Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028078.t1 | XP_003612598.1 | 87.1 | 263 | 34 | 0 | 1 | 263 | 1 | 263 | 2.40E-29 | 139.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028078.t1 | G7K6T6 | 87.1 | 263 | 34 | 0 | 1 | 263 | 1 | 263 | 1.7e-29 | 139.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene028078 | MS.gene073697 | PPI |
MS.gene028078 | MS.gene02595 | PPI |
MS.gene028078 | MS.gene25036 | PPI |
MS.gene33587 | MS.gene028078 | PPI |
MS.gene052891 | MS.gene028078 | PPI |
MS.gene89677 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene63845 | PPI |
MS.gene028078 | MS.gene62999 | PPI |
MS.gene08461 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene44226 | PPI |
MS.gene65953 | MS.gene028078 | PPI |
MS.gene27398 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene012131 | PPI |
MS.gene028078 | MS.gene018529 | PPI |
MS.gene069687 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene062793 | PPI |
MS.gene48062 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene026617 | PPI |
MS.gene64609 | MS.gene028078 | PPI |
MS.gene017616 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene040721 | PPI |
MS.gene84087 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene02544 | PPI |
MS.gene028078 | MS.gene065931 | PPI |
MS.gene028078 | MS.gene061923 | PPI |
MS.gene028078 | MS.gene041675 | PPI |
MS.gene051019 | MS.gene028078 | PPI |
MS.gene028078 | MS.gene81045 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028078.t1 | MTR_5g026800 | 96.578 | 263 | 9 | 0 | 1 | 263 | 1 | 263 | 0.0 | 514 |
MS.gene028078.t1 | MTR_6g027840 | 37.600 | 125 | 77 | 1 | 12 | 136 | 365 | 488 | 1.06e-16 | 79.7 |
MS.gene028078.t1 | MTR_5g043640 | 35.099 | 151 | 93 | 2 | 15 | 160 | 58 | 208 | 1.09e-16 | 77.4 |
MS.gene028078.t1 | MTR_5g043640 | 32.192 | 146 | 98 | 1 | 15 | 160 | 94 | 238 | 4.02e-13 | 67.8 |
MS.gene028078.t1 | MTR_6g088470 | 32.164 | 171 | 100 | 5 | 3 | 160 | 8 | 175 | 2.16e-15 | 75.9 |
MS.gene028078.t1 | MTR_3g088410 | 34.127 | 126 | 82 | 1 | 15 | 140 | 24 | 148 | 2.44e-15 | 72.0 |
MS.gene028078.t1 | MTR_5g022050 | 31.973 | 147 | 97 | 2 | 15 | 159 | 263 | 408 | 1.55e-14 | 73.2 |
MS.gene028078.t1 | MTR_5g023090 | 30.657 | 137 | 94 | 1 | 15 | 151 | 297 | 432 | 1.32e-13 | 70.5 |
MS.gene028078.t1 | MTR_1g100797 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 9.54e-13 | 68.2 |
MS.gene028078.t1 | MTR_8g056020 | 31.967 | 122 | 82 | 1 | 18 | 139 | 236 | 356 | 5.42e-12 | 65.5 |
MS.gene028078.t1 | MTR_7g117620 | 34.756 | 164 | 98 | 5 | 15 | 169 | 120 | 283 | 6.25e-12 | 65.5 |
MS.gene028078.t1 | MTR_4g062100 | 30.493 | 223 | 128 | 7 | 8 | 204 | 101 | 322 | 9.75e-12 | 65.1 |
MS.gene028078.t1 | MTR_2g048680 | 29.139 | 151 | 104 | 2 | 4 | 152 | 139 | 288 | 1.76e-11 | 63.5 |
MS.gene028078.t1 | MTR_6g088470 | 32.258 | 124 | 76 | 3 | 3 | 121 | 8 | 128 | 2.30e-11 | 63.9 |
MS.gene028078.t1 | MTR_0020s0130 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 4.09e-11 | 63.2 |
MS.gene028078.t1 | MTR_7g100430 | 32.886 | 149 | 96 | 4 | 8 | 152 | 154 | 302 | 5.01e-11 | 62.8 |
MS.gene028078.t1 | MTR_4g021880 | 29.940 | 167 | 95 | 5 | 15 | 160 | 136 | 301 | 6.92e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028078.t1 | AT4G19150 | 56.225 | 249 | 78 | 3 | 14 | 261 | 19 | 237 | 1.00e-82 | 248 |
MS.gene028078.t1 | AT4G19150 | 51.402 | 214 | 73 | 3 | 49 | 261 | 31 | 214 | 1.30e-58 | 186 |
MS.gene028078.t1 | AT5G12320 | 33.858 | 127 | 83 | 1 | 14 | 140 | 14 | 139 | 3.01e-17 | 76.6 |
MS.gene028078.t1 | AT5G40160 | 37.008 | 127 | 80 | 0 | 25 | 151 | 165 | 291 | 6.04e-17 | 79.3 |
MS.gene028078.t1 | AT2G03430 | 34.667 | 150 | 94 | 2 | 15 | 160 | 51 | 200 | 2.13e-16 | 76.6 |
MS.gene028078.t1 | AT2G03430 | 34.752 | 141 | 84 | 4 | 37 | 169 | 39 | 179 | 1.88e-11 | 62.8 |
MS.gene028078.t1 | AT2G03430 | 30.968 | 155 | 99 | 2 | 15 | 162 | 87 | 240 | 2.80e-11 | 62.4 |
MS.gene028078.t1 | AT5G66055 | 34.228 | 149 | 91 | 4 | 15 | 159 | 264 | 409 | 2.22e-16 | 78.6 |
MS.gene028078.t1 | AT3G24530 | 35.417 | 144 | 84 | 3 | 15 | 149 | 19 | 162 | 2.25e-15 | 75.9 |
MS.gene028078.t1 | AT5G40160 | 35.398 | 113 | 73 | 0 | 31 | 143 | 171 | 283 | 1.02e-13 | 70.1 |
MS.gene028078.t1 | AT2G31820 | 35.211 | 142 | 89 | 3 | 15 | 153 | 228 | 369 | 2.98e-13 | 69.7 |
MS.gene028078.t1 | AT1G05640 | 37.255 | 153 | 86 | 5 | 8 | 153 | 184 | 333 | 7.40e-13 | 68.6 |
MS.gene028078.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene028078.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene028078.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene028078.t1 | AT3G09890 | 32.692 | 156 | 97 | 2 | 14 | 161 | 42 | 197 | 8.52e-12 | 63.2 |
MS.gene028078.t1 | AT2G28840 | 33.333 | 174 | 80 | 8 | 15 | 160 | 50 | 215 | 9.11e-12 | 65.1 |
MS.gene028078.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 9.31e-12 | 65.1 |
MS.gene028078.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 9.31e-12 | 65.1 |
MS.gene028078.t1 | AT5G53470 | 32.374 | 139 | 56 | 3 | 15 | 151 | 222 | 324 | 1.14e-11 | 64.3 |
MS.gene028078.t1 | AT5G07270 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 1.86e-11 | 64.3 |
MS.gene028078.t1 | AT2G26650 | 31.081 | 148 | 99 | 2 | 4 | 151 | 544 | 688 | 2.27e-11 | 64.3 |
MS.gene028078.t1 | AT5G60070 | 34.416 | 154 | 88 | 5 | 8 | 152 | 104 | 253 | 2.75e-11 | 63.9 |
MS.gene028078.t1 | AT5G20350 | 32.203 | 177 | 102 | 6 | 15 | 183 | 102 | 268 | 6.59e-11 | 62.8 |
MS.gene028078.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 173 | 322 | 6.85e-11 | 62.8 |
MS.gene028078.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 173 | 322 | 6.85e-11 | 62.8 |
MS.gene028078.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 180 | 329 | 7.76e-11 | 62.4 |
MS.gene028078.t1 | AT4G27780 | 28.873 | 142 | 63 | 3 | 15 | 154 | 237 | 342 | 9.92e-11 | 61.6 |
Find 72 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGATTCTTCAGGTGCTTT+TGG | 0.220900 | 5.3:-16605240 | None:intergenic |
AGTGAGACTTGCCCCTTTCT+TGG | 0.248840 | 5.3:-16605061 | None:intergenic |
AAACTCTTCACAACCGAAAA+AGG | 0.282462 | 5.3:+16605386 | MS.gene028078:CDS |
GTCCCTGATTTCTGTGGATT+TGG | 0.294656 | 5.3:-16603179 | None:intergenic |
CAACCTACAGGGTCTCTTCT+TGG | 0.315944 | 5.3:-16605449 | None:intergenic |
GCCTTTGGATCAGATTCTTC+AGG | 0.317269 | 5.3:-16605249 | None:intergenic |
TGCTTCTGCTATGGATGATA+TGG | 0.344938 | 5.3:+16604885 | MS.gene028078:CDS |
CTTGGACATCATCTGAACTT+TGG | 0.372832 | 5.3:-16605431 | None:intergenic |
TAATTGAGGATACGGTGTTC+TGG | 0.393428 | 5.3:-16603303 | None:intergenic |
CTTCATGCGGCGGCAAGGTC+CGG | 0.398665 | 5.3:+16603212 | MS.gene028078:CDS |
AAACCAAATCCACAGAAATC+AGG | 0.401690 | 5.3:+16603176 | MS.gene028078:CDS |
TGCTGTTCAAGGTTCCCATC+TGG | 0.407073 | 5.3:+16605020 | MS.gene028078:CDS |
CCTAAAGAGGATGATGCCTT+TGG | 0.430235 | 5.3:-16605264 | None:intergenic |
GTCAAGTACTTATCCAAGAA+AGG | 0.442200 | 5.3:+16605048 | MS.gene028078:CDS |
CCAAAGGCATCATCCTCTTT+AGG | 0.445769 | 5.3:+16605264 | MS.gene028078:CDS |
CGCCGCATGAAGGTCGCCGC+CGG | 0.459979 | 5.3:-16603201 | None:intergenic |
TTCACTACTCAAATTACCTT+CGG | 0.461363 | 5.3:-16605289 | None:intergenic |
GTTCGAACTCTGGTTTCAGC+TGG | 0.463456 | 5.3:+16604949 | MS.gene028078:CDS |
TGTTCTGGAGTGCTTATCTC+TGG | 0.471688 | 5.3:-16603288 | None:intergenic |
CTCACTATCAAGACAAAGGC+AGG | 0.472180 | 5.3:+16605078 | MS.gene028078:CDS |
TCAAGTACTTATCCAAGAAA+GGG | 0.475565 | 5.3:+16605049 | MS.gene028078:CDS |
TTTAGAAGTTGTTCGAACTC+TGG | 0.476082 | 5.3:+16604939 | MS.gene028078:CDS |
CCGAGTAGCGGCTTTGAAAG+AGG | 0.477525 | 5.3:-16604974 | None:intergenic |
TGGTGAGAAAGAGAAGAGGA+AGG | 0.484213 | 5.3:+16605341 | MS.gene028078:CDS |
CATTGGTAGCAAGATCCAAT+GGG | 0.488232 | 5.3:-16605107 | None:intergenic |
TTTGAAAAGTCAGCTAAGAA+TGG | 0.495928 | 5.3:+16605156 | MS.gene028078:CDS |
AAAGGAGCGGACTTCATCAT+TGG | 0.515117 | 5.3:-16605124 | None:intergenic |
GTGCTTATCTCTGGAATTGA+CGG | 0.516931 | 5.3:-16603279 | None:intergenic |
GGGTAATGAAGATGATGAAA+GGG | 0.517277 | 5.3:+16605362 | MS.gene028078:CDS |
TCTTCATCAACAGTAGCTGC+AGG | 0.519575 | 5.3:-16605315 | None:intergenic |
CCTTGAACAGCAAAATGTAA+TGG | 0.521701 | 5.3:-16605009 | None:intergenic |
ATTACCTTCGGAGCCTAAAG+AGG | 0.537106 | 5.3:-16605277 | None:intergenic |
CGGACCTTGCCGCCGCATGA+AGG | 0.544030 | 5.3:-16603211 | None:intergenic |
GCGACCTTCATGCGGCGGCA+AGG | 0.544925 | 5.3:+16603207 | MS.gene028078:CDS |
CCTCTTTCAAAGCCGCTACT+CGG | 0.546704 | 5.3:+16604974 | MS.gene028078:CDS |
AGGGTAATGAAGATGATGAA+AGG | 0.548445 | 5.3:+16605361 | MS.gene028078:CDS |
TTCAAAGCCGCTACTCGGAA+AGG | 0.550795 | 5.3:+16604979 | MS.gene028078:CDS |
CATCATCTGAACTTTGGAGA+TGG | 0.551884 | 5.3:-16605425 | None:intergenic |
TGATGTCGGTGCTTCTGCTA+TGG | 0.553962 | 5.3:+16604876 | MS.gene028078:CDS |
TCATTGGTAGCAAGATCCAA+TGG | 0.558682 | 5.3:-16605108 | None:intergenic |
ACCTGAAGAATCTGATCCAA+AGG | 0.559801 | 5.3:+16605248 | MS.gene028078:CDS |
CATCAGCTTTATTCTTGCAG+AGG | 0.562565 | 5.3:-16604858 | None:intergenic |
CCGCCGGTCCCTGATTTCTG+TGG | 0.567523 | 5.3:-16603185 | None:intergenic |
AACCAAATCCACAGAAATCA+GGG | 0.569694 | 5.3:+16603177 | MS.gene028078:CDS |
CGGCGGCGACCTTCATGCGG+CGG | 0.573003 | 5.3:+16603202 | MS.gene028078:CDS |
AAAGTGGTGAGAAAGAGAAG+AGG | 0.577048 | 5.3:+16605337 | MS.gene028078:CDS |
GGTGAGAAAGAGAAGAGGAA+GGG | 0.577937 | 5.3:+16605342 | MS.gene028078:CDS |
TCATCCTCTTTAGGCTCCGA+AGG | 0.581554 | 5.3:+16605273 | MS.gene028078:CDS |
GACCGGCGGCGACCTTCATG+CGG | 0.583532 | 5.3:+16603199 | MS.gene028078:CDS |
AGTACTTGACAAGTTCCAGA+TGG | 0.589385 | 5.3:-16605035 | None:intergenic |
CTGTGCCGCGAAGTGTATTG+CGG | 0.594539 | 5.3:-16604908 | None:intergenic |
TATGGCCGCAATACACTTCG+CGG | 0.596559 | 5.3:+16604903 | MS.gene028078:CDS |
TCTCTGGAATTGACGGCCAG+AGG | 0.598799 | 5.3:-16603272 | None:intergenic |
ATACACTTCGCGGCACAGAA+AGG | 0.600317 | 5.3:+16604913 | MS.gene028078:CDS |
CTGAACTGTAATCAGATCAC+CGG | 0.610660 | 5.3:-16603231 | None:intergenic |
GAAGTCCGCTCCTTTCTAGA+GGG | 0.610884 | 5.3:+16605132 | MS.gene028078:CDS |
AAAGGCAGGAAAGACCCCAT+TGG | 0.612270 | 5.3:+16605092 | MS.gene028078:CDS |
AAGAACGAAGATAAAACTGA+AGG | 0.613960 | 5.3:+16605186 | MS.gene028078:CDS |
AATCCACAGAAATCAGGGAC+CGG | 0.618128 | 5.3:+16603182 | MS.gene028078:CDS |
TGAAGTCCGCTCCTTTCTAG+AGG | 0.622198 | 5.3:+16605131 | MS.gene028078:CDS |
CAAGTACTTATCCAAGAAAG+GGG | 0.626997 | 5.3:+16605050 | MS.gene028078:CDS |
CAAATCCCTCTAGAAAGGAG+CGG | 0.629038 | 5.3:-16605137 | None:intergenic |
GCTACTGTTGATGAAGAAAG+TGG | 0.635967 | 5.3:+16605321 | MS.gene028078:CDS |
TGCAAGAATAAAGCTGATGT+CGG | 0.636789 | 5.3:+16604862 | MS.gene028078:CDS |
GTACTTGACAAGTTCCAGAT+GGG | 0.651589 | 5.3:-16605034 | None:intergenic |
TCATCAACAGTAGCTGCAGG+AGG | 0.660427 | 5.3:-16605312 | None:intergenic |
AGTCACGCCTTTCCGAGTAG+CGG | 0.663740 | 5.3:-16604986 | None:intergenic |
AAGTCTCACTATCAAGACAA+AGG | 0.667954 | 5.3:+16605074 | MS.gene028078:CDS |
CCACAGAAATCAGGGACCGG+CGG | 0.674685 | 5.3:+16603185 | MS.gene028078:CDS |
TGTCCAAGAAGAGACCCTGT+AGG | 0.707431 | 5.3:+16605446 | MS.gene028078:CDS |
TATGCCTCTACCAACCTACA+GGG | 0.721432 | 5.3:-16605460 | None:intergenic |
ATTGGTAGCAAGATCCAATG+GGG | 0.757229 | 5.3:-16605106 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTATATATTTCTTTCTA+AGG | + | chr5.3:16604020-16604039 | MS.gene028078:intron | 15.0% |
!! | ATAATATACAGTAACAAAAT+TGG | - | chr5.3:16604236-16604255 | None:intergenic | 15.0% |
!! | ATTATTGTAAAAATATCTAC+AGG | + | chr5.3:16604160-16604179 | MS.gene028078:intron | 15.0% |
!! | TAATATACAGTAACAAAATT+GGG | - | chr5.3:16604235-16604254 | None:intergenic | 15.0% |
!! | TCAAATAAATTAATCCAAAT+AGG | + | chr5.3:16603875-16603894 | MS.gene028078:intron | 15.0% |
!!! | ACATTACTTTTAAAATATCT+GGG | - | chr5.3:16604005-16604024 | None:intergenic | 15.0% |
!!! | TACATTACTTTTAAAATATC+TGG | - | chr5.3:16604006-16604025 | None:intergenic | 15.0% |
!! | AATATACAGTAACAAAATTG+GGG | - | chr5.3:16604234-16604253 | None:intergenic | 20.0% |
!! | CTTATGTATACTATTGTAAA+AGG | + | chr5.3:16603461-16603480 | MS.gene028078:intron | 20.0% |
!! | GTTTCTTTAACATACATATT+TGG | + | chr5.3:16604646-16604665 | MS.gene028078:intron | 20.0% |
!! | TTAAGGAAGATAATTTAGTT+TGG | + | chr5.3:16604572-16604591 | MS.gene028078:intron | 20.0% |
!!! | ACAAGAAAATTTTAATTCTC+AGG | - | chr5.3:16604319-16604338 | None:intergenic | 20.0% |
!!! | ATTACTTTTAAAATATCTGG+GGG | - | chr5.3:16604003-16604022 | None:intergenic | 20.0% |
!!! | ATTTTACATGATTGTATTCT+GGG | + | chr5.3:16604538-16604557 | MS.gene028078:intron | 20.0% |
!!! | CATTACTTTTAAAATATCTG+GGG | - | chr5.3:16604004-16604023 | None:intergenic | 20.0% |
! | AAAATGAAAATCACACATGA+AGG | + | chr5.3:16604089-16604108 | MS.gene028078:intron | 25.0% |
! | AAATGAAAATCACACATGAA+GGG | + | chr5.3:16604090-16604109 | MS.gene028078:intron | 25.0% |
! | AATATGCATGTTTCTTTCTA+AGG | - | chr5.3:16604143-16604162 | None:intergenic | 25.0% |
! | ATAAGGAAGAATACTTTATC+TGG | + | chr5.3:16604715-16604734 | MS.gene028078:intron | 25.0% |
! | ATATACAGTAACAAAATTGG+GGG | - | chr5.3:16604233-16604252 | None:intergenic | 25.0% |
! | ATCATGTAAAATGTAGTCTA+TGG | - | chr5.3:16604530-16604549 | None:intergenic | 25.0% |
! | CATTAATGATAACCATGTAA+TGG | - | chr5.3:16603903-16603922 | None:intergenic | 25.0% |
! | CATTACATGGTTATCATTAA+TGG | + | chr5.3:16603901-16603920 | MS.gene028078:intron | 25.0% |
! | TAAGGAAGAATACTTTATCT+GGG | + | chr5.3:16604716-16604735 | MS.gene028078:intron | 25.0% |
! | TGAAGAGTTATGAAAATAAG+CGG | + | chr5.3:16603547-16603566 | MS.gene028078:intron | 25.0% |
! | TGTAGTCTATTGTTCAAATT+TGG | - | chr5.3:16604799-16604818 | None:intergenic | 25.0% |
!! | ATTTTAGATGACTGTATTCT+GGG | + | chr5.3:16604681-16604700 | MS.gene028078:intron | 25.0% |
!! | CATTTTACATGATTGTATTC+TGG | + | chr5.3:16604537-16604556 | MS.gene028078:intron | 25.0% |
!! | GAAGTTACTAGATTTTTCTT+TGG | + | chr5.3:16604460-16604479 | MS.gene028078:intron | 25.0% |
!! | GTCATCTAAAATATAGTCTA+TGG | - | chr5.3:16604673-16604692 | None:intergenic | 25.0% |
!! | TTTTACATGATTGTATTCTG+GGG | + | chr5.3:16604539-16604558 | MS.gene028078:intron | 25.0% |
!!! | AATTTTGATTTCAAATCCTC+TGG | + | chr5.3:16603256-16603275 | MS.gene028078:CDS | 25.0% |
!!! | TATTTTAGATGACTGTATTC+TGG | + | chr5.3:16604680-16604699 | MS.gene028078:intron | 25.0% |
AAGAACGAAGATAAAACTGA+AGG | + | chr5.3:16605186-16605205 | MS.gene028078:CDS | 30.0% | |
AGAGGTTTAAACCAAAAGTT+GGG | + | chr5.3:16603925-16603944 | MS.gene028078:intron | 30.0% | |
AGTTATGACATACAAGAGTT+TGG | + | chr5.3:16603974-16603993 | MS.gene028078:intron | 30.0% | |
ATAAGGAGGAAAACTTTATC+TGG | + | chr5.3:16604434-16604453 | MS.gene028078:intron | 30.0% | |
GATGACATGAAAAAGAGTTA+GGG | - | chr5.3:16603338-16603357 | None:intergenic | 30.0% | |
GTTATGACATACAAGAGTTT+GGG | + | chr5.3:16603975-16603994 | MS.gene028078:intron | 30.0% | |
TAAGGAGGAAAACTTTATCT+GGG | + | chr5.3:16604435-16604454 | MS.gene028078:intron | 30.0% | |
TCAAGTACTTATCCAAGAAA+GGG | + | chr5.3:16605049-16605068 | MS.gene028078:CDS | 30.0% | |
TGATGACATGAAAAAGAGTT+AGG | - | chr5.3:16603339-16603358 | None:intergenic | 30.0% | |
TGGATGTTAAAGAAACAACA+AGG | - | chr5.3:16604779-16604798 | None:intergenic | 30.0% | |
TGGTAAAGTTAGTAGTAACT+GGG | + | chr5.3:16604592-16604611 | MS.gene028078:intron | 30.0% | |
TTCACTACTCAAATTACCTT+CGG | - | chr5.3:16605292-16605311 | None:intergenic | 30.0% | |
TTGGTAAAGTTAGTAGTAAC+TGG | + | chr5.3:16604591-16604610 | MS.gene028078:intron | 30.0% | |
TTTGAAAAGTCAGCTAAGAA+TGG | + | chr5.3:16605156-16605175 | MS.gene028078:CDS | 30.0% | |
! | ATGCTATTTATCTGCTTGTT+AGG | + | chr5.3:16604278-16604297 | MS.gene028078:intron | 30.0% |
! | TACATTTAGCTGCATTTTCT+GGG | + | chr5.3:16604815-16604834 | MS.gene028078:CDS | 30.0% |
! | TGCTATTTATCTGCTTGTTA+GGG | + | chr5.3:16604279-16604298 | MS.gene028078:intron | 30.0% |
! | TTCTTCGTTTTCTTTTGGAT+CGG | - | chr5.3:16605214-16605233 | None:intergenic | 30.0% |
!! | TGTGTTCTAGAGAGAAAATA+AGG | + | chr5.3:16604417-16604436 | MS.gene028078:intron | 30.0% |
!! | TTTTTGAAAGCCTAGTCTAA+GGG | - | chr5.3:16603783-16603802 | None:intergenic | 30.0% |
!!! | TTTTTTGAAAGCCTAGTCTA+AGG | - | chr5.3:16603784-16603803 | None:intergenic | 30.0% |
AAACCAAATCCACAGAAATC+AGG | + | chr5.3:16603176-16603195 | MS.gene028078:CDS | 35.0% | |
AAACTCTTCACAACCGAAAA+AGG | + | chr5.3:16605386-16605405 | MS.gene028078:CDS | 35.0% | |
AAATCACACATGAAGGGATA+TGG | + | chr5.3:16604096-16604115 | MS.gene028078:intron | 35.0% | |
AAATGTAGTCTATGGTCCAA+AGG | - | chr5.3:16604522-16604541 | None:intergenic | 35.0% | |
AACCAAATCCACAGAAATCA+GGG | + | chr5.3:16603177-16603196 | MS.gene028078:CDS | 35.0% | |
AAGGAGGAAAACTTTATCTG+GGG | + | chr5.3:16604436-16604455 | MS.gene028078:intron | 35.0% | |
AAGTCTCACTATCAAGACAA+AGG | + | chr5.3:16605074-16605093 | MS.gene028078:CDS | 35.0% | |
ACCCATTAAAAGCTAAAGCA+AGG | - | chr5.3:16603716-16603735 | None:intergenic | 35.0% | |
AGGGTAATGAAGATGATGAA+AGG | + | chr5.3:16605361-16605380 | MS.gene028078:CDS | 35.0% | |
ATGGTTATCATTAATGGCAG+AGG | + | chr5.3:16603907-16603926 | MS.gene028078:intron | 35.0% | |
ATTGAACCCCTCGAATTAAT+CGG | + | chr5.3:16603757-16603776 | MS.gene028078:intron | 35.0% | |
CAAGTACTTATCCAAGAAAG+GGG | + | chr5.3:16605050-16605069 | MS.gene028078:CDS | 35.0% | |
CAGAGGTTTAAACCAAAAGT+TGG | + | chr5.3:16603924-16603943 | MS.gene028078:intron | 35.0% | |
CCTTGAACAGCAAAATGTAA+TGG | - | chr5.3:16605012-16605031 | None:intergenic | 35.0% | |
GACTGTATTCTGGGTATATT+GGG | + | chr5.3:16604690-16604709 | MS.gene028078:intron | 35.0% | |
GAGGTTTAAACCAAAAGTTG+GGG | + | chr5.3:16603926-16603945 | MS.gene028078:intron | 35.0% | |
GCACATCTTAGTTATGACAT+AGG | - | chr5.3:16604198-16604217 | None:intergenic | 35.0% | |
GGGTAATGAAGATGATGAAA+GGG | + | chr5.3:16605362-16605381 | MS.gene028078:CDS | 35.0% | |
GTCAAGTACTTATCCAAGAA+AGG | + | chr5.3:16605048-16605067 | MS.gene028078:CDS | 35.0% | |
GTTTCTTCAACAATCACCTT+TGG | + | chr5.3:16604503-16604522 | MS.gene028078:intron | 35.0% | |
TAAGCTGCAAATAAGCGTTA+GGG | - | chr5.3:16603414-16603433 | None:intergenic | 35.0% | |
TCATAACTAAGATGTGCCAT+TGG | + | chr5.3:16604201-16604220 | MS.gene028078:intron | 35.0% | |
TCTGGGGAAAATTGGAATTA+AGG | + | chr5.3:16604555-16604574 | MS.gene028078:intron | 35.0% | |
TCTGGGTATATTGGGAAATA+AGG | + | chr5.3:16604698-16604717 | MS.gene028078:intron | 35.0% | |
TGACTGTATTCTGGGTATAT+TGG | + | chr5.3:16604689-16604708 | MS.gene028078:intron | 35.0% | |
TGCAAGAATAAAGCTGATGT+CGG | + | chr5.3:16604862-16604881 | MS.gene028078:CDS | 35.0% | |
TTTAGAAGTTGTTCGAACTC+TGG | + | chr5.3:16604939-16604958 | MS.gene028078:CDS | 35.0% | |
! | CGAAGTAACTGAGTTTTTCT+TGG | + | chr5.3:16604739-16604758 | MS.gene028078:intron | 35.0% |
! | CTACATTTAGCTGCATTTTC+TGG | + | chr5.3:16604814-16604833 | MS.gene028078:CDS | 35.0% |
! | GATTGTATTCTGGGGAAAAT+TGG | + | chr5.3:16604547-16604566 | MS.gene028078:intron | 35.0% |
! | TCGGATTCTTCGTTTTCTTT+TGG | - | chr5.3:16605219-16605238 | None:intergenic | 35.0% |
! | TTTTTGCTCCATGTTTAAGG+TGG | - | chr5.3:16604064-16604083 | None:intergenic | 35.0% |
!! | ATGGACTAGTCTATCGAAAT+TGG | - | chr5.3:16603687-16603706 | None:intergenic | 35.0% |
!! | CTTTTCAAATCCCTCTAGAA+AGG | - | chr5.3:16605145-16605164 | None:intergenic | 35.0% |
!! | GTTCTAGAGAGAAAATAAGG+AGG | + | chr5.3:16604420-16604439 | MS.gene028078:intron | 35.0% |
!! | TGCGTTGATAATTGAGGATA+CGG | - | chr5.3:16603314-16603333 | None:intergenic | 35.0% |
!! | TGCTTTTTGCTCCATGTTTA+AGG | - | chr5.3:16604067-16604086 | None:intergenic | 35.0% |
!!! | AGCCTTGCTTTAGCTTTTAA+TGG | + | chr5.3:16603711-16603730 | MS.gene028078:intron | 35.0% |
!!! | CCATTACATTTTGCTGTTCA+AGG | + | chr5.3:16605009-16605028 | MS.gene028078:CDS | 35.0% |
!!! | GCCTTGCTTTAGCTTTTAAT+GGG | + | chr5.3:16603712-16603731 | MS.gene028078:intron | 35.0% |
AAAGTGGTGAGAAAGAGAAG+AGG | + | chr5.3:16605337-16605356 | MS.gene028078:CDS | 40.0% | |
AAATTGGGGGTGATAACCAA+TGG | - | chr5.3:16604220-16604239 | None:intergenic | 40.0% | |
AATTAATCGGCCCTTAGACT+AGG | + | chr5.3:16603770-16603789 | MS.gene028078:intron | 40.0% | |
ACCATGTAATGGTGCCTATT+TGG | - | chr5.3:16603892-16603911 | None:intergenic | 40.0% | |
ACCTGAAGAATCTGATCCAA+AGG | + | chr5.3:16605248-16605267 | MS.gene028078:CDS | 40.0% | |
AGTACTTGACAAGTTCCAGA+TGG | - | chr5.3:16605038-16605057 | None:intergenic | 40.0% | |
AGTAGTAACTGGGTTTCACT+TGG | + | chr5.3:16604602-16604621 | MS.gene028078:intron | 40.0% | |
AGTTATGACATAGGAGAGCT+AGG | - | chr5.3:16604189-16604208 | None:intergenic | 40.0% | |
CTGAACTGTAATCAGATCAC+CGG | - | chr5.3:16603234-16603253 | None:intergenic | 40.0% | |
CTTCTGCATGTATGTGTCTA+TGG | + | chr5.3:16604365-16604384 | MS.gene028078:intron | 40.0% | |
CTTGGACATCATCTGAACTT+TGG | - | chr5.3:16605434-16605453 | None:intergenic | 40.0% | |
GTAAGCTGCAAATAAGCGTT+AGG | - | chr5.3:16603415-16603434 | None:intergenic | 40.0% | |
GTACTTGACAAGTTCCAGAT+GGG | - | chr5.3:16605037-16605056 | None:intergenic | 40.0% | |
GTAGTAACTGGGTTTCACTT+GGG | + | chr5.3:16604603-16604622 | MS.gene028078:intron | 40.0% | |
GTTATGACATAGGAGAGCTA+GGG | - | chr5.3:16604188-16604207 | None:intergenic | 40.0% | |
TAATTGAGGATACGGTGTTC+TGG | - | chr5.3:16603306-16603325 | None:intergenic | 40.0% | |
TCCAAATAGGCACCATTACA+TGG | + | chr5.3:16603888-16603907 | MS.gene028078:intron | 40.0% | |
TGCTTCTGCTATGGATGATA+TGG | + | chr5.3:16604885-16604904 | MS.gene028078:CDS | 40.0% | |
TTAAACCAAAAGTTGGGGCA+TGG | + | chr5.3:16603931-16603950 | MS.gene028078:intron | 40.0% | |
! | ATTGGTAGCAAGATCCAATG+GGG | - | chr5.3:16605109-16605128 | None:intergenic | 40.0% |
! | CATCATCTGAACTTTGGAGA+TGG | - | chr5.3:16605428-16605447 | None:intergenic | 40.0% |
! | CATTGGTAGCAAGATCCAAT+GGG | - | chr5.3:16605110-16605129 | None:intergenic | 40.0% |
! | GCTACTGTTGATGAAGAAAG+TGG | + | chr5.3:16605321-16605340 | MS.gene028078:CDS | 40.0% |
! | TCAGATTCTTCAGGTGCTTT+TGG | - | chr5.3:16605243-16605262 | None:intergenic | 40.0% |
! | TCATTGGTAGCAAGATCCAA+TGG | - | chr5.3:16605111-16605130 | None:intergenic | 40.0% |
! | TTCTTCAGGTGCTTTTGGAT+CGG | - | chr5.3:16605238-16605257 | None:intergenic | 40.0% |
! | TTTAATGGGTCTCTTGCAAG+TGG | + | chr5.3:16603726-16603745 | MS.gene028078:intron | 40.0% |
!! | CATCAGCTTTATTCTTGCAG+AGG | - | chr5.3:16604861-16604880 | None:intergenic | 40.0% |
!! | GTGCTTATCTCTGGAATTGA+CGG | - | chr5.3:16603282-16603301 | None:intergenic | 40.0% |
!! | TAGGGTTGCGTTGATAATTG+AGG | - | chr5.3:16603320-16603339 | None:intergenic | 40.0% |
AATCCACAGAAATCAGGGAC+CGG | + | chr5.3:16603182-16603201 | MS.gene028078:CDS | 45.0% | |
AGCTAAAGCAAGGCTCTGTA+TGG | - | chr5.3:16603706-16603725 | None:intergenic | 45.0% | |
ATAAGCTAACCCACTTGGGT+TGG | + | chr5.3:16603592-16603611 | MS.gene028078:intron | 45.0% | |
ATCGAACCTAAGACCTTGAG+AGG | - | chr5.3:16603653-16603672 | None:intergenic | 45.0% | |
ATGCCATAAGCTAACCCACT+TGG | + | chr5.3:16603587-16603606 | MS.gene028078:intron | 45.0% | |
ATTACCTTCGGAGCCTAAAG+AGG | - | chr5.3:16605280-16605299 | None:intergenic | 45.0% | |
CCTAAAGAGGATGATGCCTT+TGG | - | chr5.3:16605267-16605286 | None:intergenic | 45.0% | |
CTAAGGGCCGATTAATTCGA+GGG | - | chr5.3:16603767-16603786 | None:intergenic | 45.0% | |
CTCACTATCAAGACAAAGGC+AGG | + | chr5.3:16605078-16605097 | MS.gene028078:CDS | 45.0% | |
GCCTTTGGATCAGATTCTTC+AGG | - | chr5.3:16605252-16605271 | None:intergenic | 45.0% | |
GGTGAGAAAGAGAAGAGGAA+GGG | + | chr5.3:16605342-16605361 | MS.gene028078:CDS | 45.0% | |
GTCCCTGATTTCTGTGGATT+TGG | - | chr5.3:16603182-16603201 | None:intergenic | 45.0% | |
GTCTTAGGTTCGATTACCTC+TGG | + | chr5.3:16603659-16603678 | MS.gene028078:intron | 45.0% | |
TAAGGGCCGATTAATTCGAG+GGG | - | chr5.3:16603766-16603785 | None:intergenic | 45.0% | |
TCTAAGGGCCGATTAATTCG+AGG | - | chr5.3:16603768-16603787 | None:intergenic | 45.0% | |
TCTATCGAAATTGGCACCAG+AGG | - | chr5.3:16603678-16603697 | None:intergenic | 45.0% | |
TCTTCATCAACAGTAGCTGC+AGG | - | chr5.3:16605318-16605337 | None:intergenic | 45.0% | |
TGCCATAAGCTAACCCACTT+GGG | + | chr5.3:16603588-16603607 | MS.gene028078:intron | 45.0% | |
TGGTGAGAAAGAGAAGAGGA+AGG | + | chr5.3:16605341-16605360 | MS.gene028078:CDS | 45.0% | |
! | AAAGGAGCGGACTTCATCAT+TGG | - | chr5.3:16605127-16605146 | None:intergenic | 45.0% |
! | AGCTGAACTCTCGCCTTTTT+CGG | - | chr5.3:16605402-16605421 | None:intergenic | 45.0% |
! | CAAATCCCTCTAGAAAGGAG+CGG | - | chr5.3:16605140-16605159 | None:intergenic | 45.0% |
! | TGCTCCATGTTTAAGGTGGT+GGG | - | chr5.3:16604060-16604079 | None:intergenic | 45.0% |
! | TTGCTCCATGTTTAAGGTGG+TGG | - | chr5.3:16604061-16604080 | None:intergenic | 45.0% |
!! | AACCCAAGTGGGTTAGCTTA+TGG | - | chr5.3:16603593-16603612 | None:intergenic | 45.0% |
!! | CCAAAGGCATCATCCTCTTT+AGG | + | chr5.3:16605264-16605283 | MS.gene028078:CDS | 45.0% |
!! | TGTTCTGGAGTGCTTATCTC+TGG | - | chr5.3:16603291-16603310 | None:intergenic | 45.0% |
AAAGGCAGGAAAGACCCCAT+TGG | + | chr5.3:16605092-16605111 | MS.gene028078:CDS | 50.0% | |
AACCAAAAGTTGGGGCATGG+AGG | + | chr5.3:16603934-16603953 | MS.gene028078:intron | 50.0% | |
AGTGAGACTTGCCCCTTTCT+TGG | - | chr5.3:16605064-16605083 | None:intergenic | 50.0% | |
ATACACTTCGCGGCACAGAA+AGG | + | chr5.3:16604913-16604932 | MS.gene028078:CDS | 50.0% | |
ATGGGTCTCTTGCAAGTGGA+CGG | + | chr5.3:16603730-16603749 | MS.gene028078:intron | 50.0% | |
CCTCTTTCAAAGCCGCTACT+CGG | + | chr5.3:16604974-16604993 | MS.gene028078:CDS | 50.0% | |
GAAGTCCGCTCCTTTCTAGA+GGG | + | chr5.3:16605132-16605151 | MS.gene028078:CDS | 50.0% | |
TATGGCCGCAATACACTTCG+CGG | + | chr5.3:16604903-16604922 | MS.gene028078:CDS | 50.0% | |
TCATCAACAGTAGCTGCAGG+AGG | - | chr5.3:16605315-16605334 | None:intergenic | 50.0% | |
TCATCCTCTTTAGGCTCCGA+AGG | + | chr5.3:16605273-16605292 | MS.gene028078:CDS | 50.0% | |
TGAAGTCCGCTCCTTTCTAG+AGG | + | chr5.3:16605131-16605150 | MS.gene028078:CDS | 50.0% | |
TGCTGTTCAAGGTTCCCATC+TGG | + | chr5.3:16605020-16605039 | MS.gene028078:CDS | 50.0% | |
TGTGGTCCTCTCAAGGTCTT+AGG | + | chr5.3:16603644-16603663 | MS.gene028078:intron | 50.0% | |
TTCAAAGCCGCTACTCGGAA+AGG | + | chr5.3:16604979-16604998 | MS.gene028078:CDS | 50.0% | |
! | ATCCTCCATGCCCCAACTTT+TGG | - | chr5.3:16603939-16603958 | None:intergenic | 50.0% |
! | CTCCATGTTTAAGGTGGTGG+GGG | - | chr5.3:16604058-16604077 | None:intergenic | 50.0% |
! | GCTCCATGTTTAAGGTGGTG+GGG | - | chr5.3:16604059-16604078 | None:intergenic | 50.0% |
! | GTTCGAACTCTGGTTTCAGC+TGG | + | chr5.3:16604949-16604968 | MS.gene028078:CDS | 50.0% |
! | TGATGTCGGTGCTTCTGCTA+TGG | + | chr5.3:16604876-16604895 | MS.gene028078:CDS | 50.0% |
! | TGGTTTGGGATCTAGGAGTG+TGG | + | chr5.3:16603626-16603645 | MS.gene028078:intron | 50.0% |
!! | GAAGGGATATGGTGTTGTGC+TGG | + | chr5.3:16604107-16604126 | MS.gene028078:intron | 50.0% |
AGTCACGCCTTTCCGAGTAG+CGG | - | chr5.3:16604989-16605008 | None:intergenic | 55.0% | |
CACCCCCACCACCTTAAACA+TGG | + | chr5.3:16604053-16604072 | MS.gene028078:intron | 55.0% | |
CTGTGCCGCGAAGTGTATTG+CGG | - | chr5.3:16604911-16604930 | None:intergenic | 55.0% | |
GTCTCTTGCAAGTGGACGGT+GGG | + | chr5.3:16603734-16603753 | MS.gene028078:intron | 55.0% | |
! | CTAGGAGTGTGGTCCTCTCA+AGG | + | chr5.3:16603637-16603656 | MS.gene028078:intron | 55.0% |
!! | CCGAGTAGCGGCTTTGAAAG+AGG | - | chr5.3:16604977-16604996 | None:intergenic | 55.0% |
!! | CTAACCCACTTGGGTTGGTC+AGG | + | chr5.3:16603597-16603616 | MS.gene028078:intron | 55.0% |
!! | GTGGGGTTGGTTTGGGATCT+AGG | + | chr5.3:16603619-16603638 | MS.gene028078:intron | 55.0% |
!! | TCTCTGGAATTGACGGCCAG+AGG | - | chr5.3:16603275-16603294 | None:intergenic | 55.0% |
!! | TGGTCAGGTGGGGTTGGTTT+GGG | + | chr5.3:16603612-16603631 | MS.gene028078:intron | 55.0% |
!! | TTGGTCAGGTGGGGTTGGTT+TGG | + | chr5.3:16603611-16603630 | MS.gene028078:intron | 55.0% |
CCACAGAAATCAGGGACCGG+CGG | + | chr5.3:16603185-16603204 | MS.gene028078:CDS | 60.0% | |
CCCACCTGACCAACCCAAGT+GGG | - | chr5.3:16603604-16603623 | None:intergenic | 60.0% | |
GGTCTCTTGCAAGTGGACGG+TGG | + | chr5.3:16603733-16603752 | MS.gene028078:intron | 60.0% | |
!! | ACCCACTTGGGTTGGTCAGG+TGG | + | chr5.3:16603600-16603619 | MS.gene028078:intron | 60.0% |
!! | CCACTTGGGTTGGTCAGGTG+GGG | + | chr5.3:16603602-16603621 | MS.gene028078:intron | 60.0% |
!! | CCCACTTGGGTTGGTCAGGT+GGG | + | chr5.3:16603601-16603620 | MS.gene028078:intron | 60.0% |
!! | TTGGGTTGGTCAGGTGGGGT+TGG | + | chr5.3:16603606-16603625 | MS.gene028078:intron | 60.0% |
CCCCACCTGACCAACCCAAG+TGG | - | chr5.3:16603605-16603624 | None:intergenic | 65.0% | |
CCGCCGGTCCCTGATTTCTG+TGG | - | chr5.3:16603188-16603207 | None:intergenic | 65.0% | |
CTTCATGCGGCGGCAAGGTC+CGG | + | chr5.3:16603212-16603231 | MS.gene028078:CDS | 65.0% | |
CGGACCTTGCCGCCGCATGA+AGG | - | chr5.3:16603214-16603233 | None:intergenic | 70.0% | |
GACCGGCGGCGACCTTCATG+CGG | + | chr5.3:16603199-16603218 | MS.gene028078:CDS | 70.0% | |
GCGACCTTCATGCGGCGGCA+AGG | + | chr5.3:16603207-16603226 | MS.gene028078:CDS | 70.0% | |
CGCCGCATGAAGGTCGCCGC+CGG | - | chr5.3:16603204-16603223 | None:intergenic | 75.0% | |
CGGCGGCGACCTTCATGCGG+CGG | + | chr5.3:16603202-16603221 | MS.gene028078:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 16603170 | 16605467 | 16603170 | ID=MS.gene028078 |
chr5.3 | mRNA | 16603170 | 16605467 | 16603170 | ID=MS.gene028078.t1;Parent=MS.gene028078 |
chr5.3 | exon | 16603170 | 16603312 | 16603170 | ID=MS.gene028078.t1.exon1;Parent=MS.gene028078.t1 |
chr5.3 | CDS | 16603170 | 16603312 | 16603170 | ID=cds.MS.gene028078.t1;Parent=MS.gene028078.t1 |
chr5.3 | exon | 16604813 | 16605467 | 16604813 | ID=MS.gene028078.t1.exon2;Parent=MS.gene028078.t1 |
chr5.3 | CDS | 16604813 | 16605467 | 16604813 | ID=cds.MS.gene028078.t1;Parent=MS.gene028078.t1 |
Gene Sequence |
Protein sequence |