AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053227

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053227.t1 MTR_4g006730 99.672 305 1 0 1 305 1 305 0.0 611
MS.gene053227.t1 MTR_2g104940 83.226 310 44 3 1 305 4 310 3.70e-176 489
MS.gene053227.t1 MTR_4g006730 99.578 237 1 0 1 237 1 237 1.73e-171 476
MS.gene053227.t1 MTR_4g006730 100.000 218 0 0 88 305 1 218 5.46e-155 432
MS.gene053227.t1 MTR_4g006630 99.541 218 1 0 88 305 1 218 1.95e-154 431
MS.gene053227.t1 MTR_1g097840 59.028 288 103 2 7 288 9 287 1.77e-112 327
MS.gene053227.t1 MTR_1g097840 52.555 274 110 3 7 274 9 268 2.00e-84 255
MS.gene053227.t1 MTR_4g006650 92.908 141 1 1 76 216 5 136 5.32e-84 256
MS.gene053227.t1 MTR_8g087710 53.680 231 102 2 71 298 35 263 6.96e-78 238
MS.gene053227.t1 MTR_8g087720 53.744 227 100 2 75 298 38 262 7.72e-77 236
MS.gene053227.t1 MTR_2g017660 55.349 215 95 1 71 284 35 249 8.50e-74 228
MS.gene053227.t1 MTR_7g010650 46.311 244 129 1 61 304 23 264 3.77e-73 226
MS.gene053227.t1 MTR_2g017590 48.594 249 121 2 54 298 15 260 7.81e-72 223
MS.gene053227.t1 MTR_2g017610 51.261 238 107 3 71 305 34 265 2.62e-71 222
MS.gene053227.t1 MTR_2g017570 51.261 238 107 3 71 305 34 265 2.95e-71 221
MS.gene053227.t1 MTR_2g017620 48.594 249 121 2 54 298 17 262 3.34e-71 221
MS.gene053227.t1 MTR_2g017620 48.594 249 121 2 54 298 3 248 3.96e-71 221
MS.gene053227.t1 MTR_4g084880 46.269 268 128 5 50 305 5 268 1.60e-70 219
MS.gene053227.t1 MTR_5g079570 46.025 239 120 3 64 294 29 266 5.65e-61 195
MS.gene053227.t1 MTR_2g017620 53.261 184 79 2 119 298 1 181 2.27e-59 188
MS.gene053227.t1 MTR_3g008920 49.351 231 112 4 56 284 8 235 7.44e-59 189
MS.gene053227.t1 MTR_5g063930 45.116 215 112 2 75 285 37 249 1.68e-58 188
MS.gene053227.t1 MTR_8g087720 55.422 166 69 2 75 237 38 201 1.48e-51 169
MS.gene053227.t1 MTR_1g070385 40.909 220 130 0 73 292 60 279 6.59e-46 166
MS.gene053227.t1 MTR_7g010650 45.223 157 86 0 61 217 23 179 3.52e-40 139
MS.gene053227.t1 MTR_8g087720 53.425 146 63 2 75 217 38 181 8.96e-40 138
MS.gene053227.t1 MTR_2g101370 36.889 225 122 6 79 289 24 242 4.73e-32 119
MS.gene053227.t1 MTR_1g006490 37.073 205 109 7 80 272 24 220 1.74e-29 112
MS.gene053227.t1 MTR_8g013680 36.232 207 114 5 79 272 23 224 3.40e-28 109
MS.gene053227.t1 MTR_1g006590 35.610 205 112 7 80 272 24 220 7.43e-26 103
MS.gene053227.t1 MTR_1g077540 34.404 218 135 3 79 288 25 242 5.45e-25 101
MS.gene053227.t1 MTR_5g012810 35.122 205 118 4 79 272 23 223 1.33e-23 97.4
MS.gene053227.t1 MTR_6g069040 32.110 218 140 3 79 288 25 242 2.47e-23 96.7
MS.gene053227.t1 MTR_2g094270 29.520 271 149 7 68 304 22 284 5.86e-21 90.9
MS.gene053227.t1 MTR_3g118010 29.545 264 151 9 68 304 19 274 7.81e-21 90.5
MS.gene053227.t1 MTR_1g115405 29.817 218 145 3 79 288 25 242 1.82e-20 89.0
MS.gene053227.t1 MTR_4g063090 31.188 202 131 3 80 273 26 227 1.82e-19 86.3
MS.gene053227.t1 MTR_7g103030 33.981 206 119 5 79 272 25 225 4.76e-19 85.1
MS.gene053227.t1 MTR_7g101190 27.407 270 155 8 68 304 21 282 2.49e-18 83.6
MS.gene053227.t1 MTR_3g070210 28.279 244 147 8 68 283 37 280 1.49e-17 81.6
MS.gene053227.t1 MTR_2g094270 29.911 224 126 5 68 260 22 245 2.27e-17 80.5
MS.gene053227.t1 MTR_8g098375 28.205 234 140 8 68 273 34 267 1.55e-16 78.6
MS.gene053227.t1 MTR_2g060360 28.870 239 149 6 79 304 23 253 3.15e-16 77.0
MS.gene053227.t1 MTR_4g415300 28.302 212 134 6 79 273 60 270 4.97e-16 77.0
MS.gene053227.t1 MTR_5g010150 28.302 212 135 6 79 273 56 267 7.91e-16 76.6
MS.gene053227.t1 MTR_7g023350 27.523 218 150 3 79 288 25 242 1.23e-15 75.5
MS.gene053227.t1 MTR_5g082070 26.923 234 143 7 68 273 37 270 2.43e-15 75.1
MS.gene053227.t1 MTR_4g059390 26.838 272 154 8 68 304 21 282 2.69e-15 75.1
MS.gene053227.t1 MTR_3g070210 28.767 219 131 7 68 261 37 255 8.45e-15 73.6
MS.gene053227.t1 MTR_0793s0010 100.000 26 0 0 280 305 30 55 4.13e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053227.t1 AT1G80760 76.129 310 64 5 1 305 1 305 4.08e-161 451
MS.gene053227.t1 AT4G10380 69.200 250 67 3 43 288 48 291 4.54e-116 337
MS.gene053227.t1 AT4G19030 46.643 283 140 4 33 304 10 292 5.28e-76 234
MS.gene053227.t1 AT5G37820 47.967 246 124 3 55 298 24 267 6.88e-72 223
MS.gene053227.t1 AT5G37820 44.565 276 144 5 27 298 33 303 1.06e-71 224
MS.gene053227.t1 AT4G18910 44.178 292 143 5 29 304 2 289 1.68e-71 223
MS.gene053227.t1 AT5G37810 47.347 245 125 3 56 298 25 267 2.42e-69 217
MS.gene053227.t1 AT1G31885 45.161 248 128 2 65 304 33 280 1.12e-65 209
MS.gene053227.t1 AT1G31885 46.018 226 114 2 87 304 1 226 2.59e-60 193
MS.gene053227.t1 AT2G34390 40.942 276 144 6 43 305 13 282 2.47e-55 181
MS.gene053227.t1 AT4G19030 46.977 215 103 4 33 236 10 224 8.01e-53 172
MS.gene053227.t1 AT2G34390 43.882 237 117 5 79 305 10 240 1.46e-52 173
MS.gene053227.t1 AT4G18910 44.889 225 104 5 29 237 2 222 8.22e-49 162
MS.gene053227.t1 AT4G19030 44.898 196 97 4 33 217 10 205 6.90e-42 144
MS.gene053227.t1 AT3G06100 37.736 212 131 1 75 285 46 257 7.08e-42 146
MS.gene053227.t1 AT3G06100 37.850 214 126 3 79 288 2 212 2.78e-41 143
MS.gene053227.t1 AT2G34390 39.423 208 110 4 43 237 13 217 2.46e-35 127
MS.gene053227.t1 AT3G16240 37.198 207 112 5 79 272 23 224 1.34e-30 115
MS.gene053227.t1 AT2G34390 37.895 190 102 4 43 219 13 199 3.16e-28 108
MS.gene053227.t1 AT2G25810 34.928 209 118 6 75 272 19 220 2.09e-27 107
MS.gene053227.t1 AT2G29870 47.826 115 57 1 191 305 22 133 5.65e-26 100
MS.gene053227.t1 AT5G47450 34.361 227 123 7 79 284 23 244 2.64e-25 102
MS.gene053227.t1 AT4G17340 33.816 207 119 5 79 272 23 224 4.92e-24 98.6
MS.gene053227.t1 AT3G26520 32.314 229 136 5 79 294 26 248 1.09e-21 92.4
MS.gene053227.t1 AT2G36830 33.816 207 119 5 79 272 25 226 7.83e-21 89.7
MS.gene053227.t1 AT4G35100 29.242 277 161 9 55 304 7 275 9.25e-20 87.4
MS.gene053227.t1 AT4G35100 29.242 277 161 9 55 304 7 275 9.25e-20 87.4
MS.gene053227.t1 AT3G06100 33.813 139 91 1 151 288 41 179 1.12e-19 85.5
MS.gene053227.t1 AT2G16850 28.731 268 148 9 68 304 18 273 2.51e-18 83.6
MS.gene053227.t1 AT1G17810 30.357 224 139 6 79 287 28 249 9.80e-18 81.6
MS.gene053227.t1 AT1G73190 29.596 223 144 3 79 288 28 250 1.20e-17 81.3
MS.gene053227.t1 AT4G01470 28.755 233 140 6 79 290 25 252 1.50e-17 80.9
MS.gene053227.t1 AT5G60660 28.444 225 137 6 72 273 36 259 1.64e-17 81.3
MS.gene053227.t1 AT3G53420 26.568 271 156 8 68 304 21 282 8.90e-17 79.3
MS.gene053227.t1 AT3G53420 26.568 271 156 8 68 304 21 282 8.90e-17 79.3
MS.gene053227.t1 AT4G00430 29.060 234 137 8 68 273 35 267 9.92e-17 79.3
MS.gene053227.t1 AT2G37170 26.568 271 156 8 68 304 19 280 1.06e-16 79.0
MS.gene053227.t1 AT4G23400 29.717 212 131 6 79 273 57 267 1.29e-16 79.0
MS.gene053227.t1 AT1G31885 43.678 87 49 0 65 151 33 119 1.39e-16 75.5
MS.gene053227.t1 AT3G54820 29.259 270 150 8 68 304 20 281 1.93e-16 78.2
MS.gene053227.t1 AT2G37170 26.568 271 156 8 68 304 62 323 2.11e-16 79.0
MS.gene053227.t1 AT2G45960 29.487 234 136 8 68 273 34 266 2.39e-16 78.2
MS.gene053227.t1 AT1G01620 29.717 212 131 6 79 273 56 266 2.39e-16 78.2
MS.gene053227.t1 AT3G61430 30.516 213 128 7 79 273 56 266 1.44e-15 75.9
MS.gene053227.t1 AT3G61430 30.516 213 128 7 79 273 56 266 1.44e-15 75.9
MS.gene053227.t1 AT2G37180 26.199 271 157 8 68 304 19 280 2.23e-15 75.5
MS.gene053227.t1 AT2G39010 27.574 272 156 8 66 304 18 281 7.33e-14 70.9
MS.gene053227.t1 AT2G45960 30.093 216 125 7 68 258 34 248 7.46e-14 70.9
MS.gene053227.t1 AT3G47440 27.477 222 146 5 79 289 27 244 8.41e-14 70.5
MS.gene053227.t1 AT2G45960 30.093 216 125 7 68 258 34 248 8.93e-14 70.9
MS.gene053227.t1 AT1G01620 30.726 179 109 5 109 273 17 194 1.76e-13 68.9

Find 74 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCAACTGGTCACATTTC+TGG 0.140657 4.2:+92830877 MS.gene053227:CDS
TCCTGTCCCTCTTGCCAAAA+AGG 0.248434 4.2:+92829069 MS.gene053227:CDS
GCTGGTCCTAGTGTTCTTAC+TGG 0.259920 4.2:-92833563 None:intergenic
TTTCTGAGTTATGTATCTTT+TGG 0.287885 4.2:-92830804 None:intergenic
CATAACTCAGAAACACTAAT+TGG 0.296495 4.2:+92830814 MS.gene053227:CDS
GCCCCTATTCTTGGTGCTCT+TGG 0.301422 4.2:+92833629 MS.gene053227:CDS
TTCATTGAAGCTCCAGTTGC+AGG 0.320017 4.2:-92833539 None:intergenic
GTATATTGCTGCACAAGTTT+TGG 0.323183 4.2:+92831068 MS.gene053227:CDS
CATCATCTTCTGAAACTTCC+AGG 0.332213 4.2:-92833725 None:intergenic
CAGGTTGGAGCTGAGTTTAT+AGG 0.341644 4.2:+92830736 MS.gene053227:intron
CCAGGAGTACCTGGGGTAGC+AGG 0.347255 4.2:-92828899 None:intergenic
CTTGGTGCTCTTGGTGGGGC+AGG 0.355406 4.2:+92833638 MS.gene053227:CDS
TATCTCATAGCCCCTATTCT+TGG 0.361100 4.2:+92833620 MS.gene053227:CDS
ACGGTTCCTTCAGTTGAATA+TGG 0.365783 4.2:+92831153 MS.gene053227:CDS
CACCAAGAGCACCAAGAATA+GGG 0.367072 4.2:-92833631 None:intergenic
CCTGGGGTAGCAGGGGTAGA+AGG 0.377162 4.2:-92828890 None:intergenic
ATATACTGCAGGCCTGCAAC+TGG 0.394672 4.2:+92833527 MS.gene053227:intron
TAGTTGTTTGCAGCAATTGC+TGG 0.400189 4.2:-92833581 None:intergenic
ATGCTCAACATACTCATTGC+TGG 0.401599 4.2:+92832934 MS.gene053227:CDS
TTGGCAAGAGGGACAGGAGG+GGG 0.402167 4.2:-92829064 None:intergenic
CCTATTCTTGGTGCTCTTGG+TGG 0.402986 4.2:+92833632 MS.gene053227:CDS
CCACCAAGAGCACCAAGAAT+AGG 0.407883 4.2:-92833632 None:intergenic
ATTGGATGTGCTGGAGCTAC+TGG 0.408901 4.2:+92830832 MS.gene053227:CDS
CTATTCTTGGTGCTCTTGGT+GGG 0.417084 4.2:+92833633 MS.gene053227:CDS
AGAGGAGCACCAGGAGTACC+TGG 0.426312 4.2:-92828908 None:intergenic
GGCAAAGAGCAAGTGACTTT+AGG 0.427110 4.2:-92829040 None:intergenic
TTCTGGTGCTCATCTTAATC+CGG 0.430743 4.2:+92830894 MS.gene053227:CDS
ACATACATTCTAATGTTTGC+TGG 0.431868 4.2:+92830760 MS.gene053227:CDS
GGCTTCAAATCTGAGAGAAC+TGG 0.434296 4.2:+92828938 MS.gene053227:CDS
ATGCAGGTGGGAGAACTTGC+GGG 0.438650 4.2:+92832889 MS.gene053227:intron
CCTGCTACCCCAGGTACTCC+TGG 0.460634 4.2:+92828899 MS.gene053227:CDS
AAATCTGAGAGAACTGGAAA+TGG 0.466281 4.2:+92828944 MS.gene053227:CDS
CTGCATTAAAACACTTCCCA+TGG 0.472333 4.2:+92830935 MS.gene053227:CDS
TCAGAGTTAAACTCTTCATC+AGG 0.475612 4.2:-92833683 None:intergenic
GAAACACTAATTGGATGTGC+TGG 0.482781 4.2:+92830823 MS.gene053227:CDS
CAAACAACTACAAAGGCATA+TGG 0.493499 4.2:+92833594 MS.gene053227:CDS
GTGACACCGCCACTCATGAA+TGG 0.505279 4.2:-92831132 None:intergenic
TATTCTTGGTGCTCTTGGTG+GGG 0.515515 4.2:+92833634 MS.gene053227:CDS
GAAGACTGGACTTTGGAAGA+TGG 0.520509 4.2:+92829010 MS.gene053227:CDS
CAGGAGTACCTGGGGTAGCA+GGG 0.521311 4.2:-92828898 None:intergenic
ATCATCTTCTGAAACTTCCA+GGG 0.521569 4.2:-92833724 None:intergenic
GAAACTTCCAGGGGCAGAAG+AGG 0.526255 4.2:-92833714 None:intergenic
GTTAAAGCCTCTTCTGCCCC+TGG 0.527500 4.2:+92833707 MS.gene053227:CDS
TGCTCAACATACTCATTGCT+GGG 0.532589 4.2:+92832935 MS.gene053227:CDS
TAAACTCTAAAGCAAAAGCT+TGG 0.536190 4.2:-92831176 None:intergenic
TAGTGTTGAAGACTGGACTT+TGG 0.539097 4.2:+92829003 MS.gene053227:CDS
GAACTTGCGGGAATCGCGGT+GGG 0.555721 4.2:+92832901 MS.gene053227:CDS
CCTTCTACCCCTGCTACCCC+AGG 0.557794 4.2:+92828890 MS.gene053227:CDS
ATTCATGAGTGGCGGTGTCA+CGG 0.561634 4.2:+92831134 MS.gene053227:CDS
GCAGGGGTAGAAGGTACTGA+TGG 0.572195 4.2:-92828881 None:intergenic
GCAAATGAAATCGTAACGGC+CGG 0.573791 4.2:-92830913 None:intergenic
GCTTGGCCATATTCAACTGA+AGG 0.575237 4.2:-92831159 None:intergenic
GGGAGAACTTGCGGGAATCG+CGG 0.575910 4.2:+92832897 MS.gene053227:CDS
TGATTAGAGTATGGACAATG+AGG 0.583019 4.2:+92828853 None:intergenic
AGAGCAAGTGACTTTAGGTA+AGG 0.585846 4.2:-92829035 None:intergenic
AGAACTTGCGGGAATCGCGG+TGG 0.586192 4.2:+92832900 MS.gene053227:CDS
ATGAATCCAGTAAGAACACT+AGG 0.586393 4.2:+92833557 MS.gene053227:CDS
AATGCAGGTGGGAGAACTTG+CGG 0.593498 4.2:+92832888 MS.gene053227:intron
ACCAAGAGCACCAAGAATAG+GGG 0.596229 4.2:-92833630 None:intergenic
AGGAGTACCTGGGGTAGCAG+GGG 0.604848 4.2:-92828897 None:intergenic
TTTGGCAAGAGGGACAGGAG+GGG 0.604963 4.2:-92829065 None:intergenic
GAGGAGCACCAGGAGTACCT+GGG 0.605523 4.2:-92828907 None:intergenic
AGGAGCACCAGGAGTACCTG+GGG 0.605545 4.2:-92828906 None:intergenic
TGATGAAGAGTTTAACTCTG+AGG 0.607367 4.2:+92833685 MS.gene053227:CDS
CATGTTTGTTGTCACTGCAG+TGG 0.612813 4.2:+92831215 MS.gene053227:CDS
TTTCATCCATTCATGAGTGG+CGG 0.617113 4.2:+92831126 MS.gene053227:CDS
ACTCACAGCTCTTGTGTCGG+TGG 0.621849 4.2:-92831238 None:intergenic
CAGGGGTAGAAGGTACTGAT+GGG 0.623548 4.2:-92828880 None:intergenic
TGCAGCAAATGAAATCGTAA+CGG 0.652099 4.2:-92830917 None:intergenic
TCATCTTCTGAAACTTCCAG+GGG 0.658967 4.2:-92833723 None:intergenic
ATTGCTGCAAACAACTACAA+AGG 0.670460 4.2:+92833587 MS.gene053227:CDS
TATACTCACAGCTCTTGTGT+CGG 0.676515 4.2:-92831241 None:intergenic
ACTTGTGCAGCAATATACAA+AGG 0.678381 4.2:-92831063 None:intergenic
GAGTATGTTGAGCATGACAG+TGG 0.737398 4.2:-92832926 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAATATTAA+AGG + chr4.2:92831711-92831730 MS.gene053227:intron 0.0%
!! TAATAAAAATATATATTTAA+TGG - chr4.2:92833073-92833092 None:intergenic 0.0%
!! AAATAAAACTAAACTAAATA+AGG + chr4.2:92830489-92830508 MS.gene053227:intron 10.0%
!!! ATTGTCTTTTATTTTATTTT+AGG - chr4.2:92830414-92830433 None:intergenic 10.0%
!!! TAATTTTGTGAATTAATTTT+AGG + chr4.2:92831038-92831057 MS.gene053227:intron 10.0%
!! AAAGTTCTTATAAAAGAATA+TGG - chr4.2:92831284-92831303 None:intergenic 15.0%
!! ACACAATATAATTAAATAAG+TGG - chr4.2:92832667-92832686 None:intergenic 15.0%
!! ATAAAAGAGCAATAATATAA+AGG + chr4.2:92830073-92830092 MS.gene053227:intron 15.0%
!! ATAATTAGAAACAAATAAAG+AGG + chr4.2:92831482-92831501 MS.gene053227:intron 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + chr4.2:92832417-92832436 MS.gene053227:intron 15.0%
!! TAATTAGAAACAAATAAAGA+GGG + chr4.2:92831483-92831502 MS.gene053227:intron 15.0%
!! TGTCAAAAAAAACAATAATA+TGG - chr4.2:92832813-92832832 None:intergenic 15.0%
!! TTAAATGTTATAGAGAATTA+CGG + chr4.2:92829181-92829200 MS.gene053227:intron 15.0%
!! TTTAGTACATGTTAAAATTA+GGG - chr4.2:92830561-92830580 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + chr4.2:92832407-92832426 MS.gene053227:intron 15.0%
!!! AATTAAAATATGTACCTTTT+TGG - chr4.2:92829086-92829105 None:intergenic 15.0%
!!! ACTTAAACATCTAATTTTAT+GGG + chr4.2:92829573-92829592 MS.gene053227:intron 15.0%
!!! ATACTTTGTTTAAGAAAATA+AGG + chr4.2:92831418-92831437 MS.gene053227:intron 15.0%
!!! ATTATTGTTTTTTTTGACAA+AGG + chr4.2:92832814-92832833 MS.gene053227:intron 15.0%
!!! TAAAACATTTTAAATTCTTG+AGG - chr4.2:92828985-92829004 None:intergenic 15.0%
!!! TTATTTTAGGAATGAATATA+TGG - chr4.2:92830401-92830420 None:intergenic 15.0%
!!! TTTTAGTACATGTTAAAATT+AGG - chr4.2:92830562-92830581 None:intergenic 15.0%
!! AAGATATCAAAAGTAATGAT+TGG - chr4.2:92831565-92831584 None:intergenic 20.0%
!! AATAATAATAAAAGAGCCTT+GGG + chr4.2:92829509-92829528 MS.gene053227:intron 20.0%
!! ACATGGTAAAAAAGTTAATA+GGG + chr4.2:92830649-92830668 MS.gene053227:intron 20.0%
!! ATGTGTTAAATAATGTAGTT+GGG + chr4.2:92830692-92830711 MS.gene053227:intron 20.0%
!! CACATCAATATATCAAAAAT+AGG - chr4.2:92830677-92830696 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG - chr4.2:92832367-92832386 None:intergenic 20.0%
!! TACAAAAGTGACAATTATAA+AGG - chr4.2:92832280-92832299 None:intergenic 20.0%
!! TACATGGTAAAAAAGTTAAT+AGG + chr4.2:92830648-92830667 MS.gene053227:intron 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr4.2:92832503-92832522 MS.gene053227:intron 20.0%
!! TGAATCTAGATTAGAAATTA+GGG + chr4.2:92829917-92829936 MS.gene053227:intron 20.0%
!! TGAATTAGAAGATGAATTTA+GGG - chr4.2:92830984-92831003 None:intergenic 20.0%
!! TTGAATTAGAAGATGAATTT+AGG - chr4.2:92830985-92831004 None:intergenic 20.0%
!!! AGTTTTGATAAATTACAGTT+TGG + chr4.2:92832751-92832770 MS.gene053227:intron 20.0%
!!! ATGATCATAATTTTATCAAC+TGG + chr4.2:92830865-92830884 MS.gene053227:CDS 20.0%
!!! CTCTTTTATTATTATTGTTG+GGG - chr4.2:92829505-92829524 None:intergenic 20.0%
!!! GACTTAAACATCTAATTTTA+TGG + chr4.2:92829572-92829591 MS.gene053227:intron 20.0%
!!! GCTCTTTTATTATTATTGTT+GGG - chr4.2:92829506-92829525 None:intergenic 20.0%
!!! GTGTAACATTTTTTAAAATC+CGG + chr4.2:92829286-92829305 MS.gene053227:intron 20.0%
!!! GTTTATATCATTTGTTTTGT+CGG - chr4.2:92833257-92833276 None:intergenic 20.0%
!!! TAAAGGTACAATTGTATATA+TGG + chr4.2:92831728-92831747 MS.gene053227:intron 20.0%
!!! TACTAACATGATTTTTGTAA+AGG + chr4.2:92829256-92829275 MS.gene053227:intron 20.0%
!!! TAGTCTTGCATATATATTTT+TGG + chr4.2:92831303-92831322 MS.gene053227:intron 20.0%
!!! TCTTTTATTATTATTGTTGG+GGG - chr4.2:92829504-92829523 None:intergenic 20.0%
!!! TCTTTTTGGATTCAATTTTA+AGG - chr4.2:92831963-92831982 None:intergenic 20.0%
!!! TTTATATCATTTGTTTTGTC+GGG - chr4.2:92833256-92833275 None:intergenic 20.0%
!!! TTTTATATATCCATTTAGTG+AGG - chr4.2:92832062-92832081 None:intergenic 20.0%
! AAAGATCCAATATTCCATTT+AGG + chr4.2:92833292-92833311 MS.gene053227:intron 25.0%
! AAATACATACACGTAAAAAC+AGG - chr4.2:92833433-92833452 None:intergenic 25.0%
! AAGTGACAATTATAAAGGAA+CGG - chr4.2:92832275-92832294 None:intergenic 25.0%
! AATACTAACATATGTCCTTA+TGG + chr4.2:92831793-92831812 MS.gene053227:intron 25.0%
! AGAAGAAAGCTTATAAAAAG+GGG + chr4.2:92829435-92829454 MS.gene053227:intron 25.0%
! AGAGAAGAAAGCTTATAAAA+AGG + chr4.2:92829433-92829452 MS.gene053227:intron 25.0%
! ATGTTCATTGATACAATTAG+TGG - chr4.2:92832099-92832118 None:intergenic 25.0%
! ATTAGGGTTACATAGAAATT+AGG + chr4.2:92829933-92829952 MS.gene053227:intron 25.0%
! ATTGTTAATCCATGTTAAGA+CGG + chr4.2:92829894-92829913 MS.gene053227:intron 25.0%
! CAATAATAATAAAAGAGCCT+TGG + chr4.2:92829508-92829527 MS.gene053227:intron 25.0%
! CATGGTAAAAAAGTTAATAG+GGG + chr4.2:92830650-92830669 MS.gene053227:intron 25.0%
! CGAATGTGATTAAAATAATG+AGG - chr4.2:92832979-92832998 None:intergenic 25.0%
! CTAGACACTAAAATATTTAG+TGG + chr4.2:92833212-92833231 MS.gene053227:intron 25.0%
! CTCTCTGCAATAAATATATA+GGG - chr4.2:92832377-92832396 None:intergenic 25.0%
! GAAATTCAGACATGTAAAAA+AGG + chr4.2:92833399-92833418 MS.gene053227:intron 25.0%
! GAACAAAAGATGAATGTTTA+TGG + chr4.2:92830112-92830131 MS.gene053227:intron 25.0%
! GAGAAGAAAGCTTATAAAAA+GGG + chr4.2:92829434-92829453 MS.gene053227:intron 25.0%
! GATGTGTTAAATAATGTAGT+TGG + chr4.2:92830691-92830710 MS.gene053227:intron 25.0%
! GATTAACAATTATCAAACTG+TGG - chr4.2:92829884-92829903 None:intergenic 25.0%
! GATTAATGTAATCATTTACC+AGG + chr4.2:92830717-92830736 MS.gene053227:intron 25.0%
! GTGAATCTAGATTAGAAATT+AGG + chr4.2:92829916-92829935 MS.gene053227:intron 25.0%
! TAAAATCTAAGCAACTACAA+GGG + chr4.2:92830171-92830190 MS.gene053227:intron 25.0%
! TCTATACTGATAATAGTTGA+AGG + chr4.2:92832156-92832175 MS.gene053227:intron 25.0%
! TCTCTCTGCAATAAATATAT+AGG - chr4.2:92832378-92832397 None:intergenic 25.0%
! TCTCTGCAATAAATATATAG+GGG - chr4.2:92832376-92832395 None:intergenic 25.0%
! TGTTAAAATTAGGGTGTATT+TGG - chr4.2:92830552-92830571 None:intergenic 25.0%
! TTAAAATCTAAGCAACTACA+AGG + chr4.2:92830170-92830189 MS.gene053227:intron 25.0%
! TTACATAGAAATTAGGGTTT+AGG + chr4.2:92829940-92829959 MS.gene053227:intron 25.0%
! TTAGGGTTACATAGAAATTA+GGG + chr4.2:92829934-92829953 MS.gene053227:intron 25.0%
! TTTAACTCTTAAAGCAAATG+AGG - chr4.2:92833189-92833208 None:intergenic 25.0%
! TTTGTGAAATCAATTTCTGA+TGG - chr4.2:92831694-92831713 None:intergenic 25.0%
!! AAACATTCATCTTTTGTTCT+TGG - chr4.2:92830111-92830130 None:intergenic 25.0%
!! GGCTCTTTTATTATTATTGT+TGG - chr4.2:92829507-92829526 None:intergenic 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + chr4.2:92832336-92832355 MS.gene053227:intron 25.0%
!! TTTCTGAGTTATGTATCTTT+TGG - chr4.2:92830807-92830826 None:intergenic 25.0%
!!! AGTAAAAGTATTTGTTGTCT+TGG + chr4.2:92832467-92832486 MS.gene053227:intron 25.0%
!!! TTGTTGTTACATTTTTCCAT+GGG - chr4.2:92830954-92830973 None:intergenic 25.0%
!!! TTTGTTGTTACATTTTTCCA+TGG - chr4.2:92830955-92830974 None:intergenic 25.0%
!!! TTTTAGGAATGAATATATGG+TGG - chr4.2:92830398-92830417 None:intergenic 25.0%
AAATAATGAGGAGTGAAAGT+TGG - chr4.2:92832967-92832986 None:intergenic 30.0%
AAATATCTCACTGCAAAACA+TGG - chr4.2:92832133-92832152 None:intergenic 30.0%
AAGAAAGCTTATAAAAAGGG+GGG + chr4.2:92829437-92829456 MS.gene053227:intron 30.0%
AATGTAATCATTTACCAGGT+TGG + chr4.2:92830721-92830740 MS.gene053227:intron 30.0%
ACATACATTCTAATGTTTGC+TGG + chr4.2:92830760-92830779 MS.gene053227:CDS 30.0%
ACCATGTATGAAACTATACA+AGG - chr4.2:92830636-92830655 None:intergenic 30.0%
ACCTTGTATAGTTTCATACA+TGG + chr4.2:92830632-92830651 MS.gene053227:intron 30.0%
AGATACGTTGCAAATTCTTA+AGG + chr4.2:92833141-92833160 MS.gene053227:intron 30.0%
AGGAAATGCAAATAAACAAG+AGG + chr4.2:92831438-92831457 MS.gene053227:intron 30.0%
CAAAAGATGAATGTTTATGG+TGG + chr4.2:92830115-92830134 MS.gene053227:intron 30.0%
CATAACTCAGAAACACTAAT+TGG + chr4.2:92830814-92830833 MS.gene053227:CDS 30.0%
CGCTTTATGAATTGATGTTT+GGG + chr4.2:92829819-92829838 MS.gene053227:intron 30.0%
CTTACTACTATTACTTCGAT+AGG - chr4.2:92829354-92829373 None:intergenic 30.0%
GAAGAAAGCTTATAAAAAGG+GGG + chr4.2:92829436-92829455 MS.gene053227:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + chr4.2:92832512-92832531 MS.gene053227:intron 30.0%
GTACACTAACAAATACCATA+AGG - chr4.2:92831811-92831830 None:intergenic 30.0%
GTTGATATATATGAGACAGA+GGG - chr4.2:92832579-92832598 None:intergenic 30.0%
TCGCTTTATGAATTGATGTT+TGG + chr4.2:92829818-92829837 MS.gene053227:intron 30.0%
TGACAATTAAAAAGGAACAG+AGG + chr4.2:92832511-92832530 MS.gene053227:intron 30.0%
TGTTGATATATATGAGACAG+AGG - chr4.2:92832580-92832599 None:intergenic 30.0%
TTCTTCGTCTTAGGATTATT+GGG - chr4.2:92829998-92830017 None:intergenic 30.0%
TTTGACACTAAATATACTGC+AGG + chr4.2:92833516-92833535 MS.gene053227:intron 30.0%
! ACACACTAATTTCTAAAGAC+CGG + chr4.2:92829598-92829617 MS.gene053227:intron 30.0%
! TTTAAGTCTTGTCTAGTGAA+GGG - chr4.2:92829560-92829579 None:intergenic 30.0%
! TTTTCTTATCTCACACTTCT+CGG + chr4.2:92833353-92833372 MS.gene053227:intron 30.0%
!! TAAACTCTAAAGCAAAAGCT+TGG - chr4.2:92831179-92831198 None:intergenic 30.0%
!!! AATGTTTTAGTGTTGAAGAC+TGG + chr4.2:92828996-92829015 MS.gene053227:CDS 30.0%
AAATCTGAGAGAACTGGAAA+TGG + chr4.2:92828944-92828963 MS.gene053227:CDS 35.0%
ACAAGGCCTAAATGGAATAT+TGG - chr4.2:92833301-92833320 None:intergenic 35.0%
ACTAACGTTCATTGTAGACA+TGG + chr4.2:92830026-92830045 MS.gene053227:intron 35.0%
ACTTGTGCAGCAATATACAA+AGG - chr4.2:92831066-92831085 None:intergenic 35.0%
AGTAATCATGTCAGCGAAAT+AGG - chr4.2:92829686-92829705 None:intergenic 35.0%
ATCAAATCACAGTATGTCAC+CGG - chr4.2:92829308-92829327 None:intergenic 35.0%
ATCAATTCATAAAGCGAGAG+CGG - chr4.2:92829815-92829834 None:intergenic 35.0%
ATCTTATGATTCAAGCCACT+AGG + chr4.2:92831580-92831599 MS.gene053227:intron 35.0%
ATGAATCCAGTAAGAACACT+AGG + chr4.2:92833557-92833576 MS.gene053227:CDS 35.0%
ATGACAAACCAATAATCCCA+AGG - chr4.2:92829528-92829547 None:intergenic 35.0%
ATTGCTGCAAACAACTACAA+AGG + chr4.2:92833587-92833606 MS.gene053227:CDS 35.0%
CTAACGTTCATTGTAGACAT+GGG + chr4.2:92830027-92830046 MS.gene053227:intron 35.0%
CTACATGTTCATGTTCAGTA+AGG - chr4.2:92832545-92832564 None:intergenic 35.0%
CTTCTTCGTCTTAGGATTAT+TGG - chr4.2:92829999-92830018 None:intergenic 35.0%
GATTACTAGAAGATGCATAG+AGG + chr4.2:92829699-92829718 MS.gene053227:intron 35.0%
GCAAACAATAAGATCCTGTT+AGG - chr4.2:92833326-92833345 None:intergenic 35.0%
TAAAAGAGCCTTGGGATTAT+TGG + chr4.2:92829517-92829536 MS.gene053227:intron 35.0%
TAACGTTCATTGTAGACATG+GGG + chr4.2:92830028-92830047 MS.gene053227:intron 35.0%
TAAGATCCTGTTAGGAAACA+AGG - chr4.2:92833318-92833337 None:intergenic 35.0%
TCAATTGAGTTATGTTCACG+AGG - chr4.2:92833120-92833139 None:intergenic 35.0%
TCAGAGTTAAACTCTTCATC+AGG - chr4.2:92833686-92833705 None:intergenic 35.0%
TCTTCGTCTTAGGATTATTG+GGG - chr4.2:92829997-92830016 None:intergenic 35.0%
TGACAATTATAAAGGAACGG+AGG - chr4.2:92832272-92832291 None:intergenic 35.0%
TGATGAAGAGTTTAACTCTG+AGG + chr4.2:92833685-92833704 MS.gene053227:CDS 35.0%
TGCAGCAAATGAAATCGTAA+CGG - chr4.2:92830920-92830939 None:intergenic 35.0%
TGTACTAAAACTTGATGTCG+CGG + chr4.2:92830572-92830591 MS.gene053227:intron 35.0%
TTATCAACTGGTCACATTTC+TGG + chr4.2:92830877-92830896 MS.gene053227:CDS 35.0%
! AAGACATGCTTTTGTCCAAA+AGG + chr4.2:92831993-92832012 MS.gene053227:intron 35.0%
! AGGAATGAATATATGGTGGA+AGG - chr4.2:92830394-92830413 None:intergenic 35.0%
! CAAACAACTACAAAGGCATA+TGG + chr4.2:92833594-92833613 MS.gene053227:CDS 35.0%
! GTATATTGCTGCACAAGTTT+TGG + chr4.2:92831068-92831087 MS.gene053227:CDS 35.0%
! GTTTAAGTCTTGTCTAGTGA+AGG - chr4.2:92829561-92829580 None:intergenic 35.0%
! GTTTTTCATCCATTCATGAG+TGG + chr4.2:92831123-92831142 MS.gene053227:CDS 35.0%
! TGAATTGATGTTTGGGATGA+TGG + chr4.2:92829826-92829845 MS.gene053227:intron 35.0%
! TGATAATAGTTGAAGGCATG+TGG + chr4.2:92832163-92832182 MS.gene053227:intron 35.0%
! TGTGCTTCTTTTACTCTCAA+AGG + chr4.2:92831099-92831118 MS.gene053227:CDS 35.0%
!! AAGTAATGATTGGTGCTGAA+AGG - chr4.2:92831555-92831574 None:intergenic 35.0%
!! AGTAATGATTGGTGCTGAAA+GGG - chr4.2:92831554-92831573 None:intergenic 35.0%
!! ATATGTACCTTTTTGGCAAG+AGG - chr4.2:92829079-92829098 None:intergenic 35.0%
!! TATGTACCTTTTTGGCAAGA+GGG - chr4.2:92829078-92829097 None:intergenic 35.0%
!!! GGTTTAGGCTTGTTTTGTTT+AGG + chr4.2:92829955-92829974 MS.gene053227:intron 35.0%
AACGTTCATTGTAGACATGG+GGG + chr4.2:92830029-92830048 MS.gene053227:intron 40.0%
AAGGCTAAGATGAGAGTCAA+TGG + chr4.2:92832012-92832031 MS.gene053227:intron 40.0%
ACGGTTCCTTCAGTTGAATA+TGG + chr4.2:92831153-92831172 MS.gene053227:CDS 40.0%
AGAGCAAGTGACTTTAGGTA+AGG - chr4.2:92829038-92829057 None:intergenic 40.0%
ATGCTCAACATACTCATTGC+TGG + chr4.2:92832934-92832953 MS.gene053227:CDS 40.0%
CTAGATTCACCGTCTTAACA+TGG - chr4.2:92829906-92829925 None:intergenic 40.0%
CTGCATTAAAACACTTCCCA+TGG + chr4.2:92830935-92830954 MS.gene053227:CDS 40.0%
GAAACACTAATTGGATGTGC+TGG + chr4.2:92830823-92830842 MS.gene053227:CDS 40.0%
GTTAGGAAACAAGGCCTAAA+TGG - chr4.2:92833309-92833328 None:intergenic 40.0%
TAACATGATGCAATGCAGGT+GGG + chr4.2:92832877-92832896 MS.gene053227:intron 40.0%
TAGAACCAATCATGTGCTTG+AGG + chr4.2:92831374-92831393 MS.gene053227:intron 40.0%
TAGTTGTTTGCAGCAATTGC+TGG - chr4.2:92833584-92833603 None:intergenic 40.0%
TATACTCACAGCTCTTGTGT+CGG - chr4.2:92831244-92831263 None:intergenic 40.0%
TATCTCATAGCCCCTATTCT+TGG + chr4.2:92833620-92833639 MS.gene053227:CDS 40.0%
TCGAAGAAAAGCAGCAAAAG+AGG + chr4.2:92830228-92830247 MS.gene053227:intron 40.0%
TGAGTAGACTTCTTCGTCTT+AGG - chr4.2:92830007-92830026 None:intergenic 40.0%
TGCTAGAAGTAAACTCTCAC+CGG - chr4.2:92829657-92829676 None:intergenic 40.0%
TGCTCAACATACTCATTGCT+GGG + chr4.2:92832935-92832954 MS.gene053227:CDS 40.0%
TTCTGGTGCTCATCTTAATC+CGG + chr4.2:92830894-92830913 MS.gene053227:CDS 40.0%
TTTCATCCATTCATGAGTGG+CGG + chr4.2:92831126-92831145 MS.gene053227:CDS 40.0%
! AATAGTTGAAGGCATGTGGT+GGG + chr4.2:92832167-92832186 MS.gene053227:intron 40.0%
! ATTGAACAAAGCTAGCCTAG+TGG - chr4.2:92831598-92831617 None:intergenic 40.0%
! CAGCTTTTGTCCTCACTAAA+TGG + chr4.2:92832049-92832068 MS.gene053227:intron 40.0%
! CTCACACTTCTCGGATATTT+TGG + chr4.2:92833362-92833381 MS.gene053227:intron 40.0%
! GATTTGAAGCCACCAAAAAG+AGG - chr4.2:92828929-92828948 None:intergenic 40.0%
! TAATAGTTGAAGGCATGTGG+TGG + chr4.2:92832166-92832185 MS.gene053227:intron 40.0%
! TAGTGTTGAAGACTGGACTT+TGG + chr4.2:92829003-92829022 MS.gene053227:CDS 40.0%
! TGGACAAAAGCATGTCTTCT+TGG - chr4.2:92831991-92832010 None:intergenic 40.0%
!! TCATCTTCTGAAACTTCCAG+GGG - chr4.2:92833726-92833745 None:intergenic 40.0%
!! TCTTCTTGGTCGACTCTTTT+TGG - chr4.2:92831977-92831996 None:intergenic 40.0%
!! TGACTCTCATCTTAGCCTTT+TGG - chr4.2:92832011-92832030 None:intergenic 40.0%
!! TTTAGGCCTTGTTTCCTAAC+AGG + chr4.2:92833309-92833328 MS.gene053227:intron 40.0%
!!! CTTTTGGTTCACAATTGCAG+TGG - chr4.2:92830791-92830810 None:intergenic 40.0%
AAAGCAGCAAAAGAGGCTTC+TGG + chr4.2:92830235-92830254 MS.gene053227:intron 45.0%
AAAGCTGCAACGGAGTAACT+TGG + chr4.2:92830203-92830222 MS.gene053227:intron 45.0%
AACTCTCACCGGACTTTCAT+CGG - chr4.2:92829646-92829665 None:intergenic 45.0%
AAGCAGCAAAAGAGGCTTCT+GGG + chr4.2:92830236-92830255 MS.gene053227:intron 45.0%
AAGCTGCAACGGAGTAACTT+GGG + chr4.2:92830204-92830223 MS.gene053227:intron 45.0%
ACTTTCATCGGAAAGGTGAG+GGG - chr4.2:92829634-92829653 None:intergenic 45.0%
CCAATCATGTGCTTGAGGAT+TGG + chr4.2:92831379-92831398 MS.gene053227:intron 45.0%
CCAATCCTCAAGCACATGAT+TGG - chr4.2:92831382-92831401 None:intergenic 45.0%
CGCGGTTCAAATAGTAGTTG+TGG + chr4.2:92830590-92830609 MS.gene053227:intron 45.0%
CTATAAACTCAGCTCCAACC+TGG - chr4.2:92830738-92830757 None:intergenic 45.0%
GACTTTCATCGGAAAGGTGA+GGG - chr4.2:92829635-92829654 None:intergenic 45.0%
GAGTATGTTGAGCATGACAG+TGG - chr4.2:92832929-92832948 None:intergenic 45.0%
GCAAAGCAGTAAAGCTGCAA+CGG + chr4.2:92830193-92830212 MS.gene053227:intron 45.0%
GCAAATGAAATCGTAACGGC+CGG - chr4.2:92830916-92830935 None:intergenic 45.0%
GCTTGGCCATATTCAACTGA+AGG - chr4.2:92831162-92831181 None:intergenic 45.0%
GGCAAAGAGCAAGTGACTTT+AGG - chr4.2:92829043-92829062 None:intergenic 45.0%
GGCTTCAAATCTGAGAGAAC+TGG + chr4.2:92828938-92828957 MS.gene053227:CDS 45.0%
GTAACATGATGCAATGCAGG+TGG + chr4.2:92832876-92832895 MS.gene053227:intron 45.0%
GTGGTAACATGATGCAATGC+AGG + chr4.2:92832873-92832892 MS.gene053227:intron 45.0%
TCAAACTGTGGAAGCGAAAG+CGG - chr4.2:92829872-92829891 None:intergenic 45.0%
TCACCTTTCCGATGAAAGTC+CGG + chr4.2:92829635-92829654 MS.gene053227:intron 45.0%
TCATGTCAGCGAAATAGGCT+TGG - chr4.2:92829681-92829700 None:intergenic 45.0%
TCTCTACCAAGTCAGAAGCT+TGG - chr4.2:92830299-92830318 None:intergenic 45.0%
TTCATTGAAGCTCCAGTTGC+AGG - chr4.2:92833542-92833561 None:intergenic 45.0%
TTGAAGTCACAACTCCCTAG+CGG - chr4.2:92829390-92829409 None:intergenic 45.0%
! CAGGTTGGAGCTGAGTTTAT+AGG + chr4.2:92830736-92830755 MS.gene053227:intron 45.0%
! CTTTTCCACTCCACACTTCT+CGG - chr4.2:92833481-92833500 None:intergenic 45.0%
! GAAGACTGGACTTTGGAAGA+TGG + chr4.2:92829010-92829029 MS.gene053227:CDS 45.0%
!! ACCAAGAGCACCAAGAATAG+GGG - chr4.2:92833633-92833652 None:intergenic 45.0%
!! AGAAAGAGTATCGTTCCGCT+AGG + chr4.2:92829372-92829391 MS.gene053227:intron 45.0%
!! ATATATGGTGGAAGGTGCCT+TGG - chr4.2:92830386-92830405 None:intergenic 45.0%
!! CACCAAGAGCACCAAGAATA+GGG - chr4.2:92833634-92833653 None:intergenic 45.0%
!! CATGTTTGTTGTCACTGCAG+TGG + chr4.2:92831215-92831234 MS.gene053227:CDS 45.0%
!! CTATTCTTGGTGCTCTTGGT+GGG + chr4.2:92833633-92833652 MS.gene053227:CDS 45.0%
!! GAAAGAGTATCGTTCCGCTA+GGG + chr4.2:92829373-92829392 MS.gene053227:intron 45.0%
!! TATTCTTGGTGCTCTTGGTG+GGG + chr4.2:92833634-92833653 MS.gene053227:CDS 45.0%
!! TCGGAGGTTTCTGGTTTGTT+CGG - chr4.2:92833462-92833481 None:intergenic 45.0%
AATGCAGGTGGGAGAACTTG+CGG + chr4.2:92832888-92832907 MS.gene053227:intron 50.0%
ACCAAGTCAGAAGCTTGGCA+CGG - chr4.2:92830294-92830313 None:intergenic 50.0%
AGAGCCAAACCACAAGTGCA+CGG + chr4.2:92829328-92829347 MS.gene053227:intron 50.0%
AGCAGCAAAAGAGGCTTCTG+GGG + chr4.2:92830237-92830256 MS.gene053227:intron 50.0%
ATATACTGCAGGCCTGCAAC+TGG + chr4.2:92833527-92833546 MS.gene053227:intron 50.0%
ATTGGATGTGCTGGAGCTAC+TGG + chr4.2:92830832-92830851 MS.gene053227:CDS 50.0%
GCTGGTCCTAGTGTTCTTAC+TGG - chr4.2:92833566-92833585 None:intergenic 50.0%
GGACTTTCATCGGAAAGGTG+AGG - chr4.2:92829636-92829655 None:intergenic 50.0%
GTCCTCTTTCTTTCGCTCCA+AGG + chr4.2:92830366-92830385 MS.gene053227:intron 50.0%
TCACCGGACTTTCATCGGAA+AGG - chr4.2:92829641-92829660 None:intergenic 50.0%
TCCTGTCCCTCTTGCCAAAA+AGG + chr4.2:92829069-92829088 MS.gene053227:CDS 50.0%
TGCCTTGGAGCGAAAGAAAG+AGG - chr4.2:92830371-92830390 None:intergenic 50.0%
TGGAGCGAAAGAAAGAGGAC+TGG - chr4.2:92830366-92830385 None:intergenic 50.0%
! ACTCCTGGTGCTCCTCTTTT+TGG + chr4.2:92828914-92828933 MS.gene053227:CDS 50.0%
! ATTCATGAGTGGCGGTGTCA+CGG + chr4.2:92831134-92831153 MS.gene053227:CDS 50.0%
! TGAAGGCATGTGGTGGGATT+TGG + chr4.2:92832173-92832192 MS.gene053227:intron 50.0%
! TTTTGGCAAGAGGGACAGGA+GGG - chr4.2:92829069-92829088 None:intergenic 50.0%
!! ACCTTTTTGGCAAGAGGGAC+AGG - chr4.2:92829073-92829092 None:intergenic 50.0%
!! CAGGGGTAGAAGGTACTGAT+GGG - chr4.2:92828883-92828902 None:intergenic 50.0%
!! CCACCAAGAGCACCAAGAAT+AGG - chr4.2:92833635-92833654 None:intergenic 50.0%
!! CCTATTCTTGGTGCTCTTGG+TGG + chr4.2:92833632-92833651 MS.gene053227:CDS 50.0%
!! TTTTTGGCAAGAGGGACAGG+AGG - chr4.2:92829070-92829089 None:intergenic 50.0%
AACTGTGGAAGCGAAAGCGG+AGG - chr4.2:92829869-92829888 None:intergenic 55.0%
ACTCACAGCTCTTGTGTCGG+TGG - chr4.2:92831241-92831260 None:intergenic 55.0%
ACTGTGGAAGCGAAAGCGGA+GGG - chr4.2:92829868-92829887 None:intergenic 55.0%
ATCGGAAAGGTGAGGGGCTA+AGG - chr4.2:92829628-92829647 None:intergenic 55.0%
ATGCAGGTGGGAGAACTTGC+GGG + chr4.2:92832889-92832908 MS.gene053227:intron 55.0%
CCACACTTCTCGGAGGTTTC+TGG - chr4.2:92833471-92833490 None:intergenic 55.0%
CCAGAAACCTCCGAGAAGTG+TGG + chr4.2:92833468-92833487 MS.gene053227:intron 55.0%
CGAGAGCGGAGTCTTGATGT+TGG - chr4.2:92829801-92829820 None:intergenic 55.0%
GAAACTTCCAGGGGCAGAAG+AGG - chr4.2:92833717-92833736 None:intergenic 55.0%
GCAGCAAAAGAGGCTTCTGG+GGG + chr4.2:92830238-92830257 MS.gene053227:intron 55.0%
GTGACACCGCCACTCATGAA+TGG - chr4.2:92831135-92831154 None:intergenic 55.0%
GTTAAAGCCTCTTCTGCCCC+TGG + chr4.2:92833707-92833726 MS.gene053227:CDS 55.0%
TAGGCCGTGCACTTGTGGTT+TGG - chr4.2:92829335-92829354 None:intergenic 55.0%
TCGGAAAGGTGAGGGGCTAA+GGG - chr4.2:92829627-92829646 None:intergenic 55.0%
TTCCACTCCACACTTCTCGG+AGG - chr4.2:92833478-92833497 None:intergenic 55.0%
TTCGATAGGCCGTGCACTTG+TGG - chr4.2:92829340-92829359 None:intergenic 55.0%
TTTGGCAAGAGGGACAGGAG+GGG - chr4.2:92829068-92829087 None:intergenic 55.0%
! AACCTCCGAGAAGTGTGGAG+TGG + chr4.2:92833473-92833492 MS.gene053227:intron 55.0%
! CCTGGTGCTCCTCTTTTTGG+TGG + chr4.2:92828917-92828936 MS.gene053227:CDS 55.0%
!! CCACCAAAAAGAGGAGCACC+AGG - chr4.2:92828920-92828939 None:intergenic 55.0%
!! GCAGGGGTAGAAGGTACTGA+TGG - chr4.2:92828884-92828903 None:intergenic 55.0%
!! GCCCCTATTCTTGGTGCTCT+TGG + chr4.2:92833629-92833648 MS.gene053227:CDS 55.0%
AGAACTTGCGGGAATCGCGG+TGG + chr4.2:92832900-92832919 MS.gene053227:CDS 60.0%
GAACTTGCGGGAATCGCGGT+GGG + chr4.2:92832901-92832920 MS.gene053227:CDS 60.0%
GCCGTGCCAAGCTTCTGACT+TGG + chr4.2:92830290-92830309 MS.gene053227:intron 60.0%
GGGAGAACTTGCGGGAATCG+CGG + chr4.2:92832897-92832916 MS.gene053227:CDS 60.0%
GGTGAGGGGCTAAGGGAAAC+CGG - chr4.2:92829620-92829639 None:intergenic 60.0%
TTGGCAAGAGGGACAGGAGG+GGG - chr4.2:92829067-92829086 None:intergenic 60.0%
! GCAAAAGAGGCTTCTGGGGG+TGG + chr4.2:92830241-92830260 MS.gene053227:intron 60.0%
!! AGAGGAGCACCAGGAGTACC+TGG - chr4.2:92828911-92828930 None:intergenic 60.0%
!! AGGAGCACCAGGAGTACCTG+GGG - chr4.2:92828909-92828928 None:intergenic 60.0%
!! AGGAGTACCTGGGGTAGCAG+GGG - chr4.2:92828900-92828919 None:intergenic 60.0%
!! CAGGAGTACCTGGGGTAGCA+GGG - chr4.2:92828901-92828920 None:intergenic 60.0%
!! GAGGAGCACCAGGAGTACCT+GGG - chr4.2:92828910-92828929 None:intergenic 60.0%
CCTGCTACCCCAGGTACTCC+TGG + chr4.2:92828899-92828918 MS.gene053227:CDS 65.0%
CCTGGGGTAGCAGGGGTAGA+AGG - chr4.2:92828893-92828912 None:intergenic 65.0%
CCTTCTACCCCTGCTACCCC+AGG + chr4.2:92828890-92828909 MS.gene053227:CDS 65.0%
GCCCGTGCCAACATGTGGCA+CGG - chr4.2:92830272-92830291 None:intergenic 65.0%
GCCGTGCCACATGTTGGCAC+GGG + chr4.2:92830268-92830287 MS.gene053227:intron 65.0%
GGCCGTGCCACATGTTGGCA+CGG + chr4.2:92830267-92830286 MS.gene053227:intron 65.0%
! AGAGGCTTCTGGGGGTGGCA+CGG + chr4.2:92830246-92830265 MS.gene053227:intron 65.0%
!! CCAGGAGTACCTGGGGTAGC+AGG - chr4.2:92828902-92828921 None:intergenic 65.0%
!! CTTGGTGCTCTTGGTGGGGC+AGG + chr4.2:92833638-92833657 MS.gene053227:CDS 65.0%
GCAAGAGGGACAGGAGGGGG+AGG - chr4.2:92829064-92829083 None:intergenic 70.0%
GCACGGCCCGTGCCAACATG+TGG - chr4.2:92830277-92830296 None:intergenic 70.0%
GGCACGGCCGTGCCACATGT+TGG + chr4.2:92830262-92830281 MS.gene053227:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 92828863 92833745 92828863 ID=MS.gene053227
chr4.2 mRNA 92828863 92833745 92828863 ID=MS.gene053227.t1;Parent=MS.gene053227
chr4.2 exon 92828863 92829090 92828863 ID=MS.gene053227.t1.exon1;Parent=MS.gene053227.t1
chr4.2 CDS 92828863 92829090 92828863 ID=cds.MS.gene053227.t1;Parent=MS.gene053227.t1
chr4.2 exon 92830739 92830963 92830739 ID=MS.gene053227.t1.exon2;Parent=MS.gene053227.t1
chr4.2 CDS 92830739 92830963 92830739 ID=cds.MS.gene053227.t1;Parent=MS.gene053227.t1
chr4.2 exon 92831060 92831254 92831060 ID=MS.gene053227.t1.exon3;Parent=MS.gene053227.t1
chr4.2 CDS 92831060 92831254 92831060 ID=cds.MS.gene053227.t1;Parent=MS.gene053227.t1
chr4.2 exon 92832895 92832956 92832895 ID=MS.gene053227.t1.exon4;Parent=MS.gene053227.t1
chr4.2 CDS 92832895 92832956 92832895 ID=cds.MS.gene053227.t1;Parent=MS.gene053227.t1
chr4.2 exon 92833538 92833745 92833538 ID=MS.gene053227.t1.exon5;Parent=MS.gene053227.t1
chr4.2 CDS 92833538 92833745 92833538 ID=cds.MS.gene053227.t1;Parent=MS.gene053227.t1
Gene Sequence

>MS.gene053227

ATGGACAATGAGGAAATCCCATCAGTACCTTCTACCCCTGCTACCCCAGGTACTCCTGGTGCTCCTCTTTTTGGTGGCTTCAAATCTGAGAGAACTGGAAATGGTAGAAAGAACTCACTCCTCAAGAATTTAAAATGTTTTAGTGTTGAAGACTGGACTTTGGAAGATGGAGCCTTACCTAAAGTCACTTGCTCTTTGCCTCCCCCTCCTGTCCCTCTTGCCAAAAAGGTACATATTTTAATTAACATATCATATCATATATAATAAATCATGCATACACACATGTGCAATGATTTAAATCACATTCACATCTTAATTTTAAATGTTATAGAGAATTACGGTCAAGAATACATTAAGTGCGTGTTTAGAATCACTATGAGTTTAACGAAATCATACTAACATGATTTTTGTAAAGGTTTCAAAGTGTAACATTTTTTAAAATCCGGTGACATACTGTGATTTGATAGAGCCAAACCACAAGTGCACGGCCTATCGAAGTAATAGTAGTAAGAAAGAGTATCGTTCCGCTAGGGAGTTGTGACTTCAATCAACTTTTAGAGAATGATTAGAAGAGAAGAAAGCTTATAAAAAGGGGGGTTAATTGCTGAAAGTAAATAATATTTACTTTCAGCAATTAACCCCCAACAATAATAATAAAAGAGCCTTGGGATTATTGGTTTGTCATAACAACAAACCCTTCACTAGACAAGACTTAAACATCTAATTTTATGGGTTACACACTAATTTCTAAAGACCGGTTTCCCTTAGCCCCTCACCTTTCCGATGAAAGTCCGGTGAGAGTTTACTTCTAGCAACCAAGCCTATTTCGCTGACATGATTACTAGAAGATGCATAGAGGATTGAAACTACTCTTTGTCTCAATAATTGCAAAGACTATTTCACTGTTTTGCAATTATTGTCTAGATTCACTTGTTCCAACATCAAGACTCCGCTCTCGCTTTATGAATTGATGTTTGGGATGATGGATTAACGATTATCAAACCCTCCGCTTTCGCTTCCACAGTTTGATAATTGTTAATCCATGTTAAGACGGTGAATCTAGATTAGAAATTAGGGTTACATAGAAATTAGGGTTTAGGCTTGTTTTGTTTAGGATTGAGTCATTAGACTCCCCAATAATCCTAAGACGAAGAAGTCTACTCACTAACGTTCATTGTAGACATGGGGGAAGAAGAGAGAAAACAGTAATATAAAAGAGCAATAATATAAAGGTGAACTTTTATTCCAAGAACAAAAGATGAATGTTTATGGTGGAGTGCTACTCTATTTATAGCTTTACAATTGACTTAAAATCTAAGCAACTACAAGGGCAAAGCAGTAAAGCTGCAACGGAGTAACTTGGGCTCGAAGAAAAGCAGCAAAAGAGGCTTCTGGGGGTGGCACGGCCGTGCCACATGTTGGCACGGGCCGTGCCAAGCTTCTGACTTGGTAGAGACATATTTTTGTCTCGTATCTTCGTATTTTTGTACTGTATTTGCTCCAGTCCTCTTTCTTTCGCTCCAAGGCACCTTCCACCATATATTCATTCCTAAAATAAAATAAAAGACAATTTAAAGTAAAATATTCTAAAAGAAAATAAAATGCAATAAAATAAAACTAAATCTTAAATAAAACTAAACTAAATAAGGCAATAAATTAGACTATCTATGACTCATCATGATTCTGCCAAATACACCCTAATTTTAACATGTACTAAAACTTGATGTCGCGGTTCAAATAGTAGTTGTGGATTTATTTTAAATTTTATAACCTTGTATAGTTTCATACATGGTAAAAAAGTTAATAGGGGTCCTATTTTTGATATATTGATGTGTTAAATAATGTAGTTGGGTTGATTAATGTAATCATTTACCAGGTTGGAGCTGAGTTTATAGGCACATACATTCTAATGTTTGCTGGAATAGCCACTGCAATTGTGAACCAAAAGATACATAACTCAGAAACACTAATTGGATGTGCTGGAGCTACTGGACTTGCTGTTATGATCATAATTTTATCAACTGGTCACATTTCTGGTGCTCATCTTAATCCGGCCGTTACGATTTCATTTGCTGCATTAAAACACTTCCCATGGAAAAATGTAACAACAAAAAACAACCCTAAATTCATCTTCTAATTCAATTTTTAGACATGTTAATTAAAAAGTGCTTATTTTAATTTTGTGAATTAATTTTAGGTACCTTTGTATATTGCTGCACAAGTTTTGGCATCAATATGTGCTTCTTTTACTCTCAAAGGAGTTTTTCATCCATTCATGAGTGGCGGTGTCACGGTTCCTTCAGTTGAATATGGCCAAGCTTTTGCTTTAGAGTTTATTATCAGTTTTAATCTCATGTTTGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGAGTATATATTATTTATCATATATCCATATTCTTTTATAAGAACTTTAGTCTTGCATATATATTTTTGGTTTGAATTGAATGCTATATGTATATGTATATACACTAGTAAAATATGTTAGAACCAATCATGTGCTTGAGGATTGGTGTAGTACAATAGTCTATACTTTGTTTAAGAAAATAAGGAAATGCAAATAAACAAGAGGAACTAAAATCAGCATATATATATAATTAGAAACAAATAAAGAGGGTACAGAAATGTATGTAAGCATACAGTTTATGATTTGTAATTAGCACCCTTTCAGCACCAATCATTACTTTTGATATCTTATGATTCAAGCCACTAGGCTAGCTTTGTTCAATCAAGTATTATAACTCATTAAGTAAGTACAAAAACAACAAAAAAAAATTATAAAAGAAAAATTAATAGTTTACTCCATCAGAAATTGATTTCACAAAAAAAAAAAAAATATTAAAGGTACAATTGTATATATGGATATATTAAGAATATATATTTTTTCATAATAAATTTCAAAAAAATACTAACATATGTCCTTATGGTATTTGTTAGTGTACTTAAGATAAAAAATTTATATTGTAAATTAAGTTTTTTATTTTTCAAAAAAATAAAATTGATATTTTTTTAAACATGATTATTATTTATAAATTTCTTATCATGTACTCTTAAATTATAAGTTAGCATGACCTTAAAATTGAATCCAAAAAGAGTCGACCAAGAAGACATGCTTTTGTCCAAAAGGCTAAGATGAGAGTCAATGGAAAAGATATGTCAGCAGCTTTTGTCCTCACTAAATGGATATATAAAATTCGTTTTTTGTGACCACTAATTGTATCAATGAACATGCATACTGCATCCATGTTTTGCAGTGAGATATTTGACTCTATACTGATAATAGTTGAAGGCATGTGGTGGGATTTGGAATCTTTGCTTGTTGCATCAAATAATAACTATGCATAAATATTGAAAATAGTTTATTCGAAAAAATAGTACTTCCTCCGTTCCTTTATAATTGTCACTTTTGTATAAAATTTTTGTTTTTAATTAATTGTCGTTTTCAAAGTTCAAAGTATCATTAAATGTGGCTTTACCTATATTACCCCTATATATTTATTGCAGAGAGAAATGTATGAAATGAAGTATTAAATGATTAAGGTTATTATAGGAAAAAGAAAAATTGTTGTATCAAAAGTAGTAAAAGTATTTGTTGTCTTGGTTTGTGTAAAAAGTCAAAATGTGACAATTAAAAAGGAACAGAGGGAGTATATCCTTACTGAACATGAACATGTAGAAACACATACTCCCTCTGTCTCATATATATCAACAAAAACAAAAATTCAATTAGAAGATTTAAAATAAATAAATAAATACAAGAAATTTTTAATAAATTCCACTTATTTAATTATATTGTGTTTGAAAAACTCTTTAGTTAATTAAAAAGTTAAATTTTATTAATCTAATTTATCTTTGTGAAACAAGTTTTGATAAATTACAGTTTGGAGAATTTATTATTATTTGATATAGATAGATGAATCTCCATATTATTGTTTTTTTTGACAAAGGATCTCTTTATGAATTAATGAATGTCGATAATGACTTGTGGTAACATGATGCAATGCAGGTGGGAGAACTTGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAACATACTCATTGCTGGGTATGTTCCAACTTTCACTCCTCATTATTTTAATCACATTCGTGTTTATACAATTGATCTAATTAGTATGTATTGTGAATGTAAATATTTGTTTATCATCAATCATTACTAGACCATTAAATATATATTTTTATTATCAATCAAAATGTGTGTTTATCGTCCTCGTGAACATAACTCAATTGACAGATACGTTGCAAATTCTTAAGGTATGAAGTTCGAACTTGAGATTCCTCATTTGCTTTAAGAGTTAAATTTCTAGACACTAAAATATTTAGTGGAAAAAACACATTTGTATACCCGACAAAACAAATGATATAAACTTAACTAAGAGTGAGAAAGATCCAATATTCCATTTAGGCCTTGTTTCCTAACAGGATCTTATTGTTTGCAAATTTCTTTTCTTATCTCACACTTCTCGGATATTTTGGTTTGTCTAGATTTTGAAATTCAGACATGTAAAAAAGGTGTAAACACCTGTTTTTACGTGTATGTATTTTAAAATCCGAACAAACCAGAAACCTCCGAGAAGTGTGGAGTGGAAAAGAAACAATCTTATTGTTTTGACACTAAATATACTGCAGGCCTGCAACTGGAGCTTCAATGAATCCAGTAAGAACACTAGGACCAGCAATTGCTGCAAACAACTACAAAGGCATATGGCTATATCTCATAGCCCCTATTCTTGGTGCTCTTGGTGGGGCAGGAGCTTACACTGCTGTCAAGCTTCCTGATGAAGAGTTTAACTCTGAGGTTAAAGCCTCTTCTGCCCCTGGAAGTTTCAGAAGATGA
Protein sequence

>MS.gene053227.t1

MDNEEIPSVPSTPATPGTPGAPLFGGFKSERTGNGRKNSLLKNLKCFSVEDWTLEDGALPKVTCSLPPPPVPLAKKVGAEFIGTYILMFAGIATAIVNQKIHNSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYIAAQVLASICASFTLKGVFHPFMSGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGASMNPVRTLGPAIAANNYKGIWLYLIAPILGALGGAGAYTAVKLPDEEFNSEVKASSAPGSFRR