Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028080.t1 | XP_003612598.1 | 87.1 | 263 | 34 | 0 | 1 | 263 | 1 | 263 | 2.40E-29 | 139.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028080.t1 | G7K6T6 | 87.1 | 263 | 34 | 0 | 1 | 263 | 1 | 263 | 1.7e-29 | 139.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene069687 | MS.gene028080 | PPI |
MS.gene028080 | MS.gene052891 | PPI |
MS.gene028080 | MS.gene02595 | PPI |
MS.gene028080 | MS.gene25036 | PPI |
MS.gene48062 | MS.gene028080 | PPI |
MS.gene64609 | MS.gene028080 | PPI |
MS.gene017616 | MS.gene028080 | PPI |
MS.gene028080 | MS.gene63845 | PPI |
MS.gene028080 | MS.gene62999 | PPI |
MS.gene84087 | MS.gene028080 | PPI |
MS.gene028080 | MS.gene44226 | PPI |
MS.gene028080 | MS.gene012131 | PPI |
MS.gene028080 | MS.gene062793 | PPI |
MS.gene028080 | MS.gene040721 | PPI |
MS.gene028080 | MS.gene018529 | PPI |
MS.gene051019 | MS.gene028080 | PPI |
MS.gene028080 | MS.gene02544 | PPI |
MS.gene028080 | MS.gene065931 | PPI |
MS.gene028080 | MS.gene061923 | PPI |
MS.gene028080 | MS.gene041675 | PPI |
MS.gene028080 | MS.gene026617 | PPI |
MS.gene33587 | MS.gene028080 | PPI |
MS.gene89677 | MS.gene028080 | PPI |
MS.gene08461 | MS.gene028080 | PPI |
MS.gene028080 | MS.gene81045 | PPI |
MS.gene65953 | MS.gene028080 | PPI |
MS.gene27398 | MS.gene028080 | PPI |
MS.gene028080 | MS.gene073697 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028080.t1 | MTR_5g026800 | 96.578 | 263 | 9 | 0 | 1 | 263 | 1 | 263 | 0.0 | 514 |
MS.gene028080.t1 | MTR_6g027840 | 37.600 | 125 | 77 | 1 | 12 | 136 | 365 | 488 | 1.06e-16 | 79.7 |
MS.gene028080.t1 | MTR_5g043640 | 35.099 | 151 | 93 | 2 | 15 | 160 | 58 | 208 | 1.09e-16 | 77.4 |
MS.gene028080.t1 | MTR_5g043640 | 32.192 | 146 | 98 | 1 | 15 | 160 | 94 | 238 | 4.02e-13 | 67.8 |
MS.gene028080.t1 | MTR_6g088470 | 32.164 | 171 | 100 | 5 | 3 | 160 | 8 | 175 | 2.16e-15 | 75.9 |
MS.gene028080.t1 | MTR_3g088410 | 34.127 | 126 | 82 | 1 | 15 | 140 | 24 | 148 | 2.44e-15 | 72.0 |
MS.gene028080.t1 | MTR_5g022050 | 31.973 | 147 | 97 | 2 | 15 | 159 | 263 | 408 | 1.55e-14 | 73.2 |
MS.gene028080.t1 | MTR_5g023090 | 30.657 | 137 | 94 | 1 | 15 | 151 | 297 | 432 | 1.32e-13 | 70.5 |
MS.gene028080.t1 | MTR_1g100797 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 9.54e-13 | 68.2 |
MS.gene028080.t1 | MTR_8g056020 | 31.967 | 122 | 82 | 1 | 18 | 139 | 236 | 356 | 5.42e-12 | 65.5 |
MS.gene028080.t1 | MTR_7g117620 | 34.756 | 164 | 98 | 5 | 15 | 169 | 120 | 283 | 6.25e-12 | 65.5 |
MS.gene028080.t1 | MTR_4g062100 | 30.493 | 223 | 128 | 7 | 8 | 204 | 101 | 322 | 9.75e-12 | 65.1 |
MS.gene028080.t1 | MTR_2g048680 | 29.139 | 151 | 104 | 2 | 4 | 152 | 139 | 288 | 1.76e-11 | 63.5 |
MS.gene028080.t1 | MTR_6g088470 | 32.258 | 124 | 76 | 3 | 3 | 121 | 8 | 128 | 2.30e-11 | 63.9 |
MS.gene028080.t1 | MTR_0020s0130 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 4.09e-11 | 63.2 |
MS.gene028080.t1 | MTR_7g100430 | 32.886 | 149 | 96 | 4 | 8 | 152 | 154 | 302 | 5.01e-11 | 62.8 |
MS.gene028080.t1 | MTR_4g021880 | 29.940 | 167 | 95 | 5 | 15 | 160 | 136 | 301 | 6.92e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028080.t1 | AT4G19150 | 56.225 | 249 | 78 | 3 | 14 | 261 | 19 | 237 | 1.00e-82 | 248 |
MS.gene028080.t1 | AT4G19150 | 51.402 | 214 | 73 | 3 | 49 | 261 | 31 | 214 | 1.30e-58 | 186 |
MS.gene028080.t1 | AT5G12320 | 33.858 | 127 | 83 | 1 | 14 | 140 | 14 | 139 | 3.01e-17 | 76.6 |
MS.gene028080.t1 | AT5G40160 | 37.008 | 127 | 80 | 0 | 25 | 151 | 165 | 291 | 6.04e-17 | 79.3 |
MS.gene028080.t1 | AT2G03430 | 34.667 | 150 | 94 | 2 | 15 | 160 | 51 | 200 | 2.13e-16 | 76.6 |
MS.gene028080.t1 | AT2G03430 | 34.752 | 141 | 84 | 4 | 37 | 169 | 39 | 179 | 1.88e-11 | 62.8 |
MS.gene028080.t1 | AT2G03430 | 30.968 | 155 | 99 | 2 | 15 | 162 | 87 | 240 | 2.80e-11 | 62.4 |
MS.gene028080.t1 | AT5G66055 | 34.228 | 149 | 91 | 4 | 15 | 159 | 264 | 409 | 2.22e-16 | 78.6 |
MS.gene028080.t1 | AT3G24530 | 35.417 | 144 | 84 | 3 | 15 | 149 | 19 | 162 | 2.25e-15 | 75.9 |
MS.gene028080.t1 | AT5G40160 | 35.398 | 113 | 73 | 0 | 31 | 143 | 171 | 283 | 1.02e-13 | 70.1 |
MS.gene028080.t1 | AT2G31820 | 35.211 | 142 | 89 | 3 | 15 | 153 | 228 | 369 | 2.98e-13 | 69.7 |
MS.gene028080.t1 | AT1G05640 | 37.255 | 153 | 86 | 5 | 8 | 153 | 184 | 333 | 7.40e-13 | 68.6 |
MS.gene028080.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene028080.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene028080.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 6.85e-12 | 65.5 |
MS.gene028080.t1 | AT3G09890 | 32.692 | 156 | 97 | 2 | 14 | 161 | 42 | 197 | 8.52e-12 | 63.2 |
MS.gene028080.t1 | AT2G28840 | 33.333 | 174 | 80 | 8 | 15 | 160 | 50 | 215 | 9.11e-12 | 65.1 |
MS.gene028080.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 9.31e-12 | 65.1 |
MS.gene028080.t1 | AT5G02620 | 33.557 | 149 | 95 | 4 | 8 | 152 | 87 | 235 | 9.31e-12 | 65.1 |
MS.gene028080.t1 | AT5G53470 | 32.374 | 139 | 56 | 3 | 15 | 151 | 222 | 324 | 1.14e-11 | 64.3 |
MS.gene028080.t1 | AT5G07270 | 35.484 | 124 | 78 | 2 | 9 | 130 | 8 | 131 | 1.86e-11 | 64.3 |
MS.gene028080.t1 | AT2G26650 | 31.081 | 148 | 99 | 2 | 4 | 151 | 544 | 688 | 2.27e-11 | 64.3 |
MS.gene028080.t1 | AT5G60070 | 34.416 | 154 | 88 | 5 | 8 | 152 | 104 | 253 | 2.75e-11 | 63.9 |
MS.gene028080.t1 | AT5G20350 | 32.203 | 177 | 102 | 6 | 15 | 183 | 102 | 268 | 6.59e-11 | 62.8 |
MS.gene028080.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 173 | 322 | 6.85e-11 | 62.8 |
MS.gene028080.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 173 | 322 | 6.85e-11 | 62.8 |
MS.gene028080.t1 | AT3G09550 | 34.667 | 150 | 94 | 4 | 7 | 152 | 180 | 329 | 7.76e-11 | 62.4 |
MS.gene028080.t1 | AT4G27780 | 28.873 | 142 | 63 | 3 | 15 | 154 | 237 | 342 | 9.92e-11 | 61.6 |
Find 72 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGATTCTTCAGGTGCTTT+TGG | 0.220900 | 5.4:-17709650 | None:intergenic |
AGTGAGACTTGCCCCTTTCT+TGG | 0.248840 | 5.4:-17709471 | None:intergenic |
AAACTCTTCACAACCGAAAA+AGG | 0.282462 | 5.4:+17709796 | MS.gene028080:CDS |
GTCCCTGATTTCTGTGGATT+TGG | 0.294656 | 5.4:-17707588 | None:intergenic |
CAACCTACAGGGTCTCTTCT+TGG | 0.315944 | 5.4:-17709859 | None:intergenic |
GCCTTTGGATCAGATTCTTC+AGG | 0.317269 | 5.4:-17709659 | None:intergenic |
TGCTTCTGCTATGGATGATA+TGG | 0.344938 | 5.4:+17709295 | MS.gene028080:CDS |
CTTGGACATCATCTGAACTT+TGG | 0.372832 | 5.4:-17709841 | None:intergenic |
TAATTGAGGATACGGTGTTC+TGG | 0.393428 | 5.4:-17707712 | None:intergenic |
CTTCATGCGGCGGCAAGGTC+CGG | 0.398665 | 5.4:+17707621 | MS.gene028080:CDS |
AAACCAAATCCACAGAAATC+AGG | 0.401690 | 5.4:+17707585 | MS.gene028080:CDS |
TGCTGTTCAAGGTTCCCATC+TGG | 0.407073 | 5.4:+17709430 | MS.gene028080:CDS |
CCTAAAGAGGATGATGCCTT+TGG | 0.430235 | 5.4:-17709674 | None:intergenic |
GTCAAGTACTTATCCAAGAA+AGG | 0.442200 | 5.4:+17709458 | MS.gene028080:CDS |
CCAAAGGCATCATCCTCTTT+AGG | 0.445769 | 5.4:+17709674 | MS.gene028080:CDS |
CGCCGCATGAAGGTCGCCGC+CGG | 0.459979 | 5.4:-17707610 | None:intergenic |
TTCACTACTCAAATTACCTT+CGG | 0.461363 | 5.4:-17709699 | None:intergenic |
GTTCGAACTCTGGTTTCAGC+TGG | 0.463456 | 5.4:+17709359 | MS.gene028080:CDS |
TGTTCTGGAGTGCTTATCTC+TGG | 0.471688 | 5.4:-17707697 | None:intergenic |
CTCACTATCAAGACAAAGGC+AGG | 0.472180 | 5.4:+17709488 | MS.gene028080:CDS |
TCAAGTACTTATCCAAGAAA+GGG | 0.475565 | 5.4:+17709459 | MS.gene028080:CDS |
TTTAGAAGTTGTTCGAACTC+TGG | 0.476082 | 5.4:+17709349 | MS.gene028080:CDS |
CCGAGTAGCGGCTTTGAAAG+AGG | 0.477525 | 5.4:-17709384 | None:intergenic |
TGGTGAGAAAGAGAAGAGGA+AGG | 0.484213 | 5.4:+17709751 | MS.gene028080:CDS |
CATTGGTAGCAAGATCCAAT+GGG | 0.488232 | 5.4:-17709517 | None:intergenic |
TTTGAAAAGTCAGCTAAGAA+TGG | 0.495928 | 5.4:+17709566 | MS.gene028080:CDS |
AAAGGAGCGGACTTCATCAT+TGG | 0.515117 | 5.4:-17709534 | None:intergenic |
GTGCTTATCTCTGGAATTGA+CGG | 0.516931 | 5.4:-17707688 | None:intergenic |
GGGTAATGAAGATGATGAAA+GGG | 0.517277 | 5.4:+17709772 | MS.gene028080:CDS |
TCTTCATCAACAGTAGCTGC+AGG | 0.519575 | 5.4:-17709725 | None:intergenic |
CCTTGAACAGCAAAATGTAA+TGG | 0.521701 | 5.4:-17709419 | None:intergenic |
ATTACCTTCGGAGCCTAAAG+AGG | 0.537106 | 5.4:-17709687 | None:intergenic |
CGGACCTTGCCGCCGCATGA+AGG | 0.544030 | 5.4:-17707620 | None:intergenic |
GCGACCTTCATGCGGCGGCA+AGG | 0.544925 | 5.4:+17707616 | MS.gene028080:CDS |
CCTCTTTCAAAGCCGCTACT+CGG | 0.546704 | 5.4:+17709384 | MS.gene028080:CDS |
AGGGTAATGAAGATGATGAA+AGG | 0.548445 | 5.4:+17709771 | MS.gene028080:CDS |
TTCAAAGCCGCTACTCGGAA+AGG | 0.550795 | 5.4:+17709389 | MS.gene028080:CDS |
CATCATCTGAACTTTGGAGA+TGG | 0.551884 | 5.4:-17709835 | None:intergenic |
TGATGTCGGTGCTTCTGCTA+TGG | 0.553962 | 5.4:+17709286 | MS.gene028080:CDS |
TCATTGGTAGCAAGATCCAA+TGG | 0.558682 | 5.4:-17709518 | None:intergenic |
ACCTGAAGAATCTGATCCAA+AGG | 0.559801 | 5.4:+17709658 | MS.gene028080:CDS |
CATCAGCTTTATTCTTGCAG+AGG | 0.562565 | 5.4:-17709268 | None:intergenic |
CCGCCGGTCCCTGATTTCTG+TGG | 0.567523 | 5.4:-17707594 | None:intergenic |
AACCAAATCCACAGAAATCA+GGG | 0.569694 | 5.4:+17707586 | MS.gene028080:CDS |
CGGCGGCGACCTTCATGCGG+CGG | 0.573003 | 5.4:+17707611 | MS.gene028080:CDS |
AAAGTGGTGAGAAAGAGAAG+AGG | 0.577048 | 5.4:+17709747 | MS.gene028080:CDS |
GGTGAGAAAGAGAAGAGGAA+GGG | 0.577937 | 5.4:+17709752 | MS.gene028080:CDS |
TCATCCTCTTTAGGCTCCGA+AGG | 0.581554 | 5.4:+17709683 | MS.gene028080:CDS |
GACCGGCGGCGACCTTCATG+CGG | 0.583532 | 5.4:+17707608 | MS.gene028080:CDS |
AGTACTTGACAAGTTCCAGA+TGG | 0.589385 | 5.4:-17709445 | None:intergenic |
CTGTGCCGCGAAGTGTATTG+CGG | 0.594539 | 5.4:-17709318 | None:intergenic |
TATGGCCGCAATACACTTCG+CGG | 0.596559 | 5.4:+17709313 | MS.gene028080:CDS |
TCTCTGGAATTGACGGCCAG+AGG | 0.598799 | 5.4:-17707681 | None:intergenic |
ATACACTTCGCGGCACAGAA+AGG | 0.600317 | 5.4:+17709323 | MS.gene028080:CDS |
CTGAACTGTAATCAGATCAC+CGG | 0.610660 | 5.4:-17707640 | None:intergenic |
GAAGTCCGCTCCTTTCTAGA+GGG | 0.610884 | 5.4:+17709542 | MS.gene028080:CDS |
AAAGGCAGGAAAGACCCCAT+TGG | 0.612270 | 5.4:+17709502 | MS.gene028080:CDS |
AAGAACGAAGATAAAACTGA+AGG | 0.613960 | 5.4:+17709596 | MS.gene028080:CDS |
AATCCACAGAAATCAGGGAC+CGG | 0.618128 | 5.4:+17707591 | MS.gene028080:CDS |
TGAAGTCCGCTCCTTTCTAG+AGG | 0.622198 | 5.4:+17709541 | MS.gene028080:CDS |
CAAGTACTTATCCAAGAAAG+GGG | 0.626997 | 5.4:+17709460 | MS.gene028080:CDS |
CAAATCCCTCTAGAAAGGAG+CGG | 0.629038 | 5.4:-17709547 | None:intergenic |
GCTACTGTTGATGAAGAAAG+TGG | 0.635967 | 5.4:+17709731 | MS.gene028080:CDS |
TGCAAGAATAAAGCTGATGT+CGG | 0.636789 | 5.4:+17709272 | MS.gene028080:CDS |
GTACTTGACAAGTTCCAGAT+GGG | 0.651589 | 5.4:-17709444 | None:intergenic |
TCATCAACAGTAGCTGCAGG+AGG | 0.660427 | 5.4:-17709722 | None:intergenic |
AGTCACGCCTTTCCGAGTAG+CGG | 0.663740 | 5.4:-17709396 | None:intergenic |
AAGTCTCACTATCAAGACAA+AGG | 0.667954 | 5.4:+17709484 | MS.gene028080:CDS |
CCACAGAAATCAGGGACCGG+CGG | 0.674685 | 5.4:+17707594 | MS.gene028080:CDS |
TGTCCAAGAAGAGACCCTGT+AGG | 0.707431 | 5.4:+17709856 | MS.gene028080:CDS |
TATGCCTCTACCAACCTACA+GGG | 0.721432 | 5.4:-17709870 | None:intergenic |
ATTGGTAGCAAGATCCAATG+GGG | 0.757229 | 5.4:-17709516 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTATATATTTCTTTCTA+AGG | + | chr5.4:17708429-17708448 | MS.gene028080:intron | 15.0% |
!! | ATAATATACAGTAACAAAAT+TGG | - | chr5.4:17708645-17708664 | None:intergenic | 15.0% |
!! | ATTATTGTAAAAATATCTAC+AGG | + | chr5.4:17708569-17708588 | MS.gene028080:intron | 15.0% |
!! | TAATATACAGTAACAAAATT+GGG | - | chr5.4:17708644-17708663 | None:intergenic | 15.0% |
!! | TCAAATAAATTAATCCAAAT+AGG | + | chr5.4:17708284-17708303 | MS.gene028080:intron | 15.0% |
!!! | ACATTACTTTTAAAATATCT+GGG | - | chr5.4:17708414-17708433 | None:intergenic | 15.0% |
!!! | TACATTACTTTTAAAATATC+TGG | - | chr5.4:17708415-17708434 | None:intergenic | 15.0% |
!! | AATATACAGTAACAAAATTG+GGG | - | chr5.4:17708643-17708662 | None:intergenic | 20.0% |
!! | CTTATGTATACTATTGTAAA+AGG | + | chr5.4:17707870-17707889 | MS.gene028080:intron | 20.0% |
!! | GTTTCTTTAACATACATATT+TGG | + | chr5.4:17709055-17709074 | MS.gene028080:intron | 20.0% |
!! | TTAAGGAAGATAATTTAGTT+TGG | + | chr5.4:17708981-17709000 | MS.gene028080:intron | 20.0% |
!!! | ACAAGAAAATTTTAATTCTC+AGG | - | chr5.4:17708728-17708747 | None:intergenic | 20.0% |
!!! | ATTACTTTTAAAATATCTGG+GGG | - | chr5.4:17708412-17708431 | None:intergenic | 20.0% |
!!! | ATTTTACATGATTGTATTCT+GGG | + | chr5.4:17708947-17708966 | MS.gene028080:intron | 20.0% |
!!! | CATTACTTTTAAAATATCTG+GGG | - | chr5.4:17708413-17708432 | None:intergenic | 20.0% |
! | AAAATGAAAATCACACATGA+AGG | + | chr5.4:17708498-17708517 | MS.gene028080:intron | 25.0% |
! | AAATGAAAATCACACATGAA+GGG | + | chr5.4:17708499-17708518 | MS.gene028080:intron | 25.0% |
! | AATATGCATGTTTCTTTCTA+AGG | - | chr5.4:17708552-17708571 | None:intergenic | 25.0% |
! | ATAAGGAAGAATACTTTATC+TGG | + | chr5.4:17709124-17709143 | MS.gene028080:intron | 25.0% |
! | ATATACAGTAACAAAATTGG+GGG | - | chr5.4:17708642-17708661 | None:intergenic | 25.0% |
! | ATCATGTAAAATGTAGTCTA+TGG | - | chr5.4:17708939-17708958 | None:intergenic | 25.0% |
! | CATTAATGATAACCATGTAA+TGG | - | chr5.4:17708312-17708331 | None:intergenic | 25.0% |
! | CATTACATGGTTATCATTAA+TGG | + | chr5.4:17708310-17708329 | MS.gene028080:intron | 25.0% |
! | TAAGGAAGAATACTTTATCT+GGG | + | chr5.4:17709125-17709144 | MS.gene028080:intron | 25.0% |
! | TGAAGAGTTATGAAAATAAG+CGG | + | chr5.4:17707956-17707975 | MS.gene028080:intron | 25.0% |
! | TGTAGTCTATTGTTCAAATT+TGG | - | chr5.4:17709209-17709228 | None:intergenic | 25.0% |
!! | ATTTTAGATGACTGTATTCT+GGG | + | chr5.4:17709090-17709109 | MS.gene028080:intron | 25.0% |
!! | CATTTTACATGATTGTATTC+TGG | + | chr5.4:17708946-17708965 | MS.gene028080:intron | 25.0% |
!! | GAAGTTACTAGATTTTTCTT+TGG | + | chr5.4:17708869-17708888 | MS.gene028080:intron | 25.0% |
!! | GTCATCTAAAATATAGTCTA+TGG | - | chr5.4:17709082-17709101 | None:intergenic | 25.0% |
!! | TTTTACATGATTGTATTCTG+GGG | + | chr5.4:17708948-17708967 | MS.gene028080:intron | 25.0% |
!!! | AATTTTGATTTCAAATCCTC+TGG | + | chr5.4:17707665-17707684 | MS.gene028080:CDS | 25.0% |
!!! | TATTTTAGATGACTGTATTC+TGG | + | chr5.4:17709089-17709108 | MS.gene028080:intron | 25.0% |
AAGAACGAAGATAAAACTGA+AGG | + | chr5.4:17709596-17709615 | MS.gene028080:CDS | 30.0% | |
AGAGGTTTAAACCAAAAGTT+GGG | + | chr5.4:17708334-17708353 | MS.gene028080:intron | 30.0% | |
AGTTATGACATACAAGAGTT+TGG | + | chr5.4:17708383-17708402 | MS.gene028080:intron | 30.0% | |
ATAAGGAGGAAAACTTTATC+TGG | + | chr5.4:17708843-17708862 | MS.gene028080:intron | 30.0% | |
GATGACATGAAAAAGAGTTA+GGG | - | chr5.4:17707747-17707766 | None:intergenic | 30.0% | |
GGATGTTAAAGAAAACAACA+AGG | - | chr5.4:17709188-17709207 | None:intergenic | 30.0% | |
GTTATGACATACAAGAGTTT+GGG | + | chr5.4:17708384-17708403 | MS.gene028080:intron | 30.0% | |
TAAGGAGGAAAACTTTATCT+GGG | + | chr5.4:17708844-17708863 | MS.gene028080:intron | 30.0% | |
TCAAGTACTTATCCAAGAAA+GGG | + | chr5.4:17709459-17709478 | MS.gene028080:CDS | 30.0% | |
TGATGACATGAAAAAGAGTT+AGG | - | chr5.4:17707748-17707767 | None:intergenic | 30.0% | |
TGGTAAAGTTAGTAGTAACT+GGG | + | chr5.4:17709001-17709020 | MS.gene028080:intron | 30.0% | |
TTCACTACTCAAATTACCTT+CGG | - | chr5.4:17709702-17709721 | None:intergenic | 30.0% | |
TTGGTAAAGTTAGTAGTAAC+TGG | + | chr5.4:17709000-17709019 | MS.gene028080:intron | 30.0% | |
TTTGAAAAGTCAGCTAAGAA+TGG | + | chr5.4:17709566-17709585 | MS.gene028080:CDS | 30.0% | |
! | ATGCTATTTATCTGCTTGTT+AGG | + | chr5.4:17708687-17708706 | MS.gene028080:intron | 30.0% |
! | TACATTTAGCTGCATTTTCT+GGG | + | chr5.4:17709225-17709244 | MS.gene028080:CDS | 30.0% |
! | TGCTATTTATCTGCTTGTTA+GGG | + | chr5.4:17708688-17708707 | MS.gene028080:intron | 30.0% |
! | TTCTTCGTTTTCTTTTGGAT+CGG | - | chr5.4:17709624-17709643 | None:intergenic | 30.0% |
!! | TGTGTTCTAGAGAGAAAATA+AGG | + | chr5.4:17708826-17708845 | MS.gene028080:intron | 30.0% |
!! | TTTTTGAAAGCCTAGTCTAA+GGG | - | chr5.4:17708192-17708211 | None:intergenic | 30.0% |
!!! | TTTTTTGAAAGCCTAGTCTA+AGG | - | chr5.4:17708193-17708212 | None:intergenic | 30.0% |
AAACCAAATCCACAGAAATC+AGG | + | chr5.4:17707585-17707604 | MS.gene028080:CDS | 35.0% | |
AAACTCTTCACAACCGAAAA+AGG | + | chr5.4:17709796-17709815 | MS.gene028080:CDS | 35.0% | |
AAATCACACATGAAGGGATA+TGG | + | chr5.4:17708505-17708524 | MS.gene028080:intron | 35.0% | |
AAATGTAGTCTATGGTCCAA+AGG | - | chr5.4:17708931-17708950 | None:intergenic | 35.0% | |
AACCAAATCCACAGAAATCA+GGG | + | chr5.4:17707586-17707605 | MS.gene028080:CDS | 35.0% | |
AAGGAGGAAAACTTTATCTG+GGG | + | chr5.4:17708845-17708864 | MS.gene028080:intron | 35.0% | |
AAGTCTCACTATCAAGACAA+AGG | + | chr5.4:17709484-17709503 | MS.gene028080:CDS | 35.0% | |
ACCCATTAAAAGCTAAAGCA+AGG | - | chr5.4:17708125-17708144 | None:intergenic | 35.0% | |
AGGGTAATGAAGATGATGAA+AGG | + | chr5.4:17709771-17709790 | MS.gene028080:CDS | 35.0% | |
ATGGTTATCATTAATGGCAG+AGG | + | chr5.4:17708316-17708335 | MS.gene028080:intron | 35.0% | |
ATTGAACCCCTCGAATTAAT+CGG | + | chr5.4:17708166-17708185 | MS.gene028080:intron | 35.0% | |
CAAGTACTTATCCAAGAAAG+GGG | + | chr5.4:17709460-17709479 | MS.gene028080:CDS | 35.0% | |
CAGAGGTTTAAACCAAAAGT+TGG | + | chr5.4:17708333-17708352 | MS.gene028080:intron | 35.0% | |
CCTTGAACAGCAAAATGTAA+TGG | - | chr5.4:17709422-17709441 | None:intergenic | 35.0% | |
GACTGTATTCTGGGTATATT+GGG | + | chr5.4:17709099-17709118 | MS.gene028080:intron | 35.0% | |
GAGGTTTAAACCAAAAGTTG+GGG | + | chr5.4:17708335-17708354 | MS.gene028080:intron | 35.0% | |
GCACATCTTAGTTATGACAT+AGG | - | chr5.4:17708607-17708626 | None:intergenic | 35.0% | |
GGGTAATGAAGATGATGAAA+GGG | + | chr5.4:17709772-17709791 | MS.gene028080:CDS | 35.0% | |
GTCAAGTACTTATCCAAGAA+AGG | + | chr5.4:17709458-17709477 | MS.gene028080:CDS | 35.0% | |
GTTTCTTCAACAATCACCTT+TGG | + | chr5.4:17708912-17708931 | MS.gene028080:intron | 35.0% | |
TAAGCTGCAAATAAGCGTTA+GGG | - | chr5.4:17707823-17707842 | None:intergenic | 35.0% | |
TCATAACTAAGATGTGCCAT+TGG | + | chr5.4:17708610-17708629 | MS.gene028080:intron | 35.0% | |
TCTGGGGAAAATTGGAATTA+AGG | + | chr5.4:17708964-17708983 | MS.gene028080:intron | 35.0% | |
TCTGGGTATATTGGGAAATA+AGG | + | chr5.4:17709107-17709126 | MS.gene028080:intron | 35.0% | |
TGACTGTATTCTGGGTATAT+TGG | + | chr5.4:17709098-17709117 | MS.gene028080:intron | 35.0% | |
TGCAAGAATAAAGCTGATGT+CGG | + | chr5.4:17709272-17709291 | MS.gene028080:CDS | 35.0% | |
TTTAGAAGTTGTTCGAACTC+TGG | + | chr5.4:17709349-17709368 | MS.gene028080:CDS | 35.0% | |
! | CGAAGTAACTGAGTTTTTCT+TGG | + | chr5.4:17709148-17709167 | MS.gene028080:intron | 35.0% |
! | CTACATTTAGCTGCATTTTC+TGG | + | chr5.4:17709224-17709243 | MS.gene028080:CDS | 35.0% |
! | GATTGTATTCTGGGGAAAAT+TGG | + | chr5.4:17708956-17708975 | MS.gene028080:intron | 35.0% |
! | TCGGATTCTTCGTTTTCTTT+TGG | - | chr5.4:17709629-17709648 | None:intergenic | 35.0% |
! | TTTTTGCTCCATGTTTAAGG+TGG | - | chr5.4:17708473-17708492 | None:intergenic | 35.0% |
!! | ATGGACTAGTCTATCGAAAT+TGG | - | chr5.4:17708096-17708115 | None:intergenic | 35.0% |
!! | CTTTTCAAATCCCTCTAGAA+AGG | - | chr5.4:17709555-17709574 | None:intergenic | 35.0% |
!! | GTTCTAGAGAGAAAATAAGG+AGG | + | chr5.4:17708829-17708848 | MS.gene028080:intron | 35.0% |
!! | TGCGTTGATAATTGAGGATA+CGG | - | chr5.4:17707723-17707742 | None:intergenic | 35.0% |
!! | TGCTTTTTGCTCCATGTTTA+AGG | - | chr5.4:17708476-17708495 | None:intergenic | 35.0% |
!!! | AGCCTTGCTTTAGCTTTTAA+TGG | + | chr5.4:17708120-17708139 | MS.gene028080:intron | 35.0% |
!!! | CCATTACATTTTGCTGTTCA+AGG | + | chr5.4:17709419-17709438 | MS.gene028080:CDS | 35.0% |
!!! | GCCTTGCTTTAGCTTTTAAT+GGG | + | chr5.4:17708121-17708140 | MS.gene028080:intron | 35.0% |
AAAGTGGTGAGAAAGAGAAG+AGG | + | chr5.4:17709747-17709766 | MS.gene028080:CDS | 40.0% | |
AAATTGGGGGTGATAACCAA+TGG | - | chr5.4:17708629-17708648 | None:intergenic | 40.0% | |
AATTAATCGGCCCTTAGACT+AGG | + | chr5.4:17708179-17708198 | MS.gene028080:intron | 40.0% | |
ACCATGTAATGGTGCCTATT+TGG | - | chr5.4:17708301-17708320 | None:intergenic | 40.0% | |
ACCTGAAGAATCTGATCCAA+AGG | + | chr5.4:17709658-17709677 | MS.gene028080:CDS | 40.0% | |
AGTACTTGACAAGTTCCAGA+TGG | - | chr5.4:17709448-17709467 | None:intergenic | 40.0% | |
AGTAGTAACTGGGTTTCACT+TGG | + | chr5.4:17709011-17709030 | MS.gene028080:intron | 40.0% | |
AGTTATGACATAGGAGAGCT+AGG | - | chr5.4:17708598-17708617 | None:intergenic | 40.0% | |
CTGAACTGTAATCAGATCAC+CGG | - | chr5.4:17707643-17707662 | None:intergenic | 40.0% | |
CTTCTGCATGTATGTGTCTA+TGG | + | chr5.4:17708774-17708793 | MS.gene028080:intron | 40.0% | |
CTTGGACATCATCTGAACTT+TGG | - | chr5.4:17709844-17709863 | None:intergenic | 40.0% | |
GTAAGCTGCAAATAAGCGTT+AGG | - | chr5.4:17707824-17707843 | None:intergenic | 40.0% | |
GTACTTGACAAGTTCCAGAT+GGG | - | chr5.4:17709447-17709466 | None:intergenic | 40.0% | |
GTAGTAACTGGGTTTCACTT+GGG | + | chr5.4:17709012-17709031 | MS.gene028080:intron | 40.0% | |
GTTATGACATAGGAGAGCTA+GGG | - | chr5.4:17708597-17708616 | None:intergenic | 40.0% | |
TAATTGAGGATACGGTGTTC+TGG | - | chr5.4:17707715-17707734 | None:intergenic | 40.0% | |
TCCAAATAGGCACCATTACA+TGG | + | chr5.4:17708297-17708316 | MS.gene028080:intron | 40.0% | |
TGCTTCTGCTATGGATGATA+TGG | + | chr5.4:17709295-17709314 | MS.gene028080:CDS | 40.0% | |
TTAAACCAAAAGTTGGGGCA+TGG | + | chr5.4:17708340-17708359 | MS.gene028080:intron | 40.0% | |
! | ATTGGTAGCAAGATCCAATG+GGG | - | chr5.4:17709519-17709538 | None:intergenic | 40.0% |
! | CATCATCTGAACTTTGGAGA+TGG | - | chr5.4:17709838-17709857 | None:intergenic | 40.0% |
! | CATTGGTAGCAAGATCCAAT+GGG | - | chr5.4:17709520-17709539 | None:intergenic | 40.0% |
! | GCTACTGTTGATGAAGAAAG+TGG | + | chr5.4:17709731-17709750 | MS.gene028080:CDS | 40.0% |
! | TCAGATTCTTCAGGTGCTTT+TGG | - | chr5.4:17709653-17709672 | None:intergenic | 40.0% |
! | TCATTGGTAGCAAGATCCAA+TGG | - | chr5.4:17709521-17709540 | None:intergenic | 40.0% |
! | TTCTTCAGGTGCTTTTGGAT+CGG | - | chr5.4:17709648-17709667 | None:intergenic | 40.0% |
! | TTTAATGGGTCTCTTGCAAG+TGG | + | chr5.4:17708135-17708154 | MS.gene028080:intron | 40.0% |
!! | CATCAGCTTTATTCTTGCAG+AGG | - | chr5.4:17709271-17709290 | None:intergenic | 40.0% |
!! | GTGCTTATCTCTGGAATTGA+CGG | - | chr5.4:17707691-17707710 | None:intergenic | 40.0% |
!! | TAGGGTTGCGTTGATAATTG+AGG | - | chr5.4:17707729-17707748 | None:intergenic | 40.0% |
AATCCACAGAAATCAGGGAC+CGG | + | chr5.4:17707591-17707610 | MS.gene028080:CDS | 45.0% | |
AGCTAAAGCAAGGCTCTGTA+TGG | - | chr5.4:17708115-17708134 | None:intergenic | 45.0% | |
ATAAGCTAACCCACTTGGGT+TGG | + | chr5.4:17708001-17708020 | MS.gene028080:intron | 45.0% | |
ATCGAACCTAAGACCTTGAG+AGG | - | chr5.4:17708062-17708081 | None:intergenic | 45.0% | |
ATGCCATAAGCTAACCCACT+TGG | + | chr5.4:17707996-17708015 | MS.gene028080:intron | 45.0% | |
ATTACCTTCGGAGCCTAAAG+AGG | - | chr5.4:17709690-17709709 | None:intergenic | 45.0% | |
CCTAAAGAGGATGATGCCTT+TGG | - | chr5.4:17709677-17709696 | None:intergenic | 45.0% | |
CTAAGGGCCGATTAATTCGA+GGG | - | chr5.4:17708176-17708195 | None:intergenic | 45.0% | |
CTCACTATCAAGACAAAGGC+AGG | + | chr5.4:17709488-17709507 | MS.gene028080:CDS | 45.0% | |
GCCTTTGGATCAGATTCTTC+AGG | - | chr5.4:17709662-17709681 | None:intergenic | 45.0% | |
GGTGAGAAAGAGAAGAGGAA+GGG | + | chr5.4:17709752-17709771 | MS.gene028080:CDS | 45.0% | |
GTCCCTGATTTCTGTGGATT+TGG | - | chr5.4:17707591-17707610 | None:intergenic | 45.0% | |
GTCTTAGGTTCGATTACCTC+TGG | + | chr5.4:17708068-17708087 | MS.gene028080:intron | 45.0% | |
TAAGGGCCGATTAATTCGAG+GGG | - | chr5.4:17708175-17708194 | None:intergenic | 45.0% | |
TCTAAGGGCCGATTAATTCG+AGG | - | chr5.4:17708177-17708196 | None:intergenic | 45.0% | |
TCTATCGAAATTGGCACCAG+AGG | - | chr5.4:17708087-17708106 | None:intergenic | 45.0% | |
TCTTCATCAACAGTAGCTGC+AGG | - | chr5.4:17709728-17709747 | None:intergenic | 45.0% | |
TGCCATAAGCTAACCCACTT+GGG | + | chr5.4:17707997-17708016 | MS.gene028080:intron | 45.0% | |
TGGTGAGAAAGAGAAGAGGA+AGG | + | chr5.4:17709751-17709770 | MS.gene028080:CDS | 45.0% | |
! | AAAGGAGCGGACTTCATCAT+TGG | - | chr5.4:17709537-17709556 | None:intergenic | 45.0% |
! | AGCTGAACTCTCGCCTTTTT+CGG | - | chr5.4:17709812-17709831 | None:intergenic | 45.0% |
! | CAAATCCCTCTAGAAAGGAG+CGG | - | chr5.4:17709550-17709569 | None:intergenic | 45.0% |
! | TGCTCCATGTTTAAGGTGGT+GGG | - | chr5.4:17708469-17708488 | None:intergenic | 45.0% |
! | TTGCTCCATGTTTAAGGTGG+TGG | - | chr5.4:17708470-17708489 | None:intergenic | 45.0% |
!! | AACCCAAGTGGGTTAGCTTA+TGG | - | chr5.4:17708002-17708021 | None:intergenic | 45.0% |
!! | CCAAAGGCATCATCCTCTTT+AGG | + | chr5.4:17709674-17709693 | MS.gene028080:CDS | 45.0% |
!! | TGTTCTGGAGTGCTTATCTC+TGG | - | chr5.4:17707700-17707719 | None:intergenic | 45.0% |
AAAGGCAGGAAAGACCCCAT+TGG | + | chr5.4:17709502-17709521 | MS.gene028080:CDS | 50.0% | |
AACCAAAAGTTGGGGCATGG+AGG | + | chr5.4:17708343-17708362 | MS.gene028080:intron | 50.0% | |
AGTGAGACTTGCCCCTTTCT+TGG | - | chr5.4:17709474-17709493 | None:intergenic | 50.0% | |
ATACACTTCGCGGCACAGAA+AGG | + | chr5.4:17709323-17709342 | MS.gene028080:CDS | 50.0% | |
ATGGGTCTCTTGCAAGTGGA+CGG | + | chr5.4:17708139-17708158 | MS.gene028080:intron | 50.0% | |
CCTCTTTCAAAGCCGCTACT+CGG | + | chr5.4:17709384-17709403 | MS.gene028080:CDS | 50.0% | |
GAAGTCCGCTCCTTTCTAGA+GGG | + | chr5.4:17709542-17709561 | MS.gene028080:CDS | 50.0% | |
TATGGCCGCAATACACTTCG+CGG | + | chr5.4:17709313-17709332 | MS.gene028080:CDS | 50.0% | |
TCATCAACAGTAGCTGCAGG+AGG | - | chr5.4:17709725-17709744 | None:intergenic | 50.0% | |
TCATCCTCTTTAGGCTCCGA+AGG | + | chr5.4:17709683-17709702 | MS.gene028080:CDS | 50.0% | |
TGAAGTCCGCTCCTTTCTAG+AGG | + | chr5.4:17709541-17709560 | MS.gene028080:CDS | 50.0% | |
TGCTGTTCAAGGTTCCCATC+TGG | + | chr5.4:17709430-17709449 | MS.gene028080:CDS | 50.0% | |
TGTGGTCCTCTCAAGGTCTT+AGG | + | chr5.4:17708053-17708072 | MS.gene028080:intron | 50.0% | |
TTCAAAGCCGCTACTCGGAA+AGG | + | chr5.4:17709389-17709408 | MS.gene028080:CDS | 50.0% | |
! | ATCCTCCATGCCCCAACTTT+TGG | - | chr5.4:17708348-17708367 | None:intergenic | 50.0% |
! | CTCCATGTTTAAGGTGGTGG+GGG | - | chr5.4:17708467-17708486 | None:intergenic | 50.0% |
! | GCTCCATGTTTAAGGTGGTG+GGG | - | chr5.4:17708468-17708487 | None:intergenic | 50.0% |
! | GTTCGAACTCTGGTTTCAGC+TGG | + | chr5.4:17709359-17709378 | MS.gene028080:CDS | 50.0% |
! | TGATGTCGGTGCTTCTGCTA+TGG | + | chr5.4:17709286-17709305 | MS.gene028080:CDS | 50.0% |
! | TGGTTTGGGATCTAGGAGTG+TGG | + | chr5.4:17708035-17708054 | MS.gene028080:intron | 50.0% |
!! | GAAGGGATATGGTGTTGTGC+TGG | + | chr5.4:17708516-17708535 | MS.gene028080:intron | 50.0% |
AGTCACGCCTTTCCGAGTAG+CGG | - | chr5.4:17709399-17709418 | None:intergenic | 55.0% | |
CACCCCCACCACCTTAAACA+TGG | + | chr5.4:17708462-17708481 | MS.gene028080:intron | 55.0% | |
CTGTGCCGCGAAGTGTATTG+CGG | - | chr5.4:17709321-17709340 | None:intergenic | 55.0% | |
GTCTCTTGCAAGTGGACGGT+GGG | + | chr5.4:17708143-17708162 | MS.gene028080:intron | 55.0% | |
! | CTAGGAGTGTGGTCCTCTCA+AGG | + | chr5.4:17708046-17708065 | MS.gene028080:intron | 55.0% |
!! | CCGAGTAGCGGCTTTGAAAG+AGG | - | chr5.4:17709387-17709406 | None:intergenic | 55.0% |
!! | CTAACCCACTTGGGTTGGTC+AGG | + | chr5.4:17708006-17708025 | MS.gene028080:intron | 55.0% |
!! | GTGGGGTTGGTTTGGGATCT+AGG | + | chr5.4:17708028-17708047 | MS.gene028080:intron | 55.0% |
!! | TCTCTGGAATTGACGGCCAG+AGG | - | chr5.4:17707684-17707703 | None:intergenic | 55.0% |
!! | TGGTCAGGTGGGGTTGGTTT+GGG | + | chr5.4:17708021-17708040 | MS.gene028080:intron | 55.0% |
!! | TTGGTCAGGTGGGGTTGGTT+TGG | + | chr5.4:17708020-17708039 | MS.gene028080:intron | 55.0% |
CCACAGAAATCAGGGACCGG+CGG | + | chr5.4:17707594-17707613 | MS.gene028080:CDS | 60.0% | |
CCCACCTGACCAACCCAAGT+GGG | - | chr5.4:17708013-17708032 | None:intergenic | 60.0% | |
GGTCTCTTGCAAGTGGACGG+TGG | + | chr5.4:17708142-17708161 | MS.gene028080:intron | 60.0% | |
!! | ACCCACTTGGGTTGGTCAGG+TGG | + | chr5.4:17708009-17708028 | MS.gene028080:intron | 60.0% |
!! | CCACTTGGGTTGGTCAGGTG+GGG | + | chr5.4:17708011-17708030 | MS.gene028080:intron | 60.0% |
!! | CCCACTTGGGTTGGTCAGGT+GGG | + | chr5.4:17708010-17708029 | MS.gene028080:intron | 60.0% |
!! | TTGGGTTGGTCAGGTGGGGT+TGG | + | chr5.4:17708015-17708034 | MS.gene028080:intron | 60.0% |
CCCCACCTGACCAACCCAAG+TGG | - | chr5.4:17708014-17708033 | None:intergenic | 65.0% | |
CCGCCGGTCCCTGATTTCTG+TGG | - | chr5.4:17707597-17707616 | None:intergenic | 65.0% | |
CTTCATGCGGCGGCAAGGTC+CGG | + | chr5.4:17707621-17707640 | MS.gene028080:CDS | 65.0% | |
CGGACCTTGCCGCCGCATGA+AGG | - | chr5.4:17707623-17707642 | None:intergenic | 70.0% | |
GACCGGCGGCGACCTTCATG+CGG | + | chr5.4:17707608-17707627 | MS.gene028080:CDS | 70.0% | |
GCGACCTTCATGCGGCGGCA+AGG | + | chr5.4:17707616-17707635 | MS.gene028080:CDS | 70.0% | |
CGCCGCATGAAGGTCGCCGC+CGG | - | chr5.4:17707613-17707632 | None:intergenic | 75.0% | |
CGGCGGCGACCTTCATGCGG+CGG | + | chr5.4:17707611-17707630 | MS.gene028080:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 17707579 | 17709877 | 17707579 | ID=MS.gene028080 |
chr5.4 | mRNA | 17707579 | 17709877 | 17707579 | ID=MS.gene028080.t1;Parent=MS.gene028080 |
chr5.4 | exon | 17707579 | 17707721 | 17707579 | ID=MS.gene028080.t1.exon1;Parent=MS.gene028080.t1 |
chr5.4 | CDS | 17707579 | 17707721 | 17707579 | ID=cds.MS.gene028080.t1;Parent=MS.gene028080.t1 |
chr5.4 | exon | 17709223 | 17709877 | 17709223 | ID=MS.gene028080.t1.exon2;Parent=MS.gene028080.t1 |
chr5.4 | CDS | 17709223 | 17709877 | 17709223 | ID=cds.MS.gene028080.t1;Parent=MS.gene028080.t1 |
Gene Sequence |
Protein sequence |