AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85956

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85956.t1 MTR_2g104940 97.419 310 5 1 1 307 1 310 0.0 608
MS.gene85956.t1 MTR_4g006730 82.581 310 43 3 4 307 1 305 2.73e-180 499
MS.gene85956.t1 MTR_4g006730 83.884 242 28 3 4 239 1 237 1.89e-139 394
MS.gene85956.t1 MTR_4g006730 87.156 218 28 0 90 307 1 218 6.62e-132 374
MS.gene85956.t1 MTR_4g006630 86.697 218 29 0 90 307 1 218 3.07e-131 372
MS.gene85956.t1 MTR_1g097840 57.566 304 109 4 8 307 13 300 1.18e-109 320
MS.gene85956.t1 MTR_1g097840 57.627 236 84 2 8 239 13 236 1.76e-81 248
MS.gene85956.t1 MTR_8g087710 48.473 262 130 2 42 300 4 263 1.41e-76 235
MS.gene85956.t1 MTR_8g087720 51.542 227 105 2 77 300 38 262 1.42e-74 230
MS.gene85956.t1 MTR_2g017660 51.046 239 113 2 73 307 35 273 1.85e-74 230
MS.gene85956.t1 MTR_2g017590 49.206 252 119 3 53 300 14 260 8.11e-73 226
MS.gene85956.t1 MTR_2g017620 49.206 252 119 3 53 300 2 248 3.13e-72 223
MS.gene85956.t1 MTR_2g017620 49.206 252 119 3 53 300 16 262 3.39e-72 224
MS.gene85956.t1 MTR_4g006650 82.979 141 15 1 78 218 5 136 5.41e-72 225
MS.gene85956.t1 MTR_7g010650 46.121 232 122 1 72 303 32 260 1.43e-71 223
MS.gene85956.t1 MTR_4g084880 44.697 264 134 4 53 307 8 268 2.47e-70 219
MS.gene85956.t1 MTR_2g017570 51.584 221 102 2 73 290 34 252 1.76e-69 217
MS.gene85956.t1 MTR_2g017610 52.535 217 98 2 73 286 34 248 2.13e-69 217
MS.gene85956.t1 MTR_2g017620 54.348 184 77 2 121 300 1 181 2.06e-60 191
MS.gene85956.t1 MTR_5g079570 45.495 222 116 3 73 290 36 256 2.21e-57 186
MS.gene85956.t1 MTR_3g008920 47.685 216 109 3 73 286 22 235 3.43e-55 180
MS.gene85956.t1 MTR_5g063930 43.779 217 116 2 77 289 37 251 6.11e-55 179
MS.gene85956.t1 MTR_8g087720 53.012 166 73 2 77 239 38 201 2.05e-50 166
MS.gene85956.t1 MTR_1g070385 40.175 229 137 0 75 303 60 288 3.29e-48 172
MS.gene85956.t1 MTR_8g087720 50.685 146 67 2 77 219 38 181 4.74e-39 136
MS.gene85956.t1 MTR_7g010650 43.243 148 84 0 72 219 32 179 1.58e-38 135
MS.gene85956.t1 MTR_2g101370 39.286 224 116 8 81 290 24 241 3.06e-32 120
MS.gene85956.t1 MTR_1g006490 37.073 205 109 7 82 274 24 220 6.22e-29 111
MS.gene85956.t1 MTR_8g013680 35.749 207 115 4 81 274 23 224 3.57e-27 107
MS.gene85956.t1 MTR_1g077540 34.404 218 135 3 81 290 25 242 5.24e-26 103
MS.gene85956.t1 MTR_1g006590 36.098 205 111 8 82 274 24 220 5.86e-25 100
MS.gene85956.t1 MTR_6g069040 32.287 223 143 3 81 295 25 247 2.52e-24 99.4
MS.gene85956.t1 MTR_2g094270 31.120 241 132 7 68 275 22 261 2.34e-23 97.4
MS.gene85956.t1 MTR_5g012810 34.783 207 116 4 81 274 23 223 3.92e-23 95.9
MS.gene85956.t1 MTR_3g118010 30.453 243 142 7 70 285 19 261 8.62e-23 95.9
MS.gene85956.t1 MTR_4g063090 33.168 202 127 4 82 275 26 227 1.51e-21 92.0
MS.gene85956.t1 MTR_1g115405 29.075 227 153 3 81 299 25 251 6.83e-21 90.1
MS.gene85956.t1 MTR_2g094270 30.973 226 125 6 68 263 22 246 1.92e-20 89.4
MS.gene85956.t1 MTR_7g101190 28.452 239 140 7 68 275 21 259 1.26e-18 84.3
MS.gene85956.t1 MTR_7g103030 33.010 206 121 6 81 274 25 225 1.92e-18 83.2
MS.gene85956.t1 MTR_3g070210 29.508 244 144 8 70 285 37 280 3.01e-18 83.6
MS.gene85956.t1 MTR_8g098375 30.638 235 133 9 70 275 34 267 1.45e-17 81.6
MS.gene85956.t1 MTR_4g415300 29.717 212 131 7 81 275 60 270 1.83e-16 78.6
MS.gene85956.t1 MTR_5g010150 30.189 212 131 6 81 275 56 267 2.62e-16 77.8
MS.gene85956.t1 MTR_4g059390 27.197 239 141 7 70 275 21 259 2.82e-16 77.8
MS.gene85956.t1 MTR_3g070210 30.093 216 126 7 70 260 37 252 1.24e-15 75.9
MS.gene85956.t1 MTR_7g023350 27.753 227 156 4 81 299 25 251 1.36e-15 75.5
MS.gene85956.t1 MTR_5g082070 28.692 237 135 8 70 275 37 270 3.33e-15 74.7
MS.gene85956.t1 MTR_2g060360 28.571 224 145 6 81 293 23 242 7.93e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85956.t1 AT1G80760 76.923 312 57 4 4 307 1 305 5.20e-165 461
MS.gene85956.t1 AT4G10380 67.416 267 75 3 43 307 48 304 4.71e-119 344
MS.gene85956.t1 AT5G37820 46.484 256 129 4 49 300 16 267 5.38e-72 224
MS.gene85956.t1 AT5G37820 46.484 256 129 4 49 300 52 303 1.04e-71 224
MS.gene85956.t1 AT4G19030 43.686 293 151 5 26 306 2 292 1.46e-70 221
MS.gene85956.t1 AT5G37810 46.964 247 125 3 56 300 25 267 5.98e-70 219
MS.gene85956.t1 AT4G18910 41.472 299 146 4 26 306 2 289 2.36e-69 218
MS.gene85956.t1 AT1G31885 45.600 250 128 2 65 306 31 280 2.24e-66 211
MS.gene85956.t1 AT1G31885 46.903 226 112 2 89 306 1 226 2.51e-61 196
MS.gene85956.t1 AT2G34390 40.217 276 148 5 43 307 13 282 1.98e-54 179
MS.gene85956.t1 AT2G34390 42.083 240 123 4 78 307 7 240 1.27e-51 170
MS.gene85956.t1 AT4G19030 44.000 225 112 5 26 238 2 224 2.85e-49 164
MS.gene85956.t1 AT4G18910 42.241 232 105 4 26 239 2 222 1.97e-48 161
MS.gene85956.t1 AT3G06100 38.208 212 130 1 77 287 46 257 1.14e-43 150
MS.gene85956.t1 AT3G06100 38.389 211 129 1 81 290 2 212 6.19e-43 147
MS.gene85956.t1 AT4G19030 41.748 206 106 5 26 219 2 205 1.65e-38 135
MS.gene85956.t1 AT2G34390 38.942 208 113 4 43 239 13 217 8.95e-35 126
MS.gene85956.t1 AT3G16240 37.198 207 112 5 81 274 23 224 9.80e-30 114
MS.gene85956.t1 AT2G34390 37.368 190 105 4 43 221 13 199 7.85e-28 108
MS.gene85956.t1 AT2G25810 35.885 209 116 7 77 274 19 220 3.23e-26 104
MS.gene85956.t1 AT5G47450 34.783 230 124 7 81 289 23 247 3.94e-26 104
MS.gene85956.t1 AT2G29870 46.957 115 58 1 193 307 22 133 9.43e-26 100
MS.gene85956.t1 AT4G17340 33.816 207 119 4 81 274 23 224 2.22e-24 99.4
MS.gene85956.t1 AT3G26520 34.783 207 117 6 81 274 26 227 6.03e-23 95.9
MS.gene85956.t1 AT2G36830 34.783 207 117 6 81 274 25 226 7.19e-23 95.5
MS.gene85956.t1 AT4G35100 30.864 243 141 7 70 285 20 262 4.12e-22 94.0
MS.gene85956.t1 AT4G35100 30.864 243 141 7 70 285 20 262 4.12e-22 94.0
MS.gene85956.t1 AT2G16850 30.328 244 141 7 70 285 18 260 5.24e-22 93.6
MS.gene85956.t1 AT5G60660 27.099 262 158 7 50 279 3 263 1.58e-20 89.7
MS.gene85956.t1 AT3G06100 34.532 139 90 1 153 290 41 179 7.30e-20 85.9
MS.gene85956.t1 AT3G54820 30.833 240 133 7 68 275 20 258 1.69e-19 87.0
MS.gene85956.t1 AT1G73190 30.493 223 142 4 81 290 28 250 1.61e-18 84.0
MS.gene85956.t1 AT4G01470 30.275 218 134 5 81 285 25 237 2.14e-18 83.2
MS.gene85956.t1 AT1G17810 29.956 227 142 6 81 292 28 252 7.20e-18 82.0
MS.gene85956.t1 AT3G53420 27.917 240 140 7 68 275 21 259 1.47e-17 81.6
MS.gene85956.t1 AT3G53420 27.917 240 140 7 68 275 21 259 1.47e-17 81.6
MS.gene85956.t1 AT2G37170 27.308 260 145 8 48 275 10 257 1.53e-17 81.6
MS.gene85956.t1 AT2G37170 28.352 261 141 9 48 275 53 300 2.44e-17 81.6
MS.gene85956.t1 AT2G45960 31.915 235 129 9 70 275 34 266 7.01e-17 79.7
MS.gene85956.t1 AT2G37180 27.308 260 145 8 48 275 10 257 1.18e-16 79.0
MS.gene85956.t1 AT4G23400 30.660 212 129 6 81 275 57 267 1.33e-16 79.0
MS.gene85956.t1 AT4G00430 29.487 234 136 8 70 275 35 267 1.47e-16 78.6
MS.gene85956.t1 AT1G31885 41.758 91 53 0 63 153 29 119 2.17e-16 75.1
MS.gene85956.t1 AT1G01620 30.660 212 129 6 81 275 56 266 2.51e-16 78.2
MS.gene85956.t1 AT2G39010 28.333 240 137 7 70 275 20 258 2.81e-16 77.8
MS.gene85956.t1 AT3G61430 31.925 213 125 7 81 275 56 266 3.23e-16 77.8
MS.gene85956.t1 AT3G61430 31.925 213 125 7 81 275 56 266 3.23e-16 77.8
MS.gene85956.t1 AT3G47440 28.017 232 150 6 81 300 27 253 2.28e-15 74.7
MS.gene85956.t1 AT1G01620 32.402 179 106 5 111 275 17 194 1.29e-14 72.0
MS.gene85956.t1 AT2G45960 30.594 219 126 7 70 263 34 251 2.26e-14 72.8
MS.gene85956.t1 AT2G45960 31.818 220 122 8 70 263 34 251 2.39e-14 72.4

Find 89 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGACGCTCCTGTTAT+TGG 0.213047 2.1:-1071335 None:intergenic
CATCTTCTAAGTTCCATTCT+TGG 0.216409 2.1:-1070154 None:intergenic
GTGACTCCACCACTCATAAA+AGG 0.246044 2.1:-1070840 None:intergenic
TCTCCGAGCCTTGTGTCTTT+TGG 0.294166 2.1:-1070456 None:intergenic
CTTTGCATTATCATCTTCTT+CGG 0.298809 2.1:-1071480 None:intergenic
CAGATAGGAGCCGAGTTTAT+AGG 0.306620 2.1:+1070388 MS.gene85956:intron
GTATATTGGTGCACAAGTTT+TGG 0.339591 2.1:+1070776 MS.gene85956:CDS
AGATAGGAGCCGAGTTTATA+GGG 0.358525 2.1:+1070389 MS.gene85956:intron
GCTGGACCTAGAGTTCTTAC+TGG 0.377381 2.1:-1071359 None:intergenic
CTGCGTTGCAGGCCAATAAC+AGG 0.388557 2.1:+1071323 MS.gene85956:intron
CTCTCCACCGGCCACATCTC+TGG 0.392505 2.1:+1070529 MS.gene85956:CDS
ACCGTTCCTTCCGGAGGATA+TGG 0.393092 2.1:+1070861 MS.gene85956:CDS
TAGTTATTTGCAGCTATAGC+TGG 0.401428 2.1:-1071377 None:intergenic
ATTGGGTGTGCTACCTCTAC+TGG 0.401500 2.1:+1070484 MS.gene85956:CDS
CAAATAACTACAAAGCCATA+TGG 0.404031 2.1:+1071390 MS.gene85956:CDS
CCAGGAGTGCCTGGTGTTGA+TGG 0.409657 2.1:-1070035 None:intergenic
ACATTGATTCTGATGTTTGC+TGG 0.409739 2.1:+1070412 MS.gene85956:CDS
CAAGGCTCGGAGACTCTGAT+TGG 0.413496 2.1:+1070466 MS.gene85956:CDS
TTTGCATTATCATCTTCTTC+GGG 0.414167 2.1:-1071479 None:intergenic
TGCAAGAGGCACAGGAGGAG+GGG 0.422658 2.1:-1070213 None:intergenic
CATTGATTCTGATGTTTGCT+GGG 0.434089 2.1:+1070413 MS.gene85956:CDS
CTCAAGAATTGTAAATGCTT+CGG 0.434143 2.1:+1070128 MS.gene85956:CDS
CCACCTAGAGCTCCAAGTAT+TGG 0.435294 2.1:-1071428 None:intergenic
GGTGGAGTCACCGTTCCTTC+CGG 0.437337 2.1:+1070852 MS.gene85956:CDS
GTGCTGCATTTGCTCTCAAA+GGG 0.443470 2.1:+1070808 MS.gene85956:CDS
TTTGCAAGAGGCACAGGAGG+AGG 0.446500 2.1:-1070215 None:intergenic
TATCTCTTAGCTCCAATACT+TGG 0.455159 2.1:+1071416 MS.gene85956:CDS
AGTTGATCATCTTCTAAAGC+TGG 0.459544 2.1:-1071525 None:intergenic
TTGCAGGTGCCTATGTATAT+TGG 0.461576 2.1:+1070762 MS.gene85956:intron
CTTCAATGCAGCAAAAGAAA+TGG 0.468532 2.1:-1070575 None:intergenic
ATGCTCAATATACTAATAGC+AGG 0.472157 2.1:+1071204 MS.gene85956:CDS
CCATCAACACCAGGCACTCC+TGG 0.473568 2.1:+1070035 MS.gene85956:CDS
TTGCAAGAGGCACAGGAGGA+GGG 0.478192 2.1:-1070214 None:intergenic
AGAGGTACACCAGGAGTGCC+TGG 0.482854 2.1:-1070044 None:intergenic
AAATAACTACAAAGCCATAT+GGG 0.491686 2.1:+1071391 MS.gene85956:CDS
AATGCTTCGGTGTCCAAGAA+TGG 0.493128 2.1:+1070141 MS.gene85956:CDS
CTTGGAGCTCTAGGTGGGGC+AGG 0.496173 2.1:+1071434 MS.gene85956:CDS
GCAAGAGGCACAGGAGGAGG+GGG 0.497170 2.1:-1070212 None:intergenic
GCATTTACAATTCTTGAGTA+GGG 0.497185 2.1:-1070123 None:intergenic
GCAAAAGAAATGGTGACTGC+AGG 0.502542 2.1:-1070565 None:intergenic
CAAGAATGGAACTTAGAAGA+TGG 0.514046 2.1:+1070155 MS.gene85956:CDS
GTTGATCATCTTCTAAAGCT+GGG 0.517734 2.1:-1071524 None:intergenic
AATGGAACATATTAATAATG+AGG 0.519868 2.1:+1070007 None:intergenic
ATGAACCCAGTAAGAACTCT+AGG 0.522426 2.1:+1071353 MS.gene85956:CDS
TAATCTAATGTTCGTTGTCA+CGG 0.524885 2.1:+1070917 MS.gene85956:CDS
GCTCCAATACTTGGAGCTCT+AGG 0.532633 2.1:+1071425 MS.gene85956:CDS
AGCATTTACAATTCTTGAGT+AGG 0.536216 2.1:-1070124 None:intergenic
TGACTCCACCACTCATAAAA+GGG 0.537986 2.1:-1070839 None:intergenic
GCTTTGGTTACATGCTTCCA+CGG 0.548483 2.1:-1070604 None:intergenic
TGTGCTGCATTTGCTCTCAA+AGG 0.550088 2.1:+1070807 MS.gene85956:CDS
AAGGCTCGGAGACTCTGATT+GGG 0.552417 2.1:+1070467 MS.gene85956:CDS
GGTTTAAGTCTGAGAGAAGC+GGG 0.553612 2.1:+1070075 MS.gene85956:CDS
AATGTTCGTTGTCACGGCAG+TGG 0.554743 2.1:+1070923 MS.gene85956:CDS
AAGTCTGAGAGAAGCGGGAA+TGG 0.555069 2.1:+1070080 MS.gene85956:CDS
CAGAGATGTGGCCGGTGGAG+AGG 0.557528 2.1:-1070528 None:intergenic
CTGGACCTAGAGTTCTTACT+GGG 0.557635 2.1:-1071358 None:intergenic
TGCTACCTCTACTGGTCTTG+CGG 0.560160 2.1:+1070492 MS.gene85956:CDS
CAATACTTGGAGCTCTAGGT+GGG 0.562103 2.1:+1071429 MS.gene85956:CDS
GAACTAGCAGGAATTGCAGT+GGG 0.569469 2.1:+1071171 MS.gene85956:CDS
CCAATACTTGGAGCTCTAGG+TGG 0.572700 2.1:+1071428 MS.gene85956:CDS
ACCATATCCTCCGGAAGGAA+CGG 0.576185 2.1:-1070862 None:intergenic
AGCTAAGAGATAGACCCATA+TGG 0.576739 2.1:-1071405 None:intergenic
CTGCATTGAAGCACTTCCCG+TGG 0.578067 2.1:+1070587 MS.gene85956:CDS
CATAACCGCAAGACCAGTAG+AGG 0.586587 2.1:-1070497 None:intergenic
CATTAATGAGCAGGTAACTG+TGG 0.587885 2.1:-1070186 None:intergenic
ATGATCATCATCCTCTCCAC+CGG 0.588983 2.1:+1070517 MS.gene85956:CDS
CAAAAGAAATGGTGACTGCA+GGG 0.592708 2.1:-1070564 None:intergenic
AAAAGCTTGACCATATCCTC+CGG 0.599263 2.1:-1070871 None:intergenic
ACTTGTGCACCAATATACAT+AGG 0.600697 2.1:-1070771 None:intergenic
AATCAATGTCCCTATAAACT+CGG 0.603006 2.1:-1070398 None:intergenic
CTTTGGTTACATGCTTCCAC+GGG 0.610743 2.1:-1070603 None:intergenic
AGCACCAGAGATGTGGCCGG+TGG 0.615438 2.1:-1070533 None:intergenic
TGAGATGAGCACCAGAGATG+TGG 0.617163 2.1:-1070540 None:intergenic
TGCTGCATTTGCTCTCAAAG+GGG 0.620449 2.1:+1070809 MS.gene85956:CDS
GGAGTCACCGTTCCTTCCGG+AGG 0.622617 2.1:+1070855 MS.gene85956:CDS
ACTCACAGCTCTTGTGTCGG+TGG 0.623869 2.1:-1070946 None:intergenic
GGGTTTAAGTCTGAGAGAAG+CGG 0.625558 2.1:+1070074 MS.gene85956:CDS
ATGTAGGTAGGAGAACTAGC+AGG 0.625936 2.1:+1071159 MS.gene85956:intron
ATTAATGAGCAGGTAACTGT+GGG 0.626119 2.1:-1070185 None:intergenic
AGAACTAGCAGGAATTGCAG+TGG 0.628860 2.1:+1071170 MS.gene85956:CDS
TTGATCATCTTCTAAAGCTG+GGG 0.642052 2.1:-1071523 None:intergenic
GAACCAAAAGACACAAGGCT+CGG 0.650309 2.1:+1070453 MS.gene85956:CDS
GCTTGACCATATCCTCCGGA+AGG 0.651188 2.1:-1070867 None:intergenic
AATACTTGGAGCTCTAGGTG+GGG 0.656773 2.1:+1071430 MS.gene85956:CDS
TGCTCAATATACTAATAGCA+GGG 0.657754 2.1:+1071205 MS.gene85956:CDS
AATACTCACAGCTCTTGTGT+CGG 0.671145 2.1:-1070949 None:intergenic
ATGAGCACCAGAGATGTGGC+CGG 0.675762 2.1:-1070536 None:intergenic
GAGGAAATTCCATCAACACC+AGG 0.691992 2.1:+1070026 MS.gene85956:CDS
ATTGTGAACCAAAAGACACA+AGG 0.703696 2.1:+1070448 MS.gene85956:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTATAAATTATAATTGC+AGG + chr2.1:1070746-1070765 MS.gene85956:intron 15.0%
!! TAATTTCAACAACTTTAATT+AGG - chr2.1:1070656-1070675 None:intergenic 15.0%
!!! CATATGTTCAAATTTTAATT+TGG - chr2.1:1071074-1071093 None:intergenic 15.0%
!! ACAACTTTAATTAGGAAATT+AGG - chr2.1:1070648-1070667 None:intergenic 20.0%
!! ATAACCATAAACATCAATTA+GGG - chr2.1:1071141-1071160 None:intergenic 20.0%
!! TATTAGCTAAAAGTTACTAT+AGG - chr2.1:1070979-1070998 None:intergenic 20.0%
!! TTAAAATTTGAACATATGCT+TGG + chr2.1:1071076-1071095 MS.gene85956:intron 20.0%
! AAATAACTACAAAGCCATAT+GGG + chr2.1:1071391-1071410 MS.gene85956:CDS 25.0%
! AGTTTGAAAAGAAAAAGAGA+AGG + chr2.1:1071017-1071036 MS.gene85956:intron 25.0%
! ATATATATGTTCATGACAAG+TGG - chr2.1:1071294-1071313 None:intergenic 25.0%
! ATTGATGTTTATGGTTATGT+AGG + chr2.1:1071143-1071162 MS.gene85956:intron 25.0%
! ATTTATGTGTGTCTAATCTT+TGG + chr2.1:1070288-1070307 MS.gene85956:intron 25.0%
! CATAACCATAAACATCAATT+AGG - chr2.1:1071142-1071161 None:intergenic 25.0%
! TATATATGTTCATGACAAGT+GGG - chr2.1:1071293-1071312 None:intergenic 25.0%
! TGTCATGAACATATATATGA+TGG + chr2.1:1071296-1071315 MS.gene85956:intron 25.0%
!!! ATATATACCTTTTTTGCAAG+AGG - chr2.1:1070230-1070249 None:intergenic 25.0%
AATCAATGTCCCTATAAACT+CGG - chr2.1:1070401-1070420 None:intergenic 30.0%
AGCATTTACAATTCTTGAGT+AGG - chr2.1:1070127-1070146 None:intergenic 30.0%
ATATATGTTCATGACAAGTG+GGG - chr2.1:1071292-1071311 None:intergenic 30.0%
ATGCTCAATATACTAATAGC+AGG + chr2.1:1071204-1071223 MS.gene85956:CDS 30.0%
ATGTTTATGGTTATGTAGGT+AGG + chr2.1:1071147-1071166 MS.gene85956:intron 30.0%
CAAATAACTACAAAGCCATA+TGG + chr2.1:1071390-1071409 MS.gene85956:CDS 30.0%
CTCAAGAATTGTAAATGCTT+CGG + chr2.1:1070128-1070147 MS.gene85956:CDS 30.0%
CTTTGCATTATCATCTTCTT+CGG - chr2.1:1071483-1071502 None:intergenic 30.0%
GCATTTACAATTCTTGAGTA+GGG - chr2.1:1070126-1070145 None:intergenic 30.0%
TAATCTAATGTTCGTTGTCA+CGG + chr2.1:1070917-1070936 MS.gene85956:CDS 30.0%
TAATTAGGAAATTAGGCTGA+AGG - chr2.1:1070641-1070660 None:intergenic 30.0%
TACTTAGCACTTCAATGATA+TGG - chr2.1:1070334-1070353 None:intergenic 30.0%
TGCTCAATATACTAATAGCA+GGG + chr2.1:1071205-1071224 MS.gene85956:CDS 30.0%
TTTGCATTATCATCTTCTTC+GGG - chr2.1:1071482-1071501 None:intergenic 30.0%
AAACTACCTGTGTTACAGAT+AGG + chr2.1:1070373-1070392 MS.gene85956:intron 35.0%
ACTTGTGCACCAATATACAT+AGG - chr2.1:1070774-1070793 None:intergenic 35.0%
ATTAATGAGCAGGTAACTGT+GGG - chr2.1:1070188-1070207 None:intergenic 35.0%
ATTGTGAACCAAAAGACACA+AGG + chr2.1:1070448-1070467 MS.gene85956:CDS 35.0%
CAAGAATGGAACTTAGAAGA+TGG + chr2.1:1070155-1070174 MS.gene85956:CDS 35.0%
CATCTTCTAAGTTCCATTCT+TGG - chr2.1:1070157-1070176 None:intergenic 35.0%
CTTCAATGCAGCAAAAGAAA+TGG - chr2.1:1070578-1070597 None:intergenic 35.0%
GAAATTAGGCTGAAGGATTA+AGG - chr2.1:1070634-1070653 None:intergenic 35.0%
GAAGGATTAAGGAAAAGCTT+TGG - chr2.1:1070623-1070642 None:intergenic 35.0%
GAGTCCCTAATTGATGTTTA+TGG + chr2.1:1071134-1071153 MS.gene85956:intron 35.0%
GATGATATTATCCCCTATGT+CGG - chr2.1:1071052-1071071 None:intergenic 35.0%
TAGTTATTTGCAGCTATAGC+TGG - chr2.1:1071380-1071399 None:intergenic 35.0%
TATCTCTTAGCTCCAATACT+TGG + chr2.1:1071416-1071435 MS.gene85956:CDS 35.0%
! ATCTGTAACACAGGTAGTTT+TGG - chr2.1:1070373-1070392 None:intergenic 35.0%
! GTATATTGGTGCACAAGTTT+TGG + chr2.1:1070776-1070795 MS.gene85956:CDS 35.0%
! GTTTTTCACCCTTTTATGAG+TGG + chr2.1:1070831-1070850 MS.gene85956:CDS 35.0%
!! ACATTGATTCTGATGTTTGC+TGG + chr2.1:1070412-1070431 MS.gene85956:CDS 35.0%
!! CATTGATTCTGATGTTTGCT+GGG + chr2.1:1070413-1070432 MS.gene85956:CDS 35.0%
AAAAGCTTGACCATATCCTC+CGG - chr2.1:1070874-1070893 None:intergenic 40.0%
AATACTCACAGCTCTTGTGT+CGG - chr2.1:1070952-1070971 None:intergenic 40.0%
AGATAGGAGCCGAGTTTATA+GGG + chr2.1:1070389-1070408 MS.gene85956:intron 40.0%
AGCTAAGAGATAGACCCATA+TGG - chr2.1:1071408-1071427 None:intergenic 40.0%
ATGAACCCAGTAAGAACTCT+AGG + chr2.1:1071353-1071372 MS.gene85956:CDS 40.0%
CAAAAGAAATGGTGACTGCA+GGG - chr2.1:1070567-1070586 None:intergenic 40.0%
CATTAATGAGCAGGTAACTG+TGG - chr2.1:1070189-1070208 None:intergenic 40.0%
GACTTAAACCCACCAAAAAG+AGG - chr2.1:1070065-1070084 None:intergenic 40.0%
GAGAGTGATAAGTGAGAGTT+AGG - chr2.1:1071242-1071261 None:intergenic 40.0%
TGACTCCACCACTCATAAAA+GGG - chr2.1:1070842-1070861 None:intergenic 40.0%
TTAATTGCTCTTCACGCGAA+GGG - chr2.1:1071112-1071131 None:intergenic 40.0%
TTCATTGACGCTCCTGTTAT+TGG - chr2.1:1071338-1071357 None:intergenic 40.0%
TTGCAGGTGCCTATGTATAT+TGG + chr2.1:1070762-1070781 MS.gene85956:intron 40.0%
! TTTCACCCTTTTATGAGTGG+TGG + chr2.1:1070834-1070853 MS.gene85956:CDS 40.0%
!!! CTTTTGGTTCACAATAGCAG+TGG - chr2.1:1070443-1070462 None:intergenic 40.0%
AAGGAAGATGAAGCCGACAT+AGG + chr2.1:1071036-1071055 MS.gene85956:intron 45.0%
AGAACTAGCAGGAATTGCAG+TGG + chr2.1:1071170-1071189 MS.gene85956:CDS 45.0%
AGGAAGATGAAGCCGACATA+GGG + chr2.1:1071037-1071056 MS.gene85956:intron 45.0%
ATGATCATCATCCTCTCCAC+CGG + chr2.1:1070517-1070536 MS.gene85956:CDS 45.0%
ATGTAGGTAGGAGAACTAGC+AGG + chr2.1:1071159-1071178 MS.gene85956:intron 45.0%
CAGATAGGAGCCGAGTTTAT+AGG + chr2.1:1070388-1070407 MS.gene85956:intron 45.0%
CTGGACCTAGAGTTCTTACT+GGG - chr2.1:1071361-1071380 None:intergenic 45.0%
CTTTGGTTACATGCTTCCAC+GGG - chr2.1:1070606-1070625 None:intergenic 45.0%
GAACCAAAAGACACAAGGCT+CGG + chr2.1:1070453-1070472 MS.gene85956:CDS 45.0%
GAACTAGCAGGAATTGCAGT+GGG + chr2.1:1071171-1071190 MS.gene85956:CDS 45.0%
GAGGAAATTCCATCAACACC+AGG + chr2.1:1070026-1070045 MS.gene85956:CDS 45.0%
GCAAAAGAAATGGTGACTGC+AGG - chr2.1:1070568-1070587 None:intergenic 45.0%
GCTTTGGTTACATGCTTCCA+CGG - chr2.1:1070607-1070626 None:intergenic 45.0%
GGGTTTAAGTCTGAGAGAAG+CGG + chr2.1:1070074-1070093 MS.gene85956:CDS 45.0%
GGTTTAAGTCTGAGAGAAGC+GGG + chr2.1:1070075-1070094 MS.gene85956:CDS 45.0%
GTGACTCCACCACTCATAAA+AGG - chr2.1:1070843-1070862 None:intergenic 45.0%
GTGCTGCATTTGCTCTCAAA+GGG + chr2.1:1070808-1070827 MS.gene85956:CDS 45.0%
GTTAATTGCTCTTCACGCGA+AGG - chr2.1:1071113-1071132 None:intergenic 45.0%
GTTCATGACAAGTGGGGATA+GGG - chr2.1:1071286-1071305 None:intergenic 45.0%
TAATTGCTCTTCACGCGAAG+GGG - chr2.1:1071111-1071130 None:intergenic 45.0%
TCCTGTGCCTCTTGCAAAAA+AGG + chr2.1:1070220-1070239 MS.gene85956:CDS 45.0%
TGCTGCATTTGCTCTCAAAG+GGG + chr2.1:1070809-1070828 MS.gene85956:CDS 45.0%
TGTGCTGCATTTGCTCTCAA+AGG + chr2.1:1070807-1070826 MS.gene85956:CDS 45.0%
TGTTCATGACAAGTGGGGAT+AGG - chr2.1:1071287-1071306 None:intergenic 45.0%
TTCATGACAAGTGGGGATAG+GGG - chr2.1:1071285-1071304 None:intergenic 45.0%
! ACTCCTGGTGTACCTCTTTT+TGG + chr2.1:1070050-1070069 MS.gene85956:CDS 45.0%
!! AATACTTGGAGCTCTAGGTG+GGG + chr2.1:1071430-1071449 MS.gene85956:CDS 45.0%
!! AATGCTTCGGTGTCCAAGAA+TGG + chr2.1:1070141-1070160 MS.gene85956:CDS 45.0%
!! CAATACTTGGAGCTCTAGGT+GGG + chr2.1:1071429-1071448 MS.gene85956:CDS 45.0%
!! CTGGTGTACCTCTTTTTGGT+GGG + chr2.1:1070054-1070073 MS.gene85956:CDS 45.0%
!!! ACCTTTTTTGCAAGAGGCAC+AGG - chr2.1:1070224-1070243 None:intergenic 45.0%
!!! TTTTTTGCAAGAGGCACAGG+AGG - chr2.1:1070221-1070240 None:intergenic 45.0%
AAGGCTCGGAGACTCTGATT+GGG + chr2.1:1070467-1070486 MS.gene85956:CDS 50.0%
AAGTCTGAGAGAAGCGGGAA+TGG + chr2.1:1070080-1070099 MS.gene85956:CDS 50.0%
AATGTTCGTTGTCACGGCAG+TGG + chr2.1:1070923-1070942 MS.gene85956:CDS 50.0%
ACCATATCCTCCGGAAGGAA+CGG - chr2.1:1070865-1070884 None:intergenic 50.0%
ATTGGGTGTGCTACCTCTAC+TGG + chr2.1:1070484-1070503 MS.gene85956:CDS 50.0%
CATAACCGCAAGACCAGTAG+AGG - chr2.1:1070500-1070519 None:intergenic 50.0%
CCACCTAGAGCTCCAAGTAT+TGG - chr2.1:1071431-1071450 None:intergenic 50.0%
GCTCCAATACTTGGAGCTCT+AGG + chr2.1:1071425-1071444 MS.gene85956:CDS 50.0%
GCTGGACCTAGAGTTCTTAC+TGG - chr2.1:1071362-1071381 None:intergenic 50.0%
GGAAGATGAAGCCGACATAG+GGG + chr2.1:1071038-1071057 MS.gene85956:intron 50.0%
TCATGACAAGTGGGGATAGG+GGG - chr2.1:1071284-1071303 None:intergenic 50.0%
TCGGCTCCTATCTGTAACAC+AGG - chr2.1:1070382-1070401 None:intergenic 50.0%
TGAGATGAGCACCAGAGATG+TGG - chr2.1:1070543-1070562 None:intergenic 50.0%
! CCACCAAAAAGAGGTACACC+AGG - chr2.1:1070056-1070075 None:intergenic 50.0%
! CCTGGTGTACCTCTTTTTGG+TGG + chr2.1:1070053-1070072 MS.gene85956:CDS 50.0%
!! CCAATACTTGGAGCTCTAGG+TGG + chr2.1:1071428-1071447 MS.gene85956:CDS 50.0%
!! TCTCCGAGCCTTGTGTCTTT+TGG - chr2.1:1070459-1070478 None:intergenic 50.0%
!! TGCTACCTCTACTGGTCTTG+CGG + chr2.1:1070492-1070511 MS.gene85956:CDS 50.0%
AAGTGGGGATAGGGGGAAGA+AGG - chr2.1:1071277-1071296 None:intergenic 55.0%
ACCGTTCCTTCCGGAGGATA+TGG + chr2.1:1070861-1070880 MS.gene85956:CDS 55.0%
ACTCACAGCTCTTGTGTCGG+TGG - chr2.1:1070949-1070968 None:intergenic 55.0%
AGGGGGTGGCATTAATGAGC+AGG - chr2.1:1070198-1070217 None:intergenic 55.0%
ATGAGCACCAGAGATGTGGC+CGG - chr2.1:1070539-1070558 None:intergenic 55.0%
CAAGGCTCGGAGACTCTGAT+TGG + chr2.1:1070466-1070485 MS.gene85956:CDS 55.0%
CTGCGTTGCAGGCCAATAAC+AGG + chr2.1:1071323-1071342 MS.gene85956:intron 55.0%
GCTTGACCATATCCTCCGGA+AGG - chr2.1:1070870-1070889 None:intergenic 55.0%
! ATGATGGTGCACTGCGTTGC+AGG + chr2.1:1071312-1071331 MS.gene85956:intron 55.0%
! CTGCATTGAAGCACTTCCCG+TGG + chr2.1:1070587-1070606 MS.gene85956:CDS 55.0%
! TTGCAAGAGGCACAGGAGGA+GGG - chr2.1:1070217-1070236 None:intergenic 55.0%
! TTTGCAAGAGGCACAGGAGG+AGG - chr2.1:1070218-1070237 None:intergenic 55.0%
CCATCAACACCAGGCACTCC+TGG + chr2.1:1070035-1070054 MS.gene85956:CDS 60.0%
GGTGGAGTCACCGTTCCTTC+CGG + chr2.1:1070852-1070871 MS.gene85956:CDS 60.0%
! TGCAAGAGGCACAGGAGGAG+GGG - chr2.1:1070216-1070235 None:intergenic 60.0%
!! AGAGGTACACCAGGAGTGCC+TGG - chr2.1:1070047-1070066 None:intergenic 60.0%
!! CCAGGAGTGCCTGGTGTTGA+TGG - chr2.1:1070038-1070057 None:intergenic 60.0%
AGCACCAGAGATGTGGCCGG+TGG - chr2.1:1070536-1070555 None:intergenic 65.0%
CAGAGATGTGGCCGGTGGAG+AGG - chr2.1:1070531-1070550 None:intergenic 65.0%
CTCTCCACCGGCCACATCTC+TGG + chr2.1:1070529-1070548 MS.gene85956:CDS 65.0%
GGAGTCACCGTTCCTTCCGG+AGG + chr2.1:1070855-1070874 MS.gene85956:CDS 65.0%
! GCAAGAGGCACAGGAGGAGG+GGG - chr2.1:1070215-1070234 None:intergenic 65.0%
!! CTTGGAGCTCTAGGTGGGGC+AGG + chr2.1:1071434-1071453 MS.gene85956:CDS 65.0%
! AGAGGCACAGGAGGAGGGGG+TGG - chr2.1:1070212-1070231 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 1070008 1071541 1070008 ID=MS.gene85956
chr2.1 mRNA 1070008 1071541 1070008 ID=MS.gene85956.t1;Parent=MS.gene85956
chr2.1 exon 1070008 1070241 1070008 ID=MS.gene85956.t1.exon1;Parent=MS.gene85956.t1
chr2.1 CDS 1070008 1070241 1070008 ID=cds.MS.gene85956.t1;Parent=MS.gene85956.t1
chr2.1 exon 1070391 1070615 1070391 ID=MS.gene85956.t1.exon2;Parent=MS.gene85956.t1
chr2.1 CDS 1070391 1070615 1070391 ID=cds.MS.gene85956.t1;Parent=MS.gene85956.t1
chr2.1 exon 1070768 1070962 1070768 ID=MS.gene85956.t1.exon3;Parent=MS.gene85956.t1
chr2.1 CDS 1070768 1070962 1070768 ID=cds.MS.gene85956.t1;Parent=MS.gene85956.t1
chr2.1 exon 1071165 1071226 1071165 ID=MS.gene85956.t1.exon4;Parent=MS.gene85956.t1
chr2.1 CDS 1071165 1071226 1071165 ID=cds.MS.gene85956.t1;Parent=MS.gene85956.t1
chr2.1 exon 1071334 1071541 1071334 ID=MS.gene85956.t1.exon5;Parent=MS.gene85956.t1
chr2.1 CDS 1071334 1071541 1071334 ID=cds.MS.gene85956.t1;Parent=MS.gene85956.t1
Gene Sequence

>MS.gene85956

ATGGAACATATTAATAATGAGGAAATTCCATCAACACCAGGCACTCCTGGTGTACCTCTTTTTGGTGGGTTTAAGTCTGAGAGAAGCGGGAATGGTAATAATAAATATAAGAAGTCCCTACTCAAGAATTGTAAATGCTTCGGTGTCCAAGAATGGAACTTAGAAGATGGAGCTCTACCCACAGTTACCTGCTCATTAATGCCACCCCCTCCTCCTGTGCCTCTTGCAAAAAAGGTATATATTACTTTTATTATTATATACATATAATACAACTCTGTATATTTATGTGTGTCTAATCTTTGGTCTAATGTGATCAATGTAGACCATATCATTGAAGTGCTAAGTAGTAGTAATTGATTAATCCAAAACTACCTGTGTTACAGATAGGAGCCGAGTTTATAGGGACATTGATTCTGATGTTTGCTGGGACAGCCACTGCTATTGTGAACCAAAAGACACAAGGCTCGGAGACTCTGATTGGGTGTGCTACCTCTACTGGTCTTGCGGTTATGATCATCATCCTCTCCACCGGCCACATCTCTGGTGCTCATCTCAACCCTGCAGTCACCATTTCTTTTGCTGCATTGAAGCACTTCCCGTGGAAGCATGTAACCAAAGCTTTTCCTTAATCCTTCAGCCTAATTTCCTAATTAAAGTTGTTGAAATTAACATGAATTAATTAAAGCTGTACTTAATTTGCATGTTTAATAAATTATAAGCATGCATGTGTGTAAATATAAAGTATAAATTATAATTGCAGGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCAATATGTGCTGCATTTGCTCTCAAAGGGGTTTTTCACCCTTTTATGAGTGGTGGAGTCACCGTTCCTTCCGGAGGATATGGTCAAGCTTTTGCTTTAGAATTCATTATCAGCTTTAATCTAATGTTCGTTGTCACGGCAGTGGCCACCGACACAAGAGCTGTGAGTATTTGTTCCTATAGTAACTTTTAGCTAATAAATACACAAACTCATTCAAGTTTGAAAAGAAAAAGAGAAGGAAGATGAAGCCGACATAGGGGATAATATCATCCAAATTAAAATTTGAACATATGCTTGGATGAAAAATCCCCTTCGCGTGAAGAGCAATTAACAGAGTCCCTAATTGATGTTTATGGTTATGTAGGTAGGAGAACTAGCAGGAATTGCAGTGGGAGCAACTGTGATGCTCAATATACTAATAGCAGGGTATGTCTATGTCCTAACTCTCACTTATCACTCTCAACATACTCTCTCCTTCTTCCCCCTATCCCCACTTGTCATGAACATATATATGATGGTGCACTGCGTTGCAGGCCAATAACAGGAGCGTCAATGAACCCAGTAAGAACTCTAGGTCCAGCTATAGCTGCAAATAACTACAAAGCCATATGGGTCTATCTCTTAGCTCCAATACTTGGAGCTCTAGGTGGGGCAGGAACTTATACTGCAGTCAAGCTTCCCGAAGAAGATGATAATGCAAAGACTAATGCTTCTTCAAATCACCCCAGCTTTAGAAGATGA
Protein sequence

>MS.gene85956.t1

MEHINNEEIPSTPGTPGVPLFGGFKSERSGNGNNKYKKSLLKNCKCFGVQEWNLEDGALPTVTCSLMPPPPPVPLAKKIGAEFIGTLILMFAGTATAIVNQKTQGSETLIGCATSTGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICAAFALKGVFHPFMSGGVTVPSGGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPITGASMNPVRTLGPAIAANNYKAIWVYLLAPILGALGGAGTYTAVKLPEEDDNAKTNASSNHPSFRR