Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99894.t1 | XP_003601065.1 | 97.7 | 220 | 2 | 1 | 1 | 220 | 1 | 217 | 2.90E-113 | 417.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99894.t1 | Q6IDL4 | 63.7 | 204 | 70 | 2 | 19 | 220 | 16 | 217 | 1.5e-70 | 267.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99894.t1 | B7FMU8 | 97.7 | 220 | 2 | 1 | 1 | 220 | 1 | 217 | 2.1e-113 | 417.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene99894 | 0.830143 | 3.47E-55 | -1.69E-46 |
MS.gene04918 | MS.gene99894 | 0.833757 | 4.44E-56 | -1.69E-46 |
MS.gene04919 | MS.gene99894 | 0.800849 | 1.19E-48 | -1.69E-46 |
MS.gene04920 | MS.gene99894 | 0.821742 | 3.43E-53 | -1.69E-46 |
MS.gene049254 | MS.gene99894 | 0.862319 | 5.51E-64 | -1.69E-46 |
MS.gene049283 | MS.gene99894 | 0.835273 | 1.85E-56 | -1.69E-46 |
MS.gene049350 | MS.gene99894 | 0.816588 | 5.12E-52 | -1.69E-46 |
MS.gene049368 | MS.gene99894 | 0.842015 | 3.35E-58 | -1.69E-46 |
MS.gene049499 | MS.gene99894 | 0.846633 | 1.92E-59 | -1.69E-46 |
MS.gene049680 | MS.gene99894 | 0.808275 | 3.35E-50 | -1.69E-46 |
MS.gene049711 | MS.gene99894 | 0.818685 | 1.72E-52 | -1.69E-46 |
MS.gene049807 | MS.gene99894 | 0.820729 | 5.88E-53 | -1.69E-46 |
MS.gene049983 | MS.gene99894 | 0.825325 | 4.98E-54 | -1.69E-46 |
MS.gene050414 | MS.gene99894 | 0.8072 | 5.68E-50 | -1.69E-46 |
MS.gene050559 | MS.gene99894 | 0.844904 | 5.66E-59 | -1.69E-46 |
MS.gene050561 | MS.gene99894 | 0.835475 | 1.64E-56 | -1.69E-46 |
MS.gene050562 | MS.gene99894 | 0.83251 | 9.07E-56 | -1.69E-46 |
MS.gene050646 | MS.gene99894 | 0.816797 | 4.60E-52 | -1.69E-46 |
MS.gene050828 | MS.gene99894 | 0.803433 | 3.49E-49 | -1.69E-46 |
MS.gene050945 | MS.gene99894 | 0.815433 | 9.27E-52 | -1.69E-46 |
MS.gene050955 | MS.gene99894 | 0.800074 | 1.71E-48 | -1.69E-46 |
MS.gene051043 | MS.gene99894 | 0.812953 | 3.27E-51 | -1.69E-46 |
MS.gene051234 | MS.gene99894 | 0.814001 | 1.92E-51 | -1.69E-46 |
MS.gene051279 | MS.gene99894 | 0.827033 | 1.96E-54 | -1.69E-46 |
MS.gene051332 | MS.gene99894 | 0.80556 | 1.26E-49 | -1.69E-46 |
MS.gene051343 | MS.gene99894 | 0.810234 | 1.28E-50 | -1.69E-46 |
MS.gene051490 | MS.gene99894 | 0.830446 | 2.92E-55 | -1.69E-46 |
MS.gene051676 | MS.gene99894 | 0.826672 | 2.39E-54 | -1.69E-46 |
MS.gene051699 | MS.gene99894 | 0.834451 | 2.98E-56 | -1.69E-46 |
MS.gene051744 | MS.gene99894 | 0.846072 | 2.73E-59 | -1.69E-46 |
MS.gene051832 | MS.gene99894 | 0.813872 | 2.05E-51 | -1.69E-46 |
MS.gene051902 | MS.gene99894 | 0.802469 | 5.53E-49 | -1.69E-46 |
MS.gene051975 | MS.gene99894 | 0.836815 | 7.50E-57 | -1.69E-46 |
MS.gene052016 | MS.gene99894 | 0.83583 | 1.34E-56 | -1.69E-46 |
MS.gene052072 | MS.gene99894 | 0.808874 | 2.50E-50 | -1.69E-46 |
MS.gene052307 | MS.gene99894 | 0.805103 | 1.57E-49 | -1.69E-46 |
MS.gene052463 | MS.gene99894 | 0.841301 | 5.16E-58 | -1.69E-46 |
MS.gene052493 | MS.gene99894 | 0.840676 | 7.53E-58 | -1.69E-46 |
MS.gene052533 | MS.gene99894 | 0.874415 | 6.88E-68 | -1.69E-46 |
MS.gene052534 | MS.gene99894 | 0.820545 | 6.48E-53 | -1.69E-46 |
MS.gene052582 | MS.gene99894 | 0.818215 | 2.20E-52 | -1.69E-46 |
MS.gene052584 | MS.gene99894 | 0.826579 | 2.51E-54 | -1.69E-46 |
MS.gene052685 | MS.gene99894 | 0.823122 | 1.64E-53 | -1.69E-46 |
MS.gene052773 | MS.gene99894 | 0.810279 | 1.25E-50 | -1.69E-46 |
MS.gene052793 | MS.gene99894 | 0.806444 | 8.20E-50 | -1.69E-46 |
MS.gene052855 | MS.gene99894 | 0.822995 | 1.76E-53 | -1.69E-46 |
MS.gene052888 | MS.gene99894 | 0.829173 | 5.97E-55 | -1.69E-46 |
MS.gene052889 | MS.gene99894 | 0.843938 | 1.03E-58 | -1.69E-46 |
MS.gene052890 | MS.gene99894 | 0.817682 | 2.91E-52 | -1.69E-46 |
MS.gene052932 | MS.gene99894 | 0.803845 | 2.87E-49 | -1.69E-46 |
MS.gene053006 | MS.gene99894 | 0.821903 | 3.15E-53 | -1.69E-46 |
MS.gene053094 | MS.gene99894 | 0.817271 | 3.60E-52 | -1.69E-46 |
MS.gene053226 | MS.gene99894 | 0.817908 | 2.58E-52 | -1.69E-46 |
MS.gene053298 | MS.gene99894 | 0.830409 | 2.99E-55 | -1.69E-46 |
MS.gene053340 | MS.gene99894 | 0.804378 | 2.22E-49 | -1.69E-46 |
MS.gene053341 | MS.gene99894 | 0.807188 | 5.71E-50 | -1.69E-46 |
MS.gene05350 | MS.gene99894 | 0.804034 | 2.62E-49 | -1.69E-46 |
MS.gene053931 | MS.gene99894 | 0.803014 | 4.27E-49 | -1.69E-46 |
MS.gene053963 | MS.gene99894 | 0.825711 | 4.04E-54 | -1.69E-46 |
MS.gene053995 | MS.gene99894 | 0.814666 | 1.37E-51 | -1.69E-46 |
MS.gene054178 | MS.gene99894 | 0.843533 | 1.32E-58 | -1.69E-46 |
MS.gene054222 | MS.gene99894 | 0.859969 | 2.86E-63 | -1.69E-46 |
MS.gene05423 | MS.gene99894 | 0.82353 | 1.32E-53 | -1.69E-46 |
MS.gene054403 | MS.gene99894 | 0.803838 | 2.88E-49 | -1.69E-46 |
MS.gene054479 | MS.gene99894 | 0.815167 | 1.06E-51 | -1.69E-46 |
MS.gene054576 | MS.gene99894 | 0.840089 | 1.07E-57 | -1.69E-46 |
MS.gene05458 | MS.gene99894 | 0.805746 | 1.15E-49 | -1.69E-46 |
MS.gene054651 | MS.gene99894 | 0.837883 | 4.00E-57 | -1.69E-46 |
MS.gene05469 | MS.gene99894 | 0.808207 | 3.47E-50 | -1.69E-46 |
MS.gene054892 | MS.gene99894 | 0.883823 | 3.24E-71 | -1.69E-46 |
MS.gene054893 | MS.gene99894 | 0.879085 | 1.66E-69 | -1.69E-46 |
MS.gene055141 | MS.gene99894 | 0.805698 | 1.18E-49 | -1.69E-46 |
MS.gene05517 | MS.gene99894 | 0.813997 | 1.93E-51 | -1.69E-46 |
MS.gene055229 | MS.gene99894 | 0.81959 | 1.07E-52 | -1.69E-46 |
MS.gene055386 | MS.gene99894 | 0.823422 | 1.40E-53 | -1.69E-46 |
MS.gene05539 | MS.gene99894 | 0.806306 | 8.77E-50 | -1.69E-46 |
MS.gene055513 | MS.gene99894 | 0.852885 | 3.44E-61 | -1.69E-46 |
MS.gene055586 | MS.gene99894 | 0.815243 | 1.02E-51 | -1.69E-46 |
MS.gene055841 | MS.gene99894 | 0.812786 | 3.56E-51 | -1.69E-46 |
MS.gene055864 | MS.gene99894 | 0.80835 | 3.23E-50 | -1.69E-46 |
MS.gene056082 | MS.gene99894 | 0.807027 | 6.18E-50 | -1.69E-46 |
MS.gene056174 | MS.gene99894 | 0.818831 | 1.60E-52 | -1.69E-46 |
MS.gene05636 | MS.gene99894 | 0.833116 | 6.42E-56 | -1.69E-46 |
MS.gene056677 | MS.gene99894 | 0.816094 | 6.60E-52 | -1.69E-46 |
MS.gene056699 | MS.gene99894 | 0.863369 | 2.61E-64 | -1.69E-46 |
MS.gene056776 | MS.gene99894 | 0.811076 | 8.39E-51 | -1.69E-46 |
MS.gene05686 | MS.gene99894 | 0.859534 | 3.87E-63 | -1.69E-46 |
MS.gene05689 | MS.gene99894 | 0.815856 | 7.46E-52 | -1.69E-46 |
MS.gene05690 | MS.gene99894 | 0.818006 | 2.46E-52 | -1.69E-46 |
MS.gene056986 | MS.gene99894 | 0.834515 | 2.87E-56 | -1.69E-46 |
MS.gene057034 | MS.gene99894 | 0.829306 | 5.54E-55 | -1.69E-46 |
MS.gene057102 | MS.gene99894 | 0.888932 | 3.80E-73 | -1.69E-46 |
MS.gene057155 | MS.gene99894 | 0.8195 | 1.12E-52 | -1.69E-46 |
MS.gene057208 | MS.gene99894 | 0.862313 | 5.54E-64 | -1.69E-46 |
MS.gene057611 | MS.gene99894 | 0.836135 | 1.12E-56 | -1.69E-46 |
MS.gene058008 | MS.gene99894 | 0.811856 | 5.68E-51 | -1.69E-46 |
MS.gene058095 | MS.gene99894 | 0.831546 | 1.57E-55 | -1.69E-46 |
MS.gene058159 | MS.gene99894 | 0.830229 | 3.30E-55 | -1.69E-46 |
MS.gene058279 | MS.gene99894 | 0.829005 | 6.56E-55 | -1.69E-46 |
MS.gene058355 | MS.gene99894 | 0.800227 | 1.59E-48 | -1.69E-46 |
MS.gene058625 | MS.gene99894 | 0.804936 | 1.70E-49 | -1.69E-46 |
MS.gene058781 | MS.gene99894 | 0.816512 | 5.32E-52 | -1.69E-46 |
MS.gene058783 | MS.gene99894 | 0.804683 | 1.92E-49 | -1.69E-46 |
MS.gene058897 | MS.gene99894 | 0.811054 | 8.48E-51 | -1.69E-46 |
MS.gene059146 | MS.gene99894 | 0.809823 | 1.56E-50 | -1.69E-46 |
MS.gene059170 | MS.gene99894 | 0.826449 | 2.70E-54 | -1.69E-46 |
MS.gene05950 | MS.gene99894 | 0.804254 | 2.36E-49 | -1.69E-46 |
MS.gene05952 | MS.gene99894 | 0.833886 | 4.12E-56 | -1.69E-46 |
MS.gene059774 | MS.gene99894 | 0.866188 | 3.42E-65 | -1.69E-46 |
MS.gene05985 | MS.gene99894 | -0.88111 | 3.15E-70 | -1.69E-46 |
MS.gene059901 | MS.gene99894 | -0.821821 | 3.29E-53 | -1.69E-46 |
MS.gene059935 | MS.gene99894 | 0.812419 | 4.28E-51 | -1.69E-46 |
MS.gene059965 | MS.gene99894 | 0.833952 | 3.97E-56 | -1.69E-46 |
MS.gene060012 | MS.gene99894 | 0.823986 | 1.03E-53 | -1.69E-46 |
MS.gene060259 | MS.gene99894 | 0.83918 | 1.85E-57 | -1.69E-46 |
MS.gene060338 | MS.gene99894 | 0.813738 | 2.20E-51 | -1.69E-46 |
MS.gene060365 | MS.gene99894 | 0.854799 | 9.68E-62 | -1.69E-46 |
MS.gene060373 | MS.gene99894 | 0.802132 | 6.49E-49 | -1.69E-46 |
MS.gene060412 | MS.gene99894 | 0.812249 | 4.66E-51 | -1.69E-46 |
MS.gene060521 | MS.gene99894 | 0.803774 | 2.97E-49 | -1.69E-46 |
MS.gene060697 | MS.gene99894 | 0.862403 | 5.19E-64 | -1.69E-46 |
MS.gene060716 | MS.gene99894 | 0.813168 | 2.93E-51 | -1.69E-46 |
MS.gene060932 | MS.gene99894 | 0.811669 | 6.24E-51 | -1.69E-46 |
MS.gene060933 | MS.gene99894 | 0.817696 | 2.88E-52 | -1.69E-46 |
MS.gene060935 | MS.gene99894 | 0.841468 | 4.67E-58 | -1.69E-46 |
MS.gene060937 | MS.gene99894 | 0.849985 | 2.27E-60 | -1.69E-46 |
MS.gene061047 | MS.gene99894 | 0.800428 | 1.45E-48 | -1.69E-46 |
MS.gene061100 | MS.gene99894 | 0.829623 | 4.64E-55 | -1.69E-46 |
MS.gene061160 | MS.gene99894 | 0.810493 | 1.12E-50 | -1.69E-46 |
MS.gene061188 | MS.gene99894 | 0.875649 | 2.61E-68 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99894.t1 | MTR_3g072600 | 97.727 | 220 | 2 | 1 | 1 | 220 | 1 | 217 | 1.05e-159 | 440 |
MS.gene99894.t1 | MTR_5g058140 | 77.895 | 190 | 37 | 2 | 32 | 220 | 27 | 212 | 1.47e-104 | 300 |
MS.gene99894.t1 | MTR_8g088940 | 67.453 | 212 | 63 | 4 | 12 | 220 | 3 | 211 | 4.19e-94 | 274 |
MS.gene99894.t1 | MTR_2g007210 | 63.158 | 209 | 69 | 3 | 13 | 220 | 5 | 206 | 1.76e-92 | 270 |
MS.gene99894.t1 | MTR_8g088980 | 74.306 | 144 | 35 | 1 | 79 | 220 | 19 | 162 | 1.03e-76 | 228 |
MS.gene99894.t1 | MTR_4g082315 | 44.330 | 194 | 103 | 3 | 31 | 220 | 24 | 216 | 1.17e-57 | 182 |
MS.gene99894.t1 | MTR_6g012770 | 44.809 | 183 | 95 | 3 | 43 | 220 | 31 | 212 | 4.85e-55 | 175 |
MS.gene99894.t1 | MTR_7g011490 | 35.577 | 208 | 129 | 3 | 17 | 220 | 6 | 212 | 2.34e-46 | 152 |
MS.gene99894.t1 | MTR_5g042260 | 34.081 | 223 | 135 | 5 | 4 | 220 | 3 | 219 | 4.61e-43 | 144 |
MS.gene99894.t1 | MTR_5g042320 | 38.798 | 183 | 104 | 5 | 44 | 220 | 43 | 223 | 3.27e-33 | 119 |
MS.gene99894.t1 | MTR_5g042270 | 33.520 | 179 | 113 | 3 | 44 | 220 | 11 | 185 | 1.66e-28 | 106 |
MS.gene99894.t1 | MTR_5g042320 | 39.130 | 138 | 76 | 5 | 44 | 175 | 43 | 178 | 6.70e-22 | 89.4 |
MS.gene99894.t1 | MTR_7g095690 | 27.363 | 201 | 139 | 4 | 20 | 216 | 7 | 204 | 6.82e-16 | 73.6 |
MS.gene99894.t1 | MTR_1g102720 | 25.137 | 183 | 132 | 3 | 36 | 216 | 27 | 206 | 3.46e-14 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99894.t1 | AT1G09580 | 63.415 | 205 | 71 | 2 | 18 | 220 | 15 | 217 | 6.22e-97 | 281 |
MS.gene99894.t1 | AT1G57620 | 58.108 | 222 | 81 | 4 | 1 | 220 | 1 | 212 | 4.94e-91 | 266 |
MS.gene99894.t1 | AT1G21900 | 63.462 | 208 | 72 | 3 | 16 | 220 | 10 | 216 | 1.40e-90 | 265 |
MS.gene99894.t1 | AT3G10780 | 53.535 | 198 | 86 | 3 | 28 | 220 | 21 | 217 | 1.39e-67 | 207 |
MS.gene99894.t1 | AT1G26690 | 40.385 | 208 | 115 | 4 | 17 | 220 | 12 | 214 | 4.30e-54 | 172 |
MS.gene99894.t1 | AT1G14010 | 39.713 | 209 | 119 | 4 | 16 | 220 | 7 | 212 | 7.11e-52 | 167 |
MS.gene99894.t1 | AT2G03290 | 41.327 | 196 | 111 | 2 | 29 | 220 | 18 | 213 | 1.12e-51 | 166 |
MS.gene99894.t1 | AT1G69460 | 41.117 | 197 | 109 | 4 | 29 | 220 | 20 | 214 | 2.39e-51 | 166 |
MS.gene99894.t1 | AT3G29070 | 38.860 | 193 | 113 | 3 | 32 | 220 | 34 | 225 | 5.14e-45 | 150 |
MS.gene99894.t1 | AT2G03040 | 38.926 | 149 | 87 | 2 | 29 | 173 | 18 | 166 | 6.19e-34 | 119 |
MS.gene99894.t1 | AT3G22845 | 26.230 | 183 | 130 | 3 | 36 | 216 | 28 | 207 | 3.80e-14 | 68.9 |
Find 51 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGACTCTGTTGCTAAAA+AGG | 0.253132 | 3.2:-65395925 | MS.gene99894:CDS |
ATCGGCAACAACATAGTAAT+TGG | 0.296460 | 3.2:+65397246 | None:intergenic |
GTCTCTTGGCGTATGCGTTT+CGG | 0.305564 | 3.2:-65395106 | MS.gene99894:CDS |
GTAGCTATGTGGCATGCTTT+TGG | 0.326986 | 3.2:-65396016 | MS.gene99894:CDS |
AGCAACAGAGTCCCAATCTT+TGG | 0.327971 | 3.2:+65395932 | None:intergenic |
ATCTGTTATATTTAAAGAAC+AGG | 0.333875 | 3.2:-65395723 | MS.gene99894:intron |
ATTAGTCTTGAATGGAAAAC+TGG | 0.334614 | 3.2:-65395963 | MS.gene99894:CDS |
ACAATTCGTGTTCCTGAACT+TGG | 0.360761 | 3.2:+65397400 | None:intergenic |
CTGGAATCTCTGCCAAAGAT+TGG | 0.361290 | 3.2:-65395944 | MS.gene99894:CDS |
TGGTTAAGTATCCCCAGTTC+AGG | 0.366565 | 3.2:-65397316 | MS.gene99894:CDS |
GTTCTTCAATTAGTCTTGAA+TGG | 0.366713 | 3.2:-65395971 | MS.gene99894:CDS |
CTAAAACGACAACATGTGTT+TGG | 0.367209 | 3.2:+65397269 | None:intergenic |
AACCAAATGGCCTTGGTTTG+AGG | 0.382119 | 3.2:+65397334 | None:intergenic |
ACCAAATGGCCTTGGTTTGA+GGG | 0.400461 | 3.2:+65397335 | None:intergenic |
AAAGGCTTCAACCCAAGTTC+AGG | 0.405800 | 3.2:-65397412 | MS.gene99894:CDS |
TCCCTCAAACCAAGGCCATT+TGG | 0.405823 | 3.2:-65397336 | MS.gene99894:CDS |
TTGTGAAGATTATTTCCATA+TGG | 0.419312 | 3.2:+65396089 | None:intergenic |
TGTATCTGAGACGCTACTTT+CGG | 0.424544 | 3.2:-65395065 | MS.gene99894:CDS |
GATACTTAACCAAATGGCCT+TGG | 0.444311 | 3.2:+65397327 | None:intergenic |
CAACCATCGGTTATGGCAAA+AGG | 0.447602 | 3.2:-65397430 | None:intergenic |
TGGAATCTCTGCCAAAGATT+GGG | 0.449888 | 3.2:-65395943 | MS.gene99894:CDS |
CACGCACTTAGTTCCTGAAC+TGG | 0.458031 | 3.2:+65397303 | None:intergenic |
TGTTGTTGCCGATAATATCC+AGG | 0.467878 | 3.2:-65397236 | MS.gene99894:CDS |
TGTAAATGCAAATTGACCTT+GGG | 0.478123 | 3.2:+65396052 | None:intergenic |
CTTGAGCTAAGGAAACTTGA+TGG | 0.478866 | 3.2:-65395769 | MS.gene99894:CDS |
CATACCTTAGCAGAAATAGT+AGG | 0.479188 | 3.2:+65397202 | None:intergenic |
AGGAACTAAGTGCGTGTCGC+AGG | 0.493989 | 3.2:-65397296 | MS.gene99894:CDS |
CCCCAGGTGACATCTCCATA+TGG | 0.495395 | 3.2:-65396104 | MS.gene99894:intron |
TTAAATATAACAGATTCTCA+TGG | 0.503411 | 3.2:+65395731 | None:intergenic |
TTGTAAATGCAAATTGACCT+TGG | 0.510774 | 3.2:+65396051 | None:intergenic |
GAAGTAAGCGAAGCAACAAA+TGG | 0.515284 | 3.2:-65395153 | MS.gene99894:CDS |
TCAATTTGCATTTACAACTA+CGG | 0.519360 | 3.2:-65396045 | MS.gene99894:CDS |
TAGTAGGAAGTGGGTGACCC+TGG | 0.521407 | 3.2:+65397218 | None:intergenic |
TGGGTGACCCTGGATATTAT+CGG | 0.530206 | 3.2:+65397228 | None:intergenic |
CAATTCGTGTTCCTGAACTT+GGG | 0.533317 | 3.2:+65397401 | None:intergenic |
ACTTCCTACTATTTCTGCTA+AGG | 0.538663 | 3.2:-65397206 | MS.gene99894:intron |
ACGCACTTAGTTCCTGAACT+GGG | 0.540090 | 3.2:+65397304 | None:intergenic |
ACTGGGGATACTTAACCAAA+TGG | 0.541125 | 3.2:+65397321 | None:intergenic |
TGGTTCAGTATAATGTCTCT+TGG | 0.541189 | 3.2:-65395120 | MS.gene99894:CDS |
AGGGTGTTGAACTTGAGCTA+AGG | 0.542132 | 3.2:-65395780 | MS.gene99894:CDS |
ATATAACAGATTCTCATGGA+TGG | 0.555960 | 3.2:+65395735 | None:intergenic |
TTAGCAGAAATAGTAGGAAG+TGG | 0.568794 | 3.2:+65397208 | None:intergenic |
AACAATGAAAATGTTACCCA+AGG | 0.597853 | 3.2:-65396068 | MS.gene99894:CDS |
TATTAATCTCCCTCAAACCA+AGG | 0.612415 | 3.2:-65397344 | MS.gene99894:CDS |
GCATTTACAACTACGGAGAG+TGG | 0.623113 | 3.2:-65396038 | MS.gene99894:CDS |
TACGGAGAGTGGTAGCTATG+TGG | 0.633734 | 3.2:-65396027 | MS.gene99894:CDS |
TTGAGGGAGATTAATAAGCG+AGG | 0.637007 | 3.2:+65397351 | None:intergenic |
TAGCAGAAATAGTAGGAAGT+GGG | 0.638507 | 3.2:+65397209 | None:intergenic |
GTTGTTGCCGATAATATCCA+GGG | 0.640526 | 3.2:-65397235 | MS.gene99894:CDS |
CAACAAATGGCAGAGTTGCG+TGG | 0.644187 | 3.2:-65395140 | MS.gene99894:CDS |
CGCACTTAGTTCCTGAACTG+GGG | 0.674873 | 3.2:+65397305 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAAATAGATATAATATATT+AGG | - | chr3.2:65395723-65395742 | MS.gene99894:intron | 10.0% |
!! | AAATTTATTCAAAGAAAGTT+AGG | - | chr3.2:65397138-65397157 | MS.gene99894:intron | 15.0% |
!! | AATTTATTCAAAGAAAGTTA+GGG | - | chr3.2:65397139-65397158 | MS.gene99894:intron | 15.0% |
!!! | AAAAGTTCAAAACAATTTTA+TGG | + | chr3.2:65396904-65396923 | None:intergenic | 15.0% |
!!! | ATGCTTTATTATTTTTTTCT+TGG | - | chr3.2:65395283-65395302 | MS.gene99894:intron | 15.0% |
!!! | TTTTCATAAACTATATTAGA+TGG | + | chr3.2:65396934-65396953 | None:intergenic | 15.0% |
!! | AAAAAAAACTACTACATTAG+TGG | + | chr3.2:65395842-65395861 | None:intergenic | 20.0% |
!! | AAACTTAATGGTGTAAAATA+AGG | - | chr3.2:65395542-65395561 | MS.gene99894:intron | 20.0% |
!! | AATTAAGATGTTTATCCAAA+TGG | - | chr3.2:65397060-65397079 | MS.gene99894:intron | 20.0% |
!! | AATTCATATGAGTTAAACTA+AGG | - | chr3.2:65395793-65395812 | MS.gene99894:intron | 20.0% |
!! | ATCTGTTATATTTAAAGAAC+AGG | - | chr3.2:65396742-65396761 | MS.gene99894:intron | 20.0% |
!! | ATTAAGATGTTTATCCAAAT+GGG | - | chr3.2:65397061-65397080 | MS.gene99894:intron | 20.0% |
!! | CTATAACAAAAGATGAAATA+AGG | + | chr3.2:65396987-65397006 | None:intergenic | 20.0% |
!! | TAACTCAACTAATACATTTA+TGG | - | chr3.2:65396095-65396114 | MS.gene99894:CDS | 20.0% |
!! | TTAAATATAACAGATTCTCA+TGG | + | chr3.2:65396737-65396756 | None:intergenic | 20.0% |
!!! | AATACATTTATGGTTTGTTT+GGG | - | chr3.2:65396105-65396124 | MS.gene99894:intron | 20.0% |
!!! | ATTTAAAGTTTCTTCAACTT+AGG | - | chr3.2:65395392-65395411 | MS.gene99894:intron | 20.0% |
!!! | ATTTTTTTTGCACATTGTAT+AGG | - | chr3.2:65397274-65397293 | MS.gene99894:CDS | 20.0% |
!!! | GGATTATAAATTTGTTTATG+AGG | - | chr3.2:65395413-65395432 | MS.gene99894:intron | 20.0% |
!!! | TAATACATTTATGGTTTGTT+TGG | - | chr3.2:65396104-65396123 | MS.gene99894:intron | 20.0% |
!!! | TGAGATCTTTTTATTAAGTT+GGG | - | chr3.2:65397109-65397128 | MS.gene99894:intron | 20.0% |
!!! | TTTGATCTTTATGCTTTATT+TGG | - | chr3.2:65395343-65395362 | MS.gene99894:intron | 20.0% |
!!! | TTTTTTTTGCACATTGTATA+GGG | - | chr3.2:65397275-65397294 | MS.gene99894:CDS | 20.0% |
! | AATATGTGGTTAATTACATC+CGG | - | chr3.2:65395694-65395713 | MS.gene99894:intron | 25.0% |
! | ACAACACATGTAAGAAAATT+CGG | + | chr3.2:65395974-65395993 | None:intergenic | 25.0% |
! | ACCATTAAGTTTAAAGAACA+AGG | + | chr3.2:65395534-65395553 | None:intergenic | 25.0% |
! | ATCCCATATAGATATTACAA+AGG | + | chr3.2:65396611-65396630 | None:intergenic | 25.0% |
! | ATTCAACGTCAATACAAATT+TGG | + | chr3.2:65395460-65395479 | None:intergenic | 25.0% |
! | ATTTGTTTATGAGGCTAATA+GGG | - | chr3.2:65395422-65395441 | MS.gene99894:intron | 25.0% |
! | GAAAATAGCTTATAGCTAAT+AGG | - | chr3.2:65396949-65396968 | MS.gene99894:intron | 25.0% |
! | TAAAGAACAAGGATGAAATT+TGG | + | chr3.2:65395523-65395542 | None:intergenic | 25.0% |
! | TCAATTTGCATTTACAACTA+CGG | - | chr3.2:65396420-65396439 | MS.gene99894:intron | 25.0% |
! | TCCTTGTTCTTTAAACTTAA+TGG | - | chr3.2:65395530-65395549 | MS.gene99894:intron | 25.0% |
! | TGCCTTTGTAATATCTATAT+GGG | - | chr3.2:65396606-65396625 | MS.gene99894:intron | 25.0% |
! | TTAAGATGTTTATCCAAATG+GGG | - | chr3.2:65397062-65397081 | MS.gene99894:intron | 25.0% |
! | TTGCAAAAGTTGTCTAAATT+TGG | + | chr3.2:65395638-65395657 | None:intergenic | 25.0% |
! | TTGCCTTTGTAATATCTATA+TGG | - | chr3.2:65396605-65396624 | MS.gene99894:intron | 25.0% |
! | TTGTGAAGATTATTTCCATA+TGG | + | chr3.2:65396379-65396398 | None:intergenic | 25.0% |
!! | AATTTGTTTATGAGGCTAAT+AGG | - | chr3.2:65395421-65395440 | MS.gene99894:intron | 25.0% |
!! | CTGAGATCTTTTTATTAAGT+TGG | - | chr3.2:65397108-65397127 | MS.gene99894:intron | 25.0% |
!! | GTTTAATGACATAATCGTTT+TGG | - | chr3.2:65396651-65396670 | MS.gene99894:intron | 25.0% |
!!! | GATGTTTGATTTCAGTTTTA+GGG | - | chr3.2:65396787-65396806 | MS.gene99894:intron | 25.0% |
!!! | TTTTGCAACAACTTTTTAAG+TGG | - | chr3.2:65395650-65395669 | MS.gene99894:intron | 25.0% |
AAAATGATACACCTAATCAC+AGG | - | chr3.2:65396042-65396061 | MS.gene99894:CDS | 30.0% | |
AACAATGAAAATGTTACCCA+AGG | - | chr3.2:65396397-65396416 | MS.gene99894:intron | 30.0% | |
AATTTGGTTATCCTCATTGT+TGG | + | chr3.2:65395622-65395641 | None:intergenic | 30.0% | |
ATATAACAGATTCTCATGGA+TGG | + | chr3.2:65396733-65396752 | None:intergenic | 30.0% | |
ATGAATAGCAAAAATCTAGC+AGG | - | chr3.2:65396472-65396491 | MS.gene99894:intron | 30.0% | |
CAACACATGTAAGAAAATTC+GGG | + | chr3.2:65395973-65395992 | None:intergenic | 30.0% | |
GTGAGCTTATCTACTAATAT+AGG | - | chr3.2:65396829-65396848 | MS.gene99894:intron | 30.0% | |
TATATCTATTTACCATCCAC+CGG | + | chr3.2:65395716-65395735 | None:intergenic | 30.0% | |
TGCTAAAAAGGAAAAGATAG+AGG | - | chr3.2:65396552-65396571 | MS.gene99894:intron | 30.0% | |
TGTAAATGCAAATTGACCTT+GGG | + | chr3.2:65396416-65396435 | None:intergenic | 30.0% | |
TTGTAAATGCAAATTGACCT+TGG | + | chr3.2:65396417-65396436 | None:intergenic | 30.0% | |
! | TATGTGTCAATGATGATGAT+GGG | - | chr3.2:65397180-65397199 | MS.gene99894:intron | 30.0% |
!! | ATCATTTTTCAGATACGTGT+CGG | + | chr3.2:65396030-65396049 | None:intergenic | 30.0% |
!! | ATTAGTCTTGAATGGAAAAC+TGG | - | chr3.2:65396502-65396521 | MS.gene99894:intron | 30.0% |
!! | CGATGTTTGATTTCAGTTTT+AGG | - | chr3.2:65396786-65396805 | MS.gene99894:intron | 30.0% |
!! | GTTCTTCAATTAGTCTTGAA+TGG | - | chr3.2:65396494-65396513 | MS.gene99894:intron | 30.0% |
!!! | CGTTTTGGAAAATGGTTTAA+GGG | - | chr3.2:65396666-65396685 | MS.gene99894:intron | 30.0% |
!!! | GACATAATCGTTTTGGAAAA+TGG | - | chr3.2:65396658-65396677 | MS.gene99894:intron | 30.0% |
!!! | TCGTTTTGGAAAATGGTTTA+AGG | - | chr3.2:65396665-65396684 | MS.gene99894:intron | 30.0% |
AATTTGACACTCCTGTGATT+AGG | + | chr3.2:65396056-65396075 | None:intergenic | 35.0% | |
ACAAGTGCTTACGATATAAG+CGG | - | chr3.2:65397035-65397054 | MS.gene99894:intron | 35.0% | |
ACTCATATGAATTTCAGTCG+TGG | + | chr3.2:65395786-65395805 | None:intergenic | 35.0% | |
AGACTCATCTACGGTAAAAT+TGG | + | chr3.2:65395884-65395903 | None:intergenic | 35.0% | |
ATCGGCAACAACATAGTAAT+TGG | + | chr3.2:65395222-65395241 | None:intergenic | 35.0% | |
CATACCTTAGCAGAAATAGT+AGG | + | chr3.2:65395266-65395285 | None:intergenic | 35.0% | |
CTAAAACGACAACATGTGTT+TGG | + | chr3.2:65395199-65395218 | None:intergenic | 35.0% | |
GTTGACGCAGTTTAAATATG+TGG | - | chr3.2:65395680-65395699 | MS.gene99894:intron | 35.0% | |
TAGCAGAAATAGTAGGAAGT+GGG | + | chr3.2:65395259-65395278 | None:intergenic | 35.0% | |
TATTAATCTCCCTCAAACCA+AGG | - | chr3.2:65395121-65395140 | MS.gene99894:CDS | 35.0% | |
TCACATTGACCAGTTCAAAT+AGG | - | chr3.2:65395580-65395599 | MS.gene99894:intron | 35.0% | |
TGGTTCAGTATAATGTCTCT+TGG | - | chr3.2:65397345-65397364 | MS.gene99894:CDS | 35.0% | |
TGTGTTGTATGTGTATCGTA+CGG | - | chr3.2:65395986-65396005 | MS.gene99894:CDS | 35.0% | |
TTAGCAGAAATAGTAGGAAG+TGG | + | chr3.2:65395260-65395279 | None:intergenic | 35.0% | |
! | CTATGTGTCAATGATGATGA+TGG | - | chr3.2:65397179-65397198 | MS.gene99894:intron | 35.0% |
! | GTTGCTTTCTCAGCAAATTT+AGG | - | chr3.2:65395496-65395515 | MS.gene99894:intron | 35.0% |
!! | ACATTTATGGTTTGTTTGGG+AGG | - | chr3.2:65396108-65396127 | MS.gene99894:intron | 35.0% |
!! | ACTTCCTACTATTTCTGCTA+AGG | - | chr3.2:65395259-65395278 | MS.gene99894:intron | 35.0% |
!! | CATTTATGGTTTGTTTGGGA+GGG | - | chr3.2:65396109-65396128 | MS.gene99894:intron | 35.0% |
!!! | CAACTTTTTAAGTGGTTGAC+TGG | - | chr3.2:65395658-65395677 | MS.gene99894:intron | 35.0% |
!!! | GGAAATTCATGAGTTTTGGA+GGG | + | chr3.2:65396299-65396318 | None:intergenic | 35.0% |
ACAATTCGTGTTCCTGAACT+TGG | + | chr3.2:65395068-65395087 | None:intergenic | 40.0% | |
ACACAGCATAGACTCATCTA+CGG | + | chr3.2:65395893-65395912 | None:intergenic | 40.0% | |
ACTGGGGATACTTAACCAAA+TGG | + | chr3.2:65395147-65395166 | None:intergenic | 40.0% | |
ATGTGGTTAATTACATCCGG+TGG | - | chr3.2:65395697-65395716 | MS.gene99894:intron | 40.0% | |
CAATTCGTGTTCCTGAACTT+GGG | + | chr3.2:65395067-65395086 | None:intergenic | 40.0% | |
CCAAGCTTTCCTATTTGAAC+TGG | + | chr3.2:65395592-65395611 | None:intergenic | 40.0% | |
CCAGTTCAAATAGGAAAGCT+TGG | - | chr3.2:65395589-65395608 | MS.gene99894:intron | 40.0% | |
CGTGGTTAATGAAGTAACGT+TGG | + | chr3.2:65395768-65395787 | None:intergenic | 40.0% | |
CTTGAGCTAAGGAAACTTGA+TGG | - | chr3.2:65396696-65396715 | MS.gene99894:intron | 40.0% | |
GAAGTAAGCGAAGCAACAAA+TGG | - | chr3.2:65397312-65397331 | MS.gene99894:CDS | 40.0% | |
GATACTTAACCAAATGGCCT+TGG | + | chr3.2:65395141-65395160 | None:intergenic | 40.0% | |
GTGTTGTATGTGTATCGTAC+GGG | - | chr3.2:65395987-65396006 | MS.gene99894:CDS | 40.0% | |
GTTGTTGCCGATAATATCCA+GGG | - | chr3.2:65395230-65395249 | MS.gene99894:intron | 40.0% | |
GTTTATCCAAATGGGGATCA+TGG | - | chr3.2:65397069-65397088 | MS.gene99894:intron | 40.0% | |
TGGAATCTCTGCCAAAGATT+GGG | - | chr3.2:65396522-65396541 | MS.gene99894:intron | 40.0% | |
TGTTGTTGCCGATAATATCC+AGG | - | chr3.2:65395229-65395248 | MS.gene99894:intron | 40.0% | |
TTACATCCATGATCCCCATT+TGG | + | chr3.2:65397078-65397097 | None:intergenic | 40.0% | |
TTGAGGGAGATTAATAAGCG+AGG | + | chr3.2:65395117-65395136 | None:intergenic | 40.0% | |
TTGGATACAGACCAACAATG+AGG | - | chr3.2:65395608-65395627 | MS.gene99894:intron | 40.0% | |
TTGGGACTCTGTTGCTAAAA+AGG | - | chr3.2:65396540-65396559 | MS.gene99894:intron | 40.0% | |
! | GGAGGGAAATTCATGAGTTT+TGG | + | chr3.2:65396303-65396322 | None:intergenic | 40.0% |
! | TGTATCTGAGACGCTACTTT+CGG | - | chr3.2:65397400-65397419 | MS.gene99894:CDS | 40.0% |
! | TTTGTTTGGGAGGGAGATTT+TGG | - | chr3.2:65396118-65396137 | MS.gene99894:intron | 40.0% |
!! | GGGAAATTCATGAGTTTTGG+AGG | + | chr3.2:65396300-65396319 | None:intergenic | 40.0% |
!! | TGTCAATGATGATGATGGGT+GGG | - | chr3.2:65397184-65397203 | MS.gene99894:intron | 40.0% |
!!! | TCAGATACGTGTCGGTTTTT+GGG | + | chr3.2:65396022-65396041 | None:intergenic | 40.0% |
!!! | TTCAGATACGTGTCGGTTTT+TGG | + | chr3.2:65396023-65396042 | None:intergenic | 40.0% |
!!! | TTCATGAGTTTTGGAGGGAT+AGG | + | chr3.2:65396294-65396313 | None:intergenic | 40.0% |
AAAGGCTTCAACCCAAGTTC+AGG | - | chr3.2:65395053-65395072 | MS.gene99894:CDS | 45.0% | |
ACGCACTTAGTTCCTGAACT+GGG | + | chr3.2:65395164-65395183 | None:intergenic | 45.0% | |
AGCAACAGAGTCCCAATCTT+TGG | + | chr3.2:65396536-65396555 | None:intergenic | 45.0% | |
CTGGAATCTCTGCCAAAGAT+TGG | - | chr3.2:65396521-65396540 | MS.gene99894:intron | 45.0% | |
GCATTTACAACTACGGAGAG+TGG | - | chr3.2:65396427-65396446 | MS.gene99894:intron | 45.0% | |
GGTTAATTACATCCGGTGGA+TGG | - | chr3.2:65395701-65395720 | MS.gene99894:intron | 45.0% | |
TAAACTAAGGTCCTGCACGA+TGG | - | chr3.2:65395806-65395825 | MS.gene99894:intron | 45.0% | |
TATGTGTATCGTACGGGTGT+CGG | - | chr3.2:65395993-65396012 | MS.gene99894:CDS | 45.0% | |
TCCATATGGAGATGTCACCT+GGG | + | chr3.2:65396365-65396384 | None:intergenic | 45.0% | |
TGGGTGACCCTGGATATTAT+CGG | + | chr3.2:65395240-65395259 | None:intergenic | 45.0% | |
TGGTTAAGTATCCCCAGTTC+AGG | - | chr3.2:65395149-65395168 | MS.gene99894:CDS | 45.0% | |
TTCCATATGGAGATGTCACC+TGG | + | chr3.2:65396366-65396385 | None:intergenic | 45.0% | |
! | AACCAAATGGCCTTGGTTTG+AGG | + | chr3.2:65395134-65395153 | None:intergenic | 45.0% |
! | ACCAAATGGCCTTGGTTTGA+GGG | + | chr3.2:65395133-65395152 | None:intergenic | 45.0% |
! | GTAGCTATGTGGCATGCTTT+TGG | - | chr3.2:65396449-65396468 | MS.gene99894:intron | 45.0% |
!! | AGGGTGTTGAACTTGAGCTA+AGG | - | chr3.2:65396685-65396704 | MS.gene99894:intron | 45.0% |
!! | GTGTCAATGATGATGATGGG+TGG | - | chr3.2:65397183-65397202 | MS.gene99894:intron | 45.0% |
AGATGTCACCTGGGGCAAAA+AGG | + | chr3.2:65396356-65396375 | None:intergenic | 50.0% | |
CAACAAATGGCAGAGTTGCG+TGG | - | chr3.2:65397325-65397344 | MS.gene99894:CDS | 50.0% | |
CACGCACTTAGTTCCTGAAC+TGG | + | chr3.2:65395165-65395184 | None:intergenic | 50.0% | |
CCATATGGAGATGTCACCTG+GGG | + | chr3.2:65396364-65396383 | None:intergenic | 50.0% | |
CGCACTTAGTTCCTGAACTG+GGG | + | chr3.2:65395163-65395182 | None:intergenic | 50.0% | |
GCAGTCATGTATCACACCGA+GGG | + | chr3.2:65396334-65396353 | None:intergenic | 50.0% | |
GTCTCTTGGCGTATGCGTTT+CGG | - | chr3.2:65397359-65397378 | MS.gene99894:CDS | 50.0% | |
TACGGAGAGTGGTAGCTATG+TGG | - | chr3.2:65396438-65396457 | MS.gene99894:intron | 50.0% | |
TCCCTCAAACCAAGGCCATT+TGG | - | chr3.2:65395129-65395148 | MS.gene99894:CDS | 50.0% | |
! | ATCACACCGAGGGTTTGCTT+GGG | + | chr3.2:65396324-65396343 | None:intergenic | 50.0% |
! | TATCACACCGAGGGTTTGCT+TGG | + | chr3.2:65396325-65396344 | None:intergenic | 50.0% |
!! | TTGGGAGGGAGATTTTGGAG+AGG | - | chr3.2:65396123-65396142 | MS.gene99894:intron | 50.0% |
AGGAACTAAGTGCGTGTCGC+AGG | - | chr3.2:65395169-65395188 | MS.gene99894:CDS | 55.0% | |
CCCCAGGTGACATCTCCATA+TGG | - | chr3.2:65396361-65396380 | MS.gene99894:intron | 55.0% | |
GGCAGTCATGTATCACACCG+AGG | + | chr3.2:65396335-65396354 | None:intergenic | 55.0% | |
TAGTAGGAAGTGGGTGACCC+TGG | + | chr3.2:65395250-65395269 | None:intergenic | 55.0% | |
TTCCCTCCCAAGCAAACCCT+CGG | - | chr3.2:65396315-65396334 | MS.gene99894:intron | 55.0% | |
! | CATGACTGCCTTTTTGCCCC+AGG | - | chr3.2:65396345-65396364 | MS.gene99894:intron | 55.0% |
! | GTGTTGATGTGCCATCGTGC+AGG | + | chr3.2:65395820-65395839 | None:intergenic | 55.0% |
!! | GGAGGGAGATTTTGGAGAGG+AGG | - | chr3.2:65396126-65396145 | MS.gene99894:intron | 55.0% |
! | ACACCGAGGGTTTGCTTGGG+AGG | + | chr3.2:65396321-65396340 | None:intergenic | 60.0% |
! | CACCGAGGGTTTGCTTGGGA+GGG | + | chr3.2:65396320-65396339 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 65395047 | 65397440 | 65395047 | ID=MS.gene99894 |
chr3.2 | mRNA | 65395047 | 65397440 | 65395047 | ID=MS.gene99894.t1;Parent=MS.gene99894 |
chr3.2 | exon | 65397207 | 65397440 | 65397207 | ID=MS.gene99894.t1.exon1;Parent=MS.gene99894.t1 |
chr3.2 | CDS | 65397207 | 65397440 | 65397207 | ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1 |
chr3.2 | exon | 65395914 | 65396120 | 65395914 | ID=MS.gene99894.t1.exon2;Parent=MS.gene99894.t1 |
chr3.2 | CDS | 65395914 | 65396120 | 65395914 | ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1 |
chr3.2 | exon | 65395724 | 65395800 | 65395724 | ID=MS.gene99894.t1.exon3;Parent=MS.gene99894.t1 |
chr3.2 | CDS | 65395724 | 65395800 | 65395724 | ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1 |
chr3.2 | exon | 65395047 | 65395191 | 65395047 | ID=MS.gene99894.t1.exon4;Parent=MS.gene99894.t1 |
chr3.2 | CDS | 65395047 | 65395191 | 65395047 | ID=cds.MS.gene99894.t1;Parent=MS.gene99894.t1 |
Gene Sequence |
Protein sequence |