Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66923.t1 | XP_004497988.1 | 98.1 | 154 | 2 | 1 | 112 | 265 | 260 | 412 | 3.70E-59 | 238.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66923.t1 | Q8W4K5 | 66.7 | 156 | 46 | 2 | 111 | 265 | 272 | 422 | 8.5e-44 | 178.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66923.t1 | A0A1S2Y1R8 | 98.1 | 154 | 2 | 1 | 112 | 265 | 260 | 412 | 2.7e-59 | 238.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene66923 | 0.819749 | 9.86E-53 | -1.69E-46 |
| MS.gene053331 | MS.gene66923 | 0.842252 | 2.90E-58 | -1.69E-46 |
| MS.gene053332 | MS.gene66923 | 0.838014 | 3.70E-57 | -1.69E-46 |
| MS.gene054473 | MS.gene66923 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene66923 | 0.806684 | 7.30E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene66923 | -0.818066 | 2.38E-52 | -1.69E-46 |
| MS.gene056589 | MS.gene66923 | 0.801732 | 7.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66923.t1 | MTR_1g041395 | 92.453 | 265 | 18 | 1 | 1 | 265 | 136 | 398 | 6.79e-103 | 307 |
| MS.gene66923.t1 | MTR_1g041395 | 92.453 | 265 | 18 | 1 | 1 | 265 | 137 | 399 | 7.63e-103 | 307 |
| MS.gene66923.t1 | MTR_1g041395 | 92.453 | 265 | 18 | 1 | 1 | 265 | 143 | 405 | 9.20e-103 | 307 |
| MS.gene66923.t1 | MTR_1g041395 | 92.453 | 265 | 18 | 1 | 1 | 265 | 6 | 268 | 1.22e-102 | 302 |
| MS.gene66923.t1 | MTR_1g102980 | 82.018 | 228 | 33 | 2 | 34 | 260 | 35 | 255 | 4.92e-81 | 247 |
| MS.gene66923.t1 | MTR_1g102980 | 82.456 | 228 | 32 | 2 | 34 | 260 | 160 | 380 | 2.04e-80 | 249 |
| MS.gene66923.t1 | MTR_7g095500 | 70.656 | 259 | 71 | 3 | 10 | 265 | 148 | 404 | 3.11e-80 | 253 |
| MS.gene66923.t1 | MTR_1g071450 | 71.648 | 261 | 66 | 4 | 10 | 265 | 157 | 414 | 2.05e-76 | 240 |
| MS.gene66923.t1 | MTR_4g039910 | 49.573 | 234 | 90 | 4 | 33 | 265 | 99 | 305 | 9.49e-43 | 149 |
| MS.gene66923.t1 | MTR_3g110182 | 50.215 | 233 | 88 | 4 | 33 | 264 | 139 | 344 | 3.33e-42 | 148 |
| MS.gene66923.t1 | MTR_3g110182 | 50.215 | 233 | 88 | 4 | 33 | 264 | 141 | 346 | 1.00e-41 | 148 |
| MS.gene66923.t1 | MTR_5g012870 | 37.500 | 240 | 110 | 4 | 35 | 265 | 113 | 321 | 4.11e-32 | 122 |
| MS.gene66923.t1 | MTR_4g129510 | 38.839 | 224 | 101 | 3 | 35 | 256 | 118 | 307 | 1.85e-12 | 67.0 |
| MS.gene66923.t1 | MTR_4g129510 | 38.739 | 222 | 104 | 3 | 35 | 256 | 87 | 276 | 2.03e-12 | 66.6 |
| MS.gene66923.t1 | MTR_4g129510 | 40.000 | 210 | 90 | 3 | 35 | 242 | 118 | 293 | 1.61e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66923.t1 | AT4G14740 | 74.427 | 262 | 60 | 3 | 9 | 265 | 147 | 406 | 2.24e-108 | 319 |
| MS.gene66923.t1 | AT4G14740 | 74.427 | 262 | 60 | 3 | 9 | 265 | 8 | 267 | 1.04e-107 | 315 |
| MS.gene66923.t1 | AT4G14740 | 74.427 | 262 | 60 | 3 | 9 | 265 | 147 | 406 | 7.39e-107 | 318 |
| MS.gene66923.t1 | AT4G14740 | 74.427 | 262 | 60 | 3 | 9 | 265 | 147 | 406 | 7.39e-107 | 318 |
| MS.gene66923.t1 | AT3G22810 | 74.419 | 258 | 56 | 3 | 15 | 265 | 147 | 401 | 3.69e-104 | 309 |
| MS.gene66923.t1 | AT3G22810 | 75.194 | 258 | 54 | 3 | 15 | 265 | 9 | 263 | 3.05e-103 | 303 |
| MS.gene66923.t1 | AT3G22810 | 75.194 | 258 | 54 | 3 | 15 | 265 | 147 | 401 | 7.38e-103 | 307 |
| MS.gene66923.t1 | AT5G43870 | 73.307 | 251 | 53 | 2 | 16 | 265 | 147 | 384 | 1.34e-93 | 281 |
| MS.gene66923.t1 | AT5G43870 | 73.307 | 251 | 53 | 2 | 16 | 265 | 147 | 384 | 5.44e-92 | 279 |
| MS.gene66923.t1 | AT3G63300 | 72.428 | 243 | 60 | 3 | 24 | 265 | 28 | 264 | 1.61e-72 | 226 |
| MS.gene66923.t1 | AT3G63300 | 72.428 | 243 | 60 | 3 | 24 | 265 | 186 | 422 | 9.60e-72 | 228 |
| MS.gene66923.t1 | AT4G16670 | 39.749 | 239 | 116 | 4 | 35 | 265 | 132 | 350 | 1.85e-32 | 122 |
| MS.gene66923.t1 | AT4G16670 | 39.749 | 239 | 116 | 4 | 35 | 265 | 132 | 350 | 5.77e-32 | 122 |
| MS.gene66923.t1 | AT4G17350 | 39.004 | 241 | 108 | 6 | 35 | 265 | 115 | 326 | 7.01e-30 | 116 |
| MS.gene66923.t1 | AT4G16670 | 35.448 | 268 | 116 | 5 | 35 | 265 | 132 | 379 | 2.05e-26 | 106 |
| MS.gene66923.t1 | AT5G47440 | 37.668 | 223 | 112 | 2 | 43 | 265 | 131 | 326 | 9.08e-26 | 105 |
| MS.gene66923.t1 | AT4G32780 | 46.781 | 233 | 97 | 3 | 33 | 265 | 149 | 354 | 5.48e-21 | 92.0 |
| MS.gene66923.t1 | AT4G32780 | 46.781 | 233 | 97 | 3 | 33 | 265 | 130 | 335 | 5.55e-21 | 91.7 |
| MS.gene66923.t1 | AT5G57770 | 39.035 | 228 | 106 | 5 | 35 | 259 | 128 | 325 | 5.70e-20 | 88.2 |
| MS.gene66923.t1 | AT5G57770 | 39.035 | 228 | 106 | 5 | 35 | 259 | 128 | 325 | 6.88e-20 | 88.6 |
Find 87 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATATTCCAAACTTCTTTA+AGG | 0.144092 | 1.3:-24549585 | None:intergenic |
| CATGCTGCAGTTTCGGTTGC+TGG | 0.221538 | 1.3:+24549021 | MS.gene66923:CDS |
| TGCACCTGAAGAAAATTTCT+TGG | 0.293086 | 1.3:+24549714 | MS.gene66923:CDS |
| AATATTCCAAACTTCTTTAA+GGG | 0.302087 | 1.3:-24549584 | None:intergenic |
| AATTCCTGTGGAGAAGAATT+TGG | 0.302301 | 1.3:+24549615 | MS.gene66923:CDS |
| GGAGAGGAAGGAAAAGAAAA+AGG | 0.308251 | 1.3:+24548969 | MS.gene66923:CDS |
| GCCGCAACTGCTGCTTCGTC+AGG | 0.322180 | 1.3:+24549072 | MS.gene66923:CDS |
| CAAGGGCCCTTAAAGAAGTT+TGG | 0.334393 | 1.3:+24549578 | MS.gene66923:CDS |
| GCCACCGGCGGTGGCGGAGG+CGG | 0.357360 | 1.3:+24548919 | MS.gene66923:CDS |
| TCAGCTCCATGCTGCAGTTT+CGG | 0.359795 | 1.3:+24549014 | MS.gene66923:CDS |
| GAGGGAAGACGGTGGGGAGG+TGG | 0.359935 | 1.3:+24548941 | MS.gene66923:CDS |
| GCCGTGAATGTGAGGTCTGC+CGG | 0.362149 | 1.3:+24549231 | MS.gene66923:CDS |
| TGTTGAGGCTGCTGAGGCTA+TGG | 0.367362 | 1.3:+24549170 | MS.gene66923:CDS |
| ACCGGCGGTGGCGGAGGCGG+AGG | 0.377516 | 1.3:+24548922 | MS.gene66923:CDS |
| GTCTCTGCCACCGGCGGTGG+CGG | 0.378739 | 1.3:+24548913 | MS.gene66923:CDS |
| AGCATGGAGCTGAGCATTGT+GGG | 0.402854 | 1.3:-24549004 | None:intergenic |
| TTCGCCACTGAAGCTACTAT+TGG | 0.406875 | 1.3:-24549689 | None:intergenic |
| GGTAGCGTCGGCTGCCACAT+TGG | 0.419914 | 1.3:+24549134 | MS.gene66923:CDS |
| GCACCTGAAGAAAATTTCTT+GGG | 0.433850 | 1.3:+24549715 | MS.gene66923:CDS |
| ATGGTAATGGTAATGGTGGT+GGG | 0.434293 | 1.3:+24549644 | MS.gene66923:CDS |
| GTTGAGGCTGCTGAGGCTAT+GGG | 0.435850 | 1.3:+24549171 | MS.gene66923:CDS |
| AATGGTAATGGTAATGGTGG+TGG | 0.445582 | 1.3:+24549643 | MS.gene66923:CDS |
| TGCTTTCAGGTGAACTCCAT+TGG | 0.445858 | 1.3:+24550376 | MS.gene66923:intron |
| TCTGCCACCGGCGGTGGCGG+AGG | 0.450077 | 1.3:+24548916 | MS.gene66923:CDS |
| GCGGAGGGAAGACGGTGGGG+AGG | 0.464521 | 1.3:+24548938 | MS.gene66923:CDS |
| CCCTCCGCCTCCGCCACCGC+CGG | 0.464687 | 1.3:-24548923 | None:intergenic |
| GAGGTGGCTGAAGGAGAGGA+AGG | 0.465983 | 1.3:+24548957 | MS.gene66923:CDS |
| CCGTGAATGTGAGGTCTGCC+GGG | 0.466362 | 1.3:+24549232 | MS.gene66923:CDS |
| TTTAAGAAGCTCACAACCTC+TGG | 0.469999 | 1.3:-24549761 | None:intergenic |
| GAGAAGAATTTGGTAGGTAA+TGG | 0.471793 | 1.3:+24549625 | MS.gene66923:CDS |
| CCGGCGGTGGCGGAGGCGGA+GGG | 0.476107 | 1.3:+24548923 | MS.gene66923:CDS |
| TGGCGGAGGCGGAGGGAAGA+CGG | 0.479655 | 1.3:+24548930 | MS.gene66923:CDS |
| TTGACGGCTGCTGCTGCGAC+AGG | 0.482568 | 1.3:+24549267 | MS.gene66923:CDS |
| ATGAAGAGTAGACATGTTGC+TGG | 0.483425 | 1.3:+24550698 | MS.gene66923:CDS |
| GTAGGTAATGGTAATGGTAA+TGG | 0.484250 | 1.3:+24549637 | MS.gene66923:CDS |
| TGAGCGTGATCACCTTGCTT+CGG | 0.492692 | 1.3:+24549197 | MS.gene66923:CDS |
| GAGGCGGAGGGAAGACGGTG+GGG | 0.498373 | 1.3:+24548935 | MS.gene66923:CDS |
| AGAGTCTCTGCCACCGGCGG+TGG | 0.498489 | 1.3:+24548910 | MS.gene66923:CDS |
| TTGAATTCGTAGCATTGCGT+GGG | 0.502451 | 1.3:+24549539 | MS.gene66923:intron |
| CCCGGCAGACCTCACATTCA+CGG | 0.504849 | 1.3:-24549232 | None:intergenic |
| TCCGCCTCCGCCACCGCCGG+TGG | 0.505322 | 1.3:-24548920 | None:intergenic |
| TTTGAATTCGTAGCATTGCG+TGG | 0.505388 | 1.3:+24549538 | MS.gene66923:intron |
| GCGTGGGGCTGCAACATTGA+AGG | 0.507167 | 1.3:+24549555 | MS.gene66923:CDS |
| CGGAGGCGGAGGGAAGACGG+TGG | 0.509388 | 1.3:+24548933 | MS.gene66923:CDS |
| TTGAGGCTGCTGAGGCTATG+GGG | 0.510751 | 1.3:+24549172 | MS.gene66923:CDS |
| TGGGGAGGTGGCTGAAGGAG+AGG | 0.513502 | 1.3:+24548953 | MS.gene66923:CDS |
| GACAGACATGGCGGTAGCGT+CGG | 0.513746 | 1.3:+24549122 | MS.gene66923:CDS |
| GACGGTGGGGAGGTGGCTGA+AGG | 0.519611 | 1.3:+24548948 | MS.gene66923:CDS |
| GGAGGCGGAGGGAAGACGGT+GGG | 0.523154 | 1.3:+24548934 | MS.gene66923:CDS |
| GTCGGCTGCCACATTGGTGG+CGG | 0.524542 | 1.3:+24549140 | MS.gene66923:CDS |
| CCTACCAAATTCTTCTCCAC+AGG | 0.525363 | 1.3:-24549619 | None:intergenic |
| CTTCTTAAACGCACTCGCAC+AGG | 0.525523 | 1.3:+24549775 | MS.gene66923:CDS |
| TGTTGTGATTGTTGCTTGAA+CGG | 0.529425 | 1.3:-24548852 | None:intergenic |
| GGGCTGCAACATTGAAGGCA+AGG | 0.533544 | 1.3:+24549560 | MS.gene66923:CDS |
| CGGGGATATTACAACGTTGA+CGG | 0.533765 | 1.3:+24549251 | MS.gene66923:CDS |
| TGAGGCTGCTGAGGCTATGG+GGG | 0.541052 | 1.3:+24549173 | MS.gene66923:CDS |
| AGCGTCGGCTGCCACATTGG+TGG | 0.546806 | 1.3:+24549137 | MS.gene66923:CDS |
| CAGCATGGAGCTGAGCATTG+TGG | 0.557047 | 1.3:-24549005 | None:intergenic |
| GGCTGCAATAGCCGCAACAG+CGG | 0.560843 | 1.3:-24549052 | None:intergenic |
| ACCTGACGAAGCAGCAGTTG+CGG | 0.576149 | 1.3:-24549073 | None:intergenic |
| GGTAATGGTAATGGTGGTGG+GGG | 0.586229 | 1.3:+24549646 | MS.gene66923:CDS |
| GGCTGCAACATTGAAGGCAA+GGG | 0.588562 | 1.3:+24549561 | MS.gene66923:CDS |
| TGCTCGTAAAGACGAGCAGA+TGG | 0.589082 | 1.3:+24549095 | MS.gene66923:CDS |
| CCTGTGGAGAAGAATTTGGT+AGG | 0.590190 | 1.3:+24549619 | MS.gene66923:CDS |
| AATTTGGTAGGTAATGGTAA+TGG | 0.595486 | 1.3:+24549631 | MS.gene66923:CDS |
| CGTCAACGTTGTAATATCCC+CGG | 0.596809 | 1.3:-24549250 | None:intergenic |
| TTAGCTCTGCCGTGAATGTG+AGG | 0.602071 | 1.3:+24549223 | MS.gene66923:CDS |
| CGGTGGCAGAGACTCTGTAA+TGG | 0.602908 | 1.3:-24548903 | None:intergenic |
| TACAGAGTCTCTGCCACCGG+CGG | 0.605030 | 1.3:+24548907 | MS.gene66923:CDS |
| CATTACAGAGTCTCTGCCAC+CGG | 0.605075 | 1.3:+24548904 | MS.gene66923:CDS |
| TGGAGTTGCAGCCGCTGTTG+CGG | 0.611144 | 1.3:+24549041 | MS.gene66923:CDS |
| TGGTAATGGTAATGGTGGTG+GGG | 0.612875 | 1.3:+24549645 | MS.gene66923:CDS |
| CAGAGCTAACGACCGAAGCA+AGG | 0.613746 | 1.3:-24549209 | None:intergenic |
| GGTAATGGTAATGGTAATGG+TGG | 0.614443 | 1.3:+24549640 | MS.gene66923:CDS |
| AGCTCCAATAGTAGCTTCAG+TGG | 0.618065 | 1.3:+24549685 | MS.gene66923:CDS |
| TCAATGTGTTGAGGCTGCTG+AGG | 0.620073 | 1.3:+24549164 | MS.gene66923:CDS |
| AGTAGAGAATTGCTTGCCAG+AGG | 0.621265 | 1.3:+24549745 | MS.gene66923:CDS |
| CAGCAACCGAAACTGCAGCA+TGG | 0.627948 | 1.3:-24549020 | None:intergenic |
| TGAAGAGTAGACATGTTGCT+GGG | 0.634135 | 1.3:+24550699 | MS.gene66923:CDS |
| TATTGCTGCTGTAATTCCTG+TGG | 0.643534 | 1.3:+24549603 | MS.gene66923:CDS |
| TTATATAAACAGAATGAACC+AGG | 0.647298 | 1.3:+24550413 | MS.gene66923:CDS |
| GCAGATGGCGAAGACAGACA+TGG | 0.655202 | 1.3:+24549110 | MS.gene66923:CDS |
| TGAATTCGTAGCATTGCGTG+GGG | 0.663115 | 1.3:+24549540 | MS.gene66923:intron |
| CGTGAATGTGAGGTCTGCCG+GGG | 0.682902 | 1.3:+24549233 | MS.gene66923:CDS |
| GGTGGCGGCTCAATGTGTTG+AGG | 0.700934 | 1.3:+24549155 | MS.gene66923:CDS |
| ACATTGAGCCGCCACCAATG+TGG | 0.704591 | 1.3:-24549148 | None:intergenic |
| GATGGCGAAGACAGACATGG+CGG | 0.768845 | 1.3:+24549113 | MS.gene66923:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGAAATGAAAAGAAA+AGG | - | chr1.3:24550460-24550479 | None:intergenic | 15.0% |
| !! | ATTAAAACTCTTATAATTGA+TGG | - | chr1.3:24550523-24550542 | None:intergenic | 15.0% |
| !! | CATGAAATTAATCATAAAAA+AGG | + | chr1.3:24549333-24549352 | MS.gene66923:intron | 15.0% |
| !!! | TATAGTTGTTGATTAATTTA+TGG | + | chr1.3:24549506-24549525 | MS.gene66923:intron | 15.0% |
| !!! | TTAAATTTTTGTTTTTCAGT+TGG | + | chr1.3:24550227-24550246 | MS.gene66923:intron | 15.0% |
| !! | AATATTCCAAACTTCTTTAA+GGG | - | chr1.3:24549587-24549606 | None:intergenic | 20.0% |
| !! | AATTCTCAAATATATATACC+TGG | - | chr1.3:24550434-24550453 | None:intergenic | 20.0% |
| !! | AGAAAGGAAAAAAAAAACAA+TGG | + | chr1.3:24549469-24549488 | MS.gene66923:intron | 20.0% |
| !! | TGTAAACAATCACAAATAAA+AGG | - | chr1.3:24549315-24549334 | None:intergenic | 20.0% |
| !!! | AAAAGCATAGAGTATATAAT+GGG | - | chr1.3:24550261-24550280 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTAAGTTATTAC+CGG | + | chr1.3:24550136-24550155 | MS.gene66923:intron | 20.0% |
| !!! | GTGTTTCTTTTTATGTTTAA+AGG | + | chr1.3:24550328-24550347 | MS.gene66923:intron | 20.0% |
| !!! | TCTAATTTGAAACTAGAATT+CGG | - | chr1.3:24549928-24549947 | None:intergenic | 20.0% |
| ! | AAGGAAAAAAAAAACAATGG+TGG | + | chr1.3:24549472-24549491 | MS.gene66923:intron | 25.0% |
| ! | ACTACAATTTGTAGATTTCT+AGG | - | chr1.3:24550638-24550657 | None:intergenic | 25.0% |
| ! | AGGCTAAAATTCAATTATAG+AGG | + | chr1.3:24549894-24549913 | MS.gene66923:intron | 25.0% |
| ! | ATGACAACATTGATAAATGT+TGG | - | chr1.3:24550092-24550111 | None:intergenic | 25.0% |
| ! | CAATATTCCAAACTTCTTTA+AGG | - | chr1.3:24549588-24549607 | None:intergenic | 25.0% |
| ! | CATAGACTTAAGTCTATAAT+TGG | - | chr1.3:24550032-24550051 | None:intergenic | 25.0% |
| ! | GGTAATAACTTAAGAAACAA+TGG | - | chr1.3:24550137-24550156 | None:intergenic | 25.0% |
| ! | TGATTAATTTATGGTGTTTG+TGG | + | chr1.3:24549515-24549534 | MS.gene66923:intron | 25.0% |
| ! | TTATATAAACAGAATGAACC+AGG | + | chr1.3:24550413-24550432 | MS.gene66923:CDS | 25.0% |
| !! | ATAATTGATGGCCAAATAAT+TGG | - | chr1.3:24550511-24550530 | None:intergenic | 25.0% |
| !! | CAAAAGCATAGAGTATATAA+TGG | - | chr1.3:24550262-24550281 | None:intergenic | 25.0% |
| !! | CTTCAAATTTAAAGTGTGTT+TGG | + | chr1.3:24550063-24550082 | MS.gene66923:intron | 25.0% |
| !! | CTTCTCAGTATATGTTTTAT+TGG | + | chr1.3:24550195-24550214 | MS.gene66923:intron | 25.0% |
| !! | TGACTGACTTAAATAAAGAA+AGG | + | chr1.3:24549453-24549472 | MS.gene66923:intron | 25.0% |
| !! | TTGATTTGATAATTGCTTTC+AGG | + | chr1.3:24550363-24550382 | MS.gene66923:intron | 25.0% |
| !! | TTGTATGTGGATTAAAGAAA+AGG | + | chr1.3:24550279-24550298 | MS.gene66923:intron | 25.0% |
| !!! | AAAGTTGATTTTGACATCTT+TGG | - | chr1.3:24549990-24550009 | None:intergenic | 25.0% |
| AAAAGAAAAAGGAGGAAACA+AGG | + | chr1.3:24548980-24548999 | MS.gene66923:CDS | 30.0% | |
| AAAGAAAAAGGAGGAAACAA+GGG | + | chr1.3:24548981-24549000 | MS.gene66923:CDS | 30.0% | |
| AAAGTGAACTGAATGTAAAG+TGG | + | chr1.3:24549843-24549862 | MS.gene66923:intron | 30.0% | |
| ATCAACTTTGCTTCTTTCAA+TGG | + | chr1.3:24550001-24550020 | MS.gene66923:intron | 30.0% | |
| CTTGACTATGACCAATTATT+TGG | + | chr1.3:24550497-24550516 | MS.gene66923:intron | 30.0% | |
| GAATGTAAAGTGGTTTAAAG+TGG | + | chr1.3:24549853-24549872 | MS.gene66923:intron | 30.0% | |
| GATGAATAAGAATCTGATAG+TGG | + | chr1.3:24550543-24550562 | MS.gene66923:intron | 30.0% | |
| ! | AAACTGACACAATTTTCCAA+TGG | - | chr1.3:24550395-24550414 | None:intergenic | 30.0% |
| ! | AATTTGGTAGGTAATGGTAA+TGG | + | chr1.3:24549631-24549650 | MS.gene66923:CDS | 30.0% |
| ! | ATACTCTATGCTTTTGTATG+TGG | + | chr1.3:24550266-24550285 | MS.gene66923:intron | 30.0% |
| ! | ATTAGCATTTTCAGTCTCAT+TGG | + | chr1.3:24549400-24549419 | MS.gene66923:intron | 30.0% |
| ! | TAAAGTGGTTTAAAGTGGTT+TGG | + | chr1.3:24549858-24549877 | MS.gene66923:intron | 30.0% |
| !! | TTAGATCCTCTTTTTGTTTC+AGG | + | chr1.3:24550664-24550683 | MS.gene66923:intron | 30.0% |
| AACTTTGCTTCTTTCAATGG+TGG | + | chr1.3:24550004-24550023 | MS.gene66923:intron | 35.0% | |
| AATTCCTGTGGAGAAGAATT+TGG | + | chr1.3:24549615-24549634 | MS.gene66923:CDS | 35.0% | |
| GAAAGAAGTGACTAAAGTGA+GGG | + | chr1.3:24550565-24550584 | MS.gene66923:intron | 35.0% | |
| GAGAAGAATTTGGTAGGTAA+TGG | + | chr1.3:24549625-24549644 | MS.gene66923:CDS | 35.0% | |
| GCACCTGAAGAAAATTTCTT+GGG | + | chr1.3:24549715-24549734 | MS.gene66923:CDS | 35.0% | |
| GCATAACCTGAAACAAAAAG+AGG | - | chr1.3:24550673-24550692 | None:intergenic | 35.0% | |
| TGCACCTGAAGAAAATTTCT+TGG | + | chr1.3:24549714-24549733 | MS.gene66923:CDS | 35.0% | |
| TTTCAGTCTCATTGGAATGT+TGG | + | chr1.3:24549408-24549427 | MS.gene66923:intron | 35.0% | |
| ! | AGAACGATGTGATGATGTTA+AGG | + | chr1.3:24550593-24550612 | MS.gene66923:intron | 35.0% |
| ! | ATGCCCAAGAAATTTTCTTC+AGG | - | chr1.3:24549721-24549740 | None:intergenic | 35.0% |
| ! | GAACGATGTGATGATGTTAA+GGG | + | chr1.3:24550594-24550613 | MS.gene66923:intron | 35.0% |
| ! | TGTTGTGATTGTTGCTTGAA+CGG | - | chr1.3:24548855-24548874 | None:intergenic | 35.0% |
| !! | GTAGGTAATGGTAATGGTAA+TGG | + | chr1.3:24549637-24549656 | MS.gene66923:CDS | 35.0% |
| ATGAAGAGTAGACATGTTGC+TGG | + | chr1.3:24550698-24550717 | MS.gene66923:CDS | 40.0% | |
| GAGGAAGGAAAAGAAAAAGG+AGG | + | chr1.3:24548972-24548991 | MS.gene66923:CDS | 40.0% | |
| GGAAAGAAGTGACTAAAGTG+AGG | + | chr1.3:24550564-24550583 | MS.gene66923:intron | 40.0% | |
| GGAGAGGAAGGAAAAGAAAA+AGG | + | chr1.3:24548969-24548988 | MS.gene66923:CDS | 40.0% | |
| TATTGCTGCTGTAATTCCTG+TGG | + | chr1.3:24549603-24549622 | MS.gene66923:CDS | 40.0% | |
| TGAAGAGTAGACATGTTGCT+GGG | + | chr1.3:24550699-24550718 | MS.gene66923:CDS | 40.0% | |
| TTACGTCTGAGTGTCATGTT+CGG | + | chr1.3:24550162-24550181 | MS.gene66923:intron | 40.0% | |
| TTGAATTCGTAGCATTGCGT+GGG | + | chr1.3:24549539-24549558 | MS.gene66923:intron | 40.0% | |
| TTTAAGAAGCTCACAACCTC+TGG | - | chr1.3:24549764-24549783 | None:intergenic | 40.0% | |
| TTTGAATTCGTAGCATTGCG+TGG | + | chr1.3:24549538-24549557 | MS.gene66923:intron | 40.0% | |
| !! | AATGGTAATGGTAATGGTGG+TGG | + | chr1.3:24549643-24549662 | MS.gene66923:CDS | 40.0% |
| !! | ATGGTAATGGTAATGGTGGT+GGG | + | chr1.3:24549644-24549663 | MS.gene66923:CDS | 40.0% |
| !! | GGTAATGGTAATGGTAATGG+TGG | + | chr1.3:24549640-24549659 | MS.gene66923:CDS | 40.0% |
| AGCTCCAATAGTAGCTTCAG+TGG | + | chr1.3:24549685-24549704 | MS.gene66923:CDS | 45.0% | |
| AGTAGAGAATTGCTTGCCAG+AGG | + | chr1.3:24549745-24549764 | MS.gene66923:CDS | 45.0% | |
| CAAGGGCCCTTAAAGAAGTT+TGG | + | chr1.3:24549578-24549597 | MS.gene66923:CDS | 45.0% | |
| CCTACCAAATTCTTCTCCAC+AGG | - | chr1.3:24549622-24549641 | None:intergenic | 45.0% | |
| CCTGTGGAGAAGAATTTGGT+AGG | + | chr1.3:24549619-24549638 | MS.gene66923:CDS | 45.0% | |
| CGGGGATATTACAACGTTGA+CGG | + | chr1.3:24549251-24549270 | MS.gene66923:CDS | 45.0% | |
| CGTCAACGTTGTAATATCCC+CGG | - | chr1.3:24549253-24549272 | None:intergenic | 45.0% | |
| GGTTTGGATCGCTAAACACA+AGG | + | chr1.3:24549874-24549893 | MS.gene66923:intron | 45.0% | |
| TGAATTCGTAGCATTGCGTG+GGG | + | chr1.3:24549540-24549559 | MS.gene66923:intron | 45.0% | |
| TGACACTCAGACGTAAACAC+CGG | - | chr1.3:24550158-24550177 | None:intergenic | 45.0% | |
| TTCGCCACTGAAGCTACTAT+TGG | - | chr1.3:24549692-24549711 | None:intergenic | 45.0% | |
| ! | TGCTTTCAGGTGAACTCCAT+TGG | + | chr1.3:24550376-24550395 | MS.gene66923:intron | 45.0% |
| !! | TGGTAATGGTAATGGTGGTG+GGG | + | chr1.3:24549645-24549664 | MS.gene66923:CDS | 45.0% |
| CATTACAGAGTCTCTGCCAC+CGG | + | chr1.3:24548904-24548923 | MS.gene66923:CDS | 50.0% | |
| CTTCTTAAACGCACTCGCAC+AGG | + | chr1.3:24549775-24549794 | MS.gene66923:CDS | 50.0% | |
| GGCTGCAACATTGAAGGCAA+GGG | + | chr1.3:24549561-24549580 | MS.gene66923:CDS | 50.0% | |
| TCAATGTGTTGAGGCTGCTG+AGG | + | chr1.3:24549164-24549183 | MS.gene66923:CDS | 50.0% | |
| TCAGCTCCATGCTGCAGTTT+CGG | + | chr1.3:24549014-24549033 | MS.gene66923:CDS | 50.0% | |
| TGAGCGTGATCACCTTGCTT+CGG | + | chr1.3:24549197-24549216 | MS.gene66923:CDS | 50.0% | |
| TGCTCGTAAAGACGAGCAGA+TGG | + | chr1.3:24549095-24549114 | MS.gene66923:CDS | 50.0% | |
| ! | AGCATGGAGCTGAGCATTGT+GGG | - | chr1.3:24549007-24549026 | None:intergenic | 50.0% |
| !! | GGTAATGGTAATGGTGGTGG+GGG | + | chr1.3:24549646-24549665 | MS.gene66923:CDS | 50.0% |
| !! | TTAGCTCTGCCGTGAATGTG+AGG | + | chr1.3:24549223-24549242 | MS.gene66923:CDS | 50.0% |
| ACATTGAGCCGCCACCAATG+TGG | - | chr1.3:24549151-24549170 | None:intergenic | 55.0% | |
| ACCTGACGAAGCAGCAGTTG+CGG | - | chr1.3:24549076-24549095 | None:intergenic | 55.0% | |
| CAGAGCTAACGACCGAAGCA+AGG | - | chr1.3:24549212-24549231 | None:intergenic | 55.0% | |
| CAGCAACCGAAACTGCAGCA+TGG | - | chr1.3:24549023-24549042 | None:intergenic | 55.0% | |
| CATGCTGCAGTTTCGGTTGC+TGG | + | chr1.3:24549021-24549040 | MS.gene66923:CDS | 55.0% | |
| CGGTGGCAGAGACTCTGTAA+TGG | - | chr1.3:24548906-24548925 | None:intergenic | 55.0% | |
| GATGGCGAAGACAGACATGG+CGG | + | chr1.3:24549113-24549132 | MS.gene66923:CDS | 55.0% | |
| GCAGATGGCGAAGACAGACA+TGG | + | chr1.3:24549110-24549129 | MS.gene66923:CDS | 55.0% | |
| GGGCTGCAACATTGAAGGCA+AGG | + | chr1.3:24549560-24549579 | MS.gene66923:CDS | 55.0% | |
| GTTGAGGCTGCTGAGGCTAT+GGG | + | chr1.3:24549171-24549190 | MS.gene66923:CDS | 55.0% | |
| TGTTGAGGCTGCTGAGGCTA+TGG | + | chr1.3:24549170-24549189 | MS.gene66923:CDS | 55.0% | |
| TTGAGGCTGCTGAGGCTATG+GGG | + | chr1.3:24549172-24549191 | MS.gene66923:CDS | 55.0% | |
| ! | CAGCATGGAGCTGAGCATTG+TGG | - | chr1.3:24549008-24549027 | None:intergenic | 55.0% |
| CCCGGCAGACCTCACATTCA+CGG | - | chr1.3:24549235-24549254 | None:intergenic | 60.0% | |
| CCGTGAATGTGAGGTCTGCC+GGG | + | chr1.3:24549232-24549251 | MS.gene66923:CDS | 60.0% | |
| CGTGAATGTGAGGTCTGCCG+GGG | + | chr1.3:24549233-24549252 | MS.gene66923:CDS | 60.0% | |
| CTGCTGCTGCGACAGGTATG+CGG | + | chr1.3:24549274-24549293 | MS.gene66923:intron | 60.0% | |
| GACAGACATGGCGGTAGCGT+CGG | + | chr1.3:24549122-24549141 | MS.gene66923:CDS | 60.0% | |
| GAGGTGGCTGAAGGAGAGGA+AGG | + | chr1.3:24548957-24548976 | MS.gene66923:CDS | 60.0% | |
| GCCGTGAATGTGAGGTCTGC+CGG | + | chr1.3:24549231-24549250 | MS.gene66923:CDS | 60.0% | |
| GCGTGGGGCTGCAACATTGA+AGG | + | chr1.3:24549555-24549574 | MS.gene66923:CDS | 60.0% | |
| GGCTGCAATAGCCGCAACAG+CGG | - | chr1.3:24549055-24549074 | None:intergenic | 60.0% | |
| GGTGGGGGCAGTGGTAGTAA+TGG | + | chr1.3:24549661-24549680 | MS.gene66923:CDS | 60.0% | |
| TACAGAGTCTCTGCCACCGG+CGG | + | chr1.3:24548907-24548926 | MS.gene66923:CDS | 60.0% | |
| TGAGGCTGCTGAGGCTATGG+GGG | + | chr1.3:24549173-24549192 | MS.gene66923:CDS | 60.0% | |
| TGGAGTTGCAGCCGCTGTTG+CGG | + | chr1.3:24549041-24549060 | MS.gene66923:CDS | 60.0% | |
| ! | GGTGGCGGCTCAATGTGTTG+AGG | + | chr1.3:24549155-24549174 | MS.gene66923:CDS | 60.0% |
| GTCGGCTGCCACATTGGTGG+CGG | + | chr1.3:24549140-24549159 | MS.gene66923:CDS | 65.0% | |
| TGGGGAGGTGGCTGAAGGAG+AGG | + | chr1.3:24548953-24548972 | MS.gene66923:CDS | 65.0% | |
| TTGACGGCTGCTGCTGCGAC+AGG | + | chr1.3:24549267-24549286 | MS.gene66923:CDS | 65.0% | |
| ! | GCCGCAACTGCTGCTTCGTC+AGG | + | chr1.3:24549072-24549091 | MS.gene66923:CDS | 65.0% |
| !! | AGCGTCGGCTGCCACATTGG+TGG | + | chr1.3:24549137-24549156 | MS.gene66923:CDS | 65.0% |
| !! | GGTAATGGTGGTGGGGGCAG+TGG | + | chr1.3:24549652-24549671 | MS.gene66923:CDS | 65.0% |
| !! | GGTAGCGTCGGCTGCCACAT+TGG | + | chr1.3:24549134-24549153 | MS.gene66923:CDS | 65.0% |
| AGAGTCTCTGCCACCGGCGG+TGG | + | chr1.3:24548910-24548929 | MS.gene66923:CDS | 70.0% | |
| GACGGTGGGGAGGTGGCTGA+AGG | + | chr1.3:24548948-24548967 | MS.gene66923:CDS | 70.0% | |
| GAGGCGGAGGGAAGACGGTG+GGG | + | chr1.3:24548935-24548954 | MS.gene66923:CDS | 70.0% | |
| GAGGGAAGACGGTGGGGAGG+TGG | + | chr1.3:24548941-24548960 | MS.gene66923:CDS | 70.0% | |
| GGAGGCGGAGGGAAGACGGT+GGG | + | chr1.3:24548934-24548953 | MS.gene66923:CDS | 70.0% | |
| TGGCGGAGGCGGAGGGAAGA+CGG | + | chr1.3:24548930-24548949 | MS.gene66923:CDS | 70.0% | |
| CGGAGGCGGAGGGAAGACGG+TGG | + | chr1.3:24548933-24548952 | MS.gene66923:CDS | 75.0% | |
| GCGGAGGGAAGACGGTGGGG+AGG | + | chr1.3:24548938-24548957 | MS.gene66923:CDS | 75.0% | |
| GTCTCTGCCACCGGCGGTGG+CGG | + | chr1.3:24548913-24548932 | MS.gene66923:CDS | 75.0% | |
| !! | TCTGCCACCGGCGGTGGCGG+AGG | + | chr1.3:24548916-24548935 | MS.gene66923:CDS | 80.0% |
| ! | CCCTCCGCCTCCGCCACCGC+CGG | - | chr1.3:24548926-24548945 | None:intergenic | 85.0% |
| ! | TCCGCCTCCGCCACCGCCGG+TGG | - | chr1.3:24548923-24548942 | None:intergenic | 85.0% |
| !!! | ACCGGCGGTGGCGGAGGCGG+AGG | + | chr1.3:24548922-24548941 | MS.gene66923:CDS | 85.0% |
| !!! | CCGGCGGTGGCGGAGGCGGA+GGG | + | chr1.3:24548923-24548942 | MS.gene66923:CDS | 85.0% |
| !!! | GCCACCGGCGGTGGCGGAGG+CGG | + | chr1.3:24548919-24548938 | MS.gene66923:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 24548847 | 24550743 | 24548847 | ID=MS.gene66923 |
| chr1.3 | mRNA | 24548847 | 24550743 | 24548847 | ID=MS.gene66923.t1;Parent=MS.gene66923 |
| chr1.3 | exon | 24548847 | 24549288 | 24548847 | ID=MS.gene66923.t1.exon1;Parent=MS.gene66923.t1 |
| chr1.3 | CDS | 24548847 | 24549288 | 24548847 | ID=cds.MS.gene66923.t1;Parent=MS.gene66923.t1 |
| chr1.3 | exon | 24549551 | 24549796 | 24549551 | ID=MS.gene66923.t1.exon2;Parent=MS.gene66923.t1 |
| chr1.3 | CDS | 24549551 | 24549796 | 24549551 | ID=cds.MS.gene66923.t1;Parent=MS.gene66923.t1 |
| chr1.3 | exon | 24550385 | 24550434 | 24550385 | ID=MS.gene66923.t1.exon3;Parent=MS.gene66923.t1 |
| chr1.3 | CDS | 24550385 | 24550434 | 24550385 | ID=cds.MS.gene66923.t1;Parent=MS.gene66923.t1 |
| chr1.3 | exon | 24550686 | 24550743 | 24550686 | ID=MS.gene66923.t1.exon4;Parent=MS.gene66923.t1 |
| chr1.3 | CDS | 24550686 | 24550743 | 24550686 | ID=cds.MS.gene66923.t1;Parent=MS.gene66923.t1 |
| Gene Sequence |
| Protein sequence |
