AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028080.t1 MTR_5g026800 96.578 263 9 0 1 263 1 263 0.0 514
MS.gene028080.t1 MTR_6g027840 37.600 125 77 1 12 136 365 488 1.06e-16 79.7
MS.gene028080.t1 MTR_5g043640 35.099 151 93 2 15 160 58 208 1.09e-16 77.4
MS.gene028080.t1 MTR_5g043640 32.192 146 98 1 15 160 94 238 4.02e-13 67.8
MS.gene028080.t1 MTR_6g088470 32.164 171 100 5 3 160 8 175 2.16e-15 75.9
MS.gene028080.t1 MTR_3g088410 34.127 126 82 1 15 140 24 148 2.44e-15 72.0
MS.gene028080.t1 MTR_5g022050 31.973 147 97 2 15 159 263 408 1.55e-14 73.2
MS.gene028080.t1 MTR_5g023090 30.657 137 94 1 15 151 297 432 1.32e-13 70.5
MS.gene028080.t1 MTR_1g100797 35.484 124 78 2 9 130 8 131 9.54e-13 68.2
MS.gene028080.t1 MTR_8g056020 31.967 122 82 1 18 139 236 356 5.42e-12 65.5
MS.gene028080.t1 MTR_7g117620 34.756 164 98 5 15 169 120 283 6.25e-12 65.5
MS.gene028080.t1 MTR_4g062100 30.493 223 128 7 8 204 101 322 9.75e-12 65.1
MS.gene028080.t1 MTR_2g048680 29.139 151 104 2 4 152 139 288 1.76e-11 63.5
MS.gene028080.t1 MTR_6g088470 32.258 124 76 3 3 121 8 128 2.30e-11 63.9
MS.gene028080.t1 MTR_0020s0130 35.484 124 78 2 9 130 8 131 4.09e-11 63.2
MS.gene028080.t1 MTR_7g100430 32.886 149 96 4 8 152 154 302 5.01e-11 62.8
MS.gene028080.t1 MTR_4g021880 29.940 167 95 5 15 160 136 301 6.92e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028080.t1 AT4G19150 56.225 249 78 3 14 261 19 237 1.00e-82 248
MS.gene028080.t1 AT4G19150 51.402 214 73 3 49 261 31 214 1.30e-58 186
MS.gene028080.t1 AT5G12320 33.858 127 83 1 14 140 14 139 3.01e-17 76.6
MS.gene028080.t1 AT5G40160 37.008 127 80 0 25 151 165 291 6.04e-17 79.3
MS.gene028080.t1 AT2G03430 34.667 150 94 2 15 160 51 200 2.13e-16 76.6
MS.gene028080.t1 AT2G03430 34.752 141 84 4 37 169 39 179 1.88e-11 62.8
MS.gene028080.t1 AT2G03430 30.968 155 99 2 15 162 87 240 2.80e-11 62.4
MS.gene028080.t1 AT5G66055 34.228 149 91 4 15 159 264 409 2.22e-16 78.6
MS.gene028080.t1 AT3G24530 35.417 144 84 3 15 149 19 162 2.25e-15 75.9
MS.gene028080.t1 AT5G40160 35.398 113 73 0 31 143 171 283 1.02e-13 70.1
MS.gene028080.t1 AT2G31820 35.211 142 89 3 15 153 228 369 2.98e-13 69.7
MS.gene028080.t1 AT1G05640 37.255 153 86 5 8 153 184 333 7.40e-13 68.6
MS.gene028080.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene028080.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene028080.t1 AT5G02620 33.557 149 95 4 8 152 87 235 6.85e-12 65.5
MS.gene028080.t1 AT3G09890 32.692 156 97 2 14 161 42 197 8.52e-12 63.2
MS.gene028080.t1 AT2G28840 33.333 174 80 8 15 160 50 215 9.11e-12 65.1
MS.gene028080.t1 AT5G02620 33.557 149 95 4 8 152 87 235 9.31e-12 65.1
MS.gene028080.t1 AT5G02620 33.557 149 95 4 8 152 87 235 9.31e-12 65.1
MS.gene028080.t1 AT5G53470 32.374 139 56 3 15 151 222 324 1.14e-11 64.3
MS.gene028080.t1 AT5G07270 35.484 124 78 2 9 130 8 131 1.86e-11 64.3
MS.gene028080.t1 AT2G26650 31.081 148 99 2 4 151 544 688 2.27e-11 64.3
MS.gene028080.t1 AT5G60070 34.416 154 88 5 8 152 104 253 2.75e-11 63.9
MS.gene028080.t1 AT5G20350 32.203 177 102 6 15 183 102 268 6.59e-11 62.8
MS.gene028080.t1 AT3G09550 34.667 150 94 4 7 152 173 322 6.85e-11 62.8
MS.gene028080.t1 AT3G09550 34.667 150 94 4 7 152 173 322 6.85e-11 62.8
MS.gene028080.t1 AT3G09550 34.667 150 94 4 7 152 180 329 7.76e-11 62.4
MS.gene028080.t1 AT4G27780 28.873 142 63 3 15 154 237 342 9.92e-11 61.6

Find 72 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTCTTCAGGTGCTTT+TGG 0.220900 5.4:-17709650 None:intergenic
AGTGAGACTTGCCCCTTTCT+TGG 0.248840 5.4:-17709471 None:intergenic
AAACTCTTCACAACCGAAAA+AGG 0.282462 5.4:+17709796 MS.gene028080:CDS
GTCCCTGATTTCTGTGGATT+TGG 0.294656 5.4:-17707588 None:intergenic
CAACCTACAGGGTCTCTTCT+TGG 0.315944 5.4:-17709859 None:intergenic
GCCTTTGGATCAGATTCTTC+AGG 0.317269 5.4:-17709659 None:intergenic
TGCTTCTGCTATGGATGATA+TGG 0.344938 5.4:+17709295 MS.gene028080:CDS
CTTGGACATCATCTGAACTT+TGG 0.372832 5.4:-17709841 None:intergenic
TAATTGAGGATACGGTGTTC+TGG 0.393428 5.4:-17707712 None:intergenic
CTTCATGCGGCGGCAAGGTC+CGG 0.398665 5.4:+17707621 MS.gene028080:CDS
AAACCAAATCCACAGAAATC+AGG 0.401690 5.4:+17707585 MS.gene028080:CDS
TGCTGTTCAAGGTTCCCATC+TGG 0.407073 5.4:+17709430 MS.gene028080:CDS
CCTAAAGAGGATGATGCCTT+TGG 0.430235 5.4:-17709674 None:intergenic
GTCAAGTACTTATCCAAGAA+AGG 0.442200 5.4:+17709458 MS.gene028080:CDS
CCAAAGGCATCATCCTCTTT+AGG 0.445769 5.4:+17709674 MS.gene028080:CDS
CGCCGCATGAAGGTCGCCGC+CGG 0.459979 5.4:-17707610 None:intergenic
TTCACTACTCAAATTACCTT+CGG 0.461363 5.4:-17709699 None:intergenic
GTTCGAACTCTGGTTTCAGC+TGG 0.463456 5.4:+17709359 MS.gene028080:CDS
TGTTCTGGAGTGCTTATCTC+TGG 0.471688 5.4:-17707697 None:intergenic
CTCACTATCAAGACAAAGGC+AGG 0.472180 5.4:+17709488 MS.gene028080:CDS
TCAAGTACTTATCCAAGAAA+GGG 0.475565 5.4:+17709459 MS.gene028080:CDS
TTTAGAAGTTGTTCGAACTC+TGG 0.476082 5.4:+17709349 MS.gene028080:CDS
CCGAGTAGCGGCTTTGAAAG+AGG 0.477525 5.4:-17709384 None:intergenic
TGGTGAGAAAGAGAAGAGGA+AGG 0.484213 5.4:+17709751 MS.gene028080:CDS
CATTGGTAGCAAGATCCAAT+GGG 0.488232 5.4:-17709517 None:intergenic
TTTGAAAAGTCAGCTAAGAA+TGG 0.495928 5.4:+17709566 MS.gene028080:CDS
AAAGGAGCGGACTTCATCAT+TGG 0.515117 5.4:-17709534 None:intergenic
GTGCTTATCTCTGGAATTGA+CGG 0.516931 5.4:-17707688 None:intergenic
GGGTAATGAAGATGATGAAA+GGG 0.517277 5.4:+17709772 MS.gene028080:CDS
TCTTCATCAACAGTAGCTGC+AGG 0.519575 5.4:-17709725 None:intergenic
CCTTGAACAGCAAAATGTAA+TGG 0.521701 5.4:-17709419 None:intergenic
ATTACCTTCGGAGCCTAAAG+AGG 0.537106 5.4:-17709687 None:intergenic
CGGACCTTGCCGCCGCATGA+AGG 0.544030 5.4:-17707620 None:intergenic
GCGACCTTCATGCGGCGGCA+AGG 0.544925 5.4:+17707616 MS.gene028080:CDS
CCTCTTTCAAAGCCGCTACT+CGG 0.546704 5.4:+17709384 MS.gene028080:CDS
AGGGTAATGAAGATGATGAA+AGG 0.548445 5.4:+17709771 MS.gene028080:CDS
TTCAAAGCCGCTACTCGGAA+AGG 0.550795 5.4:+17709389 MS.gene028080:CDS
CATCATCTGAACTTTGGAGA+TGG 0.551884 5.4:-17709835 None:intergenic
TGATGTCGGTGCTTCTGCTA+TGG 0.553962 5.4:+17709286 MS.gene028080:CDS
TCATTGGTAGCAAGATCCAA+TGG 0.558682 5.4:-17709518 None:intergenic
ACCTGAAGAATCTGATCCAA+AGG 0.559801 5.4:+17709658 MS.gene028080:CDS
CATCAGCTTTATTCTTGCAG+AGG 0.562565 5.4:-17709268 None:intergenic
CCGCCGGTCCCTGATTTCTG+TGG 0.567523 5.4:-17707594 None:intergenic
AACCAAATCCACAGAAATCA+GGG 0.569694 5.4:+17707586 MS.gene028080:CDS
CGGCGGCGACCTTCATGCGG+CGG 0.573003 5.4:+17707611 MS.gene028080:CDS
AAAGTGGTGAGAAAGAGAAG+AGG 0.577048 5.4:+17709747 MS.gene028080:CDS
GGTGAGAAAGAGAAGAGGAA+GGG 0.577937 5.4:+17709752 MS.gene028080:CDS
TCATCCTCTTTAGGCTCCGA+AGG 0.581554 5.4:+17709683 MS.gene028080:CDS
GACCGGCGGCGACCTTCATG+CGG 0.583532 5.4:+17707608 MS.gene028080:CDS
AGTACTTGACAAGTTCCAGA+TGG 0.589385 5.4:-17709445 None:intergenic
CTGTGCCGCGAAGTGTATTG+CGG 0.594539 5.4:-17709318 None:intergenic
TATGGCCGCAATACACTTCG+CGG 0.596559 5.4:+17709313 MS.gene028080:CDS
TCTCTGGAATTGACGGCCAG+AGG 0.598799 5.4:-17707681 None:intergenic
ATACACTTCGCGGCACAGAA+AGG 0.600317 5.4:+17709323 MS.gene028080:CDS
CTGAACTGTAATCAGATCAC+CGG 0.610660 5.4:-17707640 None:intergenic
GAAGTCCGCTCCTTTCTAGA+GGG 0.610884 5.4:+17709542 MS.gene028080:CDS
AAAGGCAGGAAAGACCCCAT+TGG 0.612270 5.4:+17709502 MS.gene028080:CDS
AAGAACGAAGATAAAACTGA+AGG 0.613960 5.4:+17709596 MS.gene028080:CDS
AATCCACAGAAATCAGGGAC+CGG 0.618128 5.4:+17707591 MS.gene028080:CDS
TGAAGTCCGCTCCTTTCTAG+AGG 0.622198 5.4:+17709541 MS.gene028080:CDS
CAAGTACTTATCCAAGAAAG+GGG 0.626997 5.4:+17709460 MS.gene028080:CDS
CAAATCCCTCTAGAAAGGAG+CGG 0.629038 5.4:-17709547 None:intergenic
GCTACTGTTGATGAAGAAAG+TGG 0.635967 5.4:+17709731 MS.gene028080:CDS
TGCAAGAATAAAGCTGATGT+CGG 0.636789 5.4:+17709272 MS.gene028080:CDS
GTACTTGACAAGTTCCAGAT+GGG 0.651589 5.4:-17709444 None:intergenic
TCATCAACAGTAGCTGCAGG+AGG 0.660427 5.4:-17709722 None:intergenic
AGTCACGCCTTTCCGAGTAG+CGG 0.663740 5.4:-17709396 None:intergenic
AAGTCTCACTATCAAGACAA+AGG 0.667954 5.4:+17709484 MS.gene028080:CDS
CCACAGAAATCAGGGACCGG+CGG 0.674685 5.4:+17707594 MS.gene028080:CDS
TGTCCAAGAAGAGACCCTGT+AGG 0.707431 5.4:+17709856 MS.gene028080:CDS
TATGCCTCTACCAACCTACA+GGG 0.721432 5.4:-17709870 None:intergenic
ATTGGTAGCAAGATCCAATG+GGG 0.757229 5.4:-17709516 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTATATATTTCTTTCTA+AGG + chr5.4:17708429-17708448 MS.gene028080:intron 15.0%
!! ATAATATACAGTAACAAAAT+TGG - chr5.4:17708645-17708664 None:intergenic 15.0%
!! ATTATTGTAAAAATATCTAC+AGG + chr5.4:17708569-17708588 MS.gene028080:intron 15.0%
!! TAATATACAGTAACAAAATT+GGG - chr5.4:17708644-17708663 None:intergenic 15.0%
!! TCAAATAAATTAATCCAAAT+AGG + chr5.4:17708284-17708303 MS.gene028080:intron 15.0%
!!! ACATTACTTTTAAAATATCT+GGG - chr5.4:17708414-17708433 None:intergenic 15.0%
!!! TACATTACTTTTAAAATATC+TGG - chr5.4:17708415-17708434 None:intergenic 15.0%
!! AATATACAGTAACAAAATTG+GGG - chr5.4:17708643-17708662 None:intergenic 20.0%
!! CTTATGTATACTATTGTAAA+AGG + chr5.4:17707870-17707889 MS.gene028080:intron 20.0%
!! GTTTCTTTAACATACATATT+TGG + chr5.4:17709055-17709074 MS.gene028080:intron 20.0%
!! TTAAGGAAGATAATTTAGTT+TGG + chr5.4:17708981-17709000 MS.gene028080:intron 20.0%
!!! ACAAGAAAATTTTAATTCTC+AGG - chr5.4:17708728-17708747 None:intergenic 20.0%
!!! ATTACTTTTAAAATATCTGG+GGG - chr5.4:17708412-17708431 None:intergenic 20.0%
!!! ATTTTACATGATTGTATTCT+GGG + chr5.4:17708947-17708966 MS.gene028080:intron 20.0%
!!! CATTACTTTTAAAATATCTG+GGG - chr5.4:17708413-17708432 None:intergenic 20.0%
! AAAATGAAAATCACACATGA+AGG + chr5.4:17708498-17708517 MS.gene028080:intron 25.0%
! AAATGAAAATCACACATGAA+GGG + chr5.4:17708499-17708518 MS.gene028080:intron 25.0%
! AATATGCATGTTTCTTTCTA+AGG - chr5.4:17708552-17708571 None:intergenic 25.0%
! ATAAGGAAGAATACTTTATC+TGG + chr5.4:17709124-17709143 MS.gene028080:intron 25.0%
! ATATACAGTAACAAAATTGG+GGG - chr5.4:17708642-17708661 None:intergenic 25.0%
! ATCATGTAAAATGTAGTCTA+TGG - chr5.4:17708939-17708958 None:intergenic 25.0%
! CATTAATGATAACCATGTAA+TGG - chr5.4:17708312-17708331 None:intergenic 25.0%
! CATTACATGGTTATCATTAA+TGG + chr5.4:17708310-17708329 MS.gene028080:intron 25.0%
! TAAGGAAGAATACTTTATCT+GGG + chr5.4:17709125-17709144 MS.gene028080:intron 25.0%
! TGAAGAGTTATGAAAATAAG+CGG + chr5.4:17707956-17707975 MS.gene028080:intron 25.0%
! TGTAGTCTATTGTTCAAATT+TGG - chr5.4:17709209-17709228 None:intergenic 25.0%
!! ATTTTAGATGACTGTATTCT+GGG + chr5.4:17709090-17709109 MS.gene028080:intron 25.0%
!! CATTTTACATGATTGTATTC+TGG + chr5.4:17708946-17708965 MS.gene028080:intron 25.0%
!! GAAGTTACTAGATTTTTCTT+TGG + chr5.4:17708869-17708888 MS.gene028080:intron 25.0%
!! GTCATCTAAAATATAGTCTA+TGG - chr5.4:17709082-17709101 None:intergenic 25.0%
!! TTTTACATGATTGTATTCTG+GGG + chr5.4:17708948-17708967 MS.gene028080:intron 25.0%
!!! AATTTTGATTTCAAATCCTC+TGG + chr5.4:17707665-17707684 MS.gene028080:CDS 25.0%
!!! TATTTTAGATGACTGTATTC+TGG + chr5.4:17709089-17709108 MS.gene028080:intron 25.0%
AAGAACGAAGATAAAACTGA+AGG + chr5.4:17709596-17709615 MS.gene028080:CDS 30.0%
AGAGGTTTAAACCAAAAGTT+GGG + chr5.4:17708334-17708353 MS.gene028080:intron 30.0%
AGTTATGACATACAAGAGTT+TGG + chr5.4:17708383-17708402 MS.gene028080:intron 30.0%
ATAAGGAGGAAAACTTTATC+TGG + chr5.4:17708843-17708862 MS.gene028080:intron 30.0%
GATGACATGAAAAAGAGTTA+GGG - chr5.4:17707747-17707766 None:intergenic 30.0%
GGATGTTAAAGAAAACAACA+AGG - chr5.4:17709188-17709207 None:intergenic 30.0%
GTTATGACATACAAGAGTTT+GGG + chr5.4:17708384-17708403 MS.gene028080:intron 30.0%
TAAGGAGGAAAACTTTATCT+GGG + chr5.4:17708844-17708863 MS.gene028080:intron 30.0%
TCAAGTACTTATCCAAGAAA+GGG + chr5.4:17709459-17709478 MS.gene028080:CDS 30.0%
TGATGACATGAAAAAGAGTT+AGG - chr5.4:17707748-17707767 None:intergenic 30.0%
TGGTAAAGTTAGTAGTAACT+GGG + chr5.4:17709001-17709020 MS.gene028080:intron 30.0%
TTCACTACTCAAATTACCTT+CGG - chr5.4:17709702-17709721 None:intergenic 30.0%
TTGGTAAAGTTAGTAGTAAC+TGG + chr5.4:17709000-17709019 MS.gene028080:intron 30.0%
TTTGAAAAGTCAGCTAAGAA+TGG + chr5.4:17709566-17709585 MS.gene028080:CDS 30.0%
! ATGCTATTTATCTGCTTGTT+AGG + chr5.4:17708687-17708706 MS.gene028080:intron 30.0%
! TACATTTAGCTGCATTTTCT+GGG + chr5.4:17709225-17709244 MS.gene028080:CDS 30.0%
! TGCTATTTATCTGCTTGTTA+GGG + chr5.4:17708688-17708707 MS.gene028080:intron 30.0%
! TTCTTCGTTTTCTTTTGGAT+CGG - chr5.4:17709624-17709643 None:intergenic 30.0%
!! TGTGTTCTAGAGAGAAAATA+AGG + chr5.4:17708826-17708845 MS.gene028080:intron 30.0%
!! TTTTTGAAAGCCTAGTCTAA+GGG - chr5.4:17708192-17708211 None:intergenic 30.0%
!!! TTTTTTGAAAGCCTAGTCTA+AGG - chr5.4:17708193-17708212 None:intergenic 30.0%
AAACCAAATCCACAGAAATC+AGG + chr5.4:17707585-17707604 MS.gene028080:CDS 35.0%
AAACTCTTCACAACCGAAAA+AGG + chr5.4:17709796-17709815 MS.gene028080:CDS 35.0%
AAATCACACATGAAGGGATA+TGG + chr5.4:17708505-17708524 MS.gene028080:intron 35.0%
AAATGTAGTCTATGGTCCAA+AGG - chr5.4:17708931-17708950 None:intergenic 35.0%
AACCAAATCCACAGAAATCA+GGG + chr5.4:17707586-17707605 MS.gene028080:CDS 35.0%
AAGGAGGAAAACTTTATCTG+GGG + chr5.4:17708845-17708864 MS.gene028080:intron 35.0%
AAGTCTCACTATCAAGACAA+AGG + chr5.4:17709484-17709503 MS.gene028080:CDS 35.0%
ACCCATTAAAAGCTAAAGCA+AGG - chr5.4:17708125-17708144 None:intergenic 35.0%
AGGGTAATGAAGATGATGAA+AGG + chr5.4:17709771-17709790 MS.gene028080:CDS 35.0%
ATGGTTATCATTAATGGCAG+AGG + chr5.4:17708316-17708335 MS.gene028080:intron 35.0%
ATTGAACCCCTCGAATTAAT+CGG + chr5.4:17708166-17708185 MS.gene028080:intron 35.0%
CAAGTACTTATCCAAGAAAG+GGG + chr5.4:17709460-17709479 MS.gene028080:CDS 35.0%
CAGAGGTTTAAACCAAAAGT+TGG + chr5.4:17708333-17708352 MS.gene028080:intron 35.0%
CCTTGAACAGCAAAATGTAA+TGG - chr5.4:17709422-17709441 None:intergenic 35.0%
GACTGTATTCTGGGTATATT+GGG + chr5.4:17709099-17709118 MS.gene028080:intron 35.0%
GAGGTTTAAACCAAAAGTTG+GGG + chr5.4:17708335-17708354 MS.gene028080:intron 35.0%
GCACATCTTAGTTATGACAT+AGG - chr5.4:17708607-17708626 None:intergenic 35.0%
GGGTAATGAAGATGATGAAA+GGG + chr5.4:17709772-17709791 MS.gene028080:CDS 35.0%
GTCAAGTACTTATCCAAGAA+AGG + chr5.4:17709458-17709477 MS.gene028080:CDS 35.0%
GTTTCTTCAACAATCACCTT+TGG + chr5.4:17708912-17708931 MS.gene028080:intron 35.0%
TAAGCTGCAAATAAGCGTTA+GGG - chr5.4:17707823-17707842 None:intergenic 35.0%
TCATAACTAAGATGTGCCAT+TGG + chr5.4:17708610-17708629 MS.gene028080:intron 35.0%
TCTGGGGAAAATTGGAATTA+AGG + chr5.4:17708964-17708983 MS.gene028080:intron 35.0%
TCTGGGTATATTGGGAAATA+AGG + chr5.4:17709107-17709126 MS.gene028080:intron 35.0%
TGACTGTATTCTGGGTATAT+TGG + chr5.4:17709098-17709117 MS.gene028080:intron 35.0%
TGCAAGAATAAAGCTGATGT+CGG + chr5.4:17709272-17709291 MS.gene028080:CDS 35.0%
TTTAGAAGTTGTTCGAACTC+TGG + chr5.4:17709349-17709368 MS.gene028080:CDS 35.0%
! CGAAGTAACTGAGTTTTTCT+TGG + chr5.4:17709148-17709167 MS.gene028080:intron 35.0%
! CTACATTTAGCTGCATTTTC+TGG + chr5.4:17709224-17709243 MS.gene028080:CDS 35.0%
! GATTGTATTCTGGGGAAAAT+TGG + chr5.4:17708956-17708975 MS.gene028080:intron 35.0%
! TCGGATTCTTCGTTTTCTTT+TGG - chr5.4:17709629-17709648 None:intergenic 35.0%
! TTTTTGCTCCATGTTTAAGG+TGG - chr5.4:17708473-17708492 None:intergenic 35.0%
!! ATGGACTAGTCTATCGAAAT+TGG - chr5.4:17708096-17708115 None:intergenic 35.0%
!! CTTTTCAAATCCCTCTAGAA+AGG - chr5.4:17709555-17709574 None:intergenic 35.0%
!! GTTCTAGAGAGAAAATAAGG+AGG + chr5.4:17708829-17708848 MS.gene028080:intron 35.0%
!! TGCGTTGATAATTGAGGATA+CGG - chr5.4:17707723-17707742 None:intergenic 35.0%
!! TGCTTTTTGCTCCATGTTTA+AGG - chr5.4:17708476-17708495 None:intergenic 35.0%
!!! AGCCTTGCTTTAGCTTTTAA+TGG + chr5.4:17708120-17708139 MS.gene028080:intron 35.0%
!!! CCATTACATTTTGCTGTTCA+AGG + chr5.4:17709419-17709438 MS.gene028080:CDS 35.0%
!!! GCCTTGCTTTAGCTTTTAAT+GGG + chr5.4:17708121-17708140 MS.gene028080:intron 35.0%
AAAGTGGTGAGAAAGAGAAG+AGG + chr5.4:17709747-17709766 MS.gene028080:CDS 40.0%
AAATTGGGGGTGATAACCAA+TGG - chr5.4:17708629-17708648 None:intergenic 40.0%
AATTAATCGGCCCTTAGACT+AGG + chr5.4:17708179-17708198 MS.gene028080:intron 40.0%
ACCATGTAATGGTGCCTATT+TGG - chr5.4:17708301-17708320 None:intergenic 40.0%
ACCTGAAGAATCTGATCCAA+AGG + chr5.4:17709658-17709677 MS.gene028080:CDS 40.0%
AGTACTTGACAAGTTCCAGA+TGG - chr5.4:17709448-17709467 None:intergenic 40.0%
AGTAGTAACTGGGTTTCACT+TGG + chr5.4:17709011-17709030 MS.gene028080:intron 40.0%
AGTTATGACATAGGAGAGCT+AGG - chr5.4:17708598-17708617 None:intergenic 40.0%
CTGAACTGTAATCAGATCAC+CGG - chr5.4:17707643-17707662 None:intergenic 40.0%
CTTCTGCATGTATGTGTCTA+TGG + chr5.4:17708774-17708793 MS.gene028080:intron 40.0%
CTTGGACATCATCTGAACTT+TGG - chr5.4:17709844-17709863 None:intergenic 40.0%
GTAAGCTGCAAATAAGCGTT+AGG - chr5.4:17707824-17707843 None:intergenic 40.0%
GTACTTGACAAGTTCCAGAT+GGG - chr5.4:17709447-17709466 None:intergenic 40.0%
GTAGTAACTGGGTTTCACTT+GGG + chr5.4:17709012-17709031 MS.gene028080:intron 40.0%
GTTATGACATAGGAGAGCTA+GGG - chr5.4:17708597-17708616 None:intergenic 40.0%
TAATTGAGGATACGGTGTTC+TGG - chr5.4:17707715-17707734 None:intergenic 40.0%
TCCAAATAGGCACCATTACA+TGG + chr5.4:17708297-17708316 MS.gene028080:intron 40.0%
TGCTTCTGCTATGGATGATA+TGG + chr5.4:17709295-17709314 MS.gene028080:CDS 40.0%
TTAAACCAAAAGTTGGGGCA+TGG + chr5.4:17708340-17708359 MS.gene028080:intron 40.0%
! ATTGGTAGCAAGATCCAATG+GGG - chr5.4:17709519-17709538 None:intergenic 40.0%
! CATCATCTGAACTTTGGAGA+TGG - chr5.4:17709838-17709857 None:intergenic 40.0%
! CATTGGTAGCAAGATCCAAT+GGG - chr5.4:17709520-17709539 None:intergenic 40.0%
! GCTACTGTTGATGAAGAAAG+TGG + chr5.4:17709731-17709750 MS.gene028080:CDS 40.0%
! TCAGATTCTTCAGGTGCTTT+TGG - chr5.4:17709653-17709672 None:intergenic 40.0%
! TCATTGGTAGCAAGATCCAA+TGG - chr5.4:17709521-17709540 None:intergenic 40.0%
! TTCTTCAGGTGCTTTTGGAT+CGG - chr5.4:17709648-17709667 None:intergenic 40.0%
! TTTAATGGGTCTCTTGCAAG+TGG + chr5.4:17708135-17708154 MS.gene028080:intron 40.0%
!! CATCAGCTTTATTCTTGCAG+AGG - chr5.4:17709271-17709290 None:intergenic 40.0%
!! GTGCTTATCTCTGGAATTGA+CGG - chr5.4:17707691-17707710 None:intergenic 40.0%
!! TAGGGTTGCGTTGATAATTG+AGG - chr5.4:17707729-17707748 None:intergenic 40.0%
AATCCACAGAAATCAGGGAC+CGG + chr5.4:17707591-17707610 MS.gene028080:CDS 45.0%
AGCTAAAGCAAGGCTCTGTA+TGG - chr5.4:17708115-17708134 None:intergenic 45.0%
ATAAGCTAACCCACTTGGGT+TGG + chr5.4:17708001-17708020 MS.gene028080:intron 45.0%
ATCGAACCTAAGACCTTGAG+AGG - chr5.4:17708062-17708081 None:intergenic 45.0%
ATGCCATAAGCTAACCCACT+TGG + chr5.4:17707996-17708015 MS.gene028080:intron 45.0%
ATTACCTTCGGAGCCTAAAG+AGG - chr5.4:17709690-17709709 None:intergenic 45.0%
CCTAAAGAGGATGATGCCTT+TGG - chr5.4:17709677-17709696 None:intergenic 45.0%
CTAAGGGCCGATTAATTCGA+GGG - chr5.4:17708176-17708195 None:intergenic 45.0%
CTCACTATCAAGACAAAGGC+AGG + chr5.4:17709488-17709507 MS.gene028080:CDS 45.0%
GCCTTTGGATCAGATTCTTC+AGG - chr5.4:17709662-17709681 None:intergenic 45.0%
GGTGAGAAAGAGAAGAGGAA+GGG + chr5.4:17709752-17709771 MS.gene028080:CDS 45.0%
GTCCCTGATTTCTGTGGATT+TGG - chr5.4:17707591-17707610 None:intergenic 45.0%
GTCTTAGGTTCGATTACCTC+TGG + chr5.4:17708068-17708087 MS.gene028080:intron 45.0%
TAAGGGCCGATTAATTCGAG+GGG - chr5.4:17708175-17708194 None:intergenic 45.0%
TCTAAGGGCCGATTAATTCG+AGG - chr5.4:17708177-17708196 None:intergenic 45.0%
TCTATCGAAATTGGCACCAG+AGG - chr5.4:17708087-17708106 None:intergenic 45.0%
TCTTCATCAACAGTAGCTGC+AGG - chr5.4:17709728-17709747 None:intergenic 45.0%
TGCCATAAGCTAACCCACTT+GGG + chr5.4:17707997-17708016 MS.gene028080:intron 45.0%
TGGTGAGAAAGAGAAGAGGA+AGG + chr5.4:17709751-17709770 MS.gene028080:CDS 45.0%
! AAAGGAGCGGACTTCATCAT+TGG - chr5.4:17709537-17709556 None:intergenic 45.0%
! AGCTGAACTCTCGCCTTTTT+CGG - chr5.4:17709812-17709831 None:intergenic 45.0%
! CAAATCCCTCTAGAAAGGAG+CGG - chr5.4:17709550-17709569 None:intergenic 45.0%
! TGCTCCATGTTTAAGGTGGT+GGG - chr5.4:17708469-17708488 None:intergenic 45.0%
! TTGCTCCATGTTTAAGGTGG+TGG - chr5.4:17708470-17708489 None:intergenic 45.0%
!! AACCCAAGTGGGTTAGCTTA+TGG - chr5.4:17708002-17708021 None:intergenic 45.0%
!! CCAAAGGCATCATCCTCTTT+AGG + chr5.4:17709674-17709693 MS.gene028080:CDS 45.0%
!! TGTTCTGGAGTGCTTATCTC+TGG - chr5.4:17707700-17707719 None:intergenic 45.0%
AAAGGCAGGAAAGACCCCAT+TGG + chr5.4:17709502-17709521 MS.gene028080:CDS 50.0%
AACCAAAAGTTGGGGCATGG+AGG + chr5.4:17708343-17708362 MS.gene028080:intron 50.0%
AGTGAGACTTGCCCCTTTCT+TGG - chr5.4:17709474-17709493 None:intergenic 50.0%
ATACACTTCGCGGCACAGAA+AGG + chr5.4:17709323-17709342 MS.gene028080:CDS 50.0%
ATGGGTCTCTTGCAAGTGGA+CGG + chr5.4:17708139-17708158 MS.gene028080:intron 50.0%
CCTCTTTCAAAGCCGCTACT+CGG + chr5.4:17709384-17709403 MS.gene028080:CDS 50.0%
GAAGTCCGCTCCTTTCTAGA+GGG + chr5.4:17709542-17709561 MS.gene028080:CDS 50.0%
TATGGCCGCAATACACTTCG+CGG + chr5.4:17709313-17709332 MS.gene028080:CDS 50.0%
TCATCAACAGTAGCTGCAGG+AGG - chr5.4:17709725-17709744 None:intergenic 50.0%
TCATCCTCTTTAGGCTCCGA+AGG + chr5.4:17709683-17709702 MS.gene028080:CDS 50.0%
TGAAGTCCGCTCCTTTCTAG+AGG + chr5.4:17709541-17709560 MS.gene028080:CDS 50.0%
TGCTGTTCAAGGTTCCCATC+TGG + chr5.4:17709430-17709449 MS.gene028080:CDS 50.0%
TGTGGTCCTCTCAAGGTCTT+AGG + chr5.4:17708053-17708072 MS.gene028080:intron 50.0%
TTCAAAGCCGCTACTCGGAA+AGG + chr5.4:17709389-17709408 MS.gene028080:CDS 50.0%
! ATCCTCCATGCCCCAACTTT+TGG - chr5.4:17708348-17708367 None:intergenic 50.0%
! CTCCATGTTTAAGGTGGTGG+GGG - chr5.4:17708467-17708486 None:intergenic 50.0%
! GCTCCATGTTTAAGGTGGTG+GGG - chr5.4:17708468-17708487 None:intergenic 50.0%
! GTTCGAACTCTGGTTTCAGC+TGG + chr5.4:17709359-17709378 MS.gene028080:CDS 50.0%
! TGATGTCGGTGCTTCTGCTA+TGG + chr5.4:17709286-17709305 MS.gene028080:CDS 50.0%
! TGGTTTGGGATCTAGGAGTG+TGG + chr5.4:17708035-17708054 MS.gene028080:intron 50.0%
!! GAAGGGATATGGTGTTGTGC+TGG + chr5.4:17708516-17708535 MS.gene028080:intron 50.0%
AGTCACGCCTTTCCGAGTAG+CGG - chr5.4:17709399-17709418 None:intergenic 55.0%
CACCCCCACCACCTTAAACA+TGG + chr5.4:17708462-17708481 MS.gene028080:intron 55.0%
CTGTGCCGCGAAGTGTATTG+CGG - chr5.4:17709321-17709340 None:intergenic 55.0%
GTCTCTTGCAAGTGGACGGT+GGG + chr5.4:17708143-17708162 MS.gene028080:intron 55.0%
! CTAGGAGTGTGGTCCTCTCA+AGG + chr5.4:17708046-17708065 MS.gene028080:intron 55.0%
!! CCGAGTAGCGGCTTTGAAAG+AGG - chr5.4:17709387-17709406 None:intergenic 55.0%
!! CTAACCCACTTGGGTTGGTC+AGG + chr5.4:17708006-17708025 MS.gene028080:intron 55.0%
!! GTGGGGTTGGTTTGGGATCT+AGG + chr5.4:17708028-17708047 MS.gene028080:intron 55.0%
!! TCTCTGGAATTGACGGCCAG+AGG - chr5.4:17707684-17707703 None:intergenic 55.0%
!! TGGTCAGGTGGGGTTGGTTT+GGG + chr5.4:17708021-17708040 MS.gene028080:intron 55.0%
!! TTGGTCAGGTGGGGTTGGTT+TGG + chr5.4:17708020-17708039 MS.gene028080:intron 55.0%
CCACAGAAATCAGGGACCGG+CGG + chr5.4:17707594-17707613 MS.gene028080:CDS 60.0%
CCCACCTGACCAACCCAAGT+GGG - chr5.4:17708013-17708032 None:intergenic 60.0%
GGTCTCTTGCAAGTGGACGG+TGG + chr5.4:17708142-17708161 MS.gene028080:intron 60.0%
!! ACCCACTTGGGTTGGTCAGG+TGG + chr5.4:17708009-17708028 MS.gene028080:intron 60.0%
!! CCACTTGGGTTGGTCAGGTG+GGG + chr5.4:17708011-17708030 MS.gene028080:intron 60.0%
!! CCCACTTGGGTTGGTCAGGT+GGG + chr5.4:17708010-17708029 MS.gene028080:intron 60.0%
!! TTGGGTTGGTCAGGTGGGGT+TGG + chr5.4:17708015-17708034 MS.gene028080:intron 60.0%
CCCCACCTGACCAACCCAAG+TGG - chr5.4:17708014-17708033 None:intergenic 65.0%
CCGCCGGTCCCTGATTTCTG+TGG - chr5.4:17707597-17707616 None:intergenic 65.0%
CTTCATGCGGCGGCAAGGTC+CGG + chr5.4:17707621-17707640 MS.gene028080:CDS 65.0%
CGGACCTTGCCGCCGCATGA+AGG - chr5.4:17707623-17707642 None:intergenic 70.0%
GACCGGCGGCGACCTTCATG+CGG + chr5.4:17707608-17707627 MS.gene028080:CDS 70.0%
GCGACCTTCATGCGGCGGCA+AGG + chr5.4:17707616-17707635 MS.gene028080:CDS 70.0%
CGCCGCATGAAGGTCGCCGC+CGG - chr5.4:17707613-17707632 None:intergenic 75.0%
CGGCGGCGACCTTCATGCGG+CGG + chr5.4:17707611-17707630 MS.gene028080:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 17707579 17709877 17707579 ID=MS.gene028080
chr5.4 mRNA 17707579 17709877 17707579 ID=MS.gene028080.t1;Parent=MS.gene028080
chr5.4 exon 17707579 17707721 17707579 ID=MS.gene028080.t1.exon1;Parent=MS.gene028080.t1
chr5.4 CDS 17707579 17707721 17707579 ID=cds.MS.gene028080.t1;Parent=MS.gene028080.t1
chr5.4 exon 17709223 17709877 17709223 ID=MS.gene028080.t1.exon2;Parent=MS.gene028080.t1
chr5.4 CDS 17709223 17709877 17709223 ID=cds.MS.gene028080.t1;Parent=MS.gene028080.t1
Gene Sequence

>MS.gene028080

ATGGGTAAACCAAATCCACAGAAATCAGGGACCGGCGGCGACCTTCATGCGGCGGCAAGGTCCGGTGATCTGATTACAGTTCAGTCAATTTTGATTTCAAATCCTCTGGCCGTCAATTCCAGAGATAAGCACTCCAGAACACCGTATCCTCAATTATCAACGCAACCCTAACTCTTTTTCATGTCATCATTCATTCAATTTATTTCATTAGCTTTTATGTCTTTTCGTGTCATGAATGCAACCCTAACGCTTATTTGCAGCTTACAGCACAAGCGCTGATCATTTTAAATGCTTATGTATACTATTGTAAAAGGTAAAATTCAGTTTAAATTGTTTTTGTATAAGTTGTAAGTTGTTTTCGTATAAGCGCTTATCTTTGAAGAGTTATGAAAATAAGCGGAAAATAGCTTATGAATAATGCCATAAGCTAACCCACTTGGGTTGGTCAGGTGGGGTTGGTTTGGGATCTAGGAGTGTGGTCCTCTCAAGGTCTTAGGTTCGATTACCTCTGGTGCCAATTTCGATAGACTAGTCCATACAGAGCCTTGCTTTAGCTTTTAATGGGTCTCTTGCAAGTGGACGGTGGGATTGAACCCCTCGAATTAATCGGCCCTTAGACTAGGCTTTCAAAAAAAGAACAATGTCATAAGCTATTTTCATAAATTCTCTCAAACAGTCTCACAAAACTTATGTCTGTTGATAAACTCAAATAAATTAATCCAAATAGGCACCATTACATGGTTATCATTAATGGCAGAGGTTTAAACCAAAAGTTGGGGCATGGAGGATCTAATCTTAGTTATGAGTTATGACATACAAGAGTTTGGGCTCCCCCAGATATTTTAAAAGTAATGTATATATTTCTTTCTAAGGTAGTTGAGTTCACCCCCACCACCTTAAACATGGAGCAAAAAGCAAGAAAATGAAAATCACACATGAAGGGATATGGTGTTGTGCTGGTATAAATATACCTTAGAAAGAAACATGCATATTATTGTAAAAATATCTACAGGAACCCTAGCTCTCCTATGTCATAACTAAGATGTGCCATTGGTTATCACCCCCAATTTTGTTACTGTATATTATTCTCTCATTGTACTGAACTGAAATGCTATTTATCTGCTTGTTAGGGTATGCTTGCATGATCCTGAGAATTAAAATTTTCTTGTAGATATGAGTTGTGCTTCATGTTTTGCTTCTGCATGTATGTGTCTATGGATAGTTGACTATTTATTCAGTTACATGATTGTGTTCTAGAGAGAAAATAAGGAGGAAAACTTTATCTGGGGTGAAGTTACTAGATTTTTCTTTGGAATTTTAGCATTGCAATACTGTTTCTTCAACAATCACCTTTGGACCATAGACTACATTTTACATGATTGTATTCTGGGGAAAATTGGAATTAAGGAAGATAATTTAGTTTGGTAAAGTTAGTAGTAACTGGGTTTCACTTGGGAATTCTAGCATTGTCATATTGTTTCTTTAACATACATATTTGGACCATAGACTATATTTTAGATGACTGTATTCTGGGTATATTGGGAAATAAGGAAGAATACTTTATCTGGGCGAAGTAACTGAGTTTTTCTTGGTAATTCTAGCATTGCCTTGTTGTTTTCTTTAACATCCAAATTTGAACAATAGACTACATTTAGCTGCATTTTCTGGGCAAACAGAAGTAGTCAGTTACCTCTGCAAGAATAAAGCTGATGTCGGTGCTTCTGCTATGGATGATATGGCCGCAATACACTTCGCGGCACAGAAAGGACATTTAGAAGTTGTTCGAACTCTGGTTTCAGCTGGTGCCTCTTTCAAAGCCGCTACTCGGAAAGGCGTGACTCCATTACATTTTGCTGTTCAAGGTTCCCATCTGGAACTTGTCAAGTACTTATCCAAGAAAGGGGCAAGTCTCACTATCAAGACAAAGGCAGGAAAGACCCCATTGGATCTTGCTACCAATGATGAAGTCCGCTCCTTTCTAGAGGGATTTGAAAAGTCAGCTAAGAATGGAGAGTCAAAGAACGAAGATAAAACTGAAGGTTCCGATCCAAAAGAAAACGAAGAATCCGATCCAAAAGCACCTGAAGAATCTGATCCAAAGGCATCATCCTCTTTAGGCTCCGAAGGTAATTTGAGTAGTGAACCTCCTGCAGCTACTGTTGATGAAGAAAGTGGTGAGAAAGAGAAGAGGAAGGGTAATGAAGATGATGAAAGGGAAAACTCTTCACAACCGAAAAAGGCGAGAGTTCAGCTAAGCCATCTCCAAAGTTCAGATGATGTCCAAGAAGAGACCCTGTAG

Protein sequence

>MS.gene028080.t1

MGKPNPQKSGTGGDLHAAARSGDLITVQSILISNPLAVNSRDKHSRTPLHLAAFSGQTEVVSYLCKNKADVGASAMDDMAAIHFAAQKGHLEVVRTLVSAGASFKAATRKGVTPLHFAVQGSHLELVKYLSKKGASLTIKTKAGKTPLDLATNDEVRSFLEGFEKSAKNGESKNEDKTEGSDPKENEESDPKAPEESDPKASSSLGSEGNLSSEPPAATVDEESGEKEKRKGNEDDERENSSQPKKARVQLSHLQSSDDVQEETL