AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99894


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99894.t1 MTR_3g072600 97.727 220 2 1 1 220 1 217 1.05e-159 440
MS.gene99894.t1 MTR_5g058140 77.895 190 37 2 32 220 27 212 1.47e-104 300
MS.gene99894.t1 MTR_8g088940 67.453 212 63 4 12 220 3 211 4.19e-94 274
MS.gene99894.t1 MTR_2g007210 63.158 209 69 3 13 220 5 206 1.76e-92 270
MS.gene99894.t1 MTR_8g088980 74.306 144 35 1 79 220 19 162 1.03e-76 228
MS.gene99894.t1 MTR_4g082315 44.330 194 103 3 31 220 24 216 1.17e-57 182
MS.gene99894.t1 MTR_6g012770 44.809 183 95 3 43 220 31 212 4.85e-55 175
MS.gene99894.t1 MTR_7g011490 35.577 208 129 3 17 220 6 212 2.34e-46 152
MS.gene99894.t1 MTR_5g042260 34.081 223 135 5 4 220 3 219 4.61e-43 144
MS.gene99894.t1 MTR_5g042320 38.798 183 104 5 44 220 43 223 3.27e-33 119
MS.gene99894.t1 MTR_5g042270 33.520 179 113 3 44 220 11 185 1.66e-28 106
MS.gene99894.t1 MTR_5g042320 39.130 138 76 5 44 175 43 178 6.70e-22 89.4
MS.gene99894.t1 MTR_7g095690 27.363 201 139 4 20 216 7 204 6.82e-16 73.6
MS.gene99894.t1 MTR_1g102720 25.137 183 132 3 36 216 27 206 3.46e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99894.t1 AT1G09580 63.415 205 71 2 18 220 15 217 6.22e-97 281
MS.gene99894.t1 AT1G57620 58.108 222 81 4 1 220 1 212 4.94e-91 266
MS.gene99894.t1 AT1G21900 63.462 208 72 3 16 220 10 216 1.40e-90 265
MS.gene99894.t1 AT3G10780 53.535 198 86 3 28 220 21 217 1.39e-67 207
MS.gene99894.t1 AT1G26690 40.385 208 115 4 17 220 12 214 4.30e-54 172
MS.gene99894.t1 AT1G14010 39.713 209 119 4 16 220 7 212 7.11e-52 167
MS.gene99894.t1 AT2G03290 41.327 196 111 2 29 220 18 213 1.12e-51 166
MS.gene99894.t1 AT1G69460 41.117 197 109 4 29 220 20 214 2.39e-51 166
MS.gene99894.t1 AT3G29070 38.860 193 113 3 32 220 34 225 5.14e-45 150
MS.gene99894.t1 AT2G03040 38.926 149 87 2 29 173 18 166 6.19e-34 119
MS.gene99894.t1 AT3G22845 26.230 183 130 3 36 216 28 207 3.80e-14 68.9

Find 51 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGACTCTGTTGCTAAAA+AGG 0.253132 3.2:-65395925 MS.gene99894:CDS
ATCGGCAACAACATAGTAAT+TGG 0.296460 3.2:+65397246 None:intergenic
GTCTCTTGGCGTATGCGTTT+CGG 0.305564 3.2:-65395106 MS.gene99894:CDS
GTAGCTATGTGGCATGCTTT+TGG 0.326986 3.2:-65396016 MS.gene99894:CDS
AGCAACAGAGTCCCAATCTT+TGG 0.327971 3.2:+65395932 None:intergenic
ATCTGTTATATTTAAAGAAC+AGG 0.333875 3.2:-65395723 MS.gene99894:intron
ATTAGTCTTGAATGGAAAAC+TGG 0.334614 3.2:-65395963 MS.gene99894:CDS
ACAATTCGTGTTCCTGAACT+TGG 0.360761 3.2:+65397400 None:intergenic
CTGGAATCTCTGCCAAAGAT+TGG 0.361290 3.2:-65395944 MS.gene99894:CDS
TGGTTAAGTATCCCCAGTTC+AGG 0.366565 3.2:-65397316 MS.gene99894:CDS
GTTCTTCAATTAGTCTTGAA+TGG 0.366713 3.2:-65395971 MS.gene99894:CDS
CTAAAACGACAACATGTGTT+TGG 0.367209 3.2:+65397269 None:intergenic
AACCAAATGGCCTTGGTTTG+AGG 0.382119 3.2:+65397334 None:intergenic
ACCAAATGGCCTTGGTTTGA+GGG 0.400461 3.2:+65397335 None:intergenic
AAAGGCTTCAACCCAAGTTC+AGG 0.405800 3.2:-65397412 MS.gene99894:CDS
TCCCTCAAACCAAGGCCATT+TGG 0.405823 3.2:-65397336 MS.gene99894:CDS
TTGTGAAGATTATTTCCATA+TGG 0.419312 3.2:+65396089 None:intergenic
TGTATCTGAGACGCTACTTT+CGG 0.424544 3.2:-65395065 MS.gene99894:CDS
GATACTTAACCAAATGGCCT+TGG 0.444311 3.2:+65397327 None:intergenic
CAACCATCGGTTATGGCAAA+AGG 0.447602 3.2:-65397430 None:intergenic
TGGAATCTCTGCCAAAGATT+GGG 0.449888 3.2:-65395943 MS.gene99894:CDS
CACGCACTTAGTTCCTGAAC+TGG 0.458031 3.2:+65397303 None:intergenic
TGTTGTTGCCGATAATATCC+AGG 0.467878 3.2:-65397236 MS.gene99894:CDS
TGTAAATGCAAATTGACCTT+GGG 0.478123 3.2:+65396052 None:intergenic
CTTGAGCTAAGGAAACTTGA+TGG 0.478866 3.2:-65395769 MS.gene99894:CDS
CATACCTTAGCAGAAATAGT+AGG 0.479188 3.2:+65397202 None:intergenic
AGGAACTAAGTGCGTGTCGC+AGG 0.493989 3.2:-65397296 MS.gene99894:CDS
CCCCAGGTGACATCTCCATA+TGG 0.495395 3.2:-65396104 MS.gene99894:intron
TTAAATATAACAGATTCTCA+TGG 0.503411 3.2:+65395731 None:intergenic
TTGTAAATGCAAATTGACCT+TGG 0.510774 3.2:+65396051 None:intergenic
GAAGTAAGCGAAGCAACAAA+TGG 0.515284 3.2:-65395153 MS.gene99894:CDS
TCAATTTGCATTTACAACTA+CGG 0.519360 3.2:-65396045 MS.gene99894:CDS
TAGTAGGAAGTGGGTGACCC+TGG 0.521407 3.2:+65397218 None:intergenic
TGGGTGACCCTGGATATTAT+CGG 0.530206 3.2:+65397228 None:intergenic
CAATTCGTGTTCCTGAACTT+GGG 0.533317 3.2:+65397401 None:intergenic
ACTTCCTACTATTTCTGCTA+AGG 0.538663 3.2:-65397206 MS.gene99894:intron
ACGCACTTAGTTCCTGAACT+GGG 0.540090 3.2:+65397304 None:intergenic
ACTGGGGATACTTAACCAAA+TGG 0.541125 3.2:+65397321 None:intergenic
TGGTTCAGTATAATGTCTCT+TGG 0.541189 3.2:-65395120 MS.gene99894:CDS
AGGGTGTTGAACTTGAGCTA+AGG 0.542132 3.2:-65395780 MS.gene99894:CDS
ATATAACAGATTCTCATGGA+TGG 0.555960 3.2:+65395735 None:intergenic
TTAGCAGAAATAGTAGGAAG+TGG 0.568794 3.2:+65397208 None:intergenic
AACAATGAAAATGTTACCCA+AGG 0.597853 3.2:-65396068 MS.gene99894:CDS
TATTAATCTCCCTCAAACCA+AGG 0.612415 3.2:-65397344 MS.gene99894:CDS
GCATTTACAACTACGGAGAG+TGG 0.623113 3.2:-65396038 MS.gene99894:CDS
TACGGAGAGTGGTAGCTATG+TGG 0.633734 3.2:-65396027 MS.gene99894:CDS
TTGAGGGAGATTAATAAGCG+AGG 0.637007 3.2:+65397351 None:intergenic
TAGCAGAAATAGTAGGAAGT+GGG 0.638507 3.2:+65397209 None:intergenic
GTTGTTGCCGATAATATCCA+GGG 0.640526 3.2:-65397235 MS.gene99894:CDS
CAACAAATGGCAGAGTTGCG+TGG 0.644187 3.2:-65395140 MS.gene99894:CDS
CGCACTTAGTTCCTGAACTG+GGG 0.674873 3.2:+65397305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAATAGATATAATATATT+AGG - chr3.2:65395723-65395742 MS.gene99894:intron 10.0%
!! AAATTTATTCAAAGAAAGTT+AGG - chr3.2:65397138-65397157 MS.gene99894:intron 15.0%
!! AATTTATTCAAAGAAAGTTA+GGG - chr3.2:65397139-65397158 MS.gene99894:intron 15.0%
!!! AAAAGTTCAAAACAATTTTA+TGG + chr3.2:65396904-65396923 None:intergenic 15.0%
!!! ATGCTTTATTATTTTTTTCT+TGG - chr3.2:65395283-65395302 MS.gene99894:intron 15.0%
!!! TTTTCATAAACTATATTAGA+TGG + chr3.2:65396934-65396953 None:intergenic 15.0%
!! AAAAAAAACTACTACATTAG+TGG + chr3.2:65395842-65395861 None:intergenic 20.0%
!! AAACTTAATGGTGTAAAATA+AGG - chr3.2:65395542-65395561 MS.gene99894:intron 20.0%
!! AATTAAGATGTTTATCCAAA+TGG - chr3.2:65397060-65397079 MS.gene99894:intron 20.0%
!! AATTCATATGAGTTAAACTA+AGG - chr3.2:65395793-65395812 MS.gene99894:intron 20.0%
!! ATCTGTTATATTTAAAGAAC+AGG - chr3.2:65396742-65396761 MS.gene99894:intron 20.0%
!! ATTAAGATGTTTATCCAAAT+GGG - chr3.2:65397061-65397080 MS.gene99894:intron 20.0%
!! CTATAACAAAAGATGAAATA+AGG + chr3.2:65396987-65397006 None:intergenic 20.0%
!! TAACTCAACTAATACATTTA+TGG - chr3.2:65396095-65396114 MS.gene99894:CDS 20.0%
!! TTAAATATAACAGATTCTCA+TGG + chr3.2:65396737-65396756 None:intergenic 20.0%
!!! AATACATTTATGGTTTGTTT+GGG - chr3.2:65396105-65396124 MS.gene99894:intron 20.0%
!!! ATTTAAAGTTTCTTCAACTT+AGG - chr3.2:65395392-65395411 MS.gene99894:intron 20.0%
!!! ATTTTTTTTGCACATTGTAT+AGG - chr3.2:65397274-65397293 MS.gene99894:CDS 20.0%
!!! GGATTATAAATTTGTTTATG+AGG - chr3.2:65395413-65395432 MS.gene99894:intron 20.0%
!!! TAATACATTTATGGTTTGTT+TGG - chr3.2:65396104-65396123 MS.gene99894:intron 20.0%
!!! TGAGATCTTTTTATTAAGTT+GGG - chr3.2:65397109-65397128 MS.gene99894:intron 20.0%
!!! TTTGATCTTTATGCTTTATT+TGG - chr3.2:65395343-65395362 MS.gene99894:intron 20.0%
!!! TTTTTTTTGCACATTGTATA+GGG - chr3.2:65397275-65397294 MS.gene99894:CDS 20.0%
! AATATGTGGTTAATTACATC+CGG - chr3.2:65395694-65395713 MS.gene99894:intron 25.0%
! ACAACACATGTAAGAAAATT+CGG + chr3.2:65395974-65395993 None:intergenic 25.0%
! ACCATTAAGTTTAAAGAACA+AGG + chr3.2:65395534-65395553 None:intergenic 25.0%
! ATCCCATATAGATATTACAA+AGG + chr3.2:65396611-65396630 None:intergenic 25.0%
! ATTCAACGTCAATACAAATT+TGG + chr3.2:65395460-65395479 None:intergenic 25.0%
! ATTTGTTTATGAGGCTAATA+GGG - chr3.2:65395422-65395441 MS.gene99894:intron 25.0%
! GAAAATAGCTTATAGCTAAT+AGG - chr3.2:65396949-65396968 MS.gene99894:intron 25.0%
! TAAAGAACAAGGATGAAATT+TGG + chr3.2:65395523-65395542 None:intergenic 25.0%
! TCAATTTGCATTTACAACTA+CGG - chr3.2:65396420-65396439 MS.gene99894:intron 25.0%
! TCCTTGTTCTTTAAACTTAA+TGG - chr3.2:65395530-65395549 MS.gene99894:intron 25.0%
! TGCCTTTGTAATATCTATAT+GGG - chr3.2:65396606-65396625 MS.gene99894:intron 25.0%
! TTAAGATGTTTATCCAAATG+GGG - chr3.2:65397062-65397081 MS.gene99894:intron 25.0%
! TTGCAAAAGTTGTCTAAATT+TGG + chr3.2:65395638-65395657 None:intergenic 25.0%
! TTGCCTTTGTAATATCTATA+TGG - chr3.2:65396605-65396624 MS.gene99894:intron 25.0%
! TTGTGAAGATTATTTCCATA+TGG + chr3.2:65396379-65396398 None:intergenic 25.0%
!! AATTTGTTTATGAGGCTAAT+AGG - chr3.2:65395421-65395440 MS.gene99894:intron 25.0%
!! CTGAGATCTTTTTATTAAGT+TGG - chr3.2:65397108-65397127 MS.gene99894:intron 25.0%
!! GTTTAATGACATAATCGTTT+TGG - chr3.2:65396651-65396670 MS.gene99894:intron 25.0%
!!! GATGTTTGATTTCAGTTTTA+GGG - chr3.2:65396787-65396806 MS.gene99894:intron 25.0%
!!! TTTTGCAACAACTTTTTAAG+TGG - chr3.2:65395650-65395669 MS.gene99894:intron 25.0%
AAAATGATACACCTAATCAC+AGG - chr3.2:65396042-65396061 MS.gene99894:CDS 30.0%
AACAATGAAAATGTTACCCA+AGG - chr3.2:65396397-65396416 MS.gene99894:intron 30.0%
AATTTGGTTATCCTCATTGT+TGG + chr3.2:65395622-65395641 None:intergenic 30.0%
ATATAACAGATTCTCATGGA+TGG + chr3.2:65396733-65396752 None:intergenic 30.0%
ATGAATAGCAAAAATCTAGC+AGG - chr3.2:65396472-65396491 MS.gene99894:intron 30.0%
CAACACATGTAAGAAAATTC+GGG + chr3.2:65395973-65395992 None:intergenic 30.0%
GTGAGCTTATCTACTAATAT+AGG - chr3.2:65396829-65396848 MS.gene99894:intron 30.0%
TATATCTATTTACCATCCAC+CGG + chr3.2:65395716-65395735 None:intergenic 30.0%
TGCTAAAAAGGAAAAGATAG+AGG - chr3.2:65396552-65396571 MS.gene99894:intron 30.0%
TGTAAATGCAAATTGACCTT+GGG + chr3.2:65396416-65396435 None:intergenic 30.0%
TTGTAAATGCAAATTGACCT+TGG + chr3.2:65396417-65396436 None:intergenic 30.0%
! TATGTGTCAATGATGATGAT+GGG - chr3.2:65397180-65397199 MS.gene99894:intron 30.0%
!! ATCATTTTTCAGATACGTGT+CGG + chr3.2:65396030-65396049 None:intergenic 30.0%
!! ATTAGTCTTGAATGGAAAAC+TGG - chr3.2:65396502-65396521 MS.gene99894:intron 30.0%
!! CGATGTTTGATTTCAGTTTT+AGG - chr3.2:65396786-65396805 MS.gene99894:intron 30.0%
!! GTTCTTCAATTAGTCTTGAA+TGG - chr3.2:65396494-65396513 MS.gene99894:intron 30.0%
!!! CGTTTTGGAAAATGGTTTAA+GGG - chr3.2:65396666-65396685 MS.gene99894:intron 30.0%
!!! GACATAATCGTTTTGGAAAA+TGG - chr3.2:65396658-65396677 MS.gene99894:intron 30.0%
!!! TCGTTTTGGAAAATGGTTTA+AGG - chr3.2:65396665-65396684 MS.gene99894:intron 30.0%
AATTTGACACTCCTGTGATT+AGG + chr3.2:65396056-65396075 None:intergenic 35.0%
ACAAGTGCTTACGATATAAG+CGG - chr3.2:65397035-65397054 MS.gene99894:intron 35.0%
ACTCATATGAATTTCAGTCG+TGG + chr3.2:65395786-65395805 None:intergenic 35.0%
AGACTCATCTACGGTAAAAT+TGG + chr3.2:65395884-65395903 None:intergenic 35.0%
ATCGGCAACAACATAGTAAT+TGG + chr3.2:65395222-65395241 None:intergenic 35.0%
CATACCTTAGCAGAAATAGT+AGG + chr3.2:65395266-65395285 None:intergenic 35.0%
CTAAAACGACAACATGTGTT+TGG + chr3.2:65395199-65395218 None:intergenic 35.0%
GTTGACGCAGTTTAAATATG+TGG - chr3.2:65395680-65395699 MS.gene99894:intron 35.0%
TAGCAGAAATAGTAGGAAGT+GGG + chr3.2:65395259-65395278 None:intergenic 35.0%
TATTAATCTCCCTCAAACCA+AGG - chr3.2:65395121-65395140 MS.gene99894:CDS 35.0%
TCACATTGACCAGTTCAAAT+AGG - chr3.2:65395580-65395599 MS.gene99894:intron 35.0%
TGGTTCAGTATAATGTCTCT+TGG - chr3.2:65397345-65397364 MS.gene99894:CDS 35.0%
TGTGTTGTATGTGTATCGTA+CGG - chr3.2:65395986-65396005 MS.gene99894:CDS 35.0%
TTAGCAGAAATAGTAGGAAG+TGG + chr3.2:65395260-65395279 None:intergenic 35.0%
! CTATGTGTCAATGATGATGA+TGG - chr3.2:65397179-65397198 MS.gene99894:intron 35.0%
! GTTGCTTTCTCAGCAAATTT+AGG - chr3.2:65395496-65395515 MS.gene99894:intron 35.0%
!! ACATTTATGGTTTGTTTGGG+AGG - chr3.2:65396108-65396127 MS.gene99894:intron 35.0%
!! ACTTCCTACTATTTCTGCTA+AGG - chr3.2:65395259-65395278 MS.gene99894:intron 35.0%
!! CATTTATGGTTTGTTTGGGA+GGG - chr3.2:65396109-65396128 MS.gene99894:intron 35.0%
!!! CAACTTTTTAAGTGGTTGAC+TGG - chr3.2:65395658-65395677 MS.gene99894:intron 35.0%
!!! GGAAATTCATGAGTTTTGGA+GGG + chr3.2:65396299-65396318 None:intergenic 35.0%
ACAATTCGTGTTCCTGAACT+TGG + chr3.2:65395068-65395087 None:intergenic 40.0%
ACACAGCATAGACTCATCTA+CGG + chr3.2:65395893-65395912 None:intergenic 40.0%
ACTGGGGATACTTAACCAAA+TGG + chr3.2:65395147-65395166 None:intergenic 40.0%
ATGTGGTTAATTACATCCGG+TGG - chr3.2:65395697-65395716 MS.gene99894:intron 40.0%
CAATTCGTGTTCCTGAACTT+GGG + chr3.2:65395067-65395086 None:intergenic 40.0%
CCAAGCTTTCCTATTTGAAC+TGG + chr3.2:65395592-65395611 None:intergenic 40.0%
CCAGTTCAAATAGGAAAGCT+TGG - chr3.2:65395589-65395608 MS.gene99894:intron 40.0%
CGTGGTTAATGAAGTAACGT+TGG + chr3.2:65395768-65395787 None:intergenic 40.0%
CTTGAGCTAAGGAAACTTGA+TGG - chr3.2:65396696-65396715 MS.gene99894:intron 40.0%
GAAGTAAGCGAAGCAACAAA+TGG - chr3.2:65397312-65397331 MS.gene99894:CDS 40.0%
GATACTTAACCAAATGGCCT+TGG + chr3.2:65395141-65395160 None:intergenic 40.0%
GTGTTGTATGTGTATCGTAC+GGG - chr3.2:65395987-65396006 MS.gene99894:CDS 40.0%
GTTGTTGCCGATAATATCCA+GGG - chr3.2:65395230-65395249 MS.gene99894:intron 40.0%
GTTTATCCAAATGGGGATCA+TGG - chr3.2:65397069-65397088 MS.gene99894:intron 40.0%
TGGAATCTCTGCCAAAGATT+GGG - chr3.2:65396522-65396541 MS.gene99894:intron 40.0%
TGTTGTTGCCGATAATATCC+AGG - chr3.2:65395229-65395248 MS.gene99894:intron 40.0%
TTACATCCATGATCCCCATT+TGG + chr3.2:65397078-65397097 None:intergenic 40.0%
TTGAGGGAGATTAATAAGCG+AGG + chr3.2:65395117-65395136 None:intergenic 40.0%
TTGGATACAGACCAACAATG+AGG - chr3.2:65395608-65395627 MS.gene99894:intron 40.0%
TTGGGACTCTGTTGCTAAAA+AGG - chr3.2:65396540-65396559 MS.gene99894:intron 40.0%
! GGAGGGAAATTCATGAGTTT+TGG + chr3.2:65396303-65396322 None:intergenic 40.0%
! TGTATCTGAGACGCTACTTT+CGG - chr3.2:65397400-65397419 MS.gene99894:CDS 40.0%
! TTTGTTTGGGAGGGAGATTT+TGG - chr3.2:65396118-65396137 MS.gene99894:intron 40.0%
!! GGGAAATTCATGAGTTTTGG+AGG + chr3.2:65396300-65396319 None:intergenic 40.0%
!! TGTCAATGATGATGATGGGT+GGG - chr3.2:65397184-65397203 MS.gene99894:intron 40.0%
!!! TCAGATACGTGTCGGTTTTT+GGG + chr3.2:65396022-65396041 None:intergenic 40.0%
!!! TTCAGATACGTGTCGGTTTT+TGG + chr3.2:65396023-65396042 None:intergenic 40.0%
!!! TTCATGAGTTTTGGAGGGAT+AGG + chr3.2:65396294-65396313 None:intergenic 40.0%
AAAGGCTTCAACCCAAGTTC+AGG - chr3.2:65395053-65395072 MS.gene99894:CDS 45.0%
ACGCACTTAGTTCCTGAACT+GGG + chr3.2:65395164-65395183 None:intergenic 45.0%
AGCAACAGAGTCCCAATCTT+TGG + chr3.2:65396536-65396555 None:intergenic 45.0%
CTGGAATCTCTGCCAAAGAT+TGG - chr3.2:65396521-65396540 MS.gene99894:intron 45.0%
GCATTTACAACTACGGAGAG+TGG - chr3.2:65396427-65396446 MS.gene99894:intron 45.0%
GGTTAATTACATCCGGTGGA+TGG - chr3.2:65395701-65395720 MS.gene99894:intron 45.0%
TAAACTAAGGTCCTGCACGA+TGG - chr3.2:65395806-65395825 MS.gene99894:intron 45.0%
TATGTGTATCGTACGGGTGT+CGG - chr3.2:65395993-65396012 MS.gene99894:CDS 45.0%
TCCATATGGAGATGTCACCT+GGG + chr3.2:65396365-65396384 None:intergenic 45.0%
TGGGTGACCCTGGATATTAT+CGG + chr3.2:65395240-65395259 None:intergenic 45.0%
TGGTTAAGTATCCCCAGTTC+AGG - chr3.2:65395149-65395168 MS.gene99894:CDS 45.0%
TTCCATATGGAGATGTCACC+TGG + chr3.2:65396366-65396385 None:intergenic 45.0%
! AACCAAATGGCCTTGGTTTG+AGG + chr3.2:65395134-65395153 None:intergenic 45.0%
! ACCAAATGGCCTTGGTTTGA+GGG + chr3.2:65395133-65395152 None:intergenic 45.0%
! GTAGCTATGTGGCATGCTTT+TGG - chr3.2:65396449-65396468 MS.gene99894:intron 45.0%
!! AGGGTGTTGAACTTGAGCTA+AGG - chr3.2:65396685-65396704 MS.gene99894:intron 45.0%
!! GTGTCAATGATGATGATGGG+TGG - chr3.2:65397183-65397202 MS.gene99894:intron 45.0%
AGATGTCACCTGGGGCAAAA+AGG + chr3.2:65396356-65396375 None:intergenic 50.0%
CAACAAATGGCAGAGTTGCG+TGG - chr3.2:65397325-65397344 MS.gene99894:CDS 50.0%
CACGCACTTAGTTCCTGAAC+TGG + chr3.2:65395165-65395184 None:intergenic 50.0%
CCATATGGAGATGTCACCTG+GGG + chr3.2:65396364-65396383 None:intergenic 50.0%
CGCACTTAGTTCCTGAACTG+GGG + chr3.2:65395163-65395182 None:intergenic 50.0%
GCAGTCATGTATCACACCGA+GGG + chr3.2:65396334-65396353 None:intergenic 50.0%
GTCTCTTGGCGTATGCGTTT+CGG - chr3.2:65397359-65397378 MS.gene99894:CDS 50.0%
TACGGAGAGTGGTAGCTATG+TGG - chr3.2:65396438-65396457 MS.gene99894:intron 50.0%
TCCCTCAAACCAAGGCCATT+TGG - chr3.2:65395129-65395148 MS.gene99894:CDS 50.0%
! ATCACACCGAGGGTTTGCTT+GGG + chr3.2:65396324-65396343 None:intergenic 50.0%
! TATCACACCGAGGGTTTGCT+TGG + chr3.2:65396325-65396344 None:intergenic 50.0%
!! TTGGGAGGGAGATTTTGGAG+AGG - chr3.2:65396123-65396142 MS.gene99894:intron 50.0%
AGGAACTAAGTGCGTGTCGC+AGG - chr3.2:65395169-65395188 MS.gene99894:CDS 55.0%
CCCCAGGTGACATCTCCATA+TGG - chr3.2:65396361-65396380 MS.gene99894:intron 55.0%
GGCAGTCATGTATCACACCG+AGG + chr3.2:65396335-65396354 None:intergenic 55.0%
TAGTAGGAAGTGGGTGACCC+TGG + chr3.2:65395250-65395269 None:intergenic 55.0%
TTCCCTCCCAAGCAAACCCT+CGG - chr3.2:65396315-65396334 MS.gene99894:intron 55.0%
! CATGACTGCCTTTTTGCCCC+AGG - chr3.2:65396345-65396364 MS.gene99894:intron 55.0%
! GTGTTGATGTGCCATCGTGC+AGG + chr3.2:65395820-65395839 None:intergenic 55.0%
!! GGAGGGAGATTTTGGAGAGG+AGG - chr3.2:65396126-65396145 MS.gene99894:intron 55.0%
! ACACCGAGGGTTTGCTTGGG+AGG + chr3.2:65396321-65396340 None:intergenic 60.0%
! CACCGAGGGTTTGCTTGGGA+GGG + chr3.2:65396320-65396339 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 65395047 65397440 65395047 ID=MS.gene99894
chr3.2 mRNA 65395047 65397440 65395047 ID=MS.gene99894.t1;Parent=MS.gene99894
chr3.2 exon 65397207 65397440 65397207 ID=MS.gene99894.t1.exon1;Parent=MS.gene99894.t1
chr3.2 CDS 65397207 65397440 65397207 ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1
chr3.2 exon 65395914 65396120 65395914 ID=MS.gene99894.t1.exon2;Parent=MS.gene99894.t1
chr3.2 CDS 65395914 65396120 65395914 ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1
chr3.2 exon 65395724 65395800 65395724 ID=MS.gene99894.t1.exon3;Parent=MS.gene99894.t1
chr3.2 CDS 65395724 65395800 65395724 ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1
chr3.2 exon 65395047 65395191 65395047 ID=MS.gene99894.t1.exon4;Parent=MS.gene99894.t1
chr3.2 CDS 65395047 65395191 65395047 ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1
Gene Sequence

>MS.gene99894

ATGGCAAAAGGCTTCAACCCAAGTTCAGGAACACGAATTGTTCTTAGTATTTTATTGTTATGCTTCACCTCGCTTATTAATCTCCCTCAAACCAAGGCCATTTGGTTAAGTATCCCCAGTTCAGGAACTAAGTGCGTGTCGCAGGATATCCAAACACATGTTGTCGTTTTAGCCAATTACTATGTTGTTGCCGATAATATCCAGGGTCACCCACTTCCTACTATTTCTGCTAAGGTATGCTTTATTATTTTTTTCTTGGTTTTGTTTATTTAATAGTATGAAAATTCATATTCATGTTTGATCTTTATGCTTTATTTGGTCAAAGCATGCACTTAATTTTGTTTAATTTAAAGTTTCTTCAACTTAGGATTATAAATTTGTTTATGAGGCTAATAGGGATAACACTAGTACCAAATTTGTATTGACGTTGAATTTTCTGACTTTAATTTGTTGCTTTCTCAGCAAATTTAGGACCAAATTTCATCCTTGTTCTTTAAACTTAATGGTGTAAAATAAGGATAGAGACTGAAAATTCACATTGACCAGTTCAAATAGGAAAGCTTGGATACAGACCAACAATGAGGATAACCAAATTTAGACAACTTTTGCAACAACTTTTTAAGTGGTTGACTGGTTGACGCAGTTTAAATATGTGGTTAATTACATCCGGTGGATGGTAAATAGATATAATATATTAGGTGTTGAAACTCATTAACTACCAACGTTACTTCATTAACCACGACTGAAATTCATATGAGTTAAACTAAGGTCCTGCACGATGGCACATCAACACCACTAATGTAGTAGTTTTTTTTTTTTTTTTTTTTTAAGTGTCCAATTTTACCGTAGATGAGTCTATGCTGTGTTTGAAGAGTGTCTAATGTGTGTCAAAAGCAAAGAAAAAAGTGTTTTTGTGACACTTGCCCGAATTTTCTTACATGTGTTGTATGTGTATCGTACGGGTGTCGGAAACCCAAAAACCGACACGTATCTGAAAAATGATACACCTAATCACAGGAGTGTCAAATTTGTCTATAATTGAAAACACTAACTCAACTAATACATTTATGGTTTGTTTGGGAGGGAGATTTTGGAGAGGAGGACTGTTTTTTCTTTTCTATTTTTAAACAAGCTATAAGATATTTTTAAAAATGAACGAAGTGTGATTGAATTGTTATATGATCATATATCACGATAGTTTTTTAAATTTTTTTAAATCTCAAATATATATATTAAAATATAGACCTATCCCTCCAAAACTCATGAATTTCCCTCCCAAGCAAACCCTCGGTGTGATACATGACTGCCTTTTTGCCCCAGGTGACATCTCCATATGGAAATAATCTTCACAACAATGAAAATGTTACCCAAGGTCAATTTGCATTTACAACTACGGAGAGTGGTAGCTATGTGGCATGCTTTTGGATGAATAGCAAAAATCTAGCAGGTTCTTCAATTAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAGATTGGGACTCTGTTGCTAAAAAGGAAAAGATAGAGGTAATAAATAAATTTCATTCATTCTCTATCTTTGCCTTTGTAATATCTATATGGGATTTGTTTATTTATATAGAAGTGTTTAATGACATAATCGTTTTGGAAAATGGTTTAAGGGTGTTGAACTTGAGCTAAGGAAACTTGATGGAGCTGTGCAAGCCATCCATGAGAATCTGTTATATTTAAAGAACAGGTAAAATCTCTTATACTCATTGCGATGTTTGATTTCAGTTTTAGGGTCTGTTTAGATTAATTTATGTGAGCTTATCTACTAATATAGGCACTTATGAGACTGTTTGAGAGAGCTTTTGAAAATAACTCATGATATCTCCATAAAATTGTTTTGAACTTTTTTATAAGCCATCTAATATAGTTTATGAAAATAGCTTATAGCTAATAGGAAAATAGATTGACCTTATTTCATCTTTTGTTATAGAGATAACTTATACATTAACACTTATAAGACAAGTGCTTACGATATAAGCGGTTAATTAAGATGTTTATCCAAATGGGGATCATGGATGTAATATTTCTTTTCTGAGATCTTTTTATTAAGTTGGGATCTTCAAATTTATTCAAAGAAAGTTAGGGTTCTTCAAATCTCTTAGCTATGTGTCAATGATGATGATGGGTGGGATGAAAAACATAATAAACACAAAATAACTGAGATAATTCATTATGCTTGATTAGTGCATTTCAAAACATTTTTTTTGCACATTGTATAGGGAAGCAGAGATGAGAGAAGTAAGCGAAGCAACAAATGGCAGAGTTGCGTGGTTCAGTATAATGTCTCTTGGCGTATGCGTTTCGGTTTCAGTGTTGCAGCTGTTGTATCTGAGACGCTACTTTCGGAAGAAGAAGCTCATATAG

Protein sequence

>MS.gene99894.t1

MAKGFNPSSGTRIVLSILLLCFTSLINLPQTKAIWLSIPSSGTKCVSQDIQTHVVVLANYYVVADNIQGHPLPTISAKVTSPYGNNLHNNENVTQGQFAFTTTESGSYVACFWMNSKNLAGSSISLEWKTGISAKDWDSVAKKEKIEGVELELRKLDGAVQAIHENLLYLKNREAEMREVSEATNGRVAWFSIMSLGVCVSVSVLQLLYLRRYFRKKKLI