Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053798.t1 | XP_019432521.1 | 55.1 | 156 | 68 | 2 | 5 | 160 | 37 | 190 | 3.90E-37 | 164.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053798.t1 | Q8W583 | 42.5 | 146 | 51 | 2 | 48 | 161 | 39 | 183 | 6.5e-25 | 115.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053798.t1 | G7K1I9 | 49.2 | 189 | 62 | 3 | 5 | 161 | 20 | 206 | 1.7e-34 | 155.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053798 | MS.gene055359 | 0.820042 | 8.45E-53 | -1.69E-46 |
| MS.gene053798 | MS.gene059632 | 0.80292 | 4.46E-49 | -1.69E-46 |
| MS.gene053798 | MS.gene061336 | 0.800101 | 1.69E-48 | -1.69E-46 |
| MS.gene053798 | MS.gene90334 | 0.81434 | 1.62E-51 | -1.69E-46 |
| MS.gene053798 | MS.gene91805 | 0.818999 | 1.46E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053798.t1 | MTR_5g056390 | 49.198 | 187 | 61 | 3 | 7 | 161 | 22 | 206 | 1.94e-49 | 160 |
| MS.gene053798.t1 | MTR_5g056230 | 45.745 | 188 | 68 | 3 | 5 | 160 | 20 | 205 | 8.65e-45 | 148 |
| MS.gene053798.t1 | MTR_5g056390 | 56.800 | 125 | 52 | 2 | 5 | 129 | 20 | 142 | 1.80e-37 | 127 |
| MS.gene053798.t1 | MTR_5g056300 | 84.746 | 59 | 8 | 1 | 71 | 129 | 5 | 62 | 1.13e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053798.t1 | AT1G68260 | 42.466 | 146 | 51 | 2 | 48 | 161 | 39 | 183 | 1.31e-34 | 121 |
| MS.gene053798.t1 | AT1G68280 | 41.912 | 136 | 46 | 2 | 58 | 161 | 51 | 185 | 6.61e-32 | 114 |
| MS.gene053798.t1 | AT1G35290 | 35.359 | 181 | 71 | 5 | 14 | 162 | 16 | 182 | 1.77e-30 | 110 |
| MS.gene053798.t1 | AT1G35250 | 34.066 | 182 | 74 | 5 | 13 | 162 | 15 | 182 | 3.72e-29 | 107 |
| MS.gene053798.t1 | AT1G35250 | 41.026 | 117 | 55 | 4 | 13 | 129 | 15 | 117 | 2.92e-23 | 90.5 |
| MS.gene053798.t1 | AT1G35250 | 37.226 | 137 | 68 | 5 | 13 | 145 | 15 | 137 | 8.12e-23 | 90.5 |
Find 40 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGAAGTTGGAGATTTAC+TGG | 0.264507 | 5.1:-44767003 | None:intergenic |
| TTGTTGTGACTTACTCTTAG+AGG | 0.306908 | 5.1:-44768990 | None:intergenic |
| ACTTAGTATTAAGGAGTAAT+GGG | 0.359723 | 5.1:-44766968 | None:intergenic |
| CTATCGTCCTGTTAGAATTC+CGG | 0.374728 | 5.1:+44770208 | MS.gene053798:CDS |
| GTGCTCCTGGCTTCCAAGAT+AGG | 0.377070 | 5.1:-44770164 | None:intergenic |
| GCATGTTCGCGATTATGAAT+TGG | 0.386525 | 5.1:+44768384 | MS.gene053798:CDS |
| GAGCATCAGCGTTGTGCTCC+TGG | 0.390293 | 5.1:-44770177 | None:intergenic |
| GCGGAAACGACTTAGTATTA+AGG | 0.403153 | 5.1:-44766977 | None:intergenic |
| AGATCTGCCGGAATTCTAAC+AGG | 0.406014 | 5.1:-44770215 | None:intergenic |
| CTCATGAGTTGTCACCTTGT+TGG | 0.415293 | 5.1:-44768450 | None:intergenic |
| ACCGAACTAACGTCACTTAT+CGG | 0.421323 | 5.1:-44771078 | None:intergenic |
| TTTCTCTCTCGTTGATATCA+TGG | 0.431142 | 5.1:-44767103 | None:intergenic |
| TTAGAGGACCAATGAATTTG+AGG | 0.433000 | 5.1:-44768974 | None:intergenic |
| GCCGATAAGTGACGTTAGTT+CGG | 0.434923 | 5.1:+44771077 | MS.gene053798:CDS |
| AAACTATCCCTCAAATTCAT+TGG | 0.441038 | 5.1:+44768966 | MS.gene053798:CDS |
| CAGAATGAATGATTTCTTTG+AGG | 0.447385 | 5.1:+44768354 | MS.gene053798:intron |
| TAGAGGACCAATGAATTTGA+GGG | 0.463628 | 5.1:-44768973 | None:intergenic |
| GACAGCCTATCTTGGAAGCC+AGG | 0.495074 | 5.1:+44770159 | MS.gene053798:intron |
| GACTTAGTATTAAGGAGTAA+TGG | 0.505746 | 5.1:-44766969 | None:intergenic |
| AATGAATGATTTCTTTGAGG+TGG | 0.510371 | 5.1:+44768357 | MS.gene053798:CDS |
| ATGATATCAACGAGAGAGAA+AGG | 0.513613 | 5.1:+44767105 | MS.gene053798:CDS |
| GTTCTCTGTGTGAGTAATGA+TGG | 0.519040 | 5.1:+44767065 | MS.gene053798:CDS |
| AACTTCTCTGATTCCCTACA+AGG | 0.523006 | 5.1:+44767016 | MS.gene053798:CDS |
| TTGTAGGGAATCAGAGAAGT+TGG | 0.526968 | 5.1:-44767014 | None:intergenic |
| AGGTGAGTTGAATGCCTTGT+AGG | 0.538099 | 5.1:-44767030 | None:intergenic |
| AAGATCATCATCTTAAAGAC+GGG | 0.546299 | 5.1:-44771109 | None:intergenic |
| AAAGATCATCATCTTAAAGA+CGG | 0.547565 | 5.1:-44771110 | None:intergenic |
| CAGAGAACTCTCTTGAATGC+AGG | 0.550505 | 5.1:-44767050 | None:intergenic |
| AACAAGCATAAACAGAATTG+TGG | 0.565386 | 5.1:-44768423 | None:intergenic |
| GATATCATGGAGTGGTAAAG+AGG | 0.567934 | 5.1:-44767090 | None:intergenic |
| GATTATGAATTGGATCAATA+CGG | 0.588032 | 5.1:+44768394 | MS.gene053798:CDS |
| GGTGAGTTGAATGCCTTGTA+GGG | 0.600882 | 5.1:-44767029 | None:intergenic |
| CTCTCGTTGATATCATGGAG+TGG | 0.622914 | 5.1:-44767098 | None:intergenic |
| TTGGAGTCTGATGATGATGA+AGG | 0.631017 | 5.1:+44770973 | MS.gene053798:CDS |
| GTTGGAGATTTACTGGAGAG+CGG | 0.636772 | 5.1:-44766996 | None:intergenic |
| TATGCTTGTTATTGCCAACA+AGG | 0.650339 | 5.1:+44768436 | MS.gene053798:CDS |
| CTTAGTATTAAGGAGTAATG+GGG | 0.653537 | 5.1:-44766967 | None:intergenic |
| TAATGGGGAAAGTAACCCCA+TGG | 0.671575 | 5.1:-44766952 | None:intergenic |
| TGAATTGGATCAATACGGTG+TGG | 0.700307 | 5.1:+44768399 | MS.gene053798:CDS |
| GAACTAACGTCACTTATCGG+CGG | 0.738255 | 5.1:-44771075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTATAATATATAGTT+TGG | - | chr5.1:44770630-44770649 | None:intergenic | 10.0% |
| !! | AATTTATAGTTTATTTAGAT+GGG | - | chr5.1:44769824-44769843 | None:intergenic | 10.0% |
| !! | ATTTATTGAAAAATGATATT+TGG | - | chr5.1:44768667-44768686 | None:intergenic | 10.0% |
| !! | TAAAATATGCAAAATATATA+TGG | - | chr5.1:44769708-44769727 | None:intergenic | 10.0% |
| !!! | ATTAATAACTAATTCTTTTT+TGG | - | chr5.1:44770876-44770895 | None:intergenic | 10.0% |
| !!! | TGAAAATATTTGTTAATATT+TGG | + | chr5.1:44770126-44770145 | MS.gene053798:intron | 10.0% |
| !!! | TTTTCAATAAATTAAACATT+TGG | + | chr5.1:44768675-44768694 | MS.gene053798:intron | 10.0% |
| !!! | TTTTGTTAAAAATTAAAGAA+GGG | + | chr5.1:44769250-44769269 | MS.gene053798:intron | 10.0% |
| !!! | TTTTTGTTAAAAATTAAAGA+AGG | + | chr5.1:44769249-44769268 | MS.gene053798:intron | 10.0% |
| !! | AATAAAACACAATTAAACAA+TGG | - | chr5.1:44770919-44770938 | None:intergenic | 15.0% |
| !! | AATATCCAACAATATAAATA+GGG | - | chr5.1:44770532-44770551 | None:intergenic | 15.0% |
| !! | AGAAAAAATAGTTATTTGTA+AGG | + | chr5.1:44768559-44768578 | MS.gene053798:intron | 15.0% |
| !! | CAATTTATAGTTTATTTAGA+TGG | - | chr5.1:44769825-44769844 | None:intergenic | 15.0% |
| !! | TAATATCCAACAATATAAAT+AGG | - | chr5.1:44770533-44770552 | None:intergenic | 15.0% |
| !! | TTTATATAAATATCTTCATC+AGG | + | chr5.1:44768864-44768883 | MS.gene053798:intron | 15.0% |
| !! | TTTGTTAAAAATTAAAGAAG+GGG | + | chr5.1:44769251-44769270 | MS.gene053798:intron | 15.0% |
| !!! | ATTTTGCATATTTTACAAAT+TGG | + | chr5.1:44769713-44769732 | MS.gene053798:intron | 15.0% |
| !!! | ATTTTTATTTTTTCCTCTTA+TGG | + | chr5.1:44767788-44767807 | MS.gene053798:intron | 15.0% |
| !!! | GATAGTTTATTTTTTTAAGA+AGG | + | chr5.1:44769388-44769407 | MS.gene053798:intron | 15.0% |
| !!! | TAAATACTTTTTTTGACAAA+AGG | - | chr5.1:44769789-44769808 | None:intergenic | 15.0% |
| !!! | TAACTTTTATTTTTCAACAT+AGG | + | chr5.1:44771048-44771067 | MS.gene053798:intron | 15.0% |
| !!! | TCAAATTTTATAAAGTACTA+AGG | - | chr5.1:44769603-44769622 | None:intergenic | 15.0% |
| !!! | TTTAATTGTGTTTTATTGAT+AGG | + | chr5.1:44770922-44770941 | MS.gene053798:intron | 15.0% |
| !! | AAGTCTGAATAATATTTACA+AGG | + | chr5.1:44767248-44767267 | MS.gene053798:intron | 20.0% |
| !! | AAGTTGAAAACTTTAAATTG+TGG | + | chr5.1:44767813-44767832 | MS.gene053798:intron | 20.0% |
| !! | AATAAGTAATGCAAATTGTT+TGG | - | chr5.1:44770380-44770399 | None:intergenic | 20.0% |
| !! | ACGATATAATAAAAGAGTAA+AGG | + | chr5.1:44770410-44770429 | MS.gene053798:intron | 20.0% |
| !! | ATAACTGACATGTATATATA+AGG | - | chr5.1:44767921-44767940 | None:intergenic | 20.0% |
| !! | ATATCCAACAATATAAATAG+GGG | - | chr5.1:44770531-44770550 | None:intergenic | 20.0% |
| !! | ATTATATTACCACAACAAAT+AGG | + | chr5.1:44767182-44767201 | MS.gene053798:intron | 20.0% |
| !! | ATTTCACAATACACTATAAA+TGG | + | chr5.1:44769900-44769919 | MS.gene053798:intron | 20.0% |
| !! | CGATATAATAAAAGAGTAAA+GGG | + | chr5.1:44770411-44770430 | MS.gene053798:intron | 20.0% |
| !! | TTAAAATGACTCATTGTAAT+GGG | + | chr5.1:44769424-44769443 | MS.gene053798:intron | 20.0% |
| !! | TTGGTGAATATATTATATGA+TGG | - | chr5.1:44770656-44770675 | None:intergenic | 20.0% |
| !! | TTTCAAAGATGATAAAACAA+AGG | - | chr5.1:44770111-44770130 | None:intergenic | 20.0% |
| !!! | GATAAATTTTGATCATGAAT+TGG | - | chr5.1:44770753-44770772 | None:intergenic | 20.0% |
| !!! | TATTATTCAGACTTGTTTTT+AGG | - | chr5.1:44767242-44767261 | None:intergenic | 20.0% |
| !!! | TGAATACTTGATAATGAAAA+TGG | - | chr5.1:44770686-44770705 | None:intergenic | 20.0% |
| !!! | TTATTACATTGTGCTATTTT+TGG | - | chr5.1:44767652-44767671 | None:intergenic | 20.0% |
| !!! | TTTAAAATGACTCATTGTAA+TGG | + | chr5.1:44769423-44769442 | MS.gene053798:intron | 20.0% |
| !!! | TTTTAATTGTGATGATATCT+TGG | + | chr5.1:44768914-44768933 | MS.gene053798:CDS | 20.0% |
| ! | AAATAAGCTGTCAATCAAAT+TGG | - | chr5.1:44768521-44768540 | None:intergenic | 25.0% |
| ! | AATCAAGAATGATGATTACT+TGG | + | chr5.1:44768730-44768749 | MS.gene053798:intron | 25.0% |
| ! | ACTTAGTATTAAGGAGTAAT+GGG | - | chr5.1:44766971-44766990 | None:intergenic | 25.0% |
| ! | ACTTTATCTCTCTATTGTTA+TGG | - | chr5.1:44768588-44768607 | None:intergenic | 25.0% |
| ! | AGTCTCTTCAAAAAAAAACA+AGG | - | chr5.1:44767155-44767174 | None:intergenic | 25.0% |
| ! | ATAAATTGCCTAAAATGTCA+AGG | + | chr5.1:44769837-44769856 | MS.gene053798:intron | 25.0% |
| ! | ATCAAGAATGATGATTACTT+GGG | + | chr5.1:44768731-44768750 | MS.gene053798:intron | 25.0% |
| ! | ATTGCAAAGTGACATAAAAT+TGG | + | chr5.1:44768212-44768231 | MS.gene053798:intron | 25.0% |
| ! | CAAAAAAAAACAAGGTTTGT+GGG | - | chr5.1:44767147-44767166 | None:intergenic | 25.0% |
| ! | GATTATGAATTGGATCAATA+CGG | + | chr5.1:44768394-44768413 | MS.gene053798:CDS | 25.0% |
| ! | TAAAATGACTCATTGTAATG+GGG | + | chr5.1:44769425-44769444 | MS.gene053798:intron | 25.0% |
| ! | TATCCAACAATATAAATAGG+GGG | - | chr5.1:44770530-44770549 | None:intergenic | 25.0% |
| ! | TCAAAAAAAAACAAGGTTTG+TGG | - | chr5.1:44767148-44767167 | None:intergenic | 25.0% |
| ! | TGATTGATCATATATAACTC+TGG | + | chr5.1:44767852-44767871 | MS.gene053798:intron | 25.0% |
| ! | TGTATAATGAAGCATAAACA+AGG | - | chr5.1:44767759-44767778 | None:intergenic | 25.0% |
| ! | TTACCAAGTAATAAAGTGAT+AGG | + | chr5.1:44770320-44770339 | MS.gene053798:intron | 25.0% |
| !! | AAAGGTTTGGAATAAATACT+TGG | - | chr5.1:44769771-44769790 | None:intergenic | 25.0% |
| !! | CAATTTTTATCTCTTTGCAA+CGG | + | chr5.1:44770445-44770464 | MS.gene053798:intron | 25.0% |
| !! | CATCAATTCTTAAAAAGCAT+TGG | + | chr5.1:44768891-44768910 | MS.gene053798:CDS | 25.0% |
| !! | TATGTTATCCTTGACATTTT+AGG | - | chr5.1:44769848-44769867 | None:intergenic | 25.0% |
| !! | TTATTACTTGGTAAACGTTT+TGG | - | chr5.1:44770314-44770333 | None:intergenic | 25.0% |
| !! | TTATTTAGATGGGACAATTT+TGG | - | chr5.1:44769814-44769833 | None:intergenic | 25.0% |
| !! | TTGGTAGCTTATAAATGAAA+TGG | - | chr5.1:44770055-44770074 | None:intergenic | 25.0% |
| !! | TTTAAATTTTATCCAGCTCA+TGG | - | chr5.1:44768129-44768148 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTGACAAAAGGTT+TGG | - | chr5.1:44769784-44769803 | None:intergenic | 25.0% |
| !!! | ATACTTGATAATGAAAATGG+TGG | - | chr5.1:44770683-44770702 | None:intergenic | 25.0% |
| !!! | ATGTAAACTTTTTCAACCTT+CGG | + | chr5.1:44768238-44768257 | MS.gene053798:intron | 25.0% |
| AAACTATCCCTCAAATTCAT+TGG | + | chr5.1:44768966-44768985 | MS.gene053798:CDS | 30.0% | |
| AACAAGCATAAACAGAATTG+TGG | - | chr5.1:44768426-44768445 | None:intergenic | 30.0% | |
| AGGGGACGTATAATAAATAA+CGG | + | chr5.1:44769269-44769288 | MS.gene053798:intron | 30.0% | |
| ATCCAACAATATAAATAGGG+GGG | - | chr5.1:44770529-44770548 | None:intergenic | 30.0% | |
| CAAAGGTAAATAGTAAGTGA+TGG | - | chr5.1:44770094-44770113 | None:intergenic | 30.0% | |
| CAGAATGAATGATTTCTTTG+AGG | + | chr5.1:44768354-44768373 | MS.gene053798:intron | 30.0% | |
| CCTAAGAATGTAATACCAAA+CGG | + | chr5.1:44767624-44767643 | MS.gene053798:intron | 30.0% | |
| CTACCTATCACTTTATTACT+TGG | - | chr5.1:44770326-44770345 | None:intergenic | 30.0% | |
| CTCTTAATGTATTTGATGTG+CGG | + | chr5.1:44770274-44770293 | MS.gene053798:intron | 30.0% | |
| CTTAGTATTAAGGAGTAATG+GGG | - | chr5.1:44766970-44766989 | None:intergenic | 30.0% | |
| GAATGTTATATATGATCCGA+AGG | - | chr5.1:44768257-44768276 | None:intergenic | 30.0% | |
| GACTTAGTATTAAGGAGTAA+TGG | - | chr5.1:44766972-44766991 | None:intergenic | 30.0% | |
| TATTATCAGTTCGGATTCAT+TGG | - | chr5.1:44767555-44767574 | None:intergenic | 30.0% | |
| TCAAATCACATTCTTACCTT+CGG | - | chr5.1:44768010-44768029 | None:intergenic | 30.0% | |
| TCACAAAAGTTGTCACTAAA+TGG | + | chr5.1:44768637-44768656 | MS.gene053798:intron | 30.0% | |
| TTAAGTCTCTAACCTTTATG+TGG | - | chr5.1:44767401-44767420 | None:intergenic | 30.0% | |
| TTTAATACTTGCAACCAGAA+TGG | + | chr5.1:44769974-44769993 | MS.gene053798:intron | 30.0% | |
| ! | AATGAATGATTTCTTTGAGG+TGG | + | chr5.1:44768357-44768376 | MS.gene053798:CDS | 30.0% |
| ! | ATTTTAGACTTAAGATCTGC+CGG | - | chr5.1:44770230-44770249 | None:intergenic | 30.0% |
| ! | GGAACAAGTTTACATGTTTT+TGG | + | chr5.1:44770466-44770485 | MS.gene053798:intron | 30.0% |
| ! | GTTCAATTTTACAGGTCATT+TGG | - | chr5.1:44767512-44767531 | None:intergenic | 30.0% |
| ! | TAATGAAAATGGTGGTGAAT+TGG | - | chr5.1:44770675-44770694 | None:intergenic | 30.0% |
| !! | AATTTGTTGGTTAGGATATC+TGG | + | chr5.1:44770002-44770021 | MS.gene053798:intron | 30.0% |
| !! | ATTATGACTTGTTGATTGTG+TGG | - | chr5.1:44770712-44770731 | None:intergenic | 30.0% |
| !! | CATGTTGCTCTTTTAAGAAA+AGG | - | chr5.1:44769527-44769546 | None:intergenic | 30.0% |
| !! | TTTTTCAAAGCAAGAGTTAG+AGG | + | chr5.1:44769176-44769195 | MS.gene053798:intron | 30.0% |
| !!! | TGCTATTTTACTCACTGAAT+TGG | + | chr5.1:44770954-44770973 | MS.gene053798:CDS | 30.0% |
| AAACGATGATTGTCTCTATG+TGG | - | chr5.1:44770777-44770796 | None:intergenic | 35.0% | |
| AAATCACATTCTTACCTTCG+GGG | - | chr5.1:44768008-44768027 | None:intergenic | 35.0% | |
| AAATGGCTTCTGTAACTTTC+AGG | - | chr5.1:44769330-44769349 | None:intergenic | 35.0% | |
| AATGTGTACTAGTGTGAACA+TGG | - | chr5.1:44769682-44769701 | None:intergenic | 35.0% | |
| ACAACTCATGAGTTACTTCT+TGG | + | chr5.1:44768461-44768480 | MS.gene053798:intron | 35.0% | |
| ATCCCCCCTATTTATATTGT+TGG | + | chr5.1:44770524-44770543 | MS.gene053798:intron | 35.0% | |
| ATGATATCAACGAGAGAGAA+AGG | + | chr5.1:44767105-44767124 | MS.gene053798:CDS | 35.0% | |
| ATGTATTTGATGTGCGGATT+AGG | + | chr5.1:44770280-44770299 | MS.gene053798:intron | 35.0% | |
| CAAATCACATTCTTACCTTC+GGG | - | chr5.1:44768009-44768028 | None:intergenic | 35.0% | |
| CAACAAATTTGTCTCCATTC+TGG | - | chr5.1:44769991-44770010 | None:intergenic | 35.0% | |
| CAGAATGGAGACAAATTTGT+TGG | + | chr5.1:44769989-44770008 | MS.gene053798:intron | 35.0% | |
| CCGTTTGGTATTACATTCTT+AGG | - | chr5.1:44767627-44767646 | None:intergenic | 35.0% | |
| CTAACCTTTATGTGGTTGAA+GGG | - | chr5.1:44767393-44767412 | None:intergenic | 35.0% | |
| CTAGAAAACAAAAACGACCA+AGG | - | chr5.1:44769019-44769038 | None:intergenic | 35.0% | |
| CTGTTCGCTAATGTTTCTTA+TGG | + | chr5.1:44769948-44769967 | MS.gene053798:intron | 35.0% | |
| GAAGCATAAACAAGGTTTGT+GGG | - | chr5.1:44767751-44767770 | None:intergenic | 35.0% | |
| GGACGTATAATAAATAACGG+AGG | + | chr5.1:44769272-44769291 | MS.gene053798:intron | 35.0% | |
| GTAAGTCACAACAAAATCCT+TGG | + | chr5.1:44768999-44769018 | MS.gene053798:intron | 35.0% | |
| GTATTACATTCTTAGGTGCA+TGG | - | chr5.1:44767620-44767639 | None:intergenic | 35.0% | |
| GTCAGTTAAGCTACATGAAA+TGG | - | chr5.1:44769347-44769366 | None:intergenic | 35.0% | |
| TAACCTTTATGTGGTTGAAG+GGG | - | chr5.1:44767392-44767411 | None:intergenic | 35.0% | |
| TAGAGGACCAATGAATTTGA+GGG | - | chr5.1:44768976-44768995 | None:intergenic | 35.0% | |
| TCATCGTTTCACAAGGAATT+TGG | + | chr5.1:44770788-44770807 | MS.gene053798:intron | 35.0% | |
| TCTAACCTTTATGTGGTTGA+AGG | - | chr5.1:44767394-44767413 | None:intergenic | 35.0% | |
| TGAAGCATAAACAAGGTTTG+TGG | - | chr5.1:44767752-44767771 | None:intergenic | 35.0% | |
| TTAGAGGACCAATGAATTTG+AGG | - | chr5.1:44768977-44768996 | None:intergenic | 35.0% | |
| TTATAAGCTACCAAACAACG+AGG | + | chr5.1:44770061-44770080 | MS.gene053798:intron | 35.0% | |
| TTGTTGTGACTTACTCTTAG+AGG | - | chr5.1:44768993-44769012 | None:intergenic | 35.0% | |
| TTTCTCTCTCGTTGATATCA+TGG | - | chr5.1:44767106-44767125 | None:intergenic | 35.0% | |
| ! | AGTTGCTTATCTCCTTTTTC+TGG | - | chr5.1:44767299-44767318 | None:intergenic | 35.0% |
| ! | GTTTTCAACTTCACCATAAG+AGG | - | chr5.1:44767804-44767823 | None:intergenic | 35.0% |
| !! | ATTTTGATGACAGCCTATCT+TGG | + | chr5.1:44770151-44770170 | MS.gene053798:intron | 35.0% |
| !! | TAAAATTGAACGCCGATTCT+TGG | + | chr5.1:44767521-44767540 | MS.gene053798:intron | 35.0% |
| !! | TATGCTTGTTATTGCCAACA+AGG | + | chr5.1:44768436-44768455 | MS.gene053798:CDS | 35.0% |
| !! | TGAACACAAGTTTTATGCGA+CGG | - | chr5.1:44768709-44768728 | None:intergenic | 35.0% |
| !! | TGGAGACAAATTTGTTGGTT+AGG | + | chr5.1:44769994-44770013 | MS.gene053798:intron | 35.0% |
| !!! | CTTGGTCGTTTTTGTTTTCT+AGG | + | chr5.1:44769017-44769036 | MS.gene053798:intron | 35.0% |
| !!! | TTTGAGGGATAGTTTTGACA+TGG | - | chr5.1:44768961-44768980 | None:intergenic | 35.0% |
| AACTTCTCTGATTCCCTACA+AGG | + | chr5.1:44767016-44767035 | MS.gene053798:CDS | 40.0% | |
| AAGATGTGCCCTTGAAATTG+AGG | - | chr5.1:44767725-44767744 | None:intergenic | 40.0% | |
| ACCAAAAGGCAACCAGAAAA+AGG | + | chr5.1:44767284-44767303 | MS.gene053798:intron | 40.0% | |
| ACCGAACTAACGTCACTTAT+CGG | - | chr5.1:44771081-44771100 | None:intergenic | 40.0% | |
| ACGATTGTGCCTCAATTTCA+AGG | + | chr5.1:44767713-44767732 | MS.gene053798:intron | 40.0% | |
| AGACAAACAGCTAAGATCTC+AGG | - | chr5.1:44770816-44770835 | None:intergenic | 40.0% | |
| CAGAAAAGTAAGCAACGGTT+AGG | + | chr5.1:44770492-44770511 | MS.gene053798:intron | 40.0% | |
| CAGAGAAGTTGGAGATTTAC+TGG | - | chr5.1:44767006-44767025 | None:intergenic | 40.0% | |
| CCTATGCCTAGAATAGAGAA+CGG | + | chr5.1:44767321-44767340 | MS.gene053798:intron | 40.0% | |
| CGATTGTGCCTCAATTTCAA+GGG | + | chr5.1:44767714-44767733 | MS.gene053798:intron | 40.0% | |
| CTATCGTCCTGTTAGAATTC+CGG | + | chr5.1:44770208-44770227 | MS.gene053798:CDS | 40.0% | |
| CTTAGTCCGTTCTCTATTCT+AGG | - | chr5.1:44767330-44767349 | None:intergenic | 40.0% | |
| CTTTCAGGAACATATGCCAA+CGG | - | chr5.1:44769315-44769334 | None:intergenic | 40.0% | |
| GAGACAATCATCGTTTCACA+AGG | + | chr5.1:44770781-44770800 | MS.gene053798:intron | 40.0% | |
| GATATCATGGAGTGGTAAAG+AGG | - | chr5.1:44767093-44767112 | None:intergenic | 40.0% | |
| GCATGTTCGCGATTATGAAT+TGG | + | chr5.1:44768384-44768403 | MS.gene053798:CDS | 40.0% | |
| GCCAGTCACTATTATCAGTT+CGG | - | chr5.1:44767564-44767583 | None:intergenic | 40.0% | |
| GCGGAAACGACTTAGTATTA+AGG | - | chr5.1:44766980-44766999 | None:intergenic | 40.0% | |
| GGTTGCAGAAAAGTAAGCAA+CGG | + | chr5.1:44770487-44770506 | MS.gene053798:intron | 40.0% | |
| GTTCTCTGTGTGAGTAATGA+TGG | + | chr5.1:44767065-44767084 | MS.gene053798:CDS | 40.0% | |
| TATCAGTTCGGATTCATTGG+TGG | - | chr5.1:44767552-44767571 | None:intergenic | 40.0% | |
| TCCGAACTGATAATAGTGAC+TGG | + | chr5.1:44767560-44767579 | MS.gene053798:intron | 40.0% | |
| TGAATTGGATCAATACGGTG+TGG | + | chr5.1:44768399-44768418 | MS.gene053798:CDS | 40.0% | |
| TGGAAATAGACCTCGTTGTT+TGG | - | chr5.1:44770074-44770093 | None:intergenic | 40.0% | |
| TTGCAACAGTGTGGGAAATT+TGG | - | chr5.1:44767488-44767507 | None:intergenic | 40.0% | |
| TTGGGACACATTATGCTCAA+AGG | + | chr5.1:44768749-44768768 | MS.gene053798:intron | 40.0% | |
| TTGTAGGGAATCAGAGAAGT+TGG | - | chr5.1:44767017-44767036 | None:intergenic | 40.0% | |
| TTTCCCCTTCAACCACATAA+AGG | + | chr5.1:44767386-44767405 | MS.gene053798:intron | 40.0% | |
| ! | CAAAACTTGTTCTATACCGC+AGG | - | chr5.1:44767436-44767455 | None:intergenic | 40.0% |
| ! | GAATCGGCGTTCAATTTTAC+AGG | - | chr5.1:44767520-44767539 | None:intergenic | 40.0% |
| ! | GTTTGGTGATATGTGCATTG+TGG | - | chr5.1:44770613-44770632 | None:intergenic | 40.0% |
| ! | TTAATTTTGTCCACCACCTG+CGG | + | chr5.1:44767417-44767436 | MS.gene053798:intron | 40.0% |
| ! | TTGGAGTCTGATGATGATGA+AGG | + | chr5.1:44770973-44770992 | MS.gene053798:CDS | 40.0% |
| !! | CATTTGGTTTGCAACAGTGT+GGG | - | chr5.1:44767496-44767515 | None:intergenic | 40.0% |
| !! | TCATTTGGTTTGCAACAGTG+TGG | - | chr5.1:44767497-44767516 | None:intergenic | 40.0% |
| !! | TTGGTGGTGTTTCCAAGAAT+CGG | - | chr5.1:44767536-44767555 | None:intergenic | 40.0% |
| !!! | GTGCTATTTTTGGTTCCGTT+TGG | - | chr5.1:44767642-44767661 | None:intergenic | 40.0% |
| !!! | TCCTTTTTCTGGTTGCCTTT+TGG | - | chr5.1:44767288-44767307 | None:intergenic | 40.0% |
| AATCGTGTGTTGGAGGTTGT+GGG | - | chr5.1:44767699-44767718 | None:intergenic | 45.0% | |
| ACATTCTTAGGTGCATGGCT+TGG | - | chr5.1:44767615-44767634 | None:intergenic | 45.0% | |
| AGATCTGCCGGAATTCTAAC+AGG | - | chr5.1:44770218-44770237 | None:intergenic | 45.0% | |
| AGTCTTCCCCTCAATTACCA+TGG | - | chr5.1:44767360-44767379 | None:intergenic | 45.0% | |
| ATTGAGGCACAATCGTGTGT+TGG | - | chr5.1:44767709-44767728 | None:intergenic | 45.0% | |
| CACCAACCATGGTAATTGAG+GGG | + | chr5.1:44767351-44767370 | MS.gene053798:intron | 45.0% | |
| CAGAGAACTCTCTTGAATGC+AGG | - | chr5.1:44767053-44767072 | None:intergenic | 45.0% | |
| CCACCAACCATGGTAATTGA+GGG | + | chr5.1:44767350-44767369 | MS.gene053798:intron | 45.0% | |
| CCGTTCTCTATTCTAGGCAT+AGG | - | chr5.1:44767324-44767343 | None:intergenic | 45.0% | |
| CTCATGAGTTGTCACCTTGT+TGG | - | chr5.1:44768453-44768472 | None:intergenic | 45.0% | |
| CTCTCGTTGATATCATGGAG+TGG | - | chr5.1:44767101-44767120 | None:intergenic | 45.0% | |
| GAACTAACGTCACTTATCGG+CGG | - | chr5.1:44771078-44771097 | None:intergenic | 45.0% | |
| GACTAGAGACTTACAACCGT+TGG | + | chr5.1:44769296-44769315 | MS.gene053798:intron | 45.0% | |
| GCCGATAAGTGACGTTAGTT+CGG | + | chr5.1:44771077-44771096 | MS.gene053798:CDS | 45.0% | |
| GTTGGAGATTTACTGGAGAG+CGG | - | chr5.1:44766999-44767018 | None:intergenic | 45.0% | |
| TTCCCCTCAATTACCATGGT+TGG | - | chr5.1:44767356-44767375 | None:intergenic | 45.0% | |
| ! | AACTTGTTCTATACCGCAGG+TGG | - | chr5.1:44767433-44767452 | None:intergenic | 45.0% |
| ! | AGGTGAGTTGAATGCCTTGT+AGG | - | chr5.1:44767033-44767052 | None:intergenic | 45.0% |
| ! | GCAAACACCAAAGCACCAAA+AGG | + | chr5.1:44767270-44767289 | MS.gene053798:intron | 45.0% |
| ! | GGTGAGTTGAATGCCTTGTA+GGG | - | chr5.1:44767032-44767051 | None:intergenic | 45.0% |
| !! | AGGTAGAGTATCGTATCCAC+AGG | + | chr5.1:44770340-44770359 | MS.gene053798:intron | 45.0% |
| !!! | TTTTTAAATAATAAAAACTA+AGG | + | chr5.1:44769199-44769218 | MS.gene053798:intron | 5.0% |
| AAATAGGCCTTCCTCGCACA+AGG | + | chr5.1:44767198-44767217 | MS.gene053798:intron | 50.0% | |
| ATCGTGTGTTGGAGGTTGTG+GGG | - | chr5.1:44767698-44767717 | None:intergenic | 50.0% | |
| CAATCGTGTGTTGGAGGTTG+TGG | - | chr5.1:44767700-44767719 | None:intergenic | 50.0% | |
| CCAGCTCATGGTGTCCTTAT+GGG | - | chr5.1:44768117-44768136 | None:intergenic | 50.0% | |
| CCCTCAATTACCATGGTTGG+TGG | - | chr5.1:44767353-44767372 | None:intergenic | 50.0% | |
| GAGATACTTAGCTTCCCCGA+AGG | + | chr5.1:44767991-44768010 | MS.gene053798:intron | 50.0% | |
| GCCACCAACCATGGTAATTG+AGG | + | chr5.1:44767349-44767368 | MS.gene053798:intron | 50.0% | |
| GGACGAAACGACAATTCCTG+TGG | - | chr5.1:44770359-44770378 | None:intergenic | 50.0% | |
| TCCAGCTCATGGTGTCCTTA+TGG | - | chr5.1:44768118-44768137 | None:intergenic | 50.0% | |
| TCCTCGCACAAGGTGTACAA+AGG | + | chr5.1:44767208-44767227 | MS.gene053798:intron | 50.0% | |
| TCCTTTGTACACCTTGTGCG+AGG | - | chr5.1:44767212-44767231 | None:intergenic | 50.0% | |
| TTGTACACCTTGTGCGAGGA+AGG | - | chr5.1:44767208-44767227 | None:intergenic | 50.0% | |
| TTGTTCTATACCGCAGGTGG+TGG | - | chr5.1:44767430-44767449 | None:intergenic | 50.0% | |
| ! | CGAGGAAGGCCTATTTGTTG+TGG | - | chr5.1:44767194-44767213 | None:intergenic | 50.0% |
| !!! | CTGGTTGCCTTTTGGTGCTT+TGG | - | chr5.1:44767280-44767299 | None:intergenic | 50.0% |
| CCCATAAGGACACCATGAGC+TGG | + | chr5.1:44768114-44768133 | MS.gene053798:intron | 55.0% | |
| GACAGCCTATCTTGGAAGCC+AGG | + | chr5.1:44770159-44770178 | MS.gene053798:intron | 55.0% | |
| GAGGCACAATCGTGTGTTGG+AGG | - | chr5.1:44767706-44767725 | None:intergenic | 55.0% | |
| GTGCTCCTGGCTTCCAAGAT+AGG | - | chr5.1:44770167-44770186 | None:intergenic | 55.0% | |
| TCGAGTCAGCGTGACCCATA+AGG | + | chr5.1:44768100-44768119 | MS.gene053798:intron | 55.0% | |
| ! | ACGGACTAAGCCACCAACCA+TGG | + | chr5.1:44767340-44767359 | MS.gene053798:intron | 55.0% |
| !! | TGCATGGCTTGGCTTGTCTG+CGG | - | chr5.1:44767604-44767623 | None:intergenic | 55.0% |
| GAGCATCAGCGTTGTGCTCC+TGG | - | chr5.1:44770180-44770199 | None:intergenic | 60.0% | |
| GTGTGTTGGAGGTTGTGGGG+AGG | - | chr5.1:44767695-44767714 | None:intergenic | 60.0% | |
| TAGTGACTGGCAGCATCGCG+AGG | + | chr5.1:44767573-44767592 | MS.gene053798:intron | 60.0% | |
| TGTTGGAGGTTGTGGGGAGG+TGG | - | chr5.1:44767692-44767711 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 44766954 | 44771119 | 44766954 | ID=MS.gene053798 |
| chr5.1 | mRNA | 44766954 | 44771119 | 44766954 | ID=MS.gene053798.t1;Parent=MS.gene053798 |
| chr5.1 | exon | 44766954 | 44767126 | 44766954 | ID=MS.gene053798.t1.exon1;Parent=MS.gene053798.t1 |
| chr5.1 | CDS | 44766954 | 44767126 | 44766954 | ID=cds.MS.gene053798.t1;Parent=MS.gene053798.t1 |
| chr5.1 | exon | 44768357 | 44768457 | 44768357 | ID=MS.gene053798.t1.exon2;Parent=MS.gene053798.t1 |
| chr5.1 | CDS | 44768357 | 44768457 | 44768357 | ID=cds.MS.gene053798.t1;Parent=MS.gene053798.t1 |
| chr5.1 | exon | 44768886 | 44768998 | 44768886 | ID=MS.gene053798.t1.exon3;Parent=MS.gene053798.t1 |
| chr5.1 | CDS | 44768886 | 44768998 | 44768886 | ID=cds.MS.gene053798.t1;Parent=MS.gene053798.t1 |
| chr5.1 | exon | 44770164 | 44770269 | 44770164 | ID=MS.gene053798.t1.exon4;Parent=MS.gene053798.t1 |
| chr5.1 | CDS | 44770164 | 44770269 | 44770164 | ID=cds.MS.gene053798.t1;Parent=MS.gene053798.t1 |
| chr5.1 | exon | 44770944 | 44770994 | 44770944 | ID=MS.gene053798.t1.exon5;Parent=MS.gene053798.t1 |
| chr5.1 | CDS | 44770944 | 44770994 | 44770944 | ID=cds.MS.gene053798.t1;Parent=MS.gene053798.t1 |
| chr5.1 | exon | 44771070 | 44771119 | 44771070 | ID=MS.gene053798.t1.exon6;Parent=MS.gene053798.t1 |
| chr5.1 | CDS | 44771070 | 44771119 | 44771070 | ID=cds.MS.gene053798.t1;Parent=MS.gene053798.t1 |
| Gene Sequence |
| Protein sequence |
