Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91805.t1 | XP_013443753.1 | 95.5 | 444 | 20 | 0 | 1 | 444 | 1 | 444 | 1.20E-254 | 888.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91805.t1 | Q9SD53 | 26.1 | 441 | 270 | 11 | 19 | 433 | 38 | 448 | 2.6e-29 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91805.t1 | A0A072TLP8 | 95.5 | 444 | 20 | 0 | 1 | 444 | 1 | 444 | 8.3e-255 | 888.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene91805 | 0.819725 | 9.99E-53 | -1.69E-46 |
| MS.gene050100 | MS.gene91805 | 0.834159 | 3.52E-56 | -1.69E-46 |
| MS.gene050563 | MS.gene91805 | 0.859041 | 5.44E-63 | -1.69E-46 |
| MS.gene050584 | MS.gene91805 | 0.806926 | 6.49E-50 | -1.69E-46 |
| MS.gene050587 | MS.gene91805 | 0.804388 | 2.21E-49 | -1.69E-46 |
| MS.gene05143 | MS.gene91805 | 0.842573 | 2.38E-58 | -1.69E-46 |
| MS.gene051789 | MS.gene91805 | 0.819565 | 1.09E-52 | -1.69E-46 |
| MS.gene052142 | MS.gene91805 | 0.87631 | 1.55E-68 | -1.69E-46 |
| MS.gene052187 | MS.gene91805 | 0.894315 | 2.77E-75 | -1.69E-46 |
| MS.gene052456 | MS.gene91805 | 0.836406 | 9.53E-57 | -1.69E-46 |
| MS.gene052698 | MS.gene91805 | 0.832794 | 7.71E-56 | -1.69E-46 |
| MS.gene053074 | MS.gene91805 | 0.857044 | 2.13E-62 | -1.69E-46 |
| MS.gene053383 | MS.gene91805 | 0.893853 | 4.27E-75 | -1.69E-46 |
| MS.gene053798 | MS.gene91805 | 0.818999 | 1.46E-52 | -1.69E-46 |
| MS.gene05456 | MS.gene91805 | 0.835173 | 1.96E-56 | -1.69E-46 |
| MS.gene054596 | MS.gene91805 | 0.809518 | 1.82E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene91805 | 0.954993 | 8.41E-113 | -1.69E-46 |
| MS.gene058168 | MS.gene91805 | 0.829068 | 6.33E-55 | -1.69E-46 |
| MS.gene058918 | MS.gene91805 | 0.818912 | 1.53E-52 | -1.69E-46 |
| MS.gene059006 | MS.gene91805 | 0.856319 | 3.49E-62 | -1.69E-46 |
| MS.gene059632 | MS.gene91805 | 0.866668 | 2.41E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91807 | MS.gene91805 | PPI |
| MS.gene055354 | MS.gene91805 | PPI |
| MS.gene022559 | MS.gene91805 | PPI |
| MS.gene91805 | MS.gene055359 | PPI |
| MS.gene91805 | MS.gene022562 | PPI |
| MS.gene91805 | MS.gene91808 | PPI |
| MS.gene91805 | MS.gene38854 | PPI |
| MS.gene061336 | MS.gene91805 | PPI |
| MS.gene055356 | MS.gene91805 | PPI |
| MS.gene91805 | MS.gene061337 | PPI |
| MS.gene91805 | MS.gene061334 | PPI |
| MS.gene91805 | MS.gene055358 | PPI |
| MS.gene91805 | MS.gene055357 | PPI |
| MS.gene91805 | MS.gene022560 | PPI |
| MS.gene91805 | MS.gene91809 | PPI |
| MS.gene91805 | MS.gene022561 | PPI |
| MS.gene91805 | MS.gene061335 | PPI |
| MS.gene91805 | MS.gene91806 | PPI |
| MS.gene019468 | MS.gene91805 | PPI |
| MS.gene91806 | MS.gene91805 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91805.t1 | MTR_8g005235 | 95.495 | 444 | 20 | 0 | 1 | 444 | 1 | 444 | 0.0 | 889 |
| MS.gene91805.t1 | MTR_8g005325 | 79.101 | 445 | 92 | 1 | 1 | 444 | 30 | 474 | 0.0 | 744 |
| MS.gene91805.t1 | MTR_8g006525 | 77.011 | 435 | 88 | 3 | 2 | 436 | 3 | 425 | 0.0 | 684 |
| MS.gene91805.t1 | MTR_0209s0060 | 76.092 | 435 | 88 | 4 | 3 | 436 | 5 | 424 | 0.0 | 672 |
| MS.gene91805.t1 | MTR_0209s0030 | 76.092 | 435 | 88 | 4 | 3 | 436 | 5 | 424 | 0.0 | 672 |
| MS.gene91805.t1 | MTR_8g005295 | 50.699 | 501 | 175 | 9 | 9 | 444 | 19 | 512 | 9.17e-163 | 469 |
| MS.gene91805.t1 | MTR_8g005285 | 51.753 | 485 | 180 | 9 | 9 | 444 | 19 | 498 | 1.48e-159 | 460 |
| MS.gene91805.t1 | MTR_8g005265 | 52.765 | 434 | 183 | 9 | 26 | 442 | 26 | 454 | 3.70e-150 | 435 |
| MS.gene91805.t1 | MTR_8g005225 | 50.679 | 442 | 202 | 6 | 12 | 442 | 22 | 458 | 6.07e-143 | 417 |
| MS.gene91805.t1 | MTR_4g112660 | 41.190 | 437 | 153 | 12 | 26 | 441 | 5 | 358 | 4.38e-93 | 285 |
| MS.gene91805.t1 | MTR_6g011050 | 33.488 | 430 | 241 | 13 | 3 | 426 | 4 | 394 | 2.98e-64 | 213 |
| MS.gene91805.t1 | MTR_0024s0080 | 34.074 | 405 | 222 | 12 | 28 | 426 | 26 | 391 | 3.98e-64 | 212 |
| MS.gene91805.t1 | MTR_6g009590 | 33.645 | 428 | 233 | 17 | 12 | 426 | 7 | 396 | 5.79e-64 | 212 |
| MS.gene91805.t1 | MTR_6g011060 | 32.960 | 446 | 245 | 14 | 4 | 432 | 2 | 410 | 2.65e-63 | 211 |
| MS.gene91805.t1 | MTR_3g107590 | 34.803 | 431 | 240 | 11 | 6 | 425 | 5 | 405 | 1.60e-61 | 206 |
| MS.gene91805.t1 | MTR_6g010920 | 32.464 | 422 | 239 | 13 | 21 | 434 | 19 | 402 | 4.25e-61 | 204 |
| MS.gene91805.t1 | MTR_6g010890 | 32.207 | 444 | 250 | 17 | 9 | 433 | 7 | 418 | 4.99e-61 | 204 |
| MS.gene91805.t1 | MTR_6g009610 | 34.033 | 429 | 230 | 17 | 9 | 426 | 10 | 396 | 1.16e-60 | 203 |
| MS.gene91805.t1 | MTR_3g079390 | 31.403 | 449 | 246 | 15 | 14 | 433 | 27 | 442 | 3.59e-58 | 197 |
| MS.gene91805.t1 | MTR_6g010810 | 32.787 | 427 | 239 | 14 | 17 | 433 | 12 | 400 | 3.39e-57 | 194 |
| MS.gene91805.t1 | MTR_6g009170 | 32.311 | 424 | 239 | 13 | 17 | 425 | 15 | 405 | 5.62e-57 | 194 |
| MS.gene91805.t1 | MTR_2g041180 | 29.561 | 433 | 266 | 15 | 11 | 434 | 39 | 441 | 1.67e-48 | 173 |
| MS.gene91805.t1 | MTR_2g036320 | 28.606 | 409 | 268 | 10 | 28 | 432 | 68 | 456 | 1.98e-45 | 165 |
| MS.gene91805.t1 | MTR_5g016570 | 27.253 | 455 | 252 | 12 | 12 | 417 | 79 | 503 | 2.54e-40 | 151 |
| MS.gene91805.t1 | MTR_6g010850 | 31.579 | 361 | 189 | 14 | 97 | 443 | 33 | 349 | 6.79e-39 | 144 |
| MS.gene91805.t1 | MTR_2g035640 | 30.769 | 377 | 216 | 10 | 64 | 432 | 1 | 340 | 8.02e-39 | 144 |
| MS.gene91805.t1 | MTR_5g086340 | 25.874 | 429 | 267 | 12 | 24 | 433 | 29 | 425 | 1.68e-34 | 134 |
| MS.gene91805.t1 | MTR_7g011980 | 34.389 | 221 | 116 | 6 | 222 | 434 | 136 | 335 | 1.92e-30 | 120 |
| MS.gene91805.t1 | MTR_7g011980 | 31.953 | 169 | 78 | 6 | 3 | 169 | 4 | 137 | 4.64e-15 | 76.6 |
| MS.gene91805.t1 | MTR_6g009580 | 34.597 | 211 | 111 | 5 | 221 | 425 | 30 | 219 | 3.08e-29 | 114 |
| MS.gene91805.t1 | MTR_8g042830 | 24.619 | 459 | 242 | 12 | 7 | 432 | 18 | 405 | 3.32e-27 | 113 |
| MS.gene91805.t1 | MTR_7g060840 | 25.219 | 456 | 283 | 16 | 3 | 434 | 5 | 426 | 7.84e-25 | 106 |
| MS.gene91805.t1 | MTR_7g060260 | 26.066 | 422 | 267 | 13 | 9 | 417 | 14 | 403 | 1.39e-24 | 105 |
| MS.gene91805.t1 | MTR_7g060310 | 23.506 | 502 | 284 | 13 | 3 | 432 | 6 | 479 | 3.77e-24 | 105 |
| MS.gene91805.t1 | MTR_7g060320 | 24.550 | 444 | 284 | 14 | 9 | 417 | 14 | 441 | 3.21e-22 | 99.0 |
| MS.gene91805.t1 | MTR_7g446270 | 24.678 | 466 | 280 | 16 | 10 | 417 | 9 | 461 | 9.37e-22 | 97.8 |
| MS.gene91805.t1 | MTR_7g059540 | 23.810 | 483 | 285 | 14 | 3 | 432 | 6 | 458 | 2.50e-21 | 96.7 |
| MS.gene91805.t1 | MTR_7g059540 | 23.471 | 507 | 267 | 16 | 3 | 432 | 5 | 467 | 7.25e-21 | 95.1 |
| MS.gene91805.t1 | MTR_6g009600 | 36.129 | 155 | 74 | 6 | 244 | 394 | 17 | 150 | 8.62e-21 | 89.0 |
| MS.gene91805.t1 | MTR_5g087580 | 28.495 | 186 | 112 | 2 | 249 | 433 | 42 | 207 | 2.23e-20 | 89.7 |
| MS.gene91805.t1 | MTR_7g060115 | 26.010 | 396 | 233 | 15 | 41 | 398 | 41 | 414 | 2.38e-20 | 93.6 |
| MS.gene91805.t1 | MTR_7g060020 | 25.163 | 461 | 268 | 20 | 10 | 434 | 9 | 428 | 2.50e-20 | 93.2 |
| MS.gene91805.t1 | MTR_5g086230 | 33.333 | 183 | 104 | 5 | 1 | 173 | 7 | 181 | 2.76e-19 | 86.3 |
| MS.gene91805.t1 | MTR_8g042170 | 25.339 | 442 | 274 | 14 | 29 | 432 | 26 | 449 | 3.55e-19 | 90.1 |
| MS.gene91805.t1 | MTR_7g059510 | 24.454 | 458 | 249 | 15 | 12 | 434 | 20 | 415 | 5.43e-19 | 89.0 |
| MS.gene91805.t1 | MTR_7g059520 | 28.889 | 180 | 106 | 4 | 250 | 428 | 5 | 163 | 2.63e-18 | 82.8 |
| MS.gene91805.t1 | MTR_7g059810 | 25.185 | 405 | 250 | 11 | 41 | 417 | 42 | 421 | 2.68e-18 | 87.4 |
| MS.gene91805.t1 | MTR_7g060220 | 24.874 | 398 | 247 | 11 | 44 | 417 | 44 | 413 | 4.41e-18 | 86.7 |
| MS.gene91805.t1 | MTR_8g037923 | 25.000 | 456 | 266 | 17 | 29 | 432 | 31 | 462 | 2.15e-17 | 84.7 |
| MS.gene91805.t1 | MTR_7g060370 | 24.711 | 433 | 243 | 15 | 41 | 417 | 42 | 447 | 3.43e-17 | 84.0 |
| MS.gene91805.t1 | MTR_7g060080 | 28.365 | 208 | 126 | 4 | 233 | 435 | 1 | 190 | 5.16e-17 | 79.7 |
| MS.gene91805.t1 | MTR_5g086260 | 29.381 | 194 | 115 | 4 | 250 | 441 | 136 | 309 | 6.59e-17 | 81.6 |
| MS.gene91805.t1 | MTR_7g059525 | 25.926 | 189 | 123 | 2 | 245 | 432 | 103 | 275 | 1.88e-16 | 79.7 |
| MS.gene91805.t1 | MTR_7g060160 | 26.178 | 382 | 200 | 15 | 41 | 397 | 41 | 365 | 1.91e-16 | 81.3 |
| MS.gene91805.t1 | MTR_8g037920 | 24.703 | 421 | 255 | 16 | 48 | 432 | 7 | 401 | 2.00e-16 | 81.3 |
| MS.gene91805.t1 | MTR_0182s0060 | 29.891 | 184 | 111 | 4 | 250 | 432 | 342 | 508 | 7.18e-16 | 80.1 |
| MS.gene91805.t1 | MTR_7g059480 | 29.577 | 142 | 99 | 1 | 292 | 432 | 624 | 765 | 4.99e-15 | 77.8 |
| MS.gene91805.t1 | MTR_3g107600 | 27.358 | 212 | 102 | 6 | 221 | 426 | 406 | 571 | 5.40e-15 | 77.8 |
| MS.gene91805.t1 | MTR_4g009340 | 31.677 | 161 | 94 | 6 | 27 | 175 | 42 | 198 | 7.70e-14 | 73.9 |
| MS.gene91805.t1 | MTR_4g009340 | 26.286 | 175 | 109 | 3 | 245 | 418 | 373 | 528 | 2.46e-11 | 66.2 |
| MS.gene91805.t1 | MTR_4g009590 | 27.523 | 218 | 139 | 7 | 27 | 232 | 42 | 252 | 3.90e-13 | 71.6 |
| MS.gene91805.t1 | MTR_4g009620 | 32.919 | 161 | 91 | 7 | 27 | 175 | 42 | 197 | 4.77e-13 | 71.6 |
| MS.gene91805.t1 | MTR_3g466740 | 25.258 | 388 | 228 | 15 | 29 | 379 | 32 | 394 | 1.18e-12 | 70.1 |
| MS.gene91805.t1 | MTR_7g017620 | 30.534 | 131 | 89 | 2 | 302 | 431 | 401 | 530 | 2.84e-12 | 68.9 |
| MS.gene91805.t1 | MTR_0067s0010 | 24.173 | 393 | 220 | 16 | 29 | 379 | 45 | 401 | 6.62e-12 | 67.8 |
| MS.gene91805.t1 | MTR_2g036310 | 31.061 | 132 | 89 | 1 | 303 | 432 | 19 | 150 | 1.78e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91805.t1 | AT2G28580 | 33.949 | 433 | 227 | 12 | 27 | 433 | 41 | 440 | 6.17e-65 | 216 |
| MS.gene91805.t1 | AT2G28580 | 33.949 | 433 | 227 | 12 | 27 | 433 | 123 | 522 | 2.48e-64 | 216 |
| MS.gene91805.t1 | AT2G28580 | 33.871 | 434 | 228 | 12 | 27 | 434 | 109 | 509 | 2.74e-64 | 216 |
| MS.gene91805.t1 | AT2G44930 | 33.482 | 448 | 230 | 12 | 24 | 435 | 75 | 490 | 1.25e-63 | 214 |
| MS.gene91805.t1 | AT2G28580 | 33.729 | 421 | 227 | 12 | 27 | 433 | 109 | 491 | 2.68e-62 | 210 |
| MS.gene91805.t1 | AT2G28580 | 33.729 | 421 | 227 | 12 | 27 | 433 | 123 | 505 | 4.01e-62 | 210 |
| MS.gene91805.t1 | AT1G67150 | 29.833 | 419 | 251 | 7 | 28 | 433 | 7 | 395 | 2.20e-53 | 184 |
| MS.gene91805.t1 | AT1G67150 | 29.833 | 419 | 251 | 7 | 28 | 433 | 7 | 395 | 2.20e-53 | 184 |
| MS.gene91805.t1 | AT1G67150 | 29.551 | 423 | 251 | 7 | 28 | 433 | 7 | 399 | 7.64e-53 | 182 |
| MS.gene91805.t1 | AT3G50150 | 28.043 | 460 | 268 | 13 | 4 | 434 | 70 | 495 | 3.03e-48 | 172 |
| MS.gene91805.t1 | AT4G31980 | 29.177 | 401 | 247 | 11 | 26 | 422 | 292 | 659 | 3.41e-48 | 175 |
| MS.gene91805.t1 | AT3G50160 | 28.471 | 425 | 252 | 9 | 22 | 432 | 99 | 485 | 1.54e-46 | 168 |
| MS.gene91805.t1 | AT1G67150 | 28.230 | 418 | 216 | 9 | 28 | 433 | 7 | 352 | 3.27e-46 | 164 |
| MS.gene91805.t1 | AT3G50170 | 26.797 | 459 | 280 | 9 | 4 | 433 | 93 | 524 | 8.06e-46 | 167 |
| MS.gene91805.t1 | AT5G11290 | 26.714 | 423 | 277 | 9 | 14 | 432 | 18 | 411 | 1.00e-45 | 164 |
| MS.gene91805.t1 | AT3G50140 | 26.856 | 458 | 281 | 11 | 5 | 434 | 94 | 525 | 2.05e-45 | 166 |
| MS.gene91805.t1 | AT2G36430 | 28.288 | 403 | 253 | 12 | 25 | 417 | 43 | 419 | 7.48e-44 | 159 |
| MS.gene91805.t1 | AT1G65985 | 30.626 | 431 | 238 | 12 | 28 | 417 | 15 | 425 | 8.32e-44 | 159 |
| MS.gene91805.t1 | AT1G65985 | 30.626 | 431 | 238 | 12 | 28 | 417 | 15 | 425 | 8.32e-44 | 159 |
| MS.gene91805.t1 | AT3G50120 | 28.043 | 460 | 267 | 14 | 12 | 432 | 81 | 515 | 1.69e-43 | 160 |
| MS.gene91805.t1 | AT2G28580 | 33.520 | 358 | 179 | 12 | 27 | 358 | 123 | 447 | 2.59e-43 | 159 |
| MS.gene91805.t1 | AT3G47210 | 30.521 | 403 | 222 | 13 | 19 | 401 | 85 | 449 | 1.36e-42 | 157 |
| MS.gene91805.t1 | AT3G50180 | 27.902 | 448 | 271 | 12 | 4 | 432 | 158 | 572 | 2.44e-41 | 155 |
| MS.gene91805.t1 | AT5G22540 | 27.845 | 413 | 240 | 12 | 27 | 417 | 31 | 407 | 2.44e-40 | 150 |
| MS.gene91805.t1 | AT3G50130 | 28.090 | 445 | 259 | 14 | 4 | 417 | 119 | 533 | 6.13e-40 | 151 |
| MS.gene91805.t1 | AT5G22550 | 26.949 | 449 | 271 | 13 | 27 | 434 | 44 | 476 | 8.55e-38 | 144 |
| MS.gene91805.t1 | AT3G47250 | 25.169 | 445 | 271 | 11 | 19 | 433 | 53 | 465 | 1.85e-37 | 142 |
| MS.gene91805.t1 | AT3G47250 | 25.169 | 445 | 271 | 11 | 19 | 433 | 53 | 465 | 1.85e-37 | 142 |
| MS.gene91805.t1 | AT3G47250 | 25.169 | 445 | 271 | 11 | 19 | 433 | 53 | 465 | 1.85e-37 | 142 |
| MS.gene91805.t1 | AT3G47200 | 26.185 | 443 | 269 | 13 | 19 | 434 | 38 | 449 | 9.94e-37 | 140 |
| MS.gene91805.t1 | AT3G47200 | 26.185 | 443 | 269 | 13 | 19 | 434 | 38 | 449 | 9.94e-37 | 140 |
| MS.gene91805.t1 | AT3G50190 | 26.386 | 451 | 259 | 13 | 5 | 432 | 77 | 477 | 2.75e-35 | 137 |
| MS.gene91805.t1 | AT5G11290 | 25.664 | 339 | 223 | 7 | 96 | 432 | 31 | 342 | 3.79e-31 | 123 |
| MS.gene91805.t1 | AT3G44710 | 24.672 | 458 | 293 | 14 | 20 | 433 | 40 | 489 | 1.52e-28 | 118 |
| MS.gene91805.t1 | AT3G60470 | 34.034 | 238 | 108 | 7 | 21 | 227 | 26 | 245 | 1.56e-26 | 112 |
| MS.gene91805.t1 | AT3G60470 | 29.508 | 244 | 130 | 7 | 199 | 433 | 317 | 527 | 2.66e-23 | 102 |
| MS.gene91805.t1 | AT5G22550 | 24.664 | 446 | 236 | 15 | 27 | 434 | 44 | 427 | 2.08e-25 | 108 |
| MS.gene91805.t1 | AT3G50150 | 25.485 | 361 | 217 | 12 | 4 | 326 | 70 | 416 | 9.09e-24 | 103 |
| MS.gene91805.t1 | AT5G22560 | 28.194 | 227 | 138 | 5 | 27 | 236 | 47 | 265 | 3.29e-22 | 99.4 |
| MS.gene91805.t1 | AT5G22560 | 28.358 | 134 | 94 | 1 | 303 | 434 | 370 | 503 | 8.39e-12 | 67.4 |
| MS.gene91805.t1 | AT3G50170 | 25.000 | 300 | 191 | 7 | 4 | 276 | 93 | 385 | 4.02e-22 | 98.6 |
| MS.gene91805.t1 | AT3G50140 | 25.503 | 298 | 190 | 8 | 5 | 276 | 94 | 385 | 1.00e-21 | 97.1 |
| MS.gene91805.t1 | AT3G50190 | 25.086 | 291 | 168 | 9 | 5 | 276 | 77 | 336 | 1.01e-17 | 84.7 |
| MS.gene91805.t1 | AT3G50190 | 25.685 | 292 | 165 | 10 | 5 | 276 | 77 | 336 | 1.30e-17 | 84.7 |
| MS.gene91805.t1 | AT3G50190 | 25.685 | 292 | 165 | 10 | 5 | 276 | 77 | 336 | 1.30e-17 | 84.7 |
| MS.gene91805.t1 | AT3G02645 | 27.429 | 175 | 108 | 2 | 245 | 418 | 341 | 497 | 3.36e-16 | 81.3 |
| MS.gene91805.t1 | AT3G44700 | 32.258 | 124 | 78 | 5 | 14 | 131 | 34 | 157 | 6.56e-13 | 68.2 |
Find 56 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCAGTTCTACCATAAT+TGG | 0.193723 | 8.3:-81471706 | MS.gene91805:CDS |
| ATAGATATTTCCATTACTTT+TGG | 0.255996 | 8.3:-81472752 | MS.gene91805:CDS |
| ATTGGTTGACATGATACTAT+TGG | 0.305573 | 8.3:-81472616 | MS.gene91805:CDS |
| TTTAACTTTCGTCGCGTTGT+TGG | 0.311790 | 8.3:-81471658 | MS.gene91805:CDS |
| TGATATCTGCGAATTTCTTT+TGG | 0.336636 | 8.3:+81472649 | None:intergenic |
| TAGAACAGCTATCCCAATTA+TGG | 0.339485 | 8.3:+81471693 | None:intergenic |
| AGAAGCAATTGTGCACGAAT+TGG | 0.353119 | 8.3:-81471893 | MS.gene91805:CDS |
| TTGAGTTGGTTTCTTTGTTT+AGG | 0.358010 | 8.3:-81472117 | MS.gene91805:CDS |
| GTCGTGTTATTACCAACTTA+TGG | 0.367785 | 8.3:-81471809 | MS.gene91805:CDS |
| ACAAAGAATGTTTGATGGTA+AGG | 0.389012 | 8.3:-81472230 | MS.gene91805:CDS |
| ACACCTCTACTCATATCTAT+TGG | 0.391628 | 8.3:-81472825 | MS.gene91805:CDS |
| CTGGGATGTTAATTATTTGT+TGG | 0.398663 | 8.3:+81472931 | None:intergenic |
| GAAAGTTTGAGGCAAAGAAA+TGG | 0.405649 | 8.3:-81472332 | MS.gene91805:CDS |
| AAAGTTTGAGGCAAAGAAAT+GGG | 0.406405 | 8.3:-81472331 | MS.gene91805:CDS |
| TTGCAAATGTAAGGCTCATC+AGG | 0.412545 | 8.3:+81471979 | None:intergenic |
| TAGCAACTCTGCGTCTTCTT+CGG | 0.424083 | 8.3:+81471924 | None:intergenic |
| GAAGCAATTGTGCACGAATT+GGG | 0.427029 | 8.3:-81471892 | MS.gene91805:CDS |
| CATTAAGATCTTCCATAAGT+TGG | 0.441137 | 8.3:+81471797 | None:intergenic |
| AGATATCAACAATGAACAAT+TGG | 0.443215 | 8.3:-81472634 | MS.gene91805:CDS |
| GAAACATAATTGCAAATGTA+AGG | 0.443461 | 8.3:+81471970 | None:intergenic |
| TTCACCTTCAAAAGAGTAGC+AGG | 0.450633 | 8.3:+81472861 | None:intergenic |
| CCATAACAACAAAAGACTTA+AGG | 0.457511 | 8.3:-81472793 | MS.gene91805:CDS |
| CATCTTGTTACCCGCATCAC+AGG | 0.462910 | 8.3:-81472368 | MS.gene91805:CDS |
| ACTACAACAGTGAATGGAAA+AGG | 0.467565 | 8.3:-81471771 | MS.gene91805:CDS |
| ATTGGATTCTGTGTTCATCA+TGG | 0.468580 | 8.3:-81472598 | MS.gene91805:CDS |
| TCAGCTTCCGATTTATGTGT+TGG | 0.469424 | 8.3:-81472469 | MS.gene91805:CDS |
| ATGAACACTACAACAGTGAA+TGG | 0.475271 | 8.3:-81471777 | MS.gene91805:CDS |
| CTGAAGATTCCCTGTGATGC+GGG | 0.477114 | 8.3:+81472358 | None:intergenic |
| CAGTGAATGGAAAAGGGCTA+TGG | 0.481943 | 8.3:-81471764 | MS.gene91805:CDS |
| CTCAAACTTTATGTCAAGCA+AGG | 0.488762 | 8.3:+81472152 | None:intergenic |
| GAAGCAGTTCTACCATAATT+GGG | 0.495113 | 8.3:-81471705 | MS.gene91805:CDS |
| GACACTGCTCAAAAGCGATT+AGG | 0.499699 | 8.3:+81472007 | None:intergenic |
| GATACAACATTGAGGCCAAT+GGG | 0.502608 | 8.3:+81472893 | None:intergenic |
| CTACAACAGTGAATGGAAAA+GGG | 0.513538 | 8.3:-81471770 | MS.gene91805:CDS |
| GCAACAAAGTTGAATGAAGC+TGG | 0.514234 | 8.3:-81472204 | MS.gene91805:CDS |
| GGGCTATGGGTACATTAAAG+TGG | 0.515344 | 8.3:-81471750 | MS.gene91805:CDS |
| GCCTCAATGTTGTATCTACA+AGG | 0.517588 | 8.3:-81472886 | MS.gene91805:CDS |
| TAGGTTCCTCAAAACACATT+CGG | 0.523556 | 8.3:+81472026 | None:intergenic |
| GGCTATGGGTACATTAAAGT+GGG | 0.534765 | 8.3:-81471749 | MS.gene91805:CDS |
| CTAGGCGATTCCAAAAGTAA+TGG | 0.536662 | 8.3:+81472742 | None:intergenic |
| TCTGAAGATTCCCTGTGATG+CGG | 0.546993 | 8.3:+81472357 | None:intergenic |
| ATCTTCAGAAAGAAAGTTTG+AGG | 0.554166 | 8.3:-81472343 | MS.gene91805:CDS |
| AGATACAACATTGAGGCCAA+TGG | 0.562113 | 8.3:+81472892 | None:intergenic |
| AGCTGGTATAAGCTTTGAGA+AGG | 0.574187 | 8.3:-81472187 | MS.gene91805:CDS |
| GTTTGCACAGATTGTTAACA+AGG | 0.589492 | 8.3:+81471848 | None:intergenic |
| AGTGAATGGAAAAGGGCTAT+GGG | 0.589763 | 8.3:-81471763 | MS.gene91805:CDS |
| AAAATATAGAGCCTTCCCAT+TGG | 0.601300 | 8.3:-81472908 | MS.gene91805:CDS |
| ATCTTGTTACCCGCATCACA+GGG | 0.604095 | 8.3:-81472367 | MS.gene91805:CDS |
| CAACATTGAGGCCAATGGGA+AGG | 0.610470 | 8.3:+81472897 | None:intergenic |
| CAAGAAGCAATAAATCACGC+TGG | 0.619840 | 8.3:+81472496 | None:intergenic |
| ATGGTAGAACTGCTTCTCCA+AGG | 0.620610 | 8.3:+81471712 | None:intergenic |
| CAAAGAAACCAACTCAACAA+AGG | 0.633809 | 8.3:+81472123 | None:intergenic |
| GGTCCAATAGATATGAGTAG+AGG | 0.668562 | 8.3:+81472822 | None:intergenic |
| GCTTTGAAGCACTTGCAACA+CGG | 0.686234 | 8.3:+81472087 | None:intergenic |
| GCACGAATTGGGAAGCAACG+AGG | 0.701700 | 8.3:-81471881 | MS.gene91805:CDS |
| ACCTTGTAGATACAACATTG+AGG | 0.707204 | 8.3:+81472885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAGAGAAAACAAAAAAT+GGG | - | chr8.3:81472034-81472053 | MS.gene91805:CDS | 20.0% |
| !!! | ACTGATTTTTTAGTTTCATA+GGG | + | chr8.3:81472340-81472359 | None:intergenic | 20.0% |
| !!! | ATAGATATTTCCATTACTTT+TGG | - | chr8.3:81471850-81471869 | MS.gene91805:CDS | 20.0% |
| !!! | TACTGATTTTTTAGTTTCAT+AGG | + | chr8.3:81472341-81472360 | None:intergenic | 20.0% |
| !!! | TTCTAAGAGAAAACAAAAAA+TGG | - | chr8.3:81472033-81472052 | MS.gene91805:CDS | 20.0% |
| ! | AGATATCAACAATGAACAAT+TGG | - | chr8.3:81471968-81471987 | MS.gene91805:CDS | 25.0% |
| ! | GAAACATAATTGCAAATGTA+AGG | + | chr8.3:81472635-81472654 | None:intergenic | 25.0% |
| !! | AGTTTTTCCAACACATAAAT+CGG | + | chr8.3:81472143-81472162 | None:intergenic | 25.0% |
| !! | TTTTCACAAAGAATGTTTGA+TGG | - | chr8.3:81472367-81472386 | MS.gene91805:CDS | 25.0% |
| !!! | TGAAATCACTTTTTTTGTCT+AGG | + | chr8.3:81471881-81471900 | None:intergenic | 25.0% |
| AGAAAAAACCTTTGTTGAGT+TGG | - | chr8.3:81472471-81472490 | MS.gene91805:CDS | 30.0% | |
| ATCTTCAGAAAGAAAGTTTG+AGG | - | chr8.3:81472259-81472278 | MS.gene91805:CDS | 30.0% | |
| ATTGGTTGACATGATACTAT+TGG | - | chr8.3:81471986-81472005 | MS.gene91805:CDS | 30.0% | |
| CATTAAGATCTTCCATAAGT+TGG | + | chr8.3:81472808-81472827 | None:intergenic | 30.0% | |
| CCATAACAACAAAAGACTTA+AGG | - | chr8.3:81471809-81471828 | MS.gene91805:CDS | 30.0% | |
| CTGGGATGTTAATTATTTGT+TGG | + | chr8.3:81471674-81471693 | None:intergenic | 30.0% | |
| ! | AAAGTTTGAGGCAAAGAAAT+GGG | - | chr8.3:81472271-81472290 | MS.gene91805:CDS | 30.0% |
| ! | ACAAAGAATGTTTGATGGTA+AGG | - | chr8.3:81472372-81472391 | MS.gene91805:CDS | 30.0% |
| ! | TATTTTGCTCTTCTTGTTGA+AGG | + | chr8.3:81471920-81471939 | None:intergenic | 30.0% |
| ! | TGATATCTGCGAATTTCTTT+TGG | + | chr8.3:81471956-81471975 | None:intergenic | 30.0% |
| !! | CGAATTTCTTTTGGTAACAT+CGG | + | chr8.3:81471947-81471966 | None:intergenic | 30.0% |
| !! | TTGAGTTGGTTTCTTTGTTT+AGG | - | chr8.3:81472485-81472504 | MS.gene91805:CDS | 30.0% |
| !!! | CCTTAAGTCTTTTGTTGTTA+TGG | + | chr8.3:81471812-81471831 | None:intergenic | 30.0% |
| !!! | TAAGTCTTTTGTTGTTATGG+TGG | + | chr8.3:81471809-81471828 | None:intergenic | 30.0% |
| AAAATATAGAGCCTTCCCAT+TGG | - | chr8.3:81471694-81471713 | MS.gene91805:CDS | 35.0% | |
| ACACCTCTACTCATATCTAT+TGG | - | chr8.3:81471777-81471796 | MS.gene91805:CDS | 35.0% | |
| ACCTTGTAGATACAACATTG+AGG | + | chr8.3:81471720-81471739 | None:intergenic | 35.0% | |
| ACTACAACAGTGAATGGAAA+AGG | - | chr8.3:81472831-81472850 | MS.gene91805:CDS | 35.0% | |
| AGAAGCAGTTCTACCATAAT+TGG | - | chr8.3:81472896-81472915 | MS.gene91805:CDS | 35.0% | |
| ATGAACACTACAACAGTGAA+TGG | - | chr8.3:81472825-81472844 | MS.gene91805:CDS | 35.0% | |
| ATTGGATTCTGTGTTCATCA+TGG | - | chr8.3:81472004-81472023 | MS.gene91805:CDS | 35.0% | |
| CAAAGAAACCAACTCAACAA+AGG | + | chr8.3:81472482-81472501 | None:intergenic | 35.0% | |
| CTACAACAGTGAATGGAAAA+GGG | - | chr8.3:81472832-81472851 | MS.gene91805:CDS | 35.0% | |
| CTCAAACTTTATGTCAAGCA+AGG | + | chr8.3:81472453-81472472 | None:intergenic | 35.0% | |
| GAAGCAGTTCTACCATAATT+GGG | - | chr8.3:81472897-81472916 | MS.gene91805:CDS | 35.0% | |
| GTTTGCACAGATTGTTAACA+AGG | + | chr8.3:81472757-81472776 | None:intergenic | 35.0% | |
| TAGAACAGCTATCCCAATTA+TGG | + | chr8.3:81472912-81472931 | None:intergenic | 35.0% | |
| TAGGTTCCTCAAAACACATT+CGG | + | chr8.3:81472579-81472598 | None:intergenic | 35.0% | |
| ! | GAAAGTTTGAGGCAAAGAAA+TGG | - | chr8.3:81472270-81472289 | MS.gene91805:CDS | 35.0% |
| ! | GCAATGTCAAAAAGCACAAT+TGG | - | chr8.3:81472183-81472202 | MS.gene91805:CDS | 35.0% |
| ! | GTCGTGTTATTACCAACTTA+TGG | - | chr8.3:81472793-81472812 | MS.gene91805:CDS | 35.0% |
| !! | CGTGATCTACTTTTAACTGT+GGG | + | chr8.3:81472553-81472572 | None:intergenic | 35.0% |
| !! | TACTCTTTTGAAGGTGAAAG+AGG | - | chr8.3:81471746-81471765 | MS.gene91805:CDS | 35.0% |
| !! | TTGTGCTTTTTGACATTGCT+TGG | + | chr8.3:81472182-81472201 | None:intergenic | 35.0% |
| !!! | CTTTTGTTGTTATGGTGGAT+AGG | + | chr8.3:81471804-81471823 | None:intergenic | 35.0% |
| AGAAGCAATTGTGCACGAAT+TGG | - | chr8.3:81472709-81472728 | MS.gene91805:CDS | 40.0% | |
| AGATACAACATTGAGGCCAA+TGG | + | chr8.3:81471713-81471732 | None:intergenic | 40.0% | |
| AGTGAATGGAAAAGGGCTAT+GGG | - | chr8.3:81472839-81472858 | MS.gene91805:CDS | 40.0% | |
| CAAGAAGCAATAAATCACGC+TGG | + | chr8.3:81472109-81472128 | None:intergenic | 40.0% | |
| CTAGGCGATTCCAAAAGTAA+TGG | + | chr8.3:81471863-81471882 | None:intergenic | 40.0% | |
| GAAGCAATTGTGCACGAATT+GGG | - | chr8.3:81472710-81472729 | MS.gene91805:CDS | 40.0% | |
| GATACAACATTGAGGCCAAT+GGG | + | chr8.3:81471712-81471731 | None:intergenic | 40.0% | |
| GCAACAAAGTTGAATGAAGC+TGG | - | chr8.3:81472398-81472417 | MS.gene91805:CDS | 40.0% | |
| GCCTCAATGTTGTATCTACA+AGG | - | chr8.3:81471716-81471735 | MS.gene91805:CDS | 40.0% | |
| GGCTATGGGTACATTAAAGT+GGG | - | chr8.3:81472853-81472872 | MS.gene91805:CDS | 40.0% | |
| GGTCCAATAGATATGAGTAG+AGG | + | chr8.3:81471783-81471802 | None:intergenic | 40.0% | |
| TCAGCTTCCGATTTATGTGT+TGG | - | chr8.3:81472133-81472152 | MS.gene91805:CDS | 40.0% | |
| TTCACCTTCAAAAGAGTAGC+AGG | + | chr8.3:81471744-81471763 | None:intergenic | 40.0% | |
| TTGCAAATGTAAGGCTCATC+AGG | + | chr8.3:81472626-81472645 | None:intergenic | 40.0% | |
| ! | GGGAAGGCTCTATATTTTCT+GGG | + | chr8.3:81471692-81471711 | None:intergenic | 40.0% |
| ! | TGGGAAGGCTCTATATTTTC+TGG | + | chr8.3:81471693-81471712 | None:intergenic | 40.0% |
| ! | TTTAACTTTCGTCGCGTTGT+TGG | - | chr8.3:81472944-81472963 | MS.gene91805:CDS | 40.0% |
| !! | AGCTGGTATAAGCTTTGAGA+AGG | - | chr8.3:81472415-81472434 | MS.gene91805:CDS | 40.0% |
| !! | GCGTGATCTACTTTTAACTG+TGG | + | chr8.3:81472554-81472573 | None:intergenic | 40.0% |
| !! | GGGTTTATTTTCGTGATCCT+TGG | - | chr8.3:81472873-81472892 | MS.gene91805:CDS | 40.0% |
| !! | TCTTTTGAAGGTGAAAGAGG+AGG | - | chr8.3:81471749-81471768 | MS.gene91805:CDS | 40.0% |
| ATCTTGTTACCCGCATCACA+GGG | - | chr8.3:81472235-81472254 | MS.gene91805:CDS | 45.0% | |
| ATGGTAGAACTGCTTCTCCA+AGG | + | chr8.3:81472893-81472912 | None:intergenic | 45.0% | |
| CAGTGAATGGAAAAGGGCTA+TGG | - | chr8.3:81472838-81472857 | MS.gene91805:CDS | 45.0% | |
| GACACTGCTCAAAAGCGATT+AGG | + | chr8.3:81472598-81472617 | None:intergenic | 45.0% | |
| GGGCTATGGGTACATTAAAG+TGG | - | chr8.3:81472852-81472871 | MS.gene91805:CDS | 45.0% | |
| TAGCAACTCTGCGTCTTCTT+CGG | + | chr8.3:81472681-81472700 | None:intergenic | 45.0% | |
| TCTGAAGATTCCCTGTGATG+CGG | + | chr8.3:81472248-81472267 | None:intergenic | 45.0% | |
| ! | GGTTCCTGCTACTCTTTTGA+AGG | - | chr8.3:81471737-81471756 | MS.gene91805:CDS | 45.0% |
| !! | GCTTTGAAGCACTTGCAACA+CGG | + | chr8.3:81472518-81472537 | None:intergenic | 45.0% |
| CAACATTGAGGCCAATGGGA+AGG | + | chr8.3:81471708-81471727 | None:intergenic | 50.0% | |
| CATCTTGTTACCCGCATCAC+AGG | - | chr8.3:81472234-81472253 | MS.gene91805:CDS | 50.0% | |
| CTGAAGATTCCCTGTGATGC+GGG | + | chr8.3:81472247-81472266 | None:intergenic | 50.0% | |
| ! | ACGCGACCGAATGTGTTTTG+AGG | - | chr8.3:81472570-81472589 | MS.gene91805:CDS | 50.0% |
| GCACGAATTGGGAAGCAACG+AGG | - | chr8.3:81472721-81472740 | MS.gene91805:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 81471645 | 81472979 | 81471645 | ID=MS.gene91805 |
| chr8.3 | mRNA | 81471645 | 81472979 | 81471645 | ID=MS.gene91805.t1;Parent=MS.gene91805 |
| chr8.3 | exon | 81471645 | 81472979 | 81471645 | ID=MS.gene91805.t1.exon1;Parent=MS.gene91805.t1 |
| chr8.3 | CDS | 81471645 | 81472979 | 81471645 | ID=cds.MS.gene91805.t1;Parent=MS.gene91805.t1 |
| Gene Sequence |
| Protein sequence |
