Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83630.t1 | XP_013463481.1 | 84.6 | 332 | 45 | 4 | 1 | 329 | 1 | 329 | 6.70E-159 | 570.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83630.t1 | P23472 | 50.3 | 302 | 140 | 7 | 4 | 300 | 3 | 299 | 7.7e-79 | 295.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83630.t1 | A0A072V7A7 | 84.6 | 332 | 45 | 4 | 1 | 329 | 1 | 329 | 4.9e-159 | 570.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene83630 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene83630 | 0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene049711 | MS.gene83630 | 0.827285 | 1.70E-54 | -1.69E-46 |
| MS.gene050414 | MS.gene83630 | 0.831837 | 1.33E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene83630 | 0.96315 | 9.84E-122 | -1.69E-46 |
| MS.gene051279 | MS.gene83630 | 0.825196 | 5.35E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene83630 | 0.800607 | 1.33E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene83630 | 0.810158 | 1.32E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene83630 | 0.801431 | 9.03E-49 | -1.69E-46 |
| MS.gene052989 | MS.gene83630 | 0.876822 | 1.03E-68 | -1.69E-46 |
| MS.gene053272 | MS.gene83630 | -0.80362 | 3.20E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene83630 | 0.803498 | 3.39E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene83630 | 0.819296 | 1.25E-52 | -1.69E-46 |
| MS.gene055229 | MS.gene83630 | 0.818865 | 1.57E-52 | -1.69E-46 |
| MS.gene056082 | MS.gene83630 | 0.822643 | 2.12E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene83630 | 0.828179 | 1.04E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene83630 | 0.82133 | 4.28E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene83630 | 0.818094 | 2.35E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene83630 | -0.808272 | 3.36E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene83630 | 0.802766 | 4.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83630.t1 | MTR_2g040830 | 84.639 | 332 | 45 | 4 | 1 | 329 | 1 | 329 | 0.0 | 554 |
| MS.gene83630.t1 | MTR_2g040690 | 82.335 | 334 | 51 | 5 | 1 | 329 | 1 | 331 | 0.0 | 536 |
| MS.gene83630.t1 | MTR_2g040740 | 81.325 | 332 | 55 | 6 | 1 | 329 | 1 | 328 | 0.0 | 513 |
| MS.gene83630.t1 | MTR_2g040650 | 82.424 | 330 | 52 | 5 | 1 | 329 | 1 | 325 | 0.0 | 505 |
| MS.gene83630.t1 | MTR_1g099310 | 51.803 | 305 | 133 | 8 | 1 | 300 | 1 | 296 | 3.01e-97 | 290 |
| MS.gene83630.t1 | MTR_5g043550 | 52.843 | 299 | 125 | 8 | 10 | 300 | 4 | 294 | 7.26e-97 | 288 |
| MS.gene83630.t1 | MTR_0027s0260 | 49.013 | 304 | 140 | 8 | 5 | 300 | 2 | 298 | 7.96e-94 | 281 |
| MS.gene83630.t1 | MTR_8g055940 | 47.712 | 306 | 145 | 8 | 1 | 300 | 1 | 297 | 2.54e-91 | 275 |
| MS.gene83630.t1 | MTR_1g099290 | 49.315 | 292 | 137 | 6 | 11 | 297 | 10 | 295 | 1.82e-88 | 276 |
| MS.gene83630.t1 | MTR_1g099320 | 52.030 | 271 | 119 | 7 | 23 | 287 | 20 | 285 | 1.66e-87 | 265 |
| MS.gene83630.t1 | MTR_2g040880 | 83.673 | 147 | 23 | 1 | 183 | 329 | 1 | 146 | 2.41e-85 | 254 |
| MS.gene83630.t1 | MTR_7g116850 | 47.138 | 297 | 145 | 8 | 11 | 300 | 35 | 326 | 2.71e-80 | 247 |
| MS.gene83630.t1 | MTR_8g467650 | 47.508 | 301 | 142 | 10 | 8 | 300 | 6 | 298 | 1.41e-79 | 244 |
| MS.gene83630.t1 | MTR_7g116350 | 45.791 | 297 | 137 | 7 | 11 | 302 | 9 | 286 | 1.49e-79 | 258 |
| MS.gene83630.t1 | MTR_2g102020 | 46.416 | 293 | 139 | 8 | 7 | 286 | 13 | 300 | 8.95e-78 | 242 |
| MS.gene83630.t1 | MTR_1g099350 | 47.388 | 268 | 128 | 7 | 24 | 286 | 19 | 278 | 1.49e-77 | 239 |
| MS.gene83630.t1 | MTR_6g023340 | 45.105 | 286 | 142 | 9 | 24 | 300 | 23 | 302 | 4.10e-74 | 231 |
| MS.gene83630.t1 | MTR_2g040870 | 70.253 | 158 | 43 | 2 | 17 | 171 | 13 | 169 | 3.67e-72 | 221 |
| MS.gene83630.t1 | MTR_2g040900 | 60.000 | 155 | 60 | 2 | 176 | 329 | 17 | 170 | 3.82e-58 | 185 |
| MS.gene83630.t1 | MTR_2g040890 | 55.367 | 177 | 70 | 5 | 1 | 171 | 1 | 174 | 2.02e-56 | 182 |
| MS.gene83630.t1 | MTR_2g040850 | 53.595 | 153 | 57 | 4 | 1 | 142 | 1 | 150 | 2.43e-42 | 147 |
| MS.gene83630.t1 | MTR_2g040850 | 50.000 | 126 | 54 | 4 | 198 | 320 | 122 | 241 | 4.75e-26 | 104 |
| MS.gene83630.t1 | MTR_4g077310 | 43.158 | 95 | 48 | 3 | 204 | 298 | 3 | 91 | 7.99e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83630.t1 | AT5G24090 | 46.205 | 303 | 153 | 7 | 3 | 300 | 5 | 302 | 1.48e-89 | 270 |
Find 69 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTTTCCTCAATGTCTT+TGG | 0.217357 | 2.1:-49064248 | MS.gene83630:CDS |
| ATAAAACACTGTCAAGAAAA+AGG | 0.225882 | 2.1:-49064146 | MS.gene83630:CDS |
| CCCATGAAAACGGTATTATT+TGG | 0.251275 | 2.1:+49061666 | None:intergenic |
| AACTTTCTTAGTGGTCAATT+TGG | 0.254606 | 2.1:-49064038 | MS.gene83630:CDS |
| ATAGTTGGAAGTTGGTTTAA+TGG | 0.284816 | 2.1:+49061566 | None:intergenic |
| TTACTTTCCCTCAGAGCATT+AGG | 0.302991 | 2.1:-49064113 | MS.gene83630:CDS |
| AAGGAGGTACAAATCTTTAC+TGG | 0.304361 | 2.1:-49063971 | MS.gene83630:CDS |
| ATTAAACCAACTTCCAACTA+TGG | 0.306183 | 2.1:-49061564 | MS.gene83630:CDS |
| GTTAAAATCAACACCATCTA+AGG | 0.310593 | 2.1:+49063998 | None:intergenic |
| ACCAGATGATCTCATTTCTA+AGG | 0.326123 | 2.1:-49061598 | MS.gene83630:CDS |
| ATGGTGGCATTGCCGTCTAC+TGG | 0.329897 | 2.1:-49064337 | MS.gene83630:CDS |
| CTTGGAAGTGTTACCTTAGA+TGG | 0.333989 | 2.1:-49064011 | MS.gene83630:CDS |
| CTCTATACTAACTTTCTTAG+TGG | 0.345832 | 2.1:-49064047 | MS.gene83630:CDS |
| AGCACAAAATGGATACAAAA+AGG | 0.354708 | 2.1:-49064424 | None:intergenic |
| TAATTTCGAGATTGTACTCT+TGG | 0.374143 | 2.1:-49064267 | MS.gene83630:CDS |
| CTTGACAAAGCTATCAAAAC+TGG | 0.380969 | 2.1:-49061807 | MS.gene83630:CDS |
| CTATGGAGGAATTATGCTTT+GGG | 0.391332 | 2.1:-49061547 | MS.gene83630:CDS |
| GTAATCTGGCATATAACATT+GGG | 0.392231 | 2.1:+49061833 | None:intergenic |
| ACTATGGAGGAATTATGCTT+TGG | 0.402308 | 2.1:-49061548 | MS.gene83630:CDS |
| TGGTGGCATTGCCGTCTACT+GGG | 0.405455 | 2.1:-49064336 | MS.gene83630:CDS |
| GCTTTCCTCAATGTCTTTGG+AGG | 0.413044 | 2.1:-49064245 | MS.gene83630:CDS |
| TGATTTGCAAAGTTCAAACT+TGG | 0.417925 | 2.1:+49064212 | None:intergenic |
| TAGCTTCTTCTGGTGAGCTA+AGG | 0.426254 | 2.1:+49064087 | None:intergenic |
| TGATTACAGCTATCAGATAA+AGG | 0.427044 | 2.1:-49061499 | MS.gene83630:CDS |
| CTACATTGCTCTTAAAATCA+TGG | 0.429928 | 2.1:-49061713 | MS.gene83630:CDS |
| ACCTTAGAAATGAGATCATC+TGG | 0.432094 | 2.1:+49061597 | None:intergenic |
| TTCCTCAATGTCTTTGGAGG+AGG | 0.446588 | 2.1:-49064242 | MS.gene83630:CDS |
| AGCTTCTTCTGGTGAGCTAA+GGG | 0.448193 | 2.1:+49064088 | None:intergenic |
| TGGGATAGATTTCATGATGT+TGG | 0.451538 | 2.1:-49061528 | MS.gene83630:CDS |
| ACAATCTAAGACAACAAAAC+AGG | 0.458920 | 2.1:-49063926 | MS.gene83630:intron |
| AAGCATAATTCCTCCATAGT+TGG | 0.460777 | 2.1:+49061551 | None:intergenic |
| TCTTAAAATCATGGAATGCT+TGG | 0.464778 | 2.1:-49061704 | MS.gene83630:CDS |
| CAAGTTTCAGAGGCAATAGC+TGG | 0.480314 | 2.1:-49061441 | MS.gene83630:CDS |
| ATTCCTCCATAGTTGGAAGT+TGG | 0.484513 | 2.1:+49061558 | None:intergenic |
| TTTGTTGTCTTAGATTGTCA+AGG | 0.485852 | 2.1:+49063931 | None:intergenic |
| GCTTTGTCAAGGTAGTAATC+TGG | 0.487955 | 2.1:+49061819 | None:intergenic |
| TTTACTGGGATGACCTTGCT+AGG | 0.501225 | 2.1:-49063956 | MS.gene83630:CDS |
| TTGGAAGTTGGTTTAATGGA+AGG | 0.522478 | 2.1:+49061570 | None:intergenic |
| AGTAATCTGGCATATAACAT+TGG | 0.524590 | 2.1:+49061832 | None:intergenic |
| GGAGCTGCATCAGGTGATGC+TGG | 0.526731 | 2.1:+49061639 | None:intergenic |
| CACTAAGAAAGTTAGTATAG+AGG | 0.529347 | 2.1:+49064048 | None:intergenic |
| TGCTGGTAGTCCCATGAAAA+CGG | 0.529775 | 2.1:+49061656 | None:intergenic |
| CCACCACTAGGAGCTGCATC+AGG | 0.548590 | 2.1:+49061630 | None:intergenic |
| GATTTGCAAAGTTCAAACTT+GGG | 0.564533 | 2.1:+49064213 | None:intergenic |
| AGTGGTCAATTTGGTCCACT+TGG | 0.566066 | 2.1:-49064029 | MS.gene83630:CDS |
| AAGGGCTCCTAATGCTCTGA+GGG | 0.572834 | 2.1:+49064106 | None:intergenic |
| TATGATTTAATTCGTAAACA+TGG | 0.576145 | 2.1:+49061395 | None:intergenic |
| TTGAACTTTGCAAATCATTG+TGG | 0.576615 | 2.1:-49064206 | MS.gene83630:CDS |
| TTCCTCCTCCAAAGACATTG+AGG | 0.584718 | 2.1:+49064240 | None:intergenic |
| TGATGATGCTTTGATAGTGA+AGG | 0.585896 | 2.1:+49064364 | None:intergenic |
| TTACTGGGATGACCTTGCTA+GGG | 0.587273 | 2.1:-49063955 | MS.gene83630:CDS |
| AGGAGGTACAAATCTTTACT+GGG | 0.587554 | 2.1:-49063970 | MS.gene83630:CDS |
| TGGGGCCAAAACGTAAAAGA+AGG | 0.591748 | 2.1:-49064317 | MS.gene83630:CDS |
| GATTGTCAAGGTCCCTAGCA+AGG | 0.595500 | 2.1:+49063943 | None:intergenic |
| ATATTGTCAAGACTAACAAA+AGG | 0.600315 | 2.1:+49064390 | None:intergenic |
| ATCAAAGCATCATCAAGTGA+TGG | 0.610130 | 2.1:-49064356 | MS.gene83630:CDS |
| TTGACATCAACATGTGACAC+TGG | 0.615620 | 2.1:-49064290 | MS.gene83630:CDS |
| GATGATGCTTTGATAGTGAA+GGG | 0.636457 | 2.1:+49064365 | None:intergenic |
| AAACCAACTTCCAACTATGG+AGG | 0.642148 | 2.1:-49061561 | MS.gene83630:CDS |
| AAAGCATCATCAAGTGATGG+TGG | 0.646449 | 2.1:-49064353 | MS.gene83630:CDS |
| TCACCTGATGCAGCTCCTAG+TGG | 0.649095 | 2.1:-49061633 | MS.gene83630:CDS |
| TAAGGGCTCCTAATGCTCTG+AGG | 0.652053 | 2.1:+49064105 | None:intergenic |
| CCTGATGCAGCTCCTAGTGG+TGG | 0.652514 | 2.1:-49061630 | MS.gene83630:CDS |
| GGTGGCATTGCCGTCTACTG+GGG | 0.654303 | 2.1:-49064335 | MS.gene83630:CDS |
| AGTGTCACATGTTGATGTCA+AGG | 0.656681 | 2.1:+49064292 | None:intergenic |
| TAATCTGGCATATAACATTG+GGG | 0.697221 | 2.1:+49061834 | None:intergenic |
| GGTGGTATATAACCACCACT+AGG | 0.701616 | 2.1:+49061618 | None:intergenic |
| TCTAAGGTAACACTTCCAAG+TGG | 0.714737 | 2.1:+49064014 | None:intergenic |
| TTAGAAATGAGATCATCTGG+TGG | 0.728954 | 2.1:+49061600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGAGAAAATATAATAT+AGG | - | chr2.1:49062478-49062497 | MS.gene83630:intron | 10.0% |
| !! | TAATAAATATTTACCATTTA+TGG | - | chr2.1:49063592-49063611 | MS.gene83630:intron | 10.0% |
| !!! | AAATGATGTTTTTTTTTTAT+GGG | + | chr2.1:49063797-49063816 | None:intergenic | 10.0% |
| !!! | TATTTTTCTTTGAAAAAATA+TGG | + | chr2.1:49062371-49062390 | None:intergenic | 10.0% |
| !! | ATACTTATGTTACAAATATT+TGG | + | chr2.1:49063047-49063066 | None:intergenic | 15.0% |
| !! | TACTTATGTTACAAATATTT+GGG | + | chr2.1:49063046-49063065 | None:intergenic | 15.0% |
| !!! | GAAATGATGTTTTTTTTTTA+TGG | + | chr2.1:49063798-49063817 | None:intergenic | 15.0% |
| !!! | TATCCATTCTAAAATTATTA+TGG | + | chr2.1:49062802-49062821 | None:intergenic | 15.0% |
| !!! | TTAATTTATTGATTTATGAC+AGG | + | chr2.1:49063715-49063734 | None:intergenic | 15.0% |
| !!! | TTTTCAAAGAAAAATATGTA+TGG | - | chr2.1:49062375-49062394 | MS.gene83630:intron | 15.0% |
| !!! | TTTTTTTTATCATATTGACA+TGG | + | chr2.1:49064076-49064095 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATCTCTTGC+AGG | - | chr2.1:49063939-49063958 | MS.gene83630:CDS | 20.0% |
| !! | AAAAAATATGGTTGTTCATT+AGG | + | chr2.1:49062359-49062378 | None:intergenic | 20.0% |
| !! | AAATATAATGTGAGTATAAG+AGG | - | chr2.1:49062426-49062445 | MS.gene83630:intron | 20.0% |
| !! | AGCATAATGCTATAATATAT+TGG | - | chr2.1:49063647-49063666 | MS.gene83630:intron | 20.0% |
| !! | AGTATTATATGAACTAGTAT+TGG | - | chr2.1:49062872-49062891 | MS.gene83630:intron | 20.0% |
| !! | ATATTCACATTATACACTTT+AGG | + | chr2.1:49062463-49062482 | None:intergenic | 20.0% |
| !! | ATCTTTAAATTAAAGTGTAC+CGG | - | chr2.1:49063685-49063704 | MS.gene83630:intron | 20.0% |
| !! | GCATAATGCTATAATATATT+GGG | - | chr2.1:49063648-49063667 | MS.gene83630:intron | 20.0% |
| !! | TAAAGAAATATATCATGACA+TGG | + | chr2.1:49062215-49062234 | None:intergenic | 20.0% |
| !! | TAGAATGGATATAGTAAAAA+AGG | - | chr2.1:49062811-49062830 | MS.gene83630:intron | 20.0% |
| !!! | AAAAGGTTGATTTGTTAATT+AGG | + | chr2.1:49063897-49063916 | None:intergenic | 20.0% |
| !!! | AAAGGTTGATTTGTTAATTA+GGG | + | chr2.1:49063896-49063915 | None:intergenic | 20.0% |
| !!! | ACGGAAAATACTTTTTTTTA+GGG | + | chr2.1:49063081-49063100 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTTTTTTGAGAG+AGG | + | chr2.1:49063934-49063953 | None:intergenic | 20.0% |
| !!! | CTAGTACTTTTTTTTTGAAT+CGG | + | chr2.1:49061968-49061987 | None:intergenic | 20.0% |
| !!! | TACGGAAAATACTTTTTTTT+AGG | + | chr2.1:49063082-49063101 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTTAGGGAAATA+CGG | + | chr2.1:49063073-49063092 | None:intergenic | 20.0% |
| !!! | TAGTACTTTTTTTTTGAATC+GGG | + | chr2.1:49061967-49061986 | None:intergenic | 20.0% |
| !!! | TGCTTACTTTTATTTATGTT+TGG | + | chr2.1:49062639-49062658 | None:intergenic | 20.0% |
| !!! | TTTAACTTAAGAAAGTAGAA+TGG | - | chr2.1:49063237-49063256 | MS.gene83630:intron | 20.0% |
| !!! | TTTTTTATAAAATTGGGATG+TGG | + | chr2.1:49062096-49062115 | None:intergenic | 20.0% |
| ! | ATAAAACACTGTCAAGAAAA+AGG | - | chr2.1:49061671-49061690 | MS.gene83630:CDS | 25.0% |
| ! | ATATTGTCAAGACTAACAAA+AGG | + | chr2.1:49061430-49061449 | None:intergenic | 25.0% |
| ! | TAAAACACTGTCAAGAAAAA+GGG | - | chr2.1:49061672-49061691 | MS.gene83630:CDS | 25.0% |
| ! | TAATATATTGGGAGTTTCTA+CGG | - | chr2.1:49063659-49063678 | MS.gene83630:intron | 25.0% |
| ! | TGCAAATAAACGGATATAAT+TGG | - | chr2.1:49063411-49063430 | MS.gene83630:intron | 25.0% |
| ! | TTAGGATGTTAAATAAAACG+TGG | + | chr2.1:49062341-49062360 | None:intergenic | 25.0% |
| !! | CAAAAATTTTCACTTGTCTT+CGG | + | chr2.1:49063280-49063299 | None:intergenic | 25.0% |
| !! | GTTGAAATTTTACAATCTCA+GGG | - | chr2.1:49063433-49063452 | MS.gene83630:intron | 25.0% |
| !! | TTATATGAACTAGTATTGGA+TGG | - | chr2.1:49062876-49062895 | MS.gene83630:intron | 25.0% |
| !! | TTGAAATTTTACAATCTCAG+GGG | - | chr2.1:49063434-49063453 | MS.gene83630:intron | 25.0% |
| !! | TTTTATCATATTGACATGGA+GGG | + | chr2.1:49064072-49064091 | None:intergenic | 25.0% |
| !! | TTTTTATCATATTGACATGG+AGG | + | chr2.1:49064073-49064092 | None:intergenic | 25.0% |
| !!! | GCTCCATAATAATTTTAGAA+TGG | - | chr2.1:49062796-49062815 | MS.gene83630:intron | 25.0% |
| !!! | TTCTTGACAGTGTTTTATTT+CGG | + | chr2.1:49061669-49061688 | None:intergenic | 25.0% |
| AACTTTCTTAGTGGTCAATT+TGG | - | chr2.1:49061779-49061798 | MS.gene83630:CDS | 30.0% | |
| AGTAATCTGGCATATAACAT+TGG | + | chr2.1:49063988-49064007 | None:intergenic | 30.0% | |
| ATTAAACCAACTTCCAACTA+TGG | - | chr2.1:49064253-49064272 | MS.gene83630:CDS | 30.0% | |
| ATTGGATGGACACAATATAA+GGG | - | chr2.1:49062890-49062909 | MS.gene83630:intron | 30.0% | |
| CACTAAGAAAGTTAGTATAG+AGG | + | chr2.1:49061772-49061791 | None:intergenic | 30.0% | |
| CACTTCAAATTAAGTTCTCA+GGG | + | chr2.1:49063178-49063197 | None:intergenic | 30.0% | |
| CATGTTAAGGATTCCATAAA+TGG | + | chr2.1:49063608-49063627 | None:intergenic | 30.0% | |
| CCCAGTTTGCATATTTAATA+CGG | + | chr2.1:49063100-49063119 | None:intergenic | 30.0% | |
| CCGTATTAAATATGCAAACT+GGG | - | chr2.1:49063097-49063116 | MS.gene83630:intron | 30.0% | |
| CTACATTGCTCTTAAAATCA+TGG | - | chr2.1:49064104-49064123 | MS.gene83630:CDS | 30.0% | |
| CTCTATACTAACTTTCTTAG+TGG | - | chr2.1:49061770-49061789 | MS.gene83630:CDS | 30.0% | |
| GATTTGCAAAGTTCAAACTT+GGG | + | chr2.1:49061607-49061626 | None:intergenic | 30.0% | |
| GGTGCAAAATAAATTTCTCA+GGG | - | chr2.1:49063380-49063399 | MS.gene83630:intron | 30.0% | |
| GTAATCTGGCATATAACATT+GGG | + | chr2.1:49063987-49064006 | None:intergenic | 30.0% | |
| GTTAAAATCAACACCATCTA+AGG | + | chr2.1:49061822-49061841 | None:intergenic | 30.0% | |
| TAATCTGGCATATAACATTG+GGG | + | chr2.1:49063986-49064005 | None:intergenic | 30.0% | |
| TAATTTCGAGATTGTACTCT+TGG | - | chr2.1:49061550-49061569 | MS.gene83630:CDS | 30.0% | |
| TATGCTAACTTGAGTTCTTA+AGG | + | chr2.1:49063633-49063652 | None:intergenic | 30.0% | |
| TATTGGATGGACACAATATA+AGG | - | chr2.1:49062889-49062908 | MS.gene83630:intron | 30.0% | |
| TCACTTCAAATTAAGTTCTC+AGG | + | chr2.1:49063179-49063198 | None:intergenic | 30.0% | |
| TCCGTATTAAATATGCAAAC+TGG | - | chr2.1:49063096-49063115 | MS.gene83630:intron | 30.0% | |
| TCTTAAAATCATGGAATGCT+TGG | - | chr2.1:49064113-49064132 | MS.gene83630:CDS | 30.0% | |
| TGATTACAGCTATCAGATAA+AGG | - | chr2.1:49064318-49064337 | MS.gene83630:CDS | 30.0% | |
| TGGTGCAAAATAAATTTCTC+AGG | - | chr2.1:49063379-49063398 | MS.gene83630:intron | 30.0% | |
| TTGAACTTTGCAAATCATTG+TGG | - | chr2.1:49061611-49061630 | MS.gene83630:CDS | 30.0% | |
| ! | ACAATCTAAGACAACAAAAC+AGG | - | chr2.1:49061891-49061910 | MS.gene83630:intron | 30.0% |
| ! | ACCAAATAATACCGTTTTCA+TGG | - | chr2.1:49064150-49064169 | MS.gene83630:CDS | 30.0% |
| ! | ATAGTTGGAAGTTGGTTTAA+TGG | + | chr2.1:49064254-49064273 | None:intergenic | 30.0% |
| ! | CCAAATAATACCGTTTTCAT+GGG | - | chr2.1:49064151-49064170 | MS.gene83630:CDS | 30.0% |
| ! | GGTTGAAATTTTACAATCTC+AGG | - | chr2.1:49063432-49063451 | MS.gene83630:intron | 30.0% |
| ! | TGAAATTTTACAATCTCAGG+GGG | - | chr2.1:49063435-49063454 | MS.gene83630:intron | 30.0% |
| ! | TGATTTGCAAAGTTCAAACT+TGG | + | chr2.1:49061608-49061627 | None:intergenic | 30.0% |
| ! | TTTGTTGTCTTAGATTGTCA+AGG | + | chr2.1:49061889-49061908 | None:intergenic | 30.0% |
| !! | GTTGATTTTAACATTGAAGG+AGG | - | chr2.1:49061830-49061849 | MS.gene83630:CDS | 30.0% |
| !! | TATAGTTTCAAGTTGTACAG+CGG | + | chr2.1:49062008-49062027 | None:intergenic | 30.0% |
| !!! | GGTGTTGATTTTAACATTGA+AGG | - | chr2.1:49061827-49061846 | MS.gene83630:CDS | 30.0% |
| !!! | TTTTAAGACACAAGTTTCAG+AGG | - | chr2.1:49064366-49064385 | MS.gene83630:CDS | 30.0% |
| AAATATGCAAACTGGGAACT+TGG | - | chr2.1:49063104-49063123 | MS.gene83630:intron | 35.0% | |
| AAGCATAATTCCTCCATAGT+TGG | + | chr2.1:49064269-49064288 | None:intergenic | 35.0% | |
| ACATGTTAAGGAACTTAAGG+TGG | - | chr2.1:49063509-49063528 | MS.gene83630:intron | 35.0% | |
| ACCAGATGATCTCATTTCTA+AGG | - | chr2.1:49064219-49064238 | MS.gene83630:CDS | 35.0% | |
| ACCTTAGAAATGAGATCATC+TGG | + | chr2.1:49064223-49064242 | None:intergenic | 35.0% | |
| ACTATGGAGGAATTATGCTT+TGG | - | chr2.1:49064269-49064288 | MS.gene83630:CDS | 35.0% | |
| AGTTCTTAAGGCACATGTTA+AGG | + | chr2.1:49063621-49063640 | None:intergenic | 35.0% | |
| ATGACATGGAGATATCAGAA+AGG | + | chr2.1:49062201-49062220 | None:intergenic | 35.0% | |
| ATGATCAAGACTTTAGCACA+TGG | + | chr2.1:49063130-49063149 | None:intergenic | 35.0% | |
| CCCATGAAAACGGTATTATT+TGG | + | chr2.1:49064154-49064173 | None:intergenic | 35.0% | |
| CTATGGAGGAATTATGCTTT+GGG | - | chr2.1:49064270-49064289 | MS.gene83630:CDS | 35.0% | |
| CTTATTCTTTACGCACACAA+AGG | + | chr2.1:49062263-49062282 | None:intergenic | 35.0% | |
| CTTGACAAAGCTATCAAAAC+TGG | - | chr2.1:49064010-49064029 | MS.gene83630:CDS | 35.0% | |
| CTTTGTGTGCGTAAAGAATA+AGG | - | chr2.1:49062261-49062280 | MS.gene83630:intron | 35.0% | |
| GAAGGTGAGATAAGAATAAC+TGG | - | chr2.1:49063323-49063342 | MS.gene83630:intron | 35.0% | |
| GTTAAATAAAACGTGGTGTC+TGG | + | chr2.1:49062334-49062353 | None:intergenic | 35.0% | |
| TGGGATAGATTTCATGATGT+TGG | - | chr2.1:49064289-49064308 | MS.gene83630:CDS | 35.0% | |
| TTAGAAATGAGATCATCTGG+TGG | + | chr2.1:49064220-49064239 | None:intergenic | 35.0% | |
| TTGATTTATGACAGGTGTAC+CGG | + | chr2.1:49063707-49063726 | None:intergenic | 35.0% | |
| ! | AAGATGAAGAACCCTGTTTT+GGG | + | chr2.1:49062146-49062165 | None:intergenic | 35.0% |
| ! | AAGGAGGTACAAATCTTTAC+TGG | - | chr2.1:49061846-49061865 | MS.gene83630:CDS | 35.0% |
| ! | AGGAGGTACAAATCTTTACT+GGG | - | chr2.1:49061847-49061866 | MS.gene83630:CDS | 35.0% |
| ! | ATCAAAGCATCATCAAGTGA+TGG | - | chr2.1:49061461-49061480 | MS.gene83630:CDS | 35.0% |
| ! | ATCAACCTTTTATCTCTTGC+AGG | - | chr2.1:49063906-49063925 | MS.gene83630:intron | 35.0% |
| ! | TTGGAAGTTGGTTTAATGGA+AGG | + | chr2.1:49064250-49064269 | None:intergenic | 35.0% |
| !! | GATGATGCTTTGATAGTGAA+GGG | + | chr2.1:49061455-49061474 | None:intergenic | 35.0% |
| !! | TGATGATGCTTTGATAGTGA+AGG | + | chr2.1:49061456-49061475 | None:intergenic | 35.0% |
| !!! | CAGTTTTGATAGCTTTGTCA+AGG | + | chr2.1:49064012-49064031 | None:intergenic | 35.0% |
| !!! | GAAACAGTTTTAGCTTCTTC+TGG | + | chr2.1:49061743-49061762 | None:intergenic | 35.0% |
| !!! | TTAACTTGTGCTTTTAGCAG+TGG | - | chr2.1:49062507-49062526 | MS.gene83630:intron | 35.0% |
| AAACCAACTTCCAACTATGG+AGG | - | chr2.1:49064256-49064275 | MS.gene83630:CDS | 40.0% | |
| AGGTACCTGCAAGAGATAAA+AGG | + | chr2.1:49063914-49063933 | None:intergenic | 40.0% | |
| AGTGTCACATGTTGATGTCA+AGG | + | chr2.1:49061528-49061547 | None:intergenic | 40.0% | |
| ATTCCTCCATAGTTGGAAGT+TGG | + | chr2.1:49064262-49064281 | None:intergenic | 40.0% | |
| CTCAAAGTGAAACAACATGC+TGG | - | chr2.1:49063359-49063378 | MS.gene83630:intron | 40.0% | |
| CTGTCAAGAAAAAGGGTTCA+AGG | - | chr2.1:49061679-49061698 | MS.gene83630:CDS | 40.0% | |
| GCGTAAAGAATAAGGTTGCT+TGG | - | chr2.1:49062269-49062288 | MS.gene83630:intron | 40.0% | |
| GCTTTGTCAAGGTAGTAATC+TGG | + | chr2.1:49064001-49064020 | None:intergenic | 40.0% | |
| GGCACATGTTAAGGAACTTA+AGG | - | chr2.1:49063506-49063525 | MS.gene83630:intron | 40.0% | |
| GGTGTGCAAGTGCAAATAAA+CGG | - | chr2.1:49063401-49063420 | MS.gene83630:intron | 40.0% | |
| TTGACATCAACATGTGACAC+TGG | - | chr2.1:49061527-49061546 | MS.gene83630:CDS | 40.0% | |
| ! | AAAGCATCATCAAGTGATGG+TGG | - | chr2.1:49061464-49061483 | MS.gene83630:CDS | 40.0% |
| ! | AGGTGCCTTCTTTTACGTTT+TGG | + | chr2.1:49061508-49061527 | None:intergenic | 40.0% |
| ! | CAGGTACTTTTACTTGTCTG+CGG | - | chr2.1:49063958-49063977 | MS.gene83630:CDS | 40.0% |
| ! | GAAGATGAAGAACCCTGTTT+TGG | + | chr2.1:49062147-49062166 | None:intergenic | 40.0% |
| ! | TCTAAGGTAACACTTCCAAG+TGG | + | chr2.1:49061806-49061825 | None:intergenic | 40.0% |
| ! | TTACTTTCCCTCAGAGCATT+AGG | - | chr2.1:49061704-49061723 | MS.gene83630:CDS | 40.0% |
| ! | TTGGCTTTCCTCAATGTCTT+TGG | - | chr2.1:49061569-49061588 | MS.gene83630:CDS | 40.0% |
| !! | CGGATTCGAGTTTTGTACAA+GGG | + | chr2.1:49061649-49061668 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGTTACCTTAGA+TGG | - | chr2.1:49061806-49061825 | MS.gene83630:CDS | 40.0% |
| !! | TCGGATTCGAGTTTTGTACA+AGG | + | chr2.1:49061650-49061669 | None:intergenic | 40.0% |
| AAAGAAACTGGCATCTGGCT+TGG | - | chr2.1:49062298-49062317 | MS.gene83630:intron | 45.0% | |
| AACATGTGCCCTAAGAACCA+GGG | + | chr2.1:49063496-49063515 | None:intergenic | 45.0% | |
| AAGCCAGATGCCAGTTTCTT+TGG | + | chr2.1:49062299-49062318 | None:intergenic | 45.0% | |
| AGACCAAAGAAACTGGCATC+TGG | - | chr2.1:49062293-49062312 | MS.gene83630:intron | 45.0% | |
| AGCTTCTTCTGGTGAGCTAA+GGG | + | chr2.1:49061732-49061751 | None:intergenic | 45.0% | |
| AGTGGTCAATTTGGTCCACT+TGG | - | chr2.1:49061788-49061807 | MS.gene83630:CDS | 45.0% | |
| CAAGTTTCAGAGGCAATAGC+TGG | - | chr2.1:49064376-49064395 | MS.gene83630:CDS | 45.0% | |
| CTTGACCACATCCCAAAACA+GGG | - | chr2.1:49062132-49062151 | MS.gene83630:intron | 45.0% | |
| GCTTGGTAGACCAAAGAAAC+TGG | - | chr2.1:49062286-49062305 | MS.gene83630:intron | 45.0% | |
| GCTTTCCTCAATGTCTTTGG+AGG | - | chr2.1:49061572-49061591 | MS.gene83630:CDS | 45.0% | |
| GGTGGTATATAACCACCACT+AGG | + | chr2.1:49064202-49064221 | None:intergenic | 45.0% | |
| GGTTCTTAGGGCACATGTTA+AGG | - | chr2.1:49063497-49063516 | MS.gene83630:intron | 45.0% | |
| TAACATGTGCCCTAAGAACC+AGG | + | chr2.1:49063497-49063516 | None:intergenic | 45.0% | |
| TAGCTTCTTCTGGTGAGCTA+AGG | + | chr2.1:49061733-49061752 | None:intergenic | 45.0% | |
| TCACCTTCTGACGCATAAAG+AGG | + | chr2.1:49063311-49063330 | None:intergenic | 45.0% | |
| TCTTGACCACATCCCAAAAC+AGG | - | chr2.1:49062131-49062150 | MS.gene83630:intron | 45.0% | |
| TGCTGGTAGTCCCATGAAAA+CGG | + | chr2.1:49064164-49064183 | None:intergenic | 45.0% | |
| TGGGGCCAAAACGTAAAAGA+AGG | - | chr2.1:49061500-49061519 | MS.gene83630:CDS | 45.0% | |
| TTACTGGGATGACCTTGCTA+GGG | - | chr2.1:49061862-49061881 | MS.gene83630:intron | 45.0% | |
| TTCCTCCTCCAAAGACATTG+AGG | + | chr2.1:49061580-49061599 | None:intergenic | 45.0% | |
| TTTACTGGGATGACCTTGCT+AGG | - | chr2.1:49061861-49061880 | MS.gene83630:intron | 45.0% | |
| ! | AAAACGTGGTGTCTGGTCTT+TGG | + | chr2.1:49062327-49062346 | None:intergenic | 45.0% |
| ! | AAGAAACTGGCATCTGGCTT+GGG | - | chr2.1:49062299-49062318 | MS.gene83630:intron | 45.0% |
| ! | TTCCTCAATGTCTTTGGAGG+AGG | - | chr2.1:49061575-49061594 | MS.gene83630:CDS | 45.0% |
| !! | GAGTTTTGTACAAGGGCTCT+CGG | + | chr2.1:49061642-49061661 | None:intergenic | 45.0% |
| !!! | AAGAACCCTGTTTTGGGATG+TGG | + | chr2.1:49062140-49062159 | None:intergenic | 45.0% |
| !!! | AAATATCTTTTTTATAAAAT+TGG | + | chr2.1:49062103-49062122 | None:intergenic | 5.0% |
| !!! | AATATCTTTTTTATAAAATT+GGG | + | chr2.1:49062102-49062121 | None:intergenic | 5.0% |
| AAGGGCTCCTAATGCTCTGA+GGG | + | chr2.1:49061714-49061733 | None:intergenic | 50.0% | |
| ACATGTGCCCTAAGAACCAG+GGG | + | chr2.1:49063495-49063514 | None:intergenic | 50.0% | |
| AGGCACGTGCAACACAGATT+TGG | + | chr2.1:49062243-49062262 | None:intergenic | 50.0% | |
| GATTGTCAAGGTCCCTAGCA+AGG | + | chr2.1:49061877-49061896 | None:intergenic | 50.0% | |
| GCACCTCTTTATGCGTCAGA+AGG | - | chr2.1:49063305-49063324 | MS.gene83630:intron | 50.0% | |
| GGCACGTGCAACACAGATTT+GGG | + | chr2.1:49062242-49062261 | None:intergenic | 50.0% | |
| TAAGGGCTCCTAATGCTCTG+AGG | + | chr2.1:49061715-49061734 | None:intergenic | 50.0% | |
| ! | CTTTTAGCAGTGGCGTATCC+AGG | - | chr2.1:49062517-49062536 | MS.gene83630:intron | 50.0% |
| ! | TTTACAATCTCAGGGGGTGC+AGG | - | chr2.1:49063441-49063460 | MS.gene83630:intron | 50.0% |
| !! | TACGTTTTGGCCCCAGTAGA+CGG | + | chr2.1:49061495-49061514 | None:intergenic | 50.0% |
| ATGGTGGCATTGCCGTCTAC+TGG | - | chr2.1:49061480-49061499 | MS.gene83630:CDS | 55.0% | |
| TCACCTGATGCAGCTCCTAG+TGG | - | chr2.1:49064184-49064203 | MS.gene83630:CDS | 55.0% | |
| TGGTGGCATTGCCGTCTACT+GGG | - | chr2.1:49061481-49061500 | MS.gene83630:CDS | 55.0% | |
| AGGTGCACACCCTCGCTAAG+AGG | - | chr2.1:49063461-49063480 | MS.gene83630:intron | 60.0% | |
| AGTGGCGTATCCAGGACCCT+GGG | - | chr2.1:49062525-49062544 | MS.gene83630:intron | 60.0% | |
| CCACCACTAGGAGCTGCATC+AGG | + | chr2.1:49064190-49064209 | None:intergenic | 60.0% | |
| CCTGATGCAGCTCCTAGTGG+TGG | - | chr2.1:49064187-49064206 | MS.gene83630:CDS | 60.0% | |
| GGAGCTGCATCAGGTGATGC+TGG | + | chr2.1:49064181-49064200 | None:intergenic | 60.0% | |
| GGTGGCATTGCCGTCTACTG+GGG | - | chr2.1:49061482-49061501 | MS.gene83630:CDS | 60.0% | |
| GTATCCAGGACCCTGGGTCA+GGG | - | chr2.1:49062531-49062550 | MS.gene83630:intron | 60.0% | |
| TATCCAGGACCCTGGGTCAG+GGG | - | chr2.1:49062532-49062551 | MS.gene83630:intron | 60.0% | |
| TGCACACCCTCGCTAAGAGG+TGG | - | chr2.1:49063464-49063483 | MS.gene83630:intron | 60.0% | |
| TGTGCCCTAAGAACCAGGGG+CGG | + | chr2.1:49063492-49063511 | None:intergenic | 60.0% | |
| !! | GTCAGGGGGTGCGGAGTTTT+TGG | - | chr2.1:49062547-49062566 | MS.gene83630:intron | 60.0% |
| ATCCAGGACCCTGGGTCAGG+GGG | - | chr2.1:49062533-49062552 | MS.gene83630:intron | 65.0% | |
| CAGTGGCGTATCCAGGACCC+TGG | - | chr2.1:49062524-49062543 | MS.gene83630:intron | 65.0% | |
| CGTATCCAGGACCCTGGGTC+AGG | - | chr2.1:49062530-49062549 | MS.gene83630:intron | 65.0% | |
| GCGGAGCCACCTCTTAGCGA+GGG | + | chr2.1:49063473-49063492 | None:intergenic | 65.0% | |
| ! | GGCTCCGCCCCTGGTTCTTA+GGG | - | chr2.1:49063485-49063504 | MS.gene83630:intron | 65.0% |
| ! | TGGCTCCGCCCCTGGTTCTT+AGG | - | chr2.1:49063484-49063503 | MS.gene83630:intron | 65.0% |
| AACTCCGCACCCCCTGACCC+AGG | + | chr2.1:49062545-49062564 | None:intergenic | 70.0% | |
| ACTCCGCACCCCCTGACCCA+GGG | + | chr2.1:49062544-49062563 | None:intergenic | 70.0% | |
| CTAAGAGGTGGCTCCGCCCC+TGG | - | chr2.1:49063476-49063495 | MS.gene83630:intron | 70.0% | |
| GGCGGAGCCACCTCTTAGCG+AGG | + | chr2.1:49063474-49063493 | None:intergenic | 70.0% | |
| CACCCCCTGACCCAGGGTCC+TGG | + | chr2.1:49062538-49062557 | None:intergenic | 75.0% | |
| GGACCCTGGGTCAGGGGGTG+CGG | - | chr2.1:49062538-49062557 | MS.gene83630:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 49061401 | 49064438 | 49061401 | ID=MS.gene83630 |
| chr2.1 | mRNA | 49061401 | 49064438 | 49061401 | ID=MS.gene83630.t1;Parent=MS.gene83630 |
| chr2.1 | exon | 49063927 | 49064438 | 49063927 | ID=MS.gene83630.t1.exon1;Parent=MS.gene83630.t1 |
| chr2.1 | CDS | 49063927 | 49064438 | 49063927 | ID=cds.MS.gene83630.t1;Parent=MS.gene83630.t1 |
| chr2.1 | exon | 49061401 | 49061878 | 49061401 | ID=MS.gene83630.t1.exon2;Parent=MS.gene83630.t1 |
| chr2.1 | CDS | 49061401 | 49061878 | 49061401 | ID=cds.MS.gene83630.t1;Parent=MS.gene83630.t1 |
| Gene Sequence |
| Protein sequence |
