCTGATTTCTGTGGATT+TGG 0.294656 5.4:-17721335 None:intergenic
CAACCTACAGGGTCTCTTCT+TGG 0.315944 5.4:-17723605 None:intergenic
GCCTTTGGATCAGATTCTTC+AGG 0.317269 5.4:-17723405 None:intergenic
TGCTTCTGCTATGGATGATA+TGG 0.344938 5.4:+17723041 MS.gene070084:CDS
CTTGGACATCATCTGAACTT+TGG 0.372832 5.4:-17723587 None:intergenic
TAATTGAGGATACGGTGTTC+TGG 0.393428 5.4:-17721459 None:intergenic
CTTCATGCGGCGGCAAGGTC+CGG 0.398665 5.4:+17721368 MS.gene070084:CDS
AAACCAAATCCACAGAAATC+AGG 0.401690 5.4:+17721332 MS.gene070084:CDS
TGCTGTTCAAGGTTCCCATC+TGG 0.407073 5.4:+17723176 MS.gene070084:CDS
CCTAAAGAGGATGATGCCTT+TGG 0.430235 5.4:-17723420 None:intergenic
GTCAAGTACTTATCCAAGAA+AGG 0.442200 5.4:+17723204 MS.gene070084:CDS
CCAAAGGCATCATCCTCTTT+AGG 0.445769 5.4:+17723420 MS.gene070084:CDS
CGCCGCATGAAGGTCGCCGC+CGG 0.459979 5.4:-17721357 None:intergenic
TTCACTACTCAAATTACCTT+CGG 0.461363 5.4:-17723445 None:intergenic
GTTCGAACTCTGGTTTCAGC+TGG 0.463456 5.4:+17723105 MS.gene070084:CDS
TGTTCTGGAGTGCTTATCTC+TGG 0.471688 5.4:-17721444 None:intergenic
CTCACTATCAAGACAAAGGC+AGG 0.472180 5.4:+17723234 MS.gene070084:CDS
TCAAGTACTTATCCAAGAAA+GGG 0.475565 5.4:+17723205 MS.gene070084:CDS
TTTAGAAGTTGTTCGAACTC+TGG 0.476082 5.4:+17723095 MS.gene070084:CDS
CCGAGTAGCGGCTTTGAAAG+AGG 0.477525 5.4:-17723130 None:intergenic
TGGTGAGAAAGAGAAGAGGA+AGG 0.484213 5.4:+17723497 MS.gene070084:CDS
CATTGGTAGCAAGATCCAAT+GGG 0.488232 5.4:-17723263 None:intergenic
TTTGAAAAGTCAGCTAAGAA+TGG 0.495928 5.4:+17723312 MS.gene070084:CDS
AAAGGAGCGGACTTCATCAT+TGG 0.515117 5.4:-17723280 None:intergenic
GTGCTTATCTCTGGAATTGA+CGG 0.516931 5.4:-17721435 None:intergenic
GGGTAATGAAGATGATGAAA+GGG 0.517277 5.4:+17723518 MS.gene070084:CDS
TCTTCATCAACAGTAGCTGC+AGG 0.519575 5.4:-17723471 None:intergenic
CCTTGAACAGCAAAATGTAA+TGG 0.521701 5.4:-17723165 None:intergenic
ATTACCTTCGGAGCCTAAAG+AGG 0.537106 5.4:-17723433 None:intergenic
CGGACCTTGCCGCCGCATGA+AGG 0.544030 5.4:-17721367 None:intergenic
GCGACCTTCATGCGGCGGCA+AGG 0.544925 5.4:+17721363 MS.gene070084:CDS
CCTCTTTCAAAGCCGCTACT+CGG 0.546704 5.4:+17723130 MS.gene070084:CDS
AGGGTAATGAAGATGATGAA+AGG 0.548445 5.4:+17723517 MS.gene070084:CDS
TTCAAAGCCGCTACTCGGAA+AGG 0.550795 5.4:+17723135 MS.gene070084:CDS
CATCATCTGAACTTTGGAGA+TGG 0.551884 5.4:-17723581 None:intergenic
TGATGTCGGTGCTTCTGCTA+TGG 0.553962 5.4:+17723032 MS.gene070084:CDS
TCATTGGTAGCAAGATCCAA+TGG 0.558682 5.4:-17723264 None:intergenic
ACCTGAAGAATCTGATCCAA+AGG 0.559801 5.4:+17723404 MS.gene070084:CDS
CATCAGCTTTATTCTTGCAG+AGG 0.562565 5.4:-17723014 None:intergenic
CCGCCGGTCCCTGATTTCTG+TGG 0.567523 5.4:-17721341 None:intergenic
AACCAAATCCACAGAAATCA+GGG 0.569694 5.4:+17721333 MS.gene070084:CDS
CGGCGGCGACCTTCATGCGG+CGG 0.573003 5.4:+17721358 MS.gene070084:CDS
AAAGTGGTGAGAAAGAGAAG+AGG 0.577048 5.4:+17723493 MS.gene070084:CDS
GGTGAGAAAGAGAAGAGGAA+GGG 0.577937 5.4:+17723498 MS.gene070084:CDS
TCATCCTCTTTAGGCTCCGA+AGG 0.581554 5.4:+17723429 MS.gene070084:CDS
GACCGGCGGCGACCTTCATG+CGG 0.583532 5.4:+17721355 MS.gene070084:CDS
AGTACTTGACAAGTTCCAGA+TGG 0.589385 5.4:-17723191 None:intergenic
CTGTGCCGCGAAGTGTATTG+CGG 0.594539 5.4:-17723064 None:intergenic
TATGGCCGCAATACACTTCG+CGG 0.596559 5.4:+17723059 MS.gene070084:CDS
TCTCTGGAATTGACGGCCAG+AGG 0.598799 5.4:-17721428 None:intergenic
ATACACTTCGCGGCACAGAA+AGG 0.600317 5.4:+17723069 MS.gene070084:CDS
CTGAACTGTAATCAGATCAC+CGG 0.610660 5.4:-17721387 None:intergenic
GAAGTCCGCTCCTTTCTAGA+GGG 0.610884 5.4:+17723288 MS.gene070084:CDS
AAAGGCAGGAAAGACCCCAT+TGG 0.612270 5.4:+17723248 MS.gene070084:CDS
AAGAACGAAGATAAAACTGA+AGG 0.613960 5.4:+17723342 MS.gene070084:CDS
AATCCACAGAAATCAGGGAC+CGG 0.618128 5.4:+17721338 MS.gene070084:CDS
TGAAGTCCGCTCCTTTCTAG+AGG 0.622198 5.4:+17723287 MS.gene070084:CDS
CAAGTACTTATCCAAGAAAG+GGG 0.626997 5.4:+17723206 MS.gene070084:CDS
CAAATCCCTCTAGAAAGGAG+CGG 0.629038 5.4:-17723293 None:intergenic
GCTACTGTTGATGAAGAAAG+TGG 0.635967 5.4:+17723477 MS.gene070084:CDS
TGCAAGAATAAAGCTGATGT+CGG 0.636789 5.4:+17723018 MS.gene070084:CDS
GTACTTGACAAGTTCCAGAT+GGG 0.651589 5.4:-17723190 None:intergenic
TCATCAACAGTAGCTGCAGG+AGG 0.660427 5.4:-17723468 None:intergenic
AGTCACGCCTTTCCGAGTAG+CGG 0.663740 5.4:-17723142 None:intergenic
AAGTCTCACTATCAAGACAA+AGG 0.667954 5.4:+17723230 MS.gene070084:CDS
CCACAGAAATCAGGGACCGG+CGG 0.674685 5.4:+17721341 MS.gene070084:CDS
TGTCCAAGAAGAGACCCTGT+AGG 0.707431 5.4:+17723602 MS.gene070084:CDS
TATGCCTCTACCAACCTACA+GGG 0.721432 5.4:-17723616 None:intergenic
ATTGGTAGCAAGATCCAATG+GGG 0.757229 5.4:-17723262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTATATATTTCTTTCTA+AGG + chr5.4:17722176-17722195 MS.gene070084:intron 15.0%
!! ATAATATACAGTAACAAAAT+TGG - chr5.4:17722392-17722411 None:intergenic 15.0%
!! ATTATTGTAAAAATATCTAC+AGG + chr5.4:17722316-17722335 MS.gene070084:intron 15.0%
!! TAATATACAGTAACAAAATT+GGG - chr5.4:17722391-17722410 None:intergenic 15.0%
!! TCAAATAAATTAATCCAAAT+AGG + chr5.4:17722031-17722050 MS.gene070084:intron 15.0%
!!! ACATTACTTTTAAAATATCT+GGG - chr5.4:17722161-17722180 None:intergenic 15.0%
!!! TACATTACTTTTAAAATATC+TGG - chr5.4:17722162-17722181 None:intergenic 15.0%
!! AATATACAGTAACAAAATTG+GGG - chr5.4:17722390-17722409 None:intergenic 20.0%
!! CTTATGTATACTATTGTAAA+AGG + chr5.4:17721617-17721636 MS.gene070084:intron 20.0%
!! GTTTCTTTAACATACATATT+TGG + chr5.4:17722802-17722821 MS.gene070084:intron 20.0%
!! TTAAGGAAGATAATTTAGTT+TGG + chr5.4:17722728-17722747 MS.gene070084:intron 20.0%
!!! ACAAGAAAATTTTAATTCTC+AGG - chr5.4:17722475-17722494 None:intergenic 20.0%
!!! ATTACTTTTAAAATATCTGG+GGG - chr5.4:17722159-17722178 None:intergenic 20.0%
!!! ATTTTACATGATTGTATTCT+GGG + chr5.4:17722694-17722713 MS.gene070084:intron 20.0%
!!! CATTACTTTTAAAATATCTG+GGG - chr5.4:17722160-17722179 None:intergenic 20.0%
! AAAATGAAAATCACACATGA+AGG + chr5.4:17722245-17722264 MS.gene070084:intron 25.0%
! AAATGAAAATCACACATGAA+GGG + chr5.4:17722246-17722265 MS.gene070084:intron 25.0%
! AATATGCATGTTTCTTTCTA+AGG - chr5.4:17722299-17722318 None:intergenic 25.0%
! ATAAGGAAGAATACTTTATC+TGG + chr5.4:17722871-17722890 MS.gene070084:intron 25.0%
! ATATACAGTAACAAAATTGG+GGG - chr5.4:17722389-17722408 None:intergenic 25.0%
! ATCATGTAAAATGTAGTCTA+TGG - chr5.4:17722686-17722705 None:intergenic 25.0%
! CATTAATGATAACCATGTAA+TGG - chr5.4:17722059-17722078 None:intergenic 25.0%
! CATTACATGGTTATCATTAA+TGG + chr5.4:17722057-17722076 MS.gene070084:intron 25.0%
! TAAGGAAGAATACTTTATCT+GGG + chr5.4:17722872-17722891 MS.gene070084:intron 25.0%
! TGAAGAGTTATGAAAATAAG+CGG + chr5.4:17721703-17721722 MS.gene070084:intron 25.0%
! TGTAGTCTATTGTTCAAATT+TGG - chr5.4:17722955-17722974 None:intergenic 25.0%
!! ATTTTAGATGACTGTATTCT+GGG + chr5.4:17722837-17722856 MS.gene070084:intron 25.0%
!! CATTTTACATGATTGTATTC+TGG + chr5.4:17722693-17722712 MS.gene070084:intron 25.0%
!! GAAGTTACTAGATTTTTCTT+TGG + chr5.4:17722616-17722635 MS.gene070084:intron 25.0%
!! GTCATCTAAAATATAGTCTA+TGG - chr5.4:17722829-17722848 None:intergenic 25.0%
!! TTTTACATGATTGTATTCTG+GGG + chr5.4:17722695-17722714 MS.gene070084:intron 25.0%
!!! AATTTTGATTTCAAATCCTC+TGG + chr5.4:17721412-17721431 MS.gene070084:CDS 25.0%
!!! TATTTTAGATGACTGTATTC+TGG + chr5.4:17722836-17722855 MS.gene070084:intron 25.0%
AAGAACGAAGATAAAACTGA+AGG + chr5.4:17723342-17723361 MS.gene070084:CDS 30.0%
AGAGGTTTAAACCAAAAGTT+GGG + chr5.4:17722081-17722100 MS.gene070084:intron 30.0%
AGTTATGACATACAAGAGTT+TGG + chr5.4:17722130-17722149 MS.gene070084:intron 30.0%
ATAAGGAGGAAAACTTTATC+TGG + chr5.4:17722590-17722609 MS.gene070084:intron 30.0%
GATGACATGAAAAAGAGTTA+GGG - chr5.4:17721494-17721513 None:intergenic 30.0%
GTTATGACATACAAGAGTTT+GGG + chr5.4:17722131-17722150 MS.gene070084:intron 30.0%
TAAGGAGGAAAACTTTATCT+GGG + chr5.4:17722591-17722610 MS.gene070084:intron 30.0%
TCAAGTACTTATCCAAGAAA+GGG + chr5.4:17723205-17723224 MS.gene070084:CDS 30.0%
TGATGACATGAAAAAGAGTT+AGG - chr5.4:17721495-17721514 None:intergenic 30.0%
TGGATGTTAAAGAAACAACA+AGG - chr5.4:17722935-17722954 None:intergenic 30.0%
TGGTAAAGTTAGTAGTAACT+GGG + chr5.4:17722748-17722767 MS.gene070084:intron 30.0%
TTCACTACTCAAATTACCTT+CGG - chr5.4:17723448-17723467 None:intergenic 30.0%
TTGGTAAAGTTAGTAGTAAC+TGG + chr5.4:17722747-17722766 MS.gene070084:intron 30.0%
TTTGAAAAGTCAGCTAAGAA+TGG + chr5.4:17723312-17723331 MS.gene070084:CDS 30.0%
! ATGCTATTTATCTGCTTGTT+AGG + chr5.4:17722434-17722453 MS.gene070084:intron 30.0%
! TACATTTAGCTGCATTTTCT+GGG + chr5.4:17722971-17722990 MS.gene070084:CDS 30.0%
! TGCTATTTATCTGCTTGTTA+GGG + chr5.4:17722435-17722454 MS.gene070084:intron 30.0%
! TTCTTCGTTTTCTTTTGGAT+CGG - chr5.4:17723370-17723389 None:intergenic 30.0%
!! TGTGTTCTAGAGAGAAAATA+AGG + chr5.4:17722573-17722592 MS.gene070084:intron 30.0%
!! TTTTTGAAAGCCTAGTCTAA+GGG - chr5.4:17721939-17721958 None:intergenic 30.0%
!!! TTTTTTGAAAGCCTAGTCTA+AGG - chr5.4:17721940-17721959 None:intergenic 30.0%
AAACCAAATCCACAGAAATC+AGG + chr5.4:17721332-17721351 MS.gene070084:CDS 35.0%
AAACTCTTCACAACCGAAAA+AGG + chr5.4:17723542-17723561 MS.gene070084:CDS 35.0%
AAATCACACATGAAGGGATA+TGG + chr5.4:17722252-17722271 MS.gene070084:intron 35.0%
AAATGTAGTCTATGGTCCAA+AGG - chr5.4:17722678-17722697 None:intergenic 35.0%
AACCAAATCCACAGAAATCA+GGG + chr5.4:17721333-17721352 MS.gene070084:CDS 35.0%
AAGGAGGAAAACTTTATCTG+GGG + chr5.4:17722592-17722611 MS.gene070084:intron 35.0%
AAGTCTCACTATCAAGACAA+AGG + chr5.4:17723230-17723249 MS.gene070084:CDS 35.0%
ACCCATTAAAAGCTAAAGCA+AGG - chr5.4:17721872-17721891 None:intergenic 35.0%
AGGGTAATGAAGATGATGAA+AGG + chr5.4:17723517-17723536 MS.gene070084:CDS 35.0%
ATGGTTATCATTAATGGCAG+AGG + chr5.4:17722063-17722082 MS.gene070084:intron 35.0%
ATTGAACCCCTCGAATTAAT+CGG + chr5.4:17721913-17721932 MS.gene070084:intron 35.0%
CAAGTACTTATCCAAGAAAG+GGG + chr5.4:17723206-17723225 MS.gene070084:CDS 35.0%
CAGAGGTTTAAACCAAAAGT+TGG + chr5.4:17722080-17722099 MS.gene070084:intron 35.0%
CCTTGAACAGCAAAATGTAA+TGG - chr5.4:17723168-17723187 None:intergenic 35.0%
GACTGTATTCTGGGTATATT+GGG + chr5.4:17722846-17722865 MS.gene070084:intron 35.0%
GAGGTTTAAACCAAAAGTTG+GGG + chr5.4:17722082-17722101 MS.gene070084:intron 35.0%
GCACATCTTAGTTATGACAT+AGG - chr5.4:17722354-17722373 None:intergenic 35.0%
GGGTAATGAAGATGATGAAA+GGG + chr5.4:17723518-17723537 MS.gene070084:CDS 35.0%
GTCAAGTACTTATCCAAGAA+AGG + chr5.4:17723204-17723223 MS.gene070084:CDS 35.0%
GTTTCTTCAACAATCACCTT+TGG + chr5.4:17722659-17722678 MS.gene070084:intron 35.0%
TAAGCTGCAAATAAGCGTTA+GGG - chr5.4:17721570-17721589 None:intergenic 35.0%
TCATAACTAAGATGTGCCAT+TGG + chr5.4:17722357-17722376 MS.gene070084:intron 35.0%
TCTGGGGAAAATTGGAATTA+AGG + chr5.4:17722711-17722730 MS.gene070084:intron 35.0%
TCTGGGTATATTGGGAAATA+AGG + chr5.4:17722854-17722873 MS.gene070084:intron 35.0%
TGACTGTATTCTGGGTATAT+TGG + chr5.4:17722845-17722864 MS.gene070084:intron 35.0%
TGCAAGAATAAAGCTGATGT+CGG + chr5.4:17723018-17723037 MS.gene070084:CDS 35.0%
TTTAGAAGTTGTTCGAACTC+TGG + chr5.4:17723095-17723114 MS.gene070084:CDS 35.0%
! CGAAGTAACTGAGTTTTTCT+TGG + chr5.4:17722895-17722914 MS.gene070084:intron 35.0%
! CTACATTTAGCTGCATTTTC+TGG + chr5.4:17722970-17722989 MS.gene070084:CDS 35.0%
! GATTGTATTCTGGGGAAAAT+TGG + chr5.4:17722703-17722722 MS.gene070084:intron 35.0%
! TCGGATTCTTCGTTTTCTTT+TGG - chr5.4:17723375-17723394 None:intergenic 35.0%
! TTTTTGCTCCATGTTTAAGG+TGG - chr5.4:17722220-17722239 None:intergenic 35.0%
!! ATGGACTAGTCTATCGAAAT+TGG - chr5.4:17721843-17721862 None:intergenic 35.0%
!! CTTTTCAAATCCCTCTAGAA+AGG - chr5.4:17723301-17723320 None:intergenic 35.0%
!! GTTCTAGAGAGAAAATAAGG+AGG + chr5.4:17722576-17722595 MS.gene070084:intron 35.0%
!! TGCGTTGATAATTGAGGATA+CGG - chr5.4:17721470-17721489 None:intergenic 35.0%
!! TGCTTTTTGCTCCATGTTTA+AGG - chr5.4:17722223-17722242 None:intergenic 35.0%
!!! AGCCTTGCTTTAGCTTTTAA+TGG + chr5.4:17721867-17721886 MS.gene070084:intron 35.0%
!!! CCATTACATTTTGCTGTTCA+AGG + chr5.4:17723165-17723184 MS.gene070084:CDS 35.0%
!!! GCCTTGCTTTAGCTTTTAAT+GGG + chr5.4:17721868-17721887 MS.gene070084:intron 35.0%
AAAGTGGTGAGAAAGAGAAG+AGG + chr5.4:17723493-17723512 MS.gene070084:CDS 40.0%
AAATTGGGGGTGATAACCAA+TGG - chr5.4:17722376-17722395 None:intergenic 40.0%
AATTAATCGGCCCTTAGACT+AGG + chr5.4:17721926-17721945 MS.gene070084:intron 40.0%
ACCATGTAATGGTGCCTATT+TGG - chr5.4:17722048-17722067 None:intergenic 40.0%
ACCTGAAGAATCTGATCCAA+AGG + chr5.4:17723404-17723423 MS.gene070084:CDS 40.0%
AGTACTTGACAAGTTCCAGA+TGG - chr5.4:17723194-17723213 None:intergenic 40.0%
AGTAGTAACTGGGTTTCACT+TGG + chr5.4:17722758-17722777 MS.gene070084:intron 40.0%
AGTTATGACATAGGAGAGCT+AGG - chr5.4:17722345-17722364 None:intergenic 40.0%
CTGAACTGTAATCAGATCAC+CGG - chr5.4:17721390-17721409 None:intergenic 40.0%
CTTCTGCATGTATGTGTCTA+TGG + chr5.4:17722521-17722540 MS.gene070084:intron 40.0%
CTTGGACATCATCTGAACTT+TGG - chr5.4:17723590-17723609 None:intergenic 40.0%
GTAAGCTGCAAATAAGCGTT+AGG - chr5.4:17721571-17721590 None:intergenic 40.0%
GTACTTGACAAGTTCCAGAT+GGG - chr5.4:17723193-17723212 None:intergenic 40.0%
GTAGTAACTGGGTTTCACTT+GGG + chr5.4:17722759-17722778 MS.gene070084:intron 40.0%
GTTATGACATAGGAGAGCTA+GGG - chr5.4:17722344-17722363 None:intergenic 40.0%
TAATTGAGGATACGGTGTTC+TGG - chr5.4:17721462-17721481 None:intergenic 40.0%
TCCAAATAGGCACCATTACA+TGG + chr5.4:17722044-17722063 MS.gene070084:intron 40.0%
TGCTTCTGCTATGGATGATA+TGG + chr5.4:17723041-17723060 MS.gene070084:CDS 40.0%
TTAAACCAAAAGTTGGGGCA+TGG + chr5.4:17722087-17722106 MS.gene070084:intron 40.0%
! ATTGGTAGCAAGATCCAATG+GGG - chr5.4:17723265-17723284 None:intergenic 40.0%
! CATCATCTGAACTTTGGAGA+TGG - chr5.4:17723584-17723603 None:intergenic 40.0%
! CATTGGTAGCAAGATCCAAT+GGG - chr5.4:17723266-17723285 None:intergenic 40.0%
! GCTACTGTTGATGAAGAAAG+TGG + chr5.4:17723477-17723496 MS.gene070084:CDS 40.0%
! TCAGATTCTTCAGGTGCTTT+TGG - chr5.4:17723399-17723418 None:intergenic 40.0%
! TCATTGGTAGCAAGATCCAA+TGG - chr5.4:17723267-17723286 None:intergenic 40.0%
! TTCTTCAGGTGCTTTTGGAT+CGG - chr5.4:17723394-17723413 None:intergenic 40.0%
! TTTAATGGGTCTCTTGCAAG+TGG + chr5.4:17721882-17721901 MS.gene070084:intron 40.0%
!! CATCAGCTTTATTCTTGCAG+AGG - chr5.4:17723017-17723036 None:intergenic 40.0%
!! GTGCTTATCTCTGGAATTGA+CGG - chr5.4:17721438-17721457 None:intergenic 40.0%
!! TAGGGTTGCGTTGATAATTG+AGG - chr5.4:17721476-17721495 None:intergenic 40.0%
AATCCACAGAAATCAGGGAC+CGG + chr5.4:17721338-17721357 MS.gene070084:CDS 45.0%
AGCTAAAGCAAGGCTCTGTA+TGG - chr5.4:17721862-17721881 None:intergenic 45.0%
ATAAGCTAACCCACTTGGGT+TGG + chr5.4:17721748-17721767 MS.gene070084:intron 45.0%
ATCGAACCTAAGACCTTGAG+AGG - chr5.4:17721809-17721828 None:intergenic 45.0%
ATGCCATAAGCTAACCCACT+TGG + chr5.4:17721743-17721762 MS.gene070084:intron 45.0%
ATTACCTTCGGAGCCTAAAG+AGG - chr5.4:17723436-17723455 None:intergenic 45.0%
CCTAAAGAGGATGATGCCTT+TGG - chr5.4:17723423-17723442 None:intergenic 45.0%
CTAAGGGCCGATTAATTCGA+GGG - chr5.4:17721923-17721942 None:intergenic 45.0%
CTCACTATCAAGACAAAGGC+AGG + chr5.4:17723234-17723253 MS.gene070084:CDS 45.0%
GCCTTTGGATCAGATTCTTC+AGG - chr5.4:17723408-17723427 None:intergenic 45.0%
GGTGAGAAAGAGAAGAGGAA+GGG + chr5.4:17723498-17723517 MS.gene070084:CDS 45.0%
GTCCCTGATTTCTGTGGATT+TGG - chr5.4:17721338-17721357 None:intergenic 45.0%
GTCTTAGGTTCGATTACCTC+TGG + chr5.4:17721815-17721834 MS.gene070084:intron 45.0%
TAAGGGCCGATTAATTCGAG+GGG - chr5.4:17721922-17721941 None:intergenic 45.0%
TCTAAGGGCCGATTAATTCG+AGG - chr5.4:17721924-17721943 None:intergenic 45.0%
TCTATCGAAATTGGCACCAG+AGG - chr5.4:17721834-17721853 None:intergenic 45.0%
TCTTCATCAACAGTAGCTGC+AGG - chr5.4:17723474-17723493 None:intergenic 45.0%
TGCCATAAGCTAACCCACTT+GGG + chr5.4:17721744-17721763 MS.gene070084:intron 45.0%
TGGTGAGAAAGAGAAGAGGA+AGG + chr5.4:17723497-17723516 MS.gene070084:CDS 45.0%
! AAAGGAGCGGACTTCATCAT+TGG - chr5.4:17723283-17723302 None:intergenic 45.0%
! AGCTGAACTCTCGCCTTTTT+CGG - chr5.4:17723558-17723577 None:intergenic 45.0%
! CAAATCCCTCTAGAAAGGAG+CGG - chr5.4:17723296-17723315 None:intergenic 45.0%
! TGCTCCATGTTTAAGGTGGT+GGG - chr5.4:17722216-17722235 None:intergenic 45.0%
! TTGCTCCATGTTTAAGGTGG+TGG - chr5.4:17722217-17722236 None:intergenic 45.0%
!! AACCCAAGTGGGTTAGCTTA+TGG - chr5.4:17721749-17721768 None:intergenic 45.0%
!! CCAAAGGCATCATCCTCTTT+AGG + chr5.4:17723420-17723439 MS.gene070084:CDS 45.0%
!! TGTTCTGGAGTGCTTATCTC+TGG - chr5.4:17721447-17721466 None:intergenic 45.0%
AAAGGCAGGAAAGACCCCAT+TGG + chr5.4:17723248-17723267 MS.gene070084:CDS 50.0%
AACCAAAAGTTGGGGCATGG+AGG + chr5.4:17722090-17722109 MS.gene070084:intron 50.0%
AGTGAGACTTGCCCCTTTCT+TGG - chr5.4:17723220-17723239 None:intergenic 50.0%
ATACACTTCGCGGCACAGAA+AGG + chr5.4:17723069-17723088 MS.gene070084:CDS 50.0%
ATGGGTCTCTTGCAAGTGGA+CGG + chr5.4:17721886-17721905 MS.gene070084:intron 50.0%
CCTCTTTCAAAGCCGCTACT+CGG + chr5.4:17723130-17723149 MS.gene070084:CDS 50.0%
GAAGTCCGCTCCTTTCTAGA+GGG + chr5.4:17723288-17723307 MS.gene070084:CDS 50.0%
TATGGCCGCAATACACTTCG+CGG + chr5.4:17723059-17723078 MS.gene070084:CDS 50.0%
TCATCAACAGTAGCTGCAGG+AGG - chr5.4:17723471-17723490 None:intergenic 50.0%
TCATCCTCTTTAGGCTCCGA+AGG + chr5.4:17723429-17723448 MS.gene070084:CDS 50.0%
TGAAGTCCGCTCCTTTCTAG+AGG + chr5.4:17723287-17723306 MS.gene070084:CDS 50.0%
TGCTGTTCAAGGTTCCCATC+TGG + chr5.4:17723176-17723195 MS.gene070084:CDS 50.0%
TGTGGTCCTCTCAAGGTCTT+AGG + chr5.4:17721800-17721819 MS.gene070084:intron 50.0%
TTCAAAGCCGCTACTCGGAA+AGG + chr5.4:17723135-17723154 MS.gene070084:CDS 50.0%
! ATCCTCCATGCCCCAACTTT+TGG - chr5.4:17722095-17722114 None:intergenic 50.0%
! CTCCATGTTTAAGGTGGTGG+GGG - chr5.4:17722214-17722233 None:intergenic 50.0%
! GCTCCATGTTTAAGGTGGTG+GGG - chr5.4:17722215-17722234 None:intergenic 50.0%
! GTTCGAACTCTGGTTTCAGC+TGG + chr5.4:17723105-17723124 MS.gene070084:CDS 50.0%
! TGATGTCGGTGCTTCTGCTA+TGG + chr5.4:17723032-17723051 MS.gene070084:CDS 50.0%
! TGGTTTGGGATCTAGGAGTG+TGG + chr5.4:17721782-17721801 MS.gene070084:intron 50.0%
!! GAAGGGATATGGTGTTGTGC+TGG + chr5.4:17722263-17722282 MS.gene070084:intron 50.0%
AGTCACGCCTTTCCGAGTAG+CGG - chr5.4:17723145-17723164 None:intergenic 55.0%
CACCCCCACCACCTTAAACA+TGG + chr5.4:17722209-17722228 MS.gene070084:intron 55.0%
CTGTGCCGCGAAGTGTATTG+CGG - chr5.4:17723067-17723086 None:intergenic 55.0%
GTCTCTTGCAAGTGGACGGT+GGG + chr5.4:17721890-17721909 MS.gene070084:intron 55.0%
! CTAGGAGTGTGGTCCTCTCA+AGG + chr5.4:17721793-17721812 MS.gene070084:intron 55.0%
!! CCGAGTAGCGGCTTTGAAAG+AGG - chr5.4:17723133-17723152 None:intergenic 55.0%
!! CTAACCCACTTGGGTTGGTC+AGG + chr5.4:17721753-17721772 MS.gene070084:intron 55.0%
!! GTGGGGTTGGTTTGGGATCT+AGG + chr5.4:17721775-17721794 MS.gene070084:intron 55.0%
!! TCTCTGGAATTGACGGCCAG+AGG - chr5.4:17721431-17721450 None:intergenic 55.0%
!! TGGTCAGGTGGGGTTGGTTT+GGG + chr5.4:17721768-17721787 MS.gene070084:intron 55.0%
!! TTGGTCAGGTGGGGTTGGTT+TGG + chr5.4:17721767-17721786 MS.gene070084:intron 55.0%
CCACAGAAATCAGGGACCGG+CGG + chr5.4:17721341-17721360 MS.gene070084:CDS 60.0%
CCCACCTGACCAACCCAAGT+GGG - chr5.4:17721760-17721779 None:intergenic 60.0%
GGTCTCTTGCAAGTGGACGG+TGG + chr5.4:17721889-17721908 MS.gene070084:intron 60.0%
!! ACCCACTTGGGTTGGTCAGG+TGG + chr5.4:17721756-17721775 MS.gene070084:intron 60.0%
!! CCACTTGGGTTGGTCAGGTG+GGG + chr5.4:17721758-17721777 MS.gene070084:intron 60.0%
!! CCCACTTGGGTTGGTCAGGT+GGG + chr5.4:17721757-17721776 MS.gene070084:intron 60.0%
!! TTGGGTTGGTCAGGTGGGGT+TGG + chr5.4:17721762-17721781 MS.gene070084:intron 60.0%
CCCCACCTGACCAACCCAAG+TGG - chr5.4:17721761-17721780 None:intergenic 65.0%
CCGCCGGTCCCTGATTTCTG+TGG - chr5.4:17721344-17721363 None:intergenic 65.0%
CTTCATGCGGCGGCAAGGTC+CGG + chr5.4:17721368-17721387 MS.gene070084:CDS 65.0%
CGGACCTTGCCGCCGCATGA+AGG - chr5.4:17721370-17721389 None:intergenic 70.0%
GACCGGCGGCGACCTTCATG+CGG + chr5.4:17721355-17721374 MS.gene070084:CDS 70.0%
GCGACCTTCATGCGGCGGCA+AGG + chr5.4:17721363-17721382 MS.gene070084:CDS 70.0%
CGCCGCATGAAGGTCGCCGC+CGG - chr5.4:17721360-17721379 None:intergenic 75.0%
CGGCGGCGACCTTCATGCGG+CGG + chr5.4:17721358-17721377 MS.gene070084:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 17721326 17723623 17721326 ID=MS.gene070084
chr5.4 mRNA 17721326 17723623 17721326 ID=MS.gene070084.t1;Parent=MS.gene070084
chr5.4 exon 17721326 17721468 17721326 ID=MS.gene070084.t1.exon1;Parent=MS.gene070084.t1
chr5.4 CDS 17721326 17721468 17721326 ID=cds.MS.gene070084.t1;Parent=MS.gene070084.t1
chr5.4 exon 17722969 17723623 17722969 ID=MS.gene070084.t1.exon2;Parent=MS.gene070084.t1
chr5.4 CDS 17722969 17723623 17722969 ID=cds.MS.gene070084.t1;Parent=MS.gene070084.t1
Gene Sequence

>MS.gene070084

ATGGGTAAACCAAATCCACAGAAATCAGGGACCGGCGGCGACCTTCATGCGGCGGCAAGGTCCGGTGATCTGATTACAGTTCAGTCAATTTTGATTTCAAATCCTCTGGCCGTCAATTCCAGAGATAAGCACTCCAGAACACCGTATCCTCAATTATCAACGCAACCCTAACTCTTTTTCATGTCATCATTCATTCAATTTATTTCATTAGCTTTTATGTCTTTTCGTGTCATGAATGCAACCCTAACGCTTATTTGCAGCTTACAGCACAAGCGCTGATCATTTTAAATGCTTATGTATACTATTGTAAAAGGTAAAATTCAGTTTAAATTGTTTTTGTATAAGTTGTAAGTTGTTTTCGTATAAGCGCTTATCTTTGAAGAGTTATGAAAATAAGCGGAAAATAGCTTATGAATAATGCCATAAGCTAACCCACTTGGGTTGGTCAGGTGGGGTTGGTTTGGGATCTAGGAGTGTGGTCCTCTCAAGGTCTTAGGTTCGATTACCTCTGGTGCCAATTTCGATAGACTAGTCCATACAGAGCCTTGCTTTAGCTTTTAATGGGTCTCTTGCAAGTGGACGGTGGGATTGAACCCCTCGAATTAATCGGCCCTTAGACTAGGCTTTCAAAAAAAGAACAATGTCATAAGCTATTTTCATAAATTCTCTCAAACAGTCTCACAAAACTTATGTCTGTTGATAAACTCAAATAAATTAATCCAAATAGGCACCATTACATGGTTATCATTAATGGCAGAGGTTTAAACCAAAAGTTGGGGCATGGAGGATCTAATCTTAGTTATGAGTTATGACATACAAGAGTTTGGGCTCCCCCAGATATTTTAAAAGTAATGTATATATTTCTTTCTAAGGTAGTTGAGTTCACCCCCACCACCTTAAACATGGAGCAAAAAGCAAGAAAATGAAAATCACACATGAAGGGATATGGTGTTGTGCTGGTATAAATATACCTTAGAAAGAAACATGCATATTATTGTAAAAATATCTACAGGAACCCTAGCTCTCCTATGTCATAACTAAGATGTGCCATTGGTTATCACCCCCAATTTTGTTACTGTATATTATTCTCTCATTGTACTGAACTGAAATGCTATTTATCTGCTTGTTAGGGTATGCTTGCATGATCCTGAGAATTAAAATTTTCTTGTAGATATGAGTTGTGCTTCATGTTTTGCTTCTGCATGTATGTGTCTATGGATAGTTGACTATTTATTCAGTTACATGATTGTGTTCTAGAGAGAAAATAAGGAGGAAAACTTTATCTGGGGTGAAGTTACTAGATTTTTCTTTGGAATTTTAGCATTGCAATACTGTTTCTTCAACAATCACCTTTGGACCATAGACTACATTTTACATGATTGTATTCTGGGGAAAATTGGAATTAAGGAAGATAATTTAGTTTGGTAAAGTTAGTAGTAACTGGGTTTCACTTGGGAATTCTAGCATTGTCATATTGTTTCTTTAACATACATATTTGGACCATAGACTATATTTTAGATGACTGTATTCTGGGTATATTGGGAAATAAGGAAGAATACTTTATCTGGGCGAAGTAACTGAGTTTTTCTTGGTAATTCTAGCATTGCCTTGTTGTTTCTTTAACATCCAAATTTGAACAATAGACTACATTTAGCTGCATTTTCTGGGCAAACAGAAGTAGTCAGTTACCTCTGCAAGAATAAAGCTGATGTCGGTGCTTCTGCTATGGATGATATGGCCGCAATACACTTCGCGGCACAGAAAGGACATTTAGAAGTTGTTCGAACTCTGGTTTCAGCTGGTGCCTCTTTCAAAGCCGCTACTCGGAAAGGCGTGACTCCATTACATTTTGCTGTTCAAGGTTCCCATCTGGAACTTGTCAAGTACTTATCCAAGAAAGGGGCAAGTCTCACTATCAAGACAAAGGCAGGAAAGACCCCATTGGATCTTGCTACCAATGATGAAGTCCGCTCCTTTCTAGAGGGATTTGAAAAGTCAGCTAAGAATGGAGAGTCAAAGAACGAAGATAAAACTGAAGGTTCCGATCCAAAAGAAAACGAAGAATCCGATCCAAAAGCACCTGAAGAATCTGATCCAAAGGCATCATCCTCTTTAGGCTCCGAAGGTAATTTGAGTAGTGAACCTCCTGCAGCTACTGTTGATGAAGAAAGTGGTGAGAAAGAGAAGAGGAAGGGTAATGAAGATGATGAAAGGGAAAACTCTTCACAACCGAAAAAGGCGAGAGTTCAGCTAAGCCATCTCCAAAGTTCAGATGATGTCCAAGAAGAGACCCTGTAG

Protein sequence

>MS.gene070084.t1

MGKPNPQKSGTGGDLHAAARSGDLITVQSILISNPLAVNSRDKHSRTPLHLAAFSGQTEVVSYLCKNKADVGASAMDDMAAIHFAAQKGHLEVVRTLVSAGASFKAATRKGVTPLHFAVQGSHLELVKYLSKKGASLTIKTKAGKTPLDLATNDEVRSFLEGFEKSAKNGESKNEDKTEGSDPKENEESDPKAPEESDPKASSSLGSEGNLSSEPPAATVDEESGEKEKRKGNEDDERENSSQPKKARVQLSHLQSSDDVQEETL