Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67168.t1 | XP_013467067.1 | 86.4 | 1109 | 150 | 1 | 1 | 1108 | 1 | 1109 | 0.00E+00 | 1487.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67168.t1 | P26368 | 31.6 | 380 | 214 | 9 | 512 | 872 | 67 | 419 | 1.3e-34 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67168.t1 | A0A072VGZ7 | 86.4 | 1109 | 150 | 1 | 1 | 1108 | 1 | 1109 | 0.0e+00 | 1487.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene67168 | 0.814641 | 1.39E-51 | -1.69E-46 |
| MS.gene049300 | MS.gene67168 | 0.831721 | 1.42E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene67168 | 0.807059 | 6.08E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene67168 | 0.819089 | 1.39E-52 | -1.69E-46 |
| MS.gene053351 | MS.gene67168 | 0.953687 | 1.58E-111 | -1.69E-46 |
| MS.gene053542 | MS.gene67168 | 0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene67168 | 0.819419 | 1.17E-52 | -1.69E-46 |
| MS.gene054939 | MS.gene67168 | 0.813189 | 2.90E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene67168 | 0.83323 | 6.01E-56 | -1.69E-46 |
| MS.gene056173 | MS.gene67168 | 0.812578 | 3.95E-51 | -1.69E-46 |
| MS.gene056424 | MS.gene67168 | 0.808332 | 3.26E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene67168 | 0.80262 | 5.14E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene67168 | 0.807277 | 5.47E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene67168 | 0.815088 | 1.11E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene67168 | 0.814507 | 1.49E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene67168 | 0.821701 | 3.51E-53 | -1.69E-46 |
| MS.gene058919 | MS.gene67168 | 0.817602 | 3.03E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene67168 | 0.829868 | 4.05E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene67168 | 0.819823 | 9.48E-53 | -1.69E-46 |
| MS.gene060355 | MS.gene67168 | 0.832033 | 1.19E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene67168 | 0.807768 | 4.30E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene67168 | 0.800904 | 1.16E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67168.t1 | MTR_1g041735 | 95.401 | 1109 | 50 | 1 | 1 | 1108 | 1 | 1109 | 0.0 | 2008 |
| MS.gene67168.t1 | MTR_1g041735 | 95.612 | 1071 | 46 | 1 | 39 | 1108 | 1 | 1071 | 0.0 | 1932 |
| MS.gene67168.t1 | MTR_1g041735 | 95.455 | 836 | 37 | 1 | 1 | 835 | 1 | 836 | 0.0 | 1489 |
| MS.gene67168.t1 | MTR_1g041735 | 95.475 | 663 | 30 | 0 | 446 | 1108 | 289 | 951 | 0.0 | 1274 |
| MS.gene67168.t1 | MTR_1g041735 | 92.308 | 338 | 26 | 0 | 39 | 376 | 1 | 338 | 5.12e-179 | 549 |
| MS.gene67168.t1 | MTR_3g005670 | 27.222 | 360 | 223 | 10 | 552 | 880 | 223 | 574 | 1.42e-31 | 132 |
| MS.gene67168.t1 | MTR_3g005670 | 27.933 | 358 | 225 | 10 | 552 | 880 | 223 | 576 | 1.50e-31 | 132 |
| MS.gene67168.t1 | MTR_3g005670 | 28.011 | 357 | 224 | 10 | 552 | 879 | 223 | 575 | 1.97e-31 | 132 |
| MS.gene67168.t1 | MTR_3g005670 | 27.298 | 359 | 222 | 10 | 552 | 879 | 223 | 573 | 2.57e-31 | 131 |
| MS.gene67168.t1 | MTR_3g005670 | 28.280 | 343 | 213 | 10 | 552 | 865 | 223 | 561 | 1.25e-30 | 129 |
| MS.gene67168.t1 | MTR_3g005670 | 27.933 | 358 | 225 | 10 | 552 | 880 | 223 | 576 | 7.96e-30 | 127 |
| MS.gene67168.t1 | MTR_3g005670 | 27.222 | 360 | 223 | 10 | 552 | 880 | 223 | 574 | 1.02e-29 | 126 |
| MS.gene67168.t1 | MTR_2g013130 | 27.978 | 361 | 209 | 11 | 564 | 886 | 116 | 463 | 1.29e-28 | 122 |
| MS.gene67168.t1 | MTR_4g031680 | 28.255 | 361 | 216 | 11 | 553 | 880 | 174 | 524 | 1.69e-28 | 122 |
| MS.gene67168.t1 | MTR_2g013130 | 26.650 | 394 | 221 | 13 | 532 | 886 | 114 | 478 | 1.54e-26 | 115 |
| MS.gene67168.t1 | MTR_2g013130 | 28.526 | 312 | 177 | 8 | 606 | 881 | 9 | 310 | 1.95e-26 | 112 |
| MS.gene67168.t1 | MTR_2g013130 | 28.931 | 318 | 178 | 9 | 606 | 886 | 52 | 358 | 1.74e-23 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67168.t1 | AT2G33435 | 49.773 | 440 | 206 | 7 | 440 | 873 | 710 | 1140 | 9.82e-123 | 409 |
| MS.gene67168.t1 | AT1G60900 | 27.119 | 354 | 203 | 9 | 606 | 933 | 249 | 573 | 6.52e-25 | 111 |
| MS.gene67168.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 211 | 493 | 8.98e-25 | 110 |
| MS.gene67168.t1 | AT4G36690 | 28.374 | 289 | 179 | 7 | 606 | 872 | 233 | 515 | 9.57e-25 | 110 |
| MS.gene67168.t1 | AT4G36690 | 28.929 | 280 | 171 | 7 | 606 | 863 | 233 | 506 | 6.14e-23 | 105 |
| MS.gene67168.t1 | AT4G36690 | 28.674 | 279 | 171 | 7 | 606 | 862 | 233 | 505 | 2.76e-22 | 103 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCCTTAATGTCCTTTC+TGG | 0.074338 | 1.2:+26139238 | None:intergenic |
| ATGGAGATTGCTGGTGTCTT+TGG | 0.211795 | 1.2:-26142488 | MS.gene67168:CDS |
| AGCAAATTCAACATAGTCTT+TGG | 0.212667 | 1.2:+26146134 | None:intergenic |
| TTTGATGGCAGTAAACTATT+TGG | 0.213603 | 1.2:-26146180 | MS.gene67168:CDS |
| CACGGGAATCGAAGAAATTT+TGG | 0.222977 | 1.2:-26139912 | MS.gene67168:CDS |
| TAAGATTCCATCCTTTAAAA+TGG | 0.236439 | 1.2:-26148051 | MS.gene67168:CDS |
| ACTCTAGCTCCTATTTCTTC+TGG | 0.240152 | 1.2:-26146661 | MS.gene67168:CDS |
| TCTTGACCGTCTCCTCTTCA+TGG | 0.255384 | 1.2:+26147374 | None:intergenic |
| TTATGATGTTTATAGATTCT+TGG | 0.260739 | 1.2:+26148071 | None:intergenic |
| TCAGCTGCTCTTTCCTTTGA+TGG | 0.264569 | 1.2:-26146195 | MS.gene67168:CDS |
| TTTGCAGGCATACCTTGTTT+GGG | 0.293827 | 1.2:+26144650 | None:intergenic |
| TCCACCTGTTCCTTTAGAAT+TGG | 0.321515 | 1.2:+26139610 | None:intergenic |
| AGCAGTGGCTTTGCATGCTC+TGG | 0.328489 | 1.2:+26140973 | None:intergenic |
| TTCTCTGGAGAATGCTTAGA+TGG | 0.340468 | 1.2:+26146727 | None:intergenic |
| CATCCAGCACGTTTCTTCTC+TGG | 0.343040 | 1.2:+26146712 | None:intergenic |
| ATAATCTCTTCAAAACTAAA+TGG | 0.343513 | 1.2:+26148206 | None:intergenic |
| AAACACGGTTCGTCCATTTC+AGG | 0.343902 | 1.2:-26139303 | MS.gene67168:CDS |
| AATTCAAAACCAGAAGAAAT+AGG | 0.349700 | 1.2:+26146652 | None:intergenic |
| ATTTAATCCAGCACTTGATT+TGG | 0.353132 | 1.2:+26147911 | None:intergenic |
| GGAAGTATTAACAGTTGTTC+AGG | 0.353180 | 1.2:-26141182 | MS.gene67168:CDS |
| GATAGTAAACCACCATCTTA+TGG | 0.353960 | 1.2:-26141000 | MS.gene67168:CDS |
| TGGTGTCTTTGGATCTTTGA+AGG | 0.354415 | 1.2:-26142477 | MS.gene67168:CDS |
| CCAGAAAAGCCCTCCTGAAA+TGG | 0.361049 | 1.2:+26139290 | None:intergenic |
| TCAAGATAAACCCTTCTCAT+AGG | 0.365121 | 1.2:+26146472 | None:intergenic |
| TGGTTCCAGAAAGGACATTA+AGG | 0.366182 | 1.2:-26139243 | MS.gene67168:CDS |
| GGAACCAACTAATTCTAAAC+TGG | 0.370521 | 1.2:+26139259 | None:intergenic |
| GTCGGGAGCGTGAGGATAGA+AGG | 0.371006 | 1.2:-26146993 | MS.gene67168:CDS |
| GCTTGCAGGTGCATAAAGAT+AGG | 0.374950 | 1.2:-26146257 | MS.gene67168:intron |
| AATTTCAAATCTCGTTTCTT+CGG | 0.377106 | 1.2:-26142668 | MS.gene67168:CDS |
| ATTATTGTCCTTGCAATGTC+TGG | 0.382246 | 1.2:+26139748 | None:intergenic |
| AGTGCTGGATTAAATAATAA+AGG | 0.387810 | 1.2:-26147903 | MS.gene67168:CDS |
| GCAGAGGGTAGAGCAAAATA+TGG | 0.393597 | 1.2:-26147582 | MS.gene67168:CDS |
| TGCCCTTGGTGAAAGAGAAC+GGG | 0.395787 | 1.2:+26147323 | None:intergenic |
| GTTGTCCAGCATGCATGATT+TGG | 0.407879 | 1.2:-26146614 | MS.gene67168:CDS |
| GAGTTGCTTGAAAATGTAAA+AGG | 0.412364 | 1.2:-26148164 | MS.gene67168:CDS |
| TGTAACTCTGGATCATCATT+AGG | 0.413072 | 1.2:+26139389 | None:intergenic |
| CAACTAATGGTTCAAGTAGA+AGG | 0.416034 | 1.2:-26147023 | MS.gene67168:CDS |
| TTTGAAGGCTTACCACTTTG+AGG | 0.418380 | 1.2:-26142462 | MS.gene67168:CDS |
| ACGAAAGATGATTTAATTGA+AGG | 0.421610 | 1.2:-26147963 | MS.gene67168:CDS |
| GACCGTCTCCTCTTCATGGT+TGG | 0.425429 | 1.2:+26147378 | None:intergenic |
| AGAGGGACGAAAGAAGTAAT+TGG | 0.426732 | 1.2:-26148274 | MS.gene67168:CDS |
| GCAAATTCAACATAGTCTTT+GGG | 0.428057 | 1.2:+26146135 | None:intergenic |
| CTCTGAGTCTATACAGAGAA+AGG | 0.429603 | 1.2:-26139067 | MS.gene67168:CDS |
| AATAACCTCTTGCTTTCTTC+CGG | 0.430687 | 1.2:-26146403 | MS.gene67168:CDS |
| TTAGTAACAGTGTGTGTGTC+TGG | 0.432948 | 1.2:+26139671 | None:intergenic |
| AGTAGCCCTGCTAGTGGACT+TGG | 0.433461 | 1.2:-26146802 | MS.gene67168:CDS |
| TTATTCCACGCTTCCTTAGC+AGG | 0.433488 | 1.2:+26148140 | None:intergenic |
| AGCTGCTGATCGACATGCTT+CGG | 0.433768 | 1.2:+26139145 | None:intergenic |
| TACTCCAATTCTAAAGGAAC+AGG | 0.435354 | 1.2:-26139614 | MS.gene67168:CDS |
| CATTCAAGGATGTCCTGATC+AGG | 0.436067 | 1.2:-26139420 | MS.gene67168:CDS |
| TATAATCATGTATTTGAAGA+AGG | 0.438748 | 1.2:-26139194 | MS.gene67168:CDS |
| GGCACATAGAAAGACTTATC+AGG | 0.444800 | 1.2:-26146947 | MS.gene67168:CDS |
| GGCCACATGAATTGATTTAA+CGG | 0.449065 | 1.2:+26139769 | None:intergenic |
| CAACTAATGGTTCAAGTAGA+AGG | 0.449247 | 1.2:-26147200 | MS.gene67168:CDS |
| GGATGGGATCTTCCTCCTGT+AGG | 0.450661 | 1.2:-26146694 | MS.gene67168:CDS |
| AAAGCTTGTGCGGGTTTGAA+TGG | 0.460255 | 1.2:-26141220 | MS.gene67168:CDS |
| CTTGCAGGTGCATAAAGATA+GGG | 0.463742 | 1.2:-26146256 | MS.gene67168:intron |
| CAAAGAGCCAACACAAGTAC+TGG | 0.466512 | 1.2:-26140950 | MS.gene67168:CDS |
| GATGCCAGTTTAGAATTAGT+TGG | 0.467941 | 1.2:-26139263 | MS.gene67168:CDS |
| TTGCCTAGTAGTACCATTCA+AGG | 0.469110 | 1.2:-26139434 | MS.gene67168:CDS |
| TTCTTCCTCTCATAAATGTG+TGG | 0.472735 | 1.2:+26147435 | None:intergenic |
| TCCCTCTCCTTCAAACAGTC+AGG | 0.473777 | 1.2:+26148290 | None:intergenic |
| GGGTTTGAATGGTATGAGCC+TGG | 0.474594 | 1.2:-26141209 | MS.gene67168:CDS |
| GATGGGATCTTCCTCCTGTA+GGG | 0.475215 | 1.2:-26146693 | MS.gene67168:CDS |
| TTGCATAGACGTCTCTTTGA+CGG | 0.476927 | 1.2:-26139116 | MS.gene67168:CDS |
| GAGCAGACCTGACTGTTTGA+AGG | 0.477729 | 1.2:-26148297 | MS.gene67168:CDS |
| TGATACATGGCCGAGTTTGT+TGG | 0.482730 | 1.2:+26146368 | None:intergenic |
| TTAGGTGTATTCCCCTGATC+AGG | 0.484350 | 1.2:+26139407 | None:intergenic |
| ATATGGAAGAGAAATCAATA+AGG | 0.485629 | 1.2:-26147565 | MS.gene67168:CDS |
| CTGGATTAAATAATAAAGGC+TGG | 0.488033 | 1.2:-26147899 | MS.gene67168:CDS |
| ATGGTTGGTTCTTCATAATG+TGG | 0.491501 | 1.2:+26147393 | None:intergenic |
| GAATGTAAGTTCTAGAAAGA+AGG | 0.491771 | 1.2:-26148003 | MS.gene67168:CDS |
| AAATCTCGTTTCTTCGGAGA+TGG | 0.491853 | 1.2:-26142662 | MS.gene67168:intron |
| CAAGTAGAAGGTCAAGAAGT+CGG | 0.491913 | 1.2:-26147011 | MS.gene67168:CDS |
| GCAACTTCCACTGATCTCTC+TGG | 0.493226 | 1.2:+26144703 | None:intergenic |
| AAGTAGAAGGTCAAGAAGTC+GGG | 0.493814 | 1.2:-26147010 | MS.gene67168:CDS |
| TTAATCTCCAGTACTTGTGT+TGG | 0.494093 | 1.2:+26140943 | None:intergenic |
| CATCCTTGAATGGTACTACT+AGG | 0.494514 | 1.2:+26139431 | None:intergenic |
| ACATTTATGAGAGGAAGAAC+AGG | 0.495873 | 1.2:-26147431 | MS.gene67168:CDS |
| CGAAAGATGATTTAATTGAA+GGG | 0.497973 | 1.2:-26147962 | MS.gene67168:CDS |
| TTAGAAACCAAATCAAGTGC+TGG | 0.498284 | 1.2:-26147918 | MS.gene67168:CDS |
| GAGGAGACGGTCAAGAAGTC+GGG | 0.498705 | 1.2:-26147367 | MS.gene67168:CDS |
| TTGCAGGCATACCTTGTTTG+GGG | 0.500090 | 1.2:+26144651 | None:intergenic |
| TAAGTCTTTCTATGTGCCCT+TGG | 0.500562 | 1.2:+26146952 | None:intergenic |
| TAGCCACCAAGTCCACTAGC+AGG | 0.501332 | 1.2:+26146796 | None:intergenic |
| GGCTTACCACTTTGAGGCAA+GGG | 0.501487 | 1.2:-26142456 | MS.gene67168:CDS |
| CTGATGCATCCTCAGCTGTA+AGG | 0.502308 | 1.2:+26146214 | None:intergenic |
| CTTACAATGCAGCTGATACA+TGG | 0.502363 | 1.2:+26146355 | None:intergenic |
| CATGGCAAAGATAGACATGA+TGG | 0.505567 | 1.2:-26147690 | MS.gene67168:CDS |
| TTCTAAAGGAACAGGTGGAA+TGG | 0.507113 | 1.2:-26139606 | MS.gene67168:CDS |
| GAGGAAGAACAGGCAGGAAA+AGG | 0.507384 | 1.2:-26147421 | MS.gene67168:CDS |
| AGAGTAGGATCTGTCCCTAC+AGG | 0.512461 | 1.2:+26146679 | None:intergenic |
| GAAGAAAAGACAAGAGAAGA+GGG | 0.514626 | 1.2:-26147870 | MS.gene67168:CDS |
| TAAGTATTTCTGTTTGCCCT+TGG | 0.515292 | 1.2:+26147309 | None:intergenic |
| AACAGAAATACTTATCAAGA+TGG | 0.516221 | 1.2:-26147300 | MS.gene67168:CDS |
| GGTAGAGGCTTCACGATGGA+TGG | 0.524088 | 1.2:+26146571 | None:intergenic |
| CAAGATAAACCCTTCTCATA+GGG | 0.524873 | 1.2:+26146473 | None:intergenic |
| AGAGAAGAAACGTGCTGGAT+GGG | 0.525166 | 1.2:-26146710 | MS.gene67168:CDS |
| AGCCTCTGAGAAAGTTGTGA+TGG | 0.525404 | 1.2:-26146434 | MS.gene67168:CDS |
| AGAATTAGTTGGTTCCAGAA+AGG | 0.525428 | 1.2:-26139252 | MS.gene67168:CDS |
| GCTACTTACTCCAATTCTAA+AGG | 0.528933 | 1.2:-26139620 | MS.gene67168:CDS |
| GAATGGTATGAGCCTGGGAG+GGG | 0.529449 | 1.2:-26141203 | MS.gene67168:CDS |
| AGCCCTGCTAGTGGACTTGG+TGG | 0.529522 | 1.2:-26146799 | MS.gene67168:CDS |
| GATTCTCTTCCTCTTCATTG+TGG | 0.530005 | 1.2:+26147739 | None:intergenic |
| GGCGGGTAGCATGTGTCAGT+TGG | 0.535324 | 1.2:+26146494 | None:intergenic |
| GTTACTATCAAAGCTTGTGC+GGG | 0.537008 | 1.2:-26141229 | MS.gene67168:CDS |
| TCTTCCTCTCATAAATGTGT+GGG | 0.537581 | 1.2:+26147436 | None:intergenic |
| CAGAGAAGAAACGTGCTGGA+TGG | 0.538719 | 1.2:-26146711 | MS.gene67168:CDS |
| CATTAAGGAAGAAGATGAGG+AGG | 0.538929 | 1.2:-26139228 | MS.gene67168:CDS |
| TGAATCTAGTTTCTCTGAAG+AGG | 0.539721 | 1.2:-26139642 | MS.gene67168:CDS |
| TTGCCCTTGGTGAAAGAGAA+CGG | 0.541173 | 1.2:+26147322 | None:intergenic |
| TAAGGAATTCCACAAGCGCT+TGG | 0.541301 | 1.2:+26146232 | None:intergenic |
| GGACATTAAGGAAGAAGATG+AGG | 0.547317 | 1.2:-26139231 | MS.gene67168:CDS |
| GACCTGACTGTTTGAAGGAG+AGG | 0.547655 | 1.2:-26148292 | MS.gene67168:CDS |
| CTTACCACAGGTGATGCATC+AGG | 0.548034 | 1.2:+26141154 | None:intergenic |
| CACAGAAAAGCTTATCAAGA+TGG | 0.548916 | 1.2:-26147120 | MS.gene67168:CDS |
| ATTCAAGGATGTCCTGATCA+GGG | 0.549232 | 1.2:-26139419 | MS.gene67168:CDS |
| GTGGCTATTCACCAAGGAAG+AGG | 0.549747 | 1.2:-26146780 | MS.gene67168:CDS |
| CTGATCAGGACATCCTTGAA+TGG | 0.551575 | 1.2:+26139421 | None:intergenic |
| AGATAGGGGCCAAGCGCTTG+TGG | 0.552388 | 1.2:-26146241 | MS.gene67168:CDS |
| TCTCCAGAGAAGAAACGTGC+TGG | 0.557279 | 1.2:-26146715 | MS.gene67168:CDS |
| ATTGATGTTGAAAAGACAAT+GGG | 0.558472 | 1.2:-26139344 | MS.gene67168:CDS |
| AATGGAGAAACATGCTTCAG+AGG | 0.558614 | 1.2:-26148033 | MS.gene67168:CDS |
| ACCATGCTATCATGTAACTC+TGG | 0.559494 | 1.2:+26139377 | None:intergenic |
| ACTTTCTCAGAGGCTGAAGC+TGG | 0.559650 | 1.2:+26146442 | None:intergenic |
| GATTCAACAGTAATAGATGC+TGG | 0.559785 | 1.2:-26139467 | MS.gene67168:CDS |
| CTTCGAGCACTTTGTCACCA+TGG | 0.559910 | 1.2:+26139579 | None:intergenic |
| AGAGGAGACGGTCAAGAAGT+CGG | 0.560108 | 1.2:-26147368 | MS.gene67168:CDS |
| TGTGTTGGCTCTTTGAGCAG+TGG | 0.560118 | 1.2:+26140958 | None:intergenic |
| GTCAAGAAGTCGTGAACGCG+AGG | 0.561101 | 1.2:-26147178 | MS.gene67168:CDS |
| AACTACAACATCACTTATTG+TGG | 0.561162 | 1.2:+26144678 | None:intergenic |
| TCCAATTCTAAAGGAACAGG+TGG | 0.562370 | 1.2:-26139611 | MS.gene67168:CDS |
| AGCAGCCAAATCATGCATGC+TGG | 0.562459 | 1.2:+26146609 | None:intergenic |
| AAATAGTTTACTGCCATCAA+AGG | 0.563857 | 1.2:+26146182 | None:intergenic |
| ATGCTACCCGCCCTATGAGA+AGG | 0.563863 | 1.2:-26146483 | MS.gene67168:CDS |
| ATAATGAGCATTACACAGAA+AGG | 0.565395 | 1.2:-26147716 | MS.gene67168:CDS |
| TGTGTCTGGAGTAGGTTCTT+CGG | 0.567361 | 1.2:+26139685 | None:intergenic |
| AGGCTTACCACTTTGAGGCA+AGG | 0.569190 | 1.2:-26142457 | MS.gene67168:CDS |
| TCGAAATGATGATGAAACTC+AGG | 0.569530 | 1.2:-26147502 | MS.gene67168:CDS |
| GCCCCGTTCTCTTTCACCAA+GGG | 0.570207 | 1.2:-26147325 | MS.gene67168:CDS |
| CACGGTTCGTCCATTTCAGG+AGG | 0.571329 | 1.2:-26139300 | MS.gene67168:CDS |
| ATGATGATGAAACTCAGGAC+AGG | 0.573142 | 1.2:-26147497 | MS.gene67168:CDS |
| ATAAACCCTTCTCATAGGGC+GGG | 0.573510 | 1.2:+26146477 | None:intergenic |
| TGCTACCCGCCCTATGAGAA+GGG | 0.574243 | 1.2:-26146482 | MS.gene67168:CDS |
| GTCAAGAAGTCGGGAGCGTG+AGG | 0.575086 | 1.2:-26147001 | MS.gene67168:CDS |
| TGAATGGTATGAGCCTGGGA+GGG | 0.575492 | 1.2:-26141204 | MS.gene67168:CDS |
| GAAGAAGACAAAGATAATGA+TGG | 0.575789 | 1.2:-26139560 | MS.gene67168:CDS |
| TACTATGTCGATATCGTCGA+TGG | 0.575807 | 1.2:+26146821 | None:intergenic |
| GGTTTGAATGGTATGAGCCT+GGG | 0.578635 | 1.2:-26141208 | MS.gene67168:CDS |
| ACGTCTCTTTGACGGCAGAA+TGG | 0.580375 | 1.2:-26139108 | MS.gene67168:CDS |
| CTGACAGAGAAAGCATAGAC+AGG | 0.580633 | 1.2:+26146908 | None:intergenic |
| TGTAGTTGATTCCCCAAACA+AGG | 0.580898 | 1.2:-26144662 | MS.gene67168:intron |
| AAGAAGTAATTGGCGTTCTG+TGG | 0.581589 | 1.2:-26148264 | MS.gene67168:CDS |
| TCATGTGGCCAGACATTGCA+AGG | 0.582086 | 1.2:-26139756 | MS.gene67168:CDS |
| ATGAAGAACCAACCATGAAG+AGG | 0.585069 | 1.2:-26147386 | MS.gene67168:CDS |
| ACTGTCAGTCAGAGAAAGCA+TGG | 0.586818 | 1.2:+26147080 | None:intergenic |
| CTGTTAATACTTCCCCTCCC+AGG | 0.587392 | 1.2:+26141191 | None:intergenic |
| TGCTGACCCTTGCCTCAAAG+TGG | 0.589000 | 1.2:+26142450 | None:intergenic |
| ACCTGACTGTTTGAAGGAGA+GGG | 0.590195 | 1.2:-26148291 | MS.gene67168:CDS |
| AGCCCCGTTCTCTTTCACCA+AGG | 0.591951 | 1.2:-26147326 | MS.gene67168:CDS |
| AAATGTAAAAGGTCCTGCTA+AGG | 0.592273 | 1.2:-26148153 | MS.gene67168:CDS |
| TCTATCATCTTTATCTGACA+CGG | 0.592596 | 1.2:-26139930 | MS.gene67168:CDS |
| TGCTCTGGAATGCCATAAGA+TGG | 0.593271 | 1.2:+26140988 | None:intergenic |
| ATGGCAAAGATAGACATGAT+GGG | 0.594996 | 1.2:-26147689 | MS.gene67168:CDS |
| AAGATACATCAAAATCTGAA+AGG | 0.595408 | 1.2:-26147779 | MS.gene67168:CDS |
| TCCAGAGTTACATGATAGCA+TGG | 0.595493 | 1.2:-26139378 | MS.gene67168:CDS |
| CTATCATCTTTATCTGACAC+GGG | 0.595544 | 1.2:-26139929 | MS.gene67168:CDS |
| TGGCAAAGATAGACATGATG+GGG | 0.596315 | 1.2:-26147688 | MS.gene67168:CDS |
| TGAAGAAAAGACAAGAGAAG+AGG | 0.599567 | 1.2:-26147871 | MS.gene67168:CDS |
| TTGAATGGTATGAGCCTGGG+AGG | 0.600077 | 1.2:-26141205 | MS.gene67168:CDS |
| ATGTGCCCTTGGTGAAAGAG+AGG | 0.600670 | 1.2:+26146963 | None:intergenic |
| AGAGATTCAGATAACAAGCA+TGG | 0.603533 | 1.2:-26147813 | MS.gene67168:CDS |
| TTTGAGGCAAGGGTCAGCAA+TGG | 0.603633 | 1.2:-26142446 | MS.gene67168:CDS |
| GACCGTTAAATCAATTCATG+TGG | 0.604281 | 1.2:-26139771 | MS.gene67168:CDS |
| ACAGTGTGTGTGTCTGGAGT+AGG | 0.604688 | 1.2:+26139677 | None:intergenic |
| AACCAACCATGAAGAGGAGA+CGG | 0.606604 | 1.2:-26147380 | MS.gene67168:CDS |
| CACAAGATGCTCTTGACATG+TGG | 0.608945 | 1.2:+26139493 | None:intergenic |
| GTCAAGAAGTCGGGATCATG+AGG | 0.609418 | 1.2:-26147358 | MS.gene67168:CDS |
| CGACATAGTAGCCCTGCTAG+TGG | 0.609672 | 1.2:-26146808 | MS.gene67168:CDS |
| GGAGAATGCTTAGATGGTGA+AGG | 0.610969 | 1.2:+26146733 | None:intergenic |
| TATTGATGTTGAAAAGACAA+TGG | 0.611873 | 1.2:-26139345 | MS.gene67168:CDS |
| GATAAACCCTTCTCATAGGG+CGG | 0.612497 | 1.2:+26146476 | None:intergenic |
| TGGTGAACCAGAGAGATCAG+TGG | 0.612628 | 1.2:-26144710 | MS.gene67168:CDS |
| TGTGGAATTCCTTACAGCTG+AGG | 0.612965 | 1.2:-26146223 | MS.gene67168:CDS |
| ACAGGTGGAATGGAGTTCCA+TGG | 0.613269 | 1.2:-26139596 | MS.gene67168:CDS |
| TGTTACTATCAAAGCTTGTG+CGG | 0.614885 | 1.2:-26141230 | MS.gene67168:CDS |
| TAAATCATCTTTCGTCACGA+TGG | 0.615304 | 1.2:+26147971 | None:intergenic |
| TGTGCCCTTGGTGAAAGAGA+GGG | 0.616915 | 1.2:+26146964 | None:intergenic |
| AAGACAAGAGAAGAGGGGCG+TGG | 0.617122 | 1.2:-26147864 | MS.gene67168:CDS |
| TTCAAGGATGTCCTGATCAG+GGG | 0.620193 | 1.2:-26139418 | MS.gene67168:CDS |
| AGATAAGCATATCCATGCAG+AGG | 0.625598 | 1.2:-26147598 | MS.gene67168:CDS |
| GTGCCCTTGGTGAAAGAGAG+GGG | 0.627220 | 1.2:+26146965 | None:intergenic |
| CATTACACAGAAAGGAAGCA+TGG | 0.627445 | 1.2:-26147708 | MS.gene67168:CDS |
| AGCCACCAAGTCCACTAGCA+GGG | 0.629194 | 1.2:+26146797 | None:intergenic |
| AAGGTCCTGCTAAGGAAGCG+TGG | 0.629212 | 1.2:-26148145 | MS.gene67168:CDS |
| GATAAGCATATCCATGCAGA+GGG | 0.630334 | 1.2:-26147597 | MS.gene67168:CDS |
| CATAGAAAGACTTATCAGGA+TGG | 0.632216 | 1.2:-26146943 | MS.gene67168:CDS |
| GCGTGGAATAAATCACCTGA+AGG | 0.633959 | 1.2:-26148128 | MS.gene67168:CDS |
| CAATACAGACTCAGAAAACA+CGG | 0.635402 | 1.2:-26139318 | MS.gene67168:CDS |
| ACTATCTGTCAGAGAAAGCA+CGG | 0.636048 | 1.2:+26147260 | None:intergenic |
| CTCAGGACAGGAATGCAATG+AGG | 0.637840 | 1.2:-26147485 | MS.gene67168:CDS |
| TTGTTGGATATGATTTACAC+CGG | 0.638547 | 1.2:+26146384 | None:intergenic |
| TTGCAGGTGCATAAAGATAG+GGG | 0.639374 | 1.2:-26146255 | MS.gene67168:intron |
| ACGGTTCGTCCATTTCAGGA+GGG | 0.639891 | 1.2:-26139299 | MS.gene67168:CDS |
| TTATGAGAGGAAGAACAGGC+AGG | 0.640101 | 1.2:-26147427 | MS.gene67168:CDS |
| GAAGAAATAGGAGCTAGAGT+AGG | 0.640117 | 1.2:+26146664 | None:intergenic |
| GTGAACGCGAGGATAGAAGA+AGG | 0.647217 | 1.2:-26147167 | MS.gene67168:CDS |
| GTAGGATCTGTCCCTACAGG+AGG | 0.648976 | 1.2:+26146682 | None:intergenic |
| TTACACCGGAAGAAAGCAAG+AGG | 0.652037 | 1.2:+26146398 | None:intergenic |
| GCCCTTGGTGAAAGAGAACG+GGG | 0.652802 | 1.2:+26147324 | None:intergenic |
| TGCCCTTGGTGAAAGAGAGG+GGG | 0.657952 | 1.2:+26146966 | None:intergenic |
| ATGTACGATTGGAATGTGCA+AGG | 0.660221 | 1.2:-26139886 | MS.gene67168:intron |
| GGCAAAGATAGACATGATGG+GGG | 0.664242 | 1.2:-26147687 | MS.gene67168:CDS |
| ATCCATCACAACTTTCTCAG+AGG | 0.669505 | 1.2:+26146432 | None:intergenic |
| TAAATCATATCCAACAAACT+CGG | 0.671795 | 1.2:-26146378 | MS.gene67168:CDS |
| ATAACCCACACATTTATGAG+AGG | 0.685858 | 1.2:-26147440 | MS.gene67168:CDS |
| GGGAGCGTGAGGATAGAAGG+AGG | 0.689194 | 1.2:-26146990 | MS.gene67168:CDS |
| CACTGGTAGAGGCTTCACGA+TGG | 0.692309 | 1.2:+26146567 | None:intergenic |
| TATGTCGATATCGTCGATGG+TGG | 0.693966 | 1.2:+26146824 | None:intergenic |
| GACTTGGTGGCTATTCACCA+AGG | 0.697367 | 1.2:-26146786 | MS.gene67168:CDS |
| AAGAAAAGACAAGAGAAGAG+GGG | 0.697944 | 1.2:-26147869 | MS.gene67168:CDS |
| TCTTGCGTACTCAACAAGAA+CGG | 0.698477 | 1.2:+26139169 | None:intergenic |
| TATGCCTGATGCATCACCTG+TGG | 0.720348 | 1.2:-26141158 | MS.gene67168:intron |
| GCAAAGATAGACATGATGGG+GGG | 0.730288 | 1.2:-26147686 | MS.gene67168:CDS |
| TTAATTTGAATAGTTCACAG+TGG | 0.736809 | 1.2:-26139957 | MS.gene67168:intron |
| TCTGGAATGCCATAAGATGG+TGG | 0.747907 | 1.2:+26140991 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 26139055 | 26148321 | 26139055 | ID=MS.gene67168 |
| chr1.2 | mRNA | 26139055 | 26148321 | 26139055 | ID=MS.gene67168.t1;Parent=MS.gene67168 |
| chr1.2 | exon | 26146360 | 26148321 | 26146360 | ID=MS.gene67168.t1.exon1;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26146360 | 26148321 | 26146360 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26146134 | 26146271 | 26146134 | ID=MS.gene67168.t1.exon2;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26146134 | 26146271 | 26146134 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26144663 | 26144734 | 26144663 | ID=MS.gene67168.t1.exon3;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26144663 | 26144734 | 26144663 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26142663 | 26142704 | 26142663 | ID=MS.gene67168.t1.exon4;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26142663 | 26142704 | 26142663 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26142427 | 26142513 | 26142427 | ID=MS.gene67168.t1.exon5;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26142427 | 26142513 | 26142427 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26141159 | 26141266 | 26141159 | ID=MS.gene67168.t1.exon6;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26141159 | 26141266 | 26141159 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26140936 | 26141028 | 26140936 | ID=MS.gene67168.t1.exon7;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26140936 | 26141028 | 26140936 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26139887 | 26139966 | 26139887 | ID=MS.gene67168.t1.exon8;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26139887 | 26139966 | 26139887 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| chr1.2 | exon | 26139055 | 26139799 | 26139055 | ID=MS.gene67168.t1.exon9;Parent=MS.gene67168.t1 |
| chr1.2 | CDS | 26139055 | 26139799 | 26139055 | ID=cds.MS.gene67168.t1;Parent=MS.gene67168.t1 |
| Gene Sequence |
| Protein sequence |
