AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028078


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028078.t1 MTR_5g026800 96.578 263 9 0 1 263 1 263 0.0 514
MS.gene028078.t1 MTR_6g027840 37.600 125 77 1 12 136 365 488 1.06e-16 79.7
MS.gene028078.t1 MTR_5g043640 35.099 151 93 2 15 160 58 208 1.09e-16 77.4
MS.gene028078.t1 MTR_5g043640 32.192 146 98 1 15 160 94 238 4.02e-13 67.8
MS.gene028078.t1 MTR_6g088470 32.164 171 100 5 3 160 8 175 2.16e-15 75.9
MS.gene028078.t1 MTR_3g088410 34.127 126 82 1 15 140 24 148 2.44e-15 72.0
MS.gene028078.t1 MTR_5g022050 31.973 147 97 2 15 159 263 408 1.55e-14 73.2
MS.gene028078.t1 MTR_5g023090 30.657 137 94 1 15 151 297 432 1.32e-13 70.5
MS.gene028078.t1 MTR_1g100797 35.484 124 78 2 9 130 8 131 9.54e-13 68.2
MS.gene028078.t1 MTR_8g056020 31.967 122 82 1 18 139 236 356 5.42e-12 65.5
MS.gene028078.t1 MTR_7g117620 34.756 164 98 5 15 169 120 283 6.25e-12 65.5
MS.gene028078.t1 MTR_4g062100 30.493 223 128 7 8 204 101 322 9.75e-12 65.1
MS.gene028078.t1 MTR_2g048680 29.139 151 104 2 4 152 139 288 1.76e-11 63.5
MS.gene028078.t1 MTR_6g088470 32.258 124 76 3 3 121 8 128 2.30e-11 63.9
MS.gene028078.t1 MTR_0020s0130 35.484 124 78 2 9 130 8 131 4.09e-11 63.2
MS.gene028078.t1 MTR_7g100430 32.886 149 96 4 8 152 154 302 5.01e-11 62.8
MS.gene028078.t1 MTR_4g021880 29.940 167 95 5 15 160 136 301 6.92e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028078.t1 AT4G19150 56.225 249 78 3 14 261 19 237 1.00e-82 248
MS.gene028078.t1 AT4G19150 51.402 214 73 3 49 261 31 214 1.30e-58 186
MS.gene028078.t1 AT5G12320 33.858 127 83 1 14 140 14 139 3.01e-17 76.6
MS.gene028078.t1 AT5G40160 37.008 127 80 0 25 151 165 291 6.04e-17 79.3
MS.gene028078.t1 AT2G03430 34.667 150 94 2 15 160 51 200 2.13e-16 76.6
MS.gene028078.t1 AT2G03430 34.752 141 84 4 37 169 39 179 1.88e-11 62.8
MS.gene028078.t1 AT2G03430 30.968 155 99 2 15 162 87 240 2.80e-11 62.4
MS.gene028078.t1 AT5G66055 34.228 149 91 4 15 159 264 409 2.22e-16 78.6
MS.gene028078.t1 AT3G24530 35.417 144 84 3 15 149 19 162 2.25e-15 75.9
MS.gene028078.t1 AT5G40160 35.398 113 73 0 31 143 171 283 1.02e-13 70.1
MS.gene028078.t1 AT2G31820 35.211 142 89 3 15 153 228 369 2.98e-13 69.7
MS.gene028078.t1 AT1G05640 37.255 153 86 5 8 153 184 333 7.40e-13 68.6
MS.gene028078.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene028078.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene028078.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene028078.t1 AT3G09890 32.692 156 97 2 14 161 42 197 8.52e-12 63.2
MS.gene028078.t1 AT2G28840 33.333 174 80 8 15 160 50 215 9.11e-12 65.1
MS.gene028078.t1 AT5G02620 33.557 149 95 4 8 152 87 235 9.31e-12 65.1
MS.gene028078.t1 AT5G02620 33.557 149 95 4 8 152 87 235 9.31e-12 65.1
MS.gene028078.t1 AT5G53470 32.374 139 56 3 15 151 222 324 1.14e-11 64.3
MS.gene028078.t1 AT5G07270 35.484 124 78 2 9 130 8 131 1.86e-11 64.3
MS.gene028078.t1 AT2G26650 31.081 148 99 2 4 151 544 688 2.27e-11 64.3
MS.gene028078.t1 AT5G60070 34.416 154 88 5 8 152 104 253 2.75e-11 63.9
MS.gene028078.t1 AT5G20350 32.203 177 102 6 15 183 102 268 6.59e-11 62.8
MS.gene028078.t1 AT3G09550 34.667 150 94 4 7 152 173 322 6.85e-11 62.8
MS.gene028078.t1 AT3G09550 34.667 150 94 4 7 152 173 322 6.85e-11 62.8
MS.gene028078.t1 AT3G09550 34.667 150 94 4 7 152 180 329 7.76e-11 62.4
MS.gene028078.t1 AT4G27780 28.873 142 63 3 15 154 237 342 9.92e-11 61.6

Find 72 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTCTTCAGGTGCTTT+TGG 0.220900 5.3:-16605240 None:intergenic
AGTGAGACTTGCCCCTTTCT+TGG 0.248840 5.3:-16605061 None:intergenic
AAACTCTTCACAACCGAAAA+AGG 0.282462 5.3:+16605386 MS.gene028078:CDS
GTCCCTGATTTCTGTGGATT+TGG 0.294656 5.3:-16603179 None:intergenic
CAACCTACAGGGTCTCTTCT+TGG 0.315944 5.3:-16605449 None:intergenic
GCCTTTGGATCAGATTCTTC+AGG 0.317269 5.3:-16605249 None:intergenic
TGCTTCTGCTATGGATGATA+TGG 0.344938 5.3:+16604885 MS.gene028078:CDS
CTTGGACATCATCTGAACTT+TGG 0.372832 5.3:-16605431 None:intergenic
TAATTGAGGATACGGTGTTC+TGG 0.393428 5.3:-16603303 None:intergenic
CTTCATGCGGCGGCAAGGTC+CGG 0.398665 5.3:+16603212 MS.gene028078:CDS
AAACCAAATCCACAGAAATC+AGG 0.401690 5.3:+16603176 MS.gene028078:CDS
TGCTGTTCAAGGTTCCCATC+TGG 0.407073 5.3:+16605020 MS.gene028078:CDS
CCTAAAGAGGATGATGCCTT+TGG 0.430235 5.3:-16605264 None:intergenic
GTCAAGTACTTATCCAAGAA+AGG 0.442200 5.3:+16605048 MS.gene028078:CDS
CCAAAGGCATCATCCTCTTT+AGG 0.445769 5.3:+16605264 MS.gene028078:CDS
CGCCGCATGAAGGTCGCCGC+CGG 0.459979 5.3:-16603201 None:intergenic
TTCACTACTCAAATTACCTT+CGG 0.461363 5.3:-16605289 None:intergenic
GTTCGAACTCTGGTTTCAGC+TGG 0.463456 5.3:+16604949 MS.gene028078:CDS
TGTTCTGGAGTGCTTATCTC+TGG 0.471688 5.3:-16603288 None:intergenic
CTCACTATCAAGACAAAGGC+AGG 0.472180 5.3:+16605078 MS.gene028078:CDS
TCAAGTACTTATCCAAGAAA+GGG 0.475565 5.3:+16605049 MS.gene028078:CDS
TTTAGAAGTTGTTCGAACTC+TGG 0.476082 5.3:+16604939 MS.gene028078:CDS
CCGAGTAGCGGCTTTGAAAG+AGG 0.477525 5.3:-16604974 None:intergenic
TGGTGAGAAAGAGAAGAGGA+AGG 0.484213 5.3:+16605341 MS.gene028078:CDS
CATTGGTAGCAAGATCCAAT+GGG 0.488232 5.3:-16605107 None:intergenic
TTTGAAAAGTCAGCTAAGAA+TGG 0.495928 5.3:+16605156 MS.gene028078:CDS
AAAGGAGCGGACTTCATCAT+TGG 0.515117 5.3:-16605124 None:intergenic
GTGCTTATCTCTGGAATTGA+CGG 0.516931 5.3:-16603279 None:intergenic
GGGTAATGAAGATGATGAAA+GGG 0.517277 5.3:+16605362 MS.gene028078:CDS
TCTTCATCAACAGTAGCTGC+AGG 0.519575 5.3:-16605315 None:intergenic
CCTTGAACAGCAAAATGTAA+TGG 0.521701 5.3:-16605009 None:intergenic
ATTACCTTCGGAGCCTAAAG+AGG 0.537106 5.3:-16605277 None:intergenic
CGGACCTTGCCGCCGCATGA+AGG 0.544030 5.3:-16603211 None:intergenic
GCGACCTTCATGCGGCGGCA+AGG 0.544925 5.3:+16603207 MS.gene028078:CDS
CCTCTTTCAAAGCCGCTACT+CGG 0.546704 5.3:+16604974 MS.gene028078:CDS
AGGGTAATGAAGATGATGAA+AGG 0.548445 5.3:+16605361 MS.gene028078:CDS
TTCAAAGCCGCTACTCGGAA+AGG 0.550795 5.3:+16604979 MS.gene028078:CDS
CATCATCTGAACTTTGGAGA+TGG 0.551884 5.3:-16605425 None:intergenic
TGATGTCGGTGCTTCTGCTA+TGG 0.553962 5.3:+16604876 MS.gene028078:CDS
TCATTGGTAGCAAGATCCAA+TGG 0.558682 5.3:-16605108 None:intergenic
ACCTGAAGAATCTGATCCAA+AGG 0.559801 5.3:+16605248 MS.gene028078:CDS
CATCAGCTTTATTCTTGCAG+AGG 0.562565 5.3:-16604858 None:intergenic
CCGCCGGTCCCTGATTTCTG+TGG 0.567523 5.3:-16603185 None:intergenic
AACCAAATCCACAGAAATCA+GGG 0.569694 5.3:+16603177 MS.gene028078:CDS
CGGCGGCGACCTTCATGCGG+CGG 0.573003 5.3:+16603202 MS.gene028078:CDS
AAAGTGGTGAGAAAGAGAAG+AGG 0.577048 5.3:+16605337 MS.gene028078:CDS
GGTGAGAAAGAGAAGAGGAA+GGG 0.577937 5.3:+16605342 MS.gene028078:CDS
TCATCCTCTTTAGGCTCCGA+AGG 0.581554 5.3:+16605273 MS.gene028078:CDS
GACCGGCGGCGACCTTCATG+CGG 0.583532 5.3:+16603199 MS.gene028078:CDS
AGTACTTGACAAGTTCCAGA+TGG 0.589385 5.3:-16605035 None:intergenic
CTGTGCCGCGAAGTGTATTG+CGG 0.594539 5.3:-16604908 None:intergenic
TATGGCCGCAATACACTTCG+CGG 0.596559 5.3:+16604903 MS.gene028078:CDS
TCTCTGGAATTGACGGCCAG+AGG 0.598799 5.3:-16603272 None:intergenic
ATACACTTCGCGGCACAGAA+AGG 0.600317 5.3:+16604913 MS.gene028078:CDS
CTGAACTGTAATCAGATCAC+CGG 0.610660 5.3:-16603231 None:intergenic
GAAGTCCGCTCCTTTCTAGA+GGG 0.610884 5.3:+16605132 MS.gene028078:CDS
AAAGGCAGGAAAGACCCCAT+TGG 0.612270 5.3:+16605092 MS.gene028078:CDS
AAGAACGAAGATAAAACTGA+AGG 0.613960 5.3:+16605186 MS.gene028078:CDS
AATCCACAGAAATCAGGGAC+CGG 0.618128 5.3:+16603182 MS.gene028078:CDS
TGAAGTCCGCTCCTTTCTAG+AGG 0.622198 5.3:+16605131 MS.gene028078:CDS
CAAGTACTTATCCAAGAAAG+GGG 0.626997 5.3:+16605050 MS.gene028078:CDS
CAAATCCCTCTAGAAAGGAG+CGG 0.629038 5.3:-16605137 None:intergenic
GCTACTGTTGATGAAGAAAG+TGG 0.635967 5.3:+16605321 MS.gene028078:CDS
TGCAAGAATAAAGCTGATGT+CGG 0.636789 5.3:+16604862 MS.gene028078:CDS
GTACTTGACAAGTTCCAGAT+GGG 0.651589 5.3:-16605034 None:intergenic
TCATCAACAGTAGCTGCAGG+AGG 0.660427 5.3:-16605312 None:intergenic
AGTCACGCCTTTCCGAGTAG+CGG 0.663740 5.3:-16604986 None:intergenic
AAGTCTCACTATCAAGACAA+AGG 0.667954 5.3:+16605074 MS.gene028078:CDS
CCACAGAAATCAGGGACCGG+CGG 0.674685 5.3:+16603185 MS.gene028078:CDS
TGTCCAAGAAGAGACCCTGT+AGG 0.707431 5.3:+16605446 MS.gene028078:CDS
TATGCCTCTACCAACCTACA+GGG 0.721432 5.3:-16605460 None:intergenic
ATTGGTAGCAAGATCCAATG+GGG 0.757229 5.3:-16605106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTATATATTTCTTTCTA+AGG + chr5.3:16604020-16604039 MS.gene028078:intron 15.0%
!! ATAATATACAGTAACAAAAT+TGG - chr5.3:16604236-16604255 None:intergenic 15.0%
!! ATTATTGTAAAAATATCTAC+AGG + chr5.3:16604160-16604179 MS.gene028078:intron 15.0%
!! TAATATACAGTAACAAAATT+GGG - chr5.3:16604235-16604254 None:intergenic 15.0%
!! TCAAATAAATTAATCCAAAT+AGG + chr5.3:16603875-16603894 MS.gene028078:intron 15.0%
!!! ACATTACTTTTAAAATATCT+GGG - chr5.3:16604005-16604024 None:intergenic 15.0%
!!! TACATTACTTTTAAAATATC+TGG - chr5.3:16604006-16604025 None:intergenic 15.0%
!! AATATACAGTAACAAAATTG+GGG - chr5.3:16604234-16604253 None:intergenic 20.0%
!! CTTATGTATACTATTGTAAA+AGG + chr5.3:16603461-16603480 MS.gene028078:intron 20.0%
!! GTTTCTTTAACATACATATT+TGG + chr5.3:16604646-16604665 MS.gene028078:intron 20.0%
!! TTAAGGAAGATAATTTAGTT+TGG + chr5.3:16604572-16604591 MS.gene028078:intron 20.0%
!!! ACAAGAAAATTTTAATTCTC+AGG - chr5.3:16604319-16604338 None:intergenic 20.0%
!!! ATTACTTTTAAAATATCTGG+GGG - chr5.3:16604003-16604022 None:intergenic 20.0%
!!! ATTTTACATGATTGTATTCT+GGG + chr5.3:16604538-16604557 MS.gene028078:intron 20.0%
!!! CATTACTTTTAAAATATCTG+GGG - chr5.3:16604004-16604023 None:intergenic 20.0%
! AAAATGAAAATCACACATGA+AGG + chr5.3:16604089-16604108 MS.gene028078:intron 25.0%
! AAATGAAAATCACACATGAA+GGG + chr5.3:16604090-16604109 MS.gene028078:intron 25.0%
! AATATGCATGTTTCTTTCTA+AGG - chr5.3:16604143-16604162 None:intergenic 25.0%
! ATAAGGAAGAATACTTTATC+TGG + chr5.3:16604715-16604734 MS.gene028078:intron 25.0%
! ATATACAGTAACAAAATTGG+GGG - chr5.3:16604233-16604252 None:intergenic 25.0%
! ATCATGTAAAATGTAGTCTA+TGG - chr5.3:16604530-16604549 None:intergenic 25.0%
! CATTAATGATAACCATGTAA+TGG - chr5.3:16603903-16603922 None:intergenic 25.0%
! CATTACATGGTTATCATTAA+TGG + chr5.3:16603901-16603920 MS.gene028078:intron 25.0%
! TAAGGAAGAATACTTTATCT+GGG + chr5.3:16604716-16604735 MS.gene028078:intron 25.0%
! TGAAGAGTTATGAAAATAAG+CGG + chr5.3:16603547-16603566 MS.gene028078:intron 25.0%
! TGTAGTCTATTGTTCAAATT+TGG - chr5.3:16604799-16604818 None:intergenic 25.0%
!! ATTTTAGATGACTGTATTCT+GGG + chr5.3:16604681-16604700 MS.gene028078:intron 25.0%
!! CATTTTACATGATTGTATTC+TGG + chr5.3:16604537-16604556 MS.gene028078:intron 25.0%
!! GAAGTTACTAGATTTTTCTT+TGG + chr5.3:16604460-16604479 MS.gene028078:intron 25.0%
!! GTCATCTAAAATATAGTCTA+TGG - chr5.3:16604673-16604692 None:intergenic 25.0%
!! TTTTACATGATTGTATTCTG+GGG + chr5.3:16604539-16604558 MS.gene028078:intron 25.0%
!!! AATTTTGATTTCAAATCCTC+TGG + chr5.3:16603256-16603275 MS.gene028078:CDS 25.0%
!!! TATTTTAGATGACTGTATTC+TGG + chr5.3:16604680-16604699 MS.gene028078:intron 25.0%
AAGAACGAAGATAAAACTGA+AGG + chr5.3:16605186-16605205 MS.gene028078:CDS 30.0%
AGAGGTTTAAACCAAAAGTT+GGG + chr5.3:16603925-16603944 MS.gene028078:intron 30.0%
AGTTATGACATACAAGAGTT+TGG + chr5.3:16603974-16603993 MS.gene028078:intron 30.0%
ATAAGGAGGAAAACTTTATC+TGG + chr5.3:16604434-16604453 MS.gene028078:intron 30.0%
GATGACATGAAAAAGAGTTA+GGG - chr5.3:16603338-16603357 None:intergenic 30.0%
GTTATGACATACAAGAGTTT+GGG + chr5.3:16603975-16603994 MS.gene028078:intron 30.0%
TAAGGAGGAAAACTTTATCT+GGG + chr5.3:16604435-16604454 MS.gene028078:intron 30.0%
TCAAGTACTTATCCAAGAAA+GGG + chr5.3:16605049-16605068 MS.gene028078:CDS 30.0%
TGATGACATGAAAAAGAGTT+AGG - chr5.3:16603339-16603358 None:intergenic 30.0%
TGGATGTTAAAGAAACAACA+AGG - chr5.3:16604779-16604798 None:intergenic 30.0%
TGGTAAAGTTAGTAGTAACT+GGG + chr5.3:16604592-16604611 MS.gene028078:intron 30.0%
TTCACTACTCAAATTACCTT+CGG - chr5.3:16605292-16605311 None:intergenic 30.0%
TTGGTAAAGTTAGTAGTAAC+TGG + chr5.3:16604591-16604610 MS.gene028078:intron 30.0%
TTTGAAAAGTCAGCTAAGAA+TGG + chr5.3:16605156-16605175 MS.gene028078:CDS 30.0%
! ATGCTATTTATCTGCTTGTT+AGG + chr5.3:16604278-16604297 MS.gene028078:intron 30.0%
! TACATTTAGCTGCATTTTCT+GGG + chr5.3:16604815-16604834 MS.gene028078:CDS 30.0%
! TGCTATTTATCTGCTTGTTA+GGG + chr5.3:16604279-16604298 MS.gene028078:intron 30.0%
! TTCTTCGTTTTCTTTTGGAT+CGG - chr5.3:16605214-16605233 None:intergenic 30.0%
!! TGTGTTCTAGAGAGAAAATA+AGG + chr5.3:16604417-16604436 MS.gene028078:intron 30.0%
!! TTTTTGAAAGCCTAGTCTAA+GGG - chr5.3:16603783-16603802 None:intergenic 30.0%
!!! TTTTTTGAAAGCCTAGTCTA+AGG - chr5.3:16603784-16603803 None:intergenic 30.0%
AAACCAAATCCACAGAAATC+AGG + chr5.3:16603176-16603195 MS.gene028078:CDS 35.0%
AAACTCTTCACAACCGAAAA+AGG + chr5.3:16605386-16605405 MS.gene028078:CDS 35.0%
AAATCACACATGAAGGGATA+TGG + chr5.3:16604096-16604115 MS.gene028078:intron 35.0%
AAATGTAGTCTATGGTCCAA+AGG - chr5.3:16604522-16604541 None:intergenic 35.0%
AACCAAATCCACAGAAATCA+GGG + chr5.3:16603177-16603196 MS.gene028078:CDS 35.0%
AAGGAGGAAAACTTTATCTG+GGG + chr5.3:16604436-16604455 MS.gene028078:intron 35.0%
AAGTCTCACTATCAAGACAA+AGG + chr5.3:16605074-16605093 MS.gene028078:CDS 35.0%
ACCCATTAAAAGCTAAAGCA+AGG - chr5.3:16603716-16603735 None:intergenic 35.0%
AGGGTAATGAAGATGATGAA+AGG + chr5.3:16605361-16605380 MS.gene028078:CDS 35.0%
ATGGTTATCATTAATGGCAG+AGG + chr5.3:16603907-16603926 MS.gene028078:intron 35.0%
ATTGAACCCCTCGAATTAAT+CGG + chr5.3:16603757-16603776 MS.gene028078:intron 35.0%
CAAGTACTTATCCAAGAAAG+GGG + chr5.3:16605050-16605069 MS.gene028078:CDS 35.0%
CAGAGGTTTAAACCAAAAGT+TGG + chr5.3:16603924-16603943 MS.gene028078:intron 35.0%
CCTTGAACAGCAAAATGTAA+TGG - chr5.3:16605012-16605031 None:intergenic 35.0%
GACTGTATTCTGGGTATATT+GGG + chr5.3:16604690-16604709 MS.gene028078:intron 35.0%
GAGGTTTAAACCAAAAGTTG+GGG + chr5.3:16603926-16603945 MS.gene028078:intron 35.0%
GCACATCTTAGTTATGACAT+AGG - chr5.3:16604198-16604217 None:intergenic 35.0%
GGGTAATGAAGATGATGAAA+GGG + chr5.3:16605362-16605381 MS.gene028078:CDS 35.0%
GTCAAGTACTTATCCAAGAA+AGG + chr5.3:16605048-16605067 MS.gene028078:CDS 35.0%
GTTTCTTCAACAATCACCTT+TGG + chr5.3:16604503-16604522 MS.gene028078:intron 35.0%
TAAGCTGCAAATAAGCGTTA+GGG - chr5.3:16603414-16603433 None:intergenic 35.0%
TCATAACTAAGATGTGCCAT+TGG + chr5.3:16604201-16604220 MS.gene028078:intron 35.0%
TCTGGGGAAAATTGGAATTA+AGG + chr5.3:16604555-16604574 MS.gene028078:intron 35.0%
TCTGGGTATATTGGGAAATA+AGG + chr5.3:16604698-16604717 MS.gene028078:intron 35.0%
TGACTGTATTCTGGGTATAT+TGG + chr5.3:16604689-16604708 MS.gene028078:intron 35.0%
TGCAAGAATAAAGCTGATGT+CGG + chr5.3:16604862-16604881 MS.gene028078:CDS 35.0%
TTTAGAAGTTGTTCGAACTC+TGG + chr5.3:16604939-16604958 MS.gene028078:CDS 35.0%
! CGAAGTAACTGAGTTTTTCT+TGG + chr5.3:16604739-16604758 MS.gene028078:intron 35.0%
! CTACATTTAGCTGCATTTTC+TGG + chr5.3:16604814-16604833 MS.gene028078:CDS 35.0%
! GATTGTATTCTGGGGAAAAT+TGG + chr5.3:16604547-16604566 MS.gene028078:intron 35.0%
! TCGGATTCTTCGTTTTCTTT+TGG - chr5.3:16605219-16605238 None:intergenic 35.0%
! TTTTTGCTCCATGTTTAAGG+TGG - chr5.3:16604064-16604083 None:intergenic 35.0%
!! ATGGACTAGTCTATCGAAAT+TGG - chr5.3:16603687-16603706 None:intergenic 35.0%
!! CTTTTCAAATCCCTCTAGAA+AGG - chr5.3:16605145-16605164 None:intergenic 35.0%
!! GTTCTAGAGAGAAAATAAGG+AGG + chr5.3:16604420-16604439 MS.gene028078:intron 35.0%
!! TGCGTTGATAATTGAGGATA+CGG - chr5.3:16603314-16603333 None:intergenic 35.0%
!! TGCTTTTTGCTCCATGTTTA+AGG - chr5.3:16604067-16604086 None:intergenic 35.0%
!!! AGCCTTGCTTTAGCTTTTAA+TGG + chr5.3:16603711-16603730 MS.gene028078:intron 35.0%
!!! CCATTACATTTTGCTGTTCA+AGG + chr5.3:16605009-16605028 MS.gene028078:CDS 35.0%
!!! GCCTTGCTTTAGCTTTTAAT+GGG + chr5.3:16603712-16603731 MS.gene028078:intron 35.0%
AAAGTGGTGAGAAAGAGAAG+AGG + chr5.3:16605337-16605356 MS.gene028078:CDS 40.0%
AAATTGGGGGTGATAACCAA+TGG - chr5.3:16604220-16604239 None:intergenic 40.0%
AATTAATCGGCCCTTAGACT+AGG + chr5.3:16603770-16603789 MS.gene028078:intron 40.0%
ACCATGTAATGGTGCCTATT+TGG - chr5.3:16603892-16603911 None:intergenic 40.0%
ACCTGAAGAATCTGATCCAA+AGG + chr5.3:16605248-16605267 MS.gene028078:CDS 40.0%
AGTACTTGACAAGTTCCAGA+TGG - chr5.3:16605038-16605057 None:intergenic 40.0%
AGTAGTAACTGGGTTTCACT+TGG + chr5.3:16604602-16604621 MS.gene028078:intron 40.0%
AGTTATGACATAGGAGAGCT+AGG - chr5.3:16604189-16604208 None:intergenic 40.0%
CTGAACTGTAATCAGATCAC+CGG - chr5.3:16603234-16603253 None:intergenic 40.0%
CTTCTGCATGTATGTGTCTA+TGG + chr5.3:16604365-16604384 MS.gene028078:intron 40.0%
CTTGGACATCATCTGAACTT+TGG - chr5.3:16605434-16605453 None:intergenic 40.0%
GTAAGCTGCAAATAAGCGTT+AGG - chr5.3:16603415-16603434 None:intergenic 40.0%
GTACTTGACAAGTTCCAGAT+GGG - chr5.3:16605037-16605056 None:intergenic 40.0%
GTAGTAACTGGGTTTCACTT+GGG + chr5.3:16604603-16604622 MS.gene028078:intron 40.0%
GTTATGACATAGGAGAGCTA+GGG - chr5.3:16604188-16604207 None:intergenic 40.0%
TAATTGAGGATACGGTGTTC+TGG - chr5.3:16603306-16603325 None:intergenic 40.0%
TCCAAATAGGCACCATTACA+TGG + chr5.3:16603888-16603907 MS.gene028078:intron 40.0%
TGCTTCTGCTATGGATGATA+TGG + chr5.3:16604885-16604904 MS.gene028078:CDS 40.0%
TTAAACCAAAAGTTGGGGCA+TGG + chr5.3:16603931-16603950 MS.gene028078:intron 40.0%
! ATTGGTAGCAAGATCCAATG+GGG - chr5.3:16605109-16605128 None:intergenic 40.0%
! CATCATCTGAACTTTGGAGA+TGG - chr5.3:16605428-16605447 None:intergenic 40.0%
! CATTGGTAGCAAGATCCAAT+GGG - chr5.3:16605110-16605129 None:intergenic 40.0%
! GCTACTGTTGATGAAGAAAG+TGG + chr5.3:16605321-16605340 MS.gene028078:CDS 40.0%
! TCAGATTCTTCAGGTGCTTT+TGG - chr5.3:16605243-16605262 None:intergenic 40.0%
! TCATTGGTAGCAAGATCCAA+TGG - chr5.3:16605111-16605130 None:intergenic 40.0%
! TTCTTCAGGTGCTTTTGGAT+CGG - chr5.3:16605238-16605257 None:intergenic 40.0%
! TTTAATGGGTCTCTTGCAAG+TGG + chr5.3:16603726-16603745 MS.gene028078:intron 40.0%
!! CATCAGCTTTATTCTTGCAG+AGG - chr5.3:16604861-16604880 None:intergenic 40.0%
!! GTGCTTATCTCTGGAATTGA+CGG - chr5.3:16603282-16603301 None:intergenic 40.0%
!! TAGGGTTGCGTTGATAATTG+AGG - chr5.3:16603320-16603339 None:intergenic 40.0%
AATCCACAGAAATCAGGGAC+CGG + chr5.3:16603182-16603201 MS.gene028078:CDS 45.0%
AGCTAAAGCAAGGCTCTGTA+TGG - chr5.3:16603706-16603725 None:intergenic 45.0%
ATAAGCTAACCCACTTGGGT+TGG + chr5.3:16603592-16603611 MS.gene028078:intron 45.0%
ATCGAACCTAAGACCTTGAG+AGG - chr5.3:16603653-16603672 None:intergenic 45.0%
ATGCCATAAGCTAACCCACT+TGG + chr5.3:16603587-16603606 MS.gene028078:intron 45.0%
ATTACCTTCGGAGCCTAAAG+AGG - chr5.3:16605280-16605299 None:intergenic 45.0%
CCTAAAGAGGATGATGCCTT+TGG - chr5.3:16605267-16605286 None:intergenic 45.0%
CTAAGGGCCGATTAATTCGA+GGG - chr5.3:16603767-16603786 None:intergenic 45.0%
CTCACTATCAAGACAAAGGC+AGG + chr5.3:16605078-16605097 MS.gene028078:CDS 45.0%
GCCTTTGGATCAGATTCTTC+AGG - chr5.3:16605252-16605271 None:intergenic 45.0%
GGTGAGAAAGAGAAGAGGAA+GGG + chr5.3:16605342-16605361 MS.gene028078:CDS 45.0%
GTCCCTGATTTCTGTGGATT+TGG - chr5.3:16603182-16603201 None:intergenic 45.0%
GTCTTAGGTTCGATTACCTC+TGG + chr5.3:16603659-16603678 MS.gene028078:intron 45.0%
TAAGGGCCGATTAATTCGAG+GGG - chr5.3:16603766-16603785 None:intergenic 45.0%
TCTAAGGGCCGATTAATTCG+AGG - chr5.3:16603768-16603787 None:intergenic 45.0%
TCTATCGAAATTGGCACCAG+AGG - chr5.3:16603678-16603697 None:intergenic 45.0%
TCTTCATCAACAGTAGCTGC+AGG - chr5.3:16605318-16605337 None:intergenic 45.0%
TGCCATAAGCTAACCCACTT+GGG + chr5.3:16603588-16603607 MS.gene028078:intron 45.0%
TGGTGAGAAAGAGAAGAGGA+AGG + chr5.3:16605341-16605360 MS.gene028078:CDS 45.0%
! AAAGGAGCGGACTTCATCAT+TGG - chr5.3:16605127-16605146 None:intergenic 45.0%
! AGCTGAACTCTCGCCTTTTT+CGG - chr5.3:16605402-16605421 None:intergenic 45.0%
! CAAATCCCTCTAGAAAGGAG+CGG - chr5.3:16605140-16605159 None:intergenic 45.0%
! TGCTCCATGTTTAAGGTGGT+GGG - chr5.3:16604060-16604079 None:intergenic 45.0%
! TTGCTCCATGTTTAAGGTGG+TGG - chr5.3:16604061-16604080 None:intergenic 45.0%
!! AACCCAAGTGGGTTAGCTTA+TGG - chr5.3:16603593-16603612 None:intergenic 45.0%
!! CCAAAGGCATCATCCTCTTT+AGG + chr5.3:16605264-16605283 MS.gene028078:CDS 45.0%
!! TGTTCTGGAGTGCTTATCTC+TGG - chr5.3:16603291-16603310 None:intergenic 45.0%
AAAGGCAGGAAAGACCCCAT+TGG + chr5.3:16605092-16605111 MS.gene028078:CDS 50.0%
AACCAAAAGTTGGGGCATGG+AGG + chr5.3:16603934-16603953 MS.gene028078:intron 50.0%
AGTGAGACTTGCCCCTTTCT+TGG - chr5.3:16605064-16605083 None:intergenic 50.0%
ATACACTTCGCGGCACAGAA+AGG + chr5.3:16604913-16604932 MS.gene028078:CDS 50.0%
ATGGGTCTCTTGCAAGTGGA+CGG + chr5.3:16603730-16603749 MS.gene028078:intron 50.0%
CCTCTTTCAAAGCCGCTACT+CGG + chr5.3:16604974-16604993 MS.gene028078:CDS 50.0%
GAAGTCCGCTCCTTTCTAGA+GGG + chr5.3:16605132-16605151 MS.gene028078:CDS 50.0%
TATGGCCGCAATACACTTCG+CGG + chr5.3:16604903-16604922 MS.gene028078:CDS 50.0%
TCATCAACAGTAGCTGCAGG+AGG - chr5.3:16605315-16605334 None:intergenic 50.0%
TCATCCTCTTTAGGCTCCGA+AGG + chr5.3:16605273-16605292 MS.gene028078:CDS 50.0%
TGAAGTCCGCTCCTTTCTAG+AGG + chr5.3:16605131-16605150 MS.gene028078:CDS 50.0%
TGCTGTTCAAGGTTCCCATC+TGG + chr5.3:16605020-16605039 MS.gene028078:CDS 50.0%
TGTGGTCCTCTCAAGGTCTT+AGG + chr5.3:16603644-16603663 MS.gene028078:intron 50.0%
TTCAAAGCCGCTACTCGGAA+AGG + chr5.3:16604979-16604998 MS.gene028078:CDS 50.0%
! ATCCTCCATGCCCCAACTTT+TGG - chr5.3:16603939-16603958 None:intergenic 50.0%
! CTCCATGTTTAAGGTGGTGG+GGG - chr5.3:16604058-16604077 None:intergenic 50.0%
! GCTCCATGTTTAAGGTGGTG+GGG - chr5.3:16604059-16604078 None:intergenic 50.0%
! GTTCGAACTCTGGTTTCAGC+TGG + chr5.3:16604949-16604968 MS.gene028078:CDS 50.0%
! TGATGTCGGTGCTTCTGCTA+TGG + chr5.3:16604876-16604895 MS.gene028078:CDS 50.0%
! TGGTTTGGGATCTAGGAGTG+TGG + chr5.3:16603626-16603645 MS.gene028078:intron 50.0%
!! GAAGGGATATGGTGTTGTGC+TGG + chr5.3:16604107-16604126 MS.gene028078:intron 50.0%
AGTCACGCCTTTCCGAGTAG+CGG - chr5.3:16604989-16605008 None:intergenic 55.0%
CACCCCCACCACCTTAAACA+TGG + chr5.3:16604053-16604072 MS.gene028078:intron 55.0%
CTGTGCCGCGAAGTGTATTG+CGG - chr5.3:16604911-16604930 None:intergenic 55.0%
GTCTCTTGCAAGTGGACGGT+GGG + chr5.3:16603734-16603753 MS.gene028078:intron 55.0%
! CTAGGAGTGTGGTCCTCTCA+AGG + chr5.3:16603637-16603656 MS.gene028078:intron 55.0%
!! CCGAGTAGCGGCTTTGAAAG+AGG - chr5.3:16604977-16604996 None:intergenic 55.0%
!! CTAACCCACTTGGGTTGGTC+AGG + chr5.3:16603597-16603616 MS.gene028078:intron 55.0%
!! GTGGGGTTGGTTTGGGATCT+AGG + chr5.3:16603619-16603638 MS.gene028078:intron 55.0%
!! TCTCTGGAATTGACGGCCAG+AGG - chr5.3:16603275-16603294 None:intergenic 55.0%
!! TGGTCAGGTGGGGTTGGTTT+GGG + chr5.3:16603612-16603631 MS.gene028078:intron 55.0%
!! TTGGTCAGGTGGGGTTGGTT+TGG + chr5.3:16603611-16603630 MS.gene028078:intron 55.0%
CCACAGAAATCAGGGACCGG+CGG + chr5.3:16603185-16603204 MS.gene028078:CDS 60.0%
CCCACCTGACCAACCCAAGT+GGG - chr5.3:16603604-16603623 None:intergenic 60.0%
GGTCTCTTGCAAGTGGACGG+TGG + chr5.3:16603733-16603752 MS.gene028078:intron 60.0%
!! ACCCACTTGGGTTGGTCAGG+TGG + chr5.3:16603600-16603619 MS.gene028078:intron 60.0%
!! CCACTTGGGTTGGTCAGGTG+GGG + chr5.3:16603602-16603621 MS.gene028078:intron 60.0%
!! CCCACTTGGGTTGGTCAGGT+GGG + chr5.3:16603601-16603620 MS.gene028078:intron 60.0%
!! TTGGGTTGGTCAGGTGGGGT+TGG + chr5.3:16603606-16603625 MS.gene028078:intron 60.0%
CCCCACCTGACCAACCCAAG+TGG - chr5.3:16603605-16603624 None:intergenic 65.0%
CCGCCGGTCCCTGATTTCTG+TGG - chr5.3:16603188-16603207 None:intergenic 65.0%
CTTCATGCGGCGGCAAGGTC+CGG + chr5.3:16603212-16603231 MS.gene028078:CDS 65.0%
CGGACCTTGCCGCCGCATGA+AGG - chr5.3:16603214-16603233 None:intergenic 70.0%
GACCGGCGGCGACCTTCATG+CGG + chr5.3:16603199-16603218 MS.gene028078:CDS 70.0%
GCGACCTTCATGCGGCGGCA+AGG + chr5.3:16603207-16603226 MS.gene028078:CDS 70.0%
CGCCGCATGAAGGTCGCCGC+CGG - chr5.3:16603204-16603223 None:intergenic 75.0%
CGGCGGCGACCTTCATGCGG+CGG + chr5.3:16603202-16603221 MS.gene028078:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 16603170 16605467 16603170 ID=MS.gene028078
chr5.3 mRNA 16603170 16605467 16603170 ID=MS.gene028078.t1;Parent=MS.gene028078
chr5.3 exon 16603170 16603312 16603170 ID=MS.gene028078.t1.exon1;Parent=MS.gene028078.t1
chr5.3 CDS 16603170 16603312 16603170 ID=cds.MS.gene028078.t1;Parent=MS.gene028078.t1
chr5.3 exon 16604813 16605467 16604813 ID=MS.gene028078.t1.exon2;Parent=MS.gene028078.t1
chr5.3 CDS 16604813 16605467 16604813 ID=cds.MS.gene028078.t1;Parent=MS.gene028078.t1
Gene Sequence

>MS.gene028078

ATGGGTAAACCAAATCCACAGAAATCAGGGACCGGCGGCGACCTTCATGCGGCGGCAAGGTCCGGTGATCTGATTACAGTTCAGTCAATTTTGATTTCAAATCCTCTGGCCGTCAATTCCAGAGATAAGCACTCCAGAACACCGTATCCTCAATTATCAACGCAACCCTAACTCTTTTTCATGTCATCATTCATTCAATTTATTTCATTAGCTTTTATGTCTTTTCGTGTCATGAATGCAACCCTAACGCTTATTTGCAGCTTACAGCACAAGCGCTGATCATTTTAAATGCTTATGTATACTATTGTAAAAGGTAAAATTCAGTTTAAATTGTTTTTGTATAAGTTGTAAGTTGTTTTCGTATAAGCGCTTATCTTTGAAGAGTTATGAAAATAAGCGGAAAATAGCTTATGAATAATGCCATAAGCTAACCCACTTGGGTTGGTCAGGTGGGGTTGGTTTGGGATCTAGGAGTGTGGTCCTCTCAAGGTCTTAGGTTCGATTACCTCTGGTGCCAATTTCGATAGACTAGTCCATACAGAGCCTTGCTTTAGCTTTTAATGGGTCTCTTGCAAGTGGACGGTGGGATTGAACCCCTCGAATTAATCGGCCCTTAGACTAGGCTTTCAAAAAAAGAACAATGTCATAAGCTATTTTCATAAATTCTCTCAAACAGTCTCACAAAACTTATGTCTGTTGATAAACTCAAATAAATTAATCCAAATAGGCACCATTACATGGTTATCATTAATGGCAGAGGTTTAAACCAAAAGTTGGGGCATGGAGGATCTAATCTTAGTTATGAGTTATGACATACAAGAGTTTGGGCTCCCCCAGATATTTTAAAAGTAATGTATATATTTCTTTCTAAGGTAGTTGAGTTCACCCCCACCACCTTAAACATGGAGCAAAAAGCAAGAAAATGAAAATCACACATGAAGGGATATGGTGTTGTGCTGGTATAAATATACCTTAGAAAGAAACATGCATATTATTGTAAAAATATCTACAGGAACCCTAGCTCTCCTATGTCATAACTAAGATGTGCCATTGGTTATCACCCCCAATTTTGTTACTGTATATTATTCTCTCATTGTACTGAACTGAAATGCTATTTATCTGCTTGTTAGGGTATGCTTGCATGATCCTGAGAATTAAAATTTTCTTGTAGATATGAGTTGTGCTTCATGTTTTGCTTCTGCATGTATGTGTCTATGGATAGTTGACTATTTATTCAGTTACATGATTGTGTTCTAGAGAGAAAATAAGGAGGAAAACTTTATCTGGGGTGAAGTTACTAGATTTTTCTTTGGAATTTTAGCATTGCAATACTGTTTCTTCAACAATCACCTTTGGACCATAGACTACATTTTACATGATTGTATTCTGGGGAAAATTGGAATTAAGGAAGATAATTTAGTTTGGTAAAGTTAGTAGTAACTGGGTTTCACTTGGGAATTCTAGCATTGTCATATTGTTTCTTTAACATACATATTTGGACCATAGACTATATTTTAGATGACTGTATTCTGGGTATATTGGGAAATAAGGAAGAATACTTTATCTGGGCGAAGTAACTGAGTTTTTCTTGGTAATTCTAGCATTGCCTTGTTGTTTCTTTAACATCCAAATTTGAACAATAGACTACATTTAGCTGCATTTTCTGGGCAAACAGAAGTAGTCAGTTACCTCTGCAAGAATAAAGCTGATGTCGGTGCTTCTGCTATGGATGATATGGCCGCAATACACTTCGCGGCACAGAAAGGACATTTAGAAGTTGTTCGAACTCTGGTTTCAGCTGGTGCCTCTTTCAAAGCCGCTACTCGGAAAGGCGTGACTCCATTACATTTTGCTGTTCAAGGTTCCCATCTGGAACTTGTCAAGTACTTATCCAAGAAAGGGGCAAGTCTCACTATCAAGACAAAGGCAGGAAAGACCCCATTGGATCTTGCTACCAATGATGAAGTCCGCTCCTTTCTAGAGGGATTTGAAAAGTCAGCTAAGAATGGAGAGTCAAAGAACGAAGATAAAACTGAAGGTTCCGATCCAAAAGAAAACGAAGAATCCGATCCAAAAGCACCTGAAGAATCTGATCCAAAGGCATCATCCTCTTTAGGCTCCGAAGGTAATTTGAGTAGTGAACCTCCTGCAGCTACTGTTGATGAAGAAAGTGGTGAGAAAGAGAAGAGGAAGGGTAATGAAGATGATGAAAGGGAAAACTCTTCACAACCGAAAAAGGCGAGAGTTCAGCTAAGCCATCTCCAAAGTTCAGATGATGTCCAAGAAGAGACCCTGTAG

Protein sequence

>MS.gene028078.t1

MGKPNPQKSGTGGDLHAAARSGDLITVQSILISNPLAVNSRDKHSRTPLHLAAFSGQTEVVSYLCKNKADVGASAMDDMAAIHFAAQKGHLEVVRTLVSAGASFKAATRKGVTPLHFAVQGSHLELVKYLSKKGASLTIKTKAGKTPLDLATNDEVRSFLEGFEKSAKNGESKNEDKTEGSDPKENEESDPKAPEESDPKASSSLGSEGNLSSEPPAATVDEESGEKEKRKGNEDDERENSSQPKKARVQLSHLQSSDDVQEETL