Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42091.t1 | XP_012569043.1 | 84 | 194 | 24 | 2 | 1 | 187 | 16 | 209 | 1.30E-85 | 325.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42091.t1 | Q9LZX1 | 56.0 | 191 | 77 | 2 | 2 | 185 | 21 | 211 | 2.5e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42091.t1 | A0A1S3E0S2 | 84.0 | 194 | 24 | 2 | 1 | 187 | 16 | 209 | 9.3e-86 | 325.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene42091 | 0.85085 | 1.30E-60 | -1.69E-46 |
| MS.gene050416 | MS.gene42091 | 0.821745 | 3.43E-53 | -1.69E-46 |
| MS.gene051564 | MS.gene42091 | -0.817809 | 2.72E-52 | -1.69E-46 |
| MS.gene051566 | MS.gene42091 | -0.801517 | 8.68E-49 | -1.69E-46 |
| MS.gene054601 | MS.gene42091 | 0.806578 | 7.69E-50 | -1.69E-46 |
| MS.gene056311 | MS.gene42091 | 0.807735 | 4.37E-50 | -1.69E-46 |
| MS.gene056408 | MS.gene42091 | 0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene057014 | MS.gene42091 | 0.824918 | 6.22E-54 | -1.69E-46 |
| MS.gene060237 | MS.gene42091 | 0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene42091 | -0.805303 | 1.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99705 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene99704 | PPI |
| MS.gene009719 | MS.gene42091 | PPI |
| MS.gene87769 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene42099 | PPI |
| MS.gene42091 | MS.gene91238 | PPI |
| MS.gene99704 | MS.gene42091 | PPI |
| MS.gene26305 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene87040 | PPI |
| MS.gene42091 | MS.gene25045 | PPI |
| MS.gene87039 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene87046 | PPI |
| MS.gene42848 | MS.gene42091 | PPI |
| MS.gene42103 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene87768 | PPI |
| MS.gene42091 | MS.gene81036 | PPI |
| MS.gene42098 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene009718 | PPI |
| MS.gene87043 | MS.gene42091 | PPI |
| MS.gene87765 | MS.gene42091 | PPI |
| MS.gene051028 | MS.gene42091 | PPI |
| MS.gene87767 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene42100 | PPI |
| MS.gene42091 | MS.gene42097 | PPI |
| MS.gene42091 | MS.gene87762 | PPI |
| MS.gene42091 | MS.gene42096 | PPI |
| MS.gene91237 | MS.gene42091 | PPI |
| MS.gene42091 | MS.gene87038 | PPI |
| MS.gene87041 | MS.gene42091 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42091.t1 | MTR_7g072270 | 95.455 | 198 | 3 | 1 | 1 | 192 | 15 | 212 | 7.10e-140 | 389 |
| MS.gene42091.t1 | MTR_7g072120 | 81.313 | 198 | 29 | 3 | 1 | 190 | 15 | 212 | 6.96e-116 | 328 |
| MS.gene42091.t1 | MTR_7g072170 | 79.397 | 199 | 34 | 2 | 1 | 192 | 16 | 214 | 2.69e-114 | 324 |
| MS.gene42091.t1 | MTR_7g072140 | 79.188 | 197 | 34 | 2 | 1 | 190 | 16 | 212 | 1.89e-112 | 319 |
| MS.gene42091.t1 | MTR_7g072250 | 75.481 | 208 | 31 | 3 | 1 | 192 | 40 | 243 | 2.58e-106 | 305 |
| MS.gene42091.t1 | MTR_7g072270 | 93.377 | 151 | 4 | 1 | 1 | 145 | 15 | 165 | 1.67e-102 | 292 |
| MS.gene42091.t1 | MTR_4g029430 | 56.842 | 190 | 71 | 2 | 5 | 187 | 12 | 197 | 4.52e-77 | 229 |
| MS.gene42091.t1 | MTR_7g071710 | 81.897 | 116 | 21 | 0 | 72 | 187 | 1 | 116 | 5.02e-71 | 211 |
| MS.gene42091.t1 | MTR_1g014180 | 53.439 | 189 | 72 | 6 | 4 | 181 | 1 | 184 | 5.42e-59 | 183 |
| MS.gene42091.t1 | MTR_1g014150 | 45.745 | 188 | 91 | 5 | 1 | 181 | 5 | 188 | 5.55e-47 | 152 |
| MS.gene42091.t1 | MTR_1g014160 | 41.237 | 194 | 86 | 7 | 10 | 181 | 52 | 239 | 1.31e-30 | 112 |
| MS.gene42091.t1 | MTR_5g074550 | 34.270 | 178 | 100 | 7 | 18 | 181 | 17 | 191 | 1.08e-23 | 93.2 |
| MS.gene42091.t1 | MTR_2g103840 | 30.357 | 168 | 103 | 6 | 31 | 188 | 42 | 205 | 6.77e-21 | 86.7 |
| MS.gene42091.t1 | MTR_5g074560 | 32.164 | 171 | 103 | 7 | 18 | 181 | 20 | 184 | 2.71e-19 | 81.6 |
| MS.gene42091.t1 | MTR_4g010180 | 25.263 | 190 | 129 | 7 | 8 | 187 | 7 | 193 | 7.26e-18 | 78.2 |
| MS.gene42091.t1 | MTR_2g103850 | 26.702 | 191 | 125 | 7 | 8 | 187 | 19 | 205 | 2.09e-16 | 74.7 |
| MS.gene42091.t1 | MTR_0650s0010 | 25.654 | 191 | 124 | 6 | 8 | 181 | 7 | 196 | 1.89e-12 | 63.5 |
| MS.gene42091.t1 | MTR_8g099000 | 26.699 | 206 | 120 | 10 | 5 | 184 | 31 | 231 | 2.22e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42091.t1 | AT5G01750 | 54.872 | 195 | 81 | 2 | 2 | 189 | 21 | 215 | 3.73e-84 | 248 |
| MS.gene42091.t1 | AT3G11740 | 59.358 | 187 | 68 | 3 | 7 | 185 | 2 | 188 | 2.97e-80 | 237 |
| MS.gene42091.t1 | AT2G14560 | 49.468 | 188 | 88 | 2 | 5 | 185 | 4 | 191 | 2.01e-66 | 202 |
| MS.gene42091.t1 | AT2G14560 | 49.468 | 188 | 88 | 2 | 5 | 185 | 64 | 251 | 2.72e-65 | 202 |
| MS.gene42091.t1 | AT1G33840 | 50.270 | 185 | 85 | 2 | 8 | 185 | 27 | 211 | 3.63e-65 | 200 |
| MS.gene42091.t1 | AT5G01750 | 52.632 | 152 | 65 | 2 | 2 | 146 | 21 | 172 | 1.44e-60 | 186 |
| MS.gene42091.t1 | AT2G14560 | 46.667 | 150 | 73 | 2 | 5 | 147 | 4 | 153 | 2.01e-50 | 161 |
| MS.gene42091.t1 | AT2G14560 | 46.667 | 150 | 73 | 2 | 5 | 147 | 64 | 213 | 2.99e-49 | 160 |
| MS.gene42091.t1 | AT1G33840 | 46.939 | 147 | 71 | 2 | 8 | 147 | 27 | 173 | 6.27e-47 | 152 |
| MS.gene42091.t1 | AT3G16900 | 39.459 | 185 | 86 | 5 | 8 | 185 | 15 | 180 | 5.02e-43 | 142 |
| MS.gene42091.t1 | AT3G56180 | 34.021 | 194 | 112 | 5 | 7 | 190 | 17 | 204 | 8.88e-33 | 117 |
| MS.gene42091.t1 | AT3G56180 | 33.505 | 194 | 111 | 6 | 7 | 190 | 17 | 202 | 1.67e-30 | 111 |
| MS.gene42091.t1 | AT3G10986 | 32.487 | 197 | 116 | 5 | 7 | 190 | 3 | 195 | 5.39e-30 | 109 |
| MS.gene42091.t1 | AT3G15810 | 28.485 | 165 | 106 | 4 | 31 | 187 | 44 | 204 | 1.04e-20 | 85.9 |
| MS.gene42091.t1 | AT1G80120 | 30.357 | 168 | 102 | 5 | 31 | 187 | 30 | 193 | 9.68e-17 | 75.1 |
| MS.gene42091.t1 | AT2G30270 | 30.114 | 176 | 110 | 7 | 11 | 181 | 12 | 179 | 1.04e-15 | 72.0 |
| MS.gene42091.t1 | AT2G38640 | 28.497 | 193 | 122 | 7 | 2 | 184 | 6 | 192 | 6.93e-14 | 67.4 |
Find 46 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGTCTTAAATTGCATT+AGG | 0.261327 | 7.3:+32429738 | None:intergenic |
| GGAACTCGCGGTGGTGAAAA+AGG | 0.328185 | 7.3:-32431624 | MS.gene42091:CDS |
| CCACTCCCCACCACCATAAT+AGG | 0.328414 | 7.3:-32431674 | MS.gene42091:CDS |
| ACAATATTGAGGACCTATTA+TGG | 0.329253 | 7.3:+32431661 | None:intergenic |
| TTTGGTCTTAAATTGCATTA+GGG | 0.330409 | 7.3:+32429739 | None:intergenic |
| AAACATCGTCTTCAAAGTTA+AGG | 0.341780 | 7.3:-32431558 | MS.gene42091:CDS |
| AGCAAGAAACACATCTAATT+TGG | 0.342809 | 7.3:+32429721 | None:intergenic |
| GTGGCATTAATCGTGATTCT+TGG | 0.373611 | 7.3:-32429385 | MS.gene42091:CDS |
| CCTATTATGGTGGTGGGGAG+TGG | 0.386608 | 7.3:+32431674 | None:intergenic |
| GATAAACTGTGACCATAAAA+TGG | 0.388429 | 7.3:+32429431 | None:intergenic |
| TAGGGTGACGATGGGGTTAC+CGG | 0.394628 | 7.3:+32431490 | None:intergenic |
| AACATCGTCTTCAAAGTTAA+GGG | 0.424422 | 7.3:-32431557 | MS.gene42091:CDS |
| TCAATATTGTACTCCGTATC+CGG | 0.435276 | 7.3:-32431648 | MS.gene42091:CDS |
| TATAAAAGCGTAATCAATGT+TGG | 0.462661 | 7.3:+32429408 | None:intergenic |
| TTCACCACCGCGAGTTCCAC+CGG | 0.471983 | 7.3:+32431629 | None:intergenic |
| ATTATGGTGGTGGGGAGTGG+TGG | 0.478500 | 7.3:+32431677 | None:intergenic |
| ATAAAAGCGTAATCAATGTT+GGG | 0.479628 | 7.3:+32429409 | None:intergenic |
| GTGGTGGGGAGTGGTGGCAT+CGG | 0.489299 | 7.3:+32431683 | None:intergenic |
| ATCTAATAACATTGTTGCAC+AGG | 0.491705 | 7.3:-32429618 | MS.gene42091:intron |
| ACCGCGAGTTCCACCGGATA+CGG | 0.506167 | 7.3:+32431635 | None:intergenic |
| CATACGTGACCACCGTGTCT+TGG | 0.511624 | 7.3:-32431522 | MS.gene42091:CDS |
| TTGAGGACCTATTATGGTGG+TGG | 0.512301 | 7.3:+32431667 | None:intergenic |
| CGATCTTGCACTGTTTATGC+TGG | 0.521359 | 7.3:-32429644 | MS.gene42091:CDS |
| ACTTTAAAGTCAGAGGCAGT+TGG | 0.523990 | 7.3:-32429673 | MS.gene42091:CDS |
| CGTGTCTTGGTTGATGCCGC+CGG | 0.540357 | 7.3:-32431509 | MS.gene42091:CDS |
| CAAGACACGGTGGTCACGTA+TGG | 0.560214 | 7.3:+32431523 | None:intergenic |
| TGAGGACCTATTATGGTGGT+GGG | 0.561040 | 7.3:+32431668 | None:intergenic |
| ATTGACTATGCATGATCGGT+GGG | 0.561743 | 7.3:-32429822 | MS.gene42091:CDS |
| GATCGGTGGGAAGCGTATAG+AGG | 0.562084 | 7.3:-32429809 | MS.gene42091:CDS |
| AGGTCAAAGCACAAATGCTA+AGG | 0.563005 | 7.3:-32429789 | MS.gene42091:CDS |
| AACGGTTAAGTTGTCTGCAA+TGG | 0.565832 | 7.3:+32431595 | None:intergenic |
| TCCGTATCCGGTGGAACTCG+CGG | 0.569419 | 7.3:-32431636 | MS.gene42091:CDS |
| GTTTGTGACTTTAAAGTCAG+AGG | 0.577508 | 7.3:-32429680 | MS.gene42091:CDS |
| AGATATTGACTATGCATGAT+CGG | 0.578461 | 7.3:-32429826 | MS.gene42091:CDS |
| TATTGACTATGCATGATCGG+TGG | 0.603063 | 7.3:-32429823 | MS.gene42091:CDS |
| GTTTCCGTTGACATCAGTAA+CGG | 0.626878 | 7.3:+32431577 | None:intergenic |
| TTAACCGTTACTGATGTCAA+CGG | 0.627879 | 7.3:-32431581 | MS.gene42091:CDS |
| GGATACGGAGTACAATATTG+AGG | 0.634570 | 7.3:+32431650 | None:intergenic |
| ATGCAAAGAATAGTAACTAG+AGG | 0.634925 | 7.3:-32429348 | None:intergenic |
| ATATTGTACTCCGTATCCGG+TGG | 0.669257 | 7.3:-32431645 | MS.gene42091:CDS |
| GGTGACGATGGGGTTACCGG+CGG | 0.670759 | 7.3:+32431493 | None:intergenic |
| CGGCGGCATCAACCAAGACA+CGG | 0.676606 | 7.3:+32431510 | None:intergenic |
| GAGGACCTATTATGGTGGTG+GGG | 0.685164 | 7.3:+32431669 | None:intergenic |
| GTATCCGGTGGAACTCGCGG+TGG | 0.710572 | 7.3:-32431633 | MS.gene42091:CDS |
| ATATTGAGGACCTATTATGG+TGG | 0.714411 | 7.3:+32431664 | None:intergenic |
| CGGCATCAACCAAGACACGG+TGG | 0.767771 | 7.3:+32431513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAATAGAAATGAAA+CGG | - | chr7.3:32430369-32430388 | MS.gene42091:intron | 10.0% |
| !! | TACAAGAAATAAATAAAATT+GGG | + | chr7.3:32430853-32430872 | None:intergenic | 10.0% |
| !!! | TTAAACTACATTATTTTTAT+AGG | + | chr7.3:32431152-32431171 | None:intergenic | 10.0% |
| !! | AACTATTAATTTAACTCAAT+TGG | - | chr7.3:32430196-32430215 | MS.gene42091:intron | 15.0% |
| !! | ATTAAAAATAGAAATGAAAC+GGG | - | chr7.3:32430370-32430389 | MS.gene42091:intron | 15.0% |
| !! | ATTTAGTTACAGATAAAAAA+AGG | - | chr7.3:32429616-32429635 | MS.gene42091:intron | 15.0% |
| !! | CTACAAGAAATAAATAAAAT+TGG | + | chr7.3:32430854-32430873 | None:intergenic | 15.0% |
| !!! | AAATTATGGACTAATTATAA+TGG | + | chr7.3:32429882-32429901 | None:intergenic | 15.0% |
| !!! | AATCACAAATTAATTTTTTG+TGG | - | chr7.3:32431512-32431531 | MS.gene42091:CDS | 15.0% |
| !!! | ATTTTATTTATTTCTTGTAG+TGG | - | chr7.3:32430854-32430873 | MS.gene42091:intron | 15.0% |
| !!! | TTTTAATTAAGTACTTTGAT+TGG | - | chr7.3:32431466-32431485 | MS.gene42091:intron | 15.0% |
| !! | ACTCATTACATACAAAATTA+TGG | + | chr7.3:32429896-32429915 | None:intergenic | 20.0% |
| !! | TCTAATTGATAAGATAAGAT+CGG | + | chr7.3:32430289-32430308 | None:intergenic | 20.0% |
| !! | TCTTAAGATATAAGATTCAA+TGG | - | chr7.3:32429689-32429708 | MS.gene42091:CDS | 20.0% |
| !! | TTAAGACATTTAATCTAAAC+CGG | + | chr7.3:32430636-32430655 | None:intergenic | 20.0% |
| !! | TTGACATATCTTATTCATAT+TGG | + | chr7.3:32429834-32429853 | None:intergenic | 20.0% |
| !! | TTGTGATTAGTATATATAGT+CGG | + | chr7.3:32431500-32431519 | None:intergenic | 20.0% |
| !!! | GAGAAGATTTTTTTTAATCT+CGG | + | chr7.3:32431056-32431075 | None:intergenic | 20.0% |
| ! | ATCTTATCAATTAGATGTTG+TGG | - | chr7.3:32430294-32430313 | MS.gene42091:intron | 25.0% |
| ! | TAGCTCATATAAAAAGTTAG+TGG | - | chr7.3:32429968-32429987 | MS.gene42091:intron | 25.0% |
| ! | TGTGATTAGTATATATAGTC+GGG | + | chr7.3:32431499-32431518 | None:intergenic | 25.0% |
| ! | TTAAATAAGTTAGCCCATAT+TGG | + | chr7.3:32430613-32430632 | None:intergenic | 25.0% |
| !! | AATTGGTAAAGACCATTTTA+TGG | - | chr7.3:32431588-32431607 | MS.gene42091:CDS | 25.0% |
| !! | AGTATATACAAGCTTTTACT+TGG | - | chr7.3:32429644-32429663 | MS.gene42091:CDS | 25.0% |
| !! | ATAAAAGCGTAATCAATGTT+GGG | + | chr7.3:32431625-32431644 | None:intergenic | 25.0% |
| !! | TATAAAAGCGTAATCAATGT+TGG | + | chr7.3:32431626-32431645 | None:intergenic | 25.0% |
| !! | TTATTTATTTCTTGTAGTGG+TGG | - | chr7.3:32430857-32430876 | MS.gene42091:intron | 25.0% |
| !!! | ATTTGGTCTTAAATTGCATT+AGG | + | chr7.3:32431296-32431315 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAATTGCATTA+GGG | + | chr7.3:32431295-32431314 | None:intergenic | 25.0% |
| AAAAAGACCCGTTTGTAATT+TGG | + | chr7.3:32429935-32429954 | None:intergenic | 30.0% | |
| AAAATAGAAATGAAACGGGT+TGG | - | chr7.3:32430374-32430393 | MS.gene42091:intron | 30.0% | |
| AAACATCGTCTTCAAAGTTA+AGG | - | chr7.3:32429473-32429492 | MS.gene42091:CDS | 30.0% | |
| AAAGCAAGCCAAATTACAAA+CGG | - | chr7.3:32429924-32429943 | MS.gene42091:intron | 30.0% | |
| AACATCGTCTTCAAAGTTAA+GGG | - | chr7.3:32429474-32429493 | MS.gene42091:CDS | 30.0% | |
| ACAATATTGAGGACCTATTA+TGG | + | chr7.3:32429373-32429392 | None:intergenic | 30.0% | |
| ACACATAGCGTAAAAAAGTA+AGG | - | chr7.3:32430725-32430744 | MS.gene42091:intron | 30.0% | |
| AGCAAGAAACACATCTAATT+TGG | + | chr7.3:32431313-32431332 | None:intergenic | 30.0% | |
| AGGATTAAACGACACTTTAT+TGG | + | chr7.3:32431132-32431151 | None:intergenic | 30.0% | |
| ATCTAATAACATTGTTGCAC+AGG | - | chr7.3:32431413-32431432 | MS.gene42091:intron | 30.0% | |
| CAACTTATTGATGTGATTTC+TGG | - | chr7.3:32430001-32430020 | MS.gene42091:intron | 30.0% | |
| GATAAACTGTGACCATAAAA+TGG | + | chr7.3:32431603-32431622 | None:intergenic | 30.0% | |
| GGATTAAACGACACTTTATT+GGG | + | chr7.3:32431131-32431150 | None:intergenic | 30.0% | |
| GTCTCAGATTTAAATACTTC+TGG | - | chr7.3:32430915-32430934 | MS.gene42091:intron | 30.0% | |
| TATCTCATTGATGCGTTTAA+AGG | + | chr7.3:32430764-32430783 | None:intergenic | 30.0% | |
| TGAATAAATAGATGCCAATG+TGG | + | chr7.3:32431081-32431100 | None:intergenic | 30.0% | |
| ! | AAATTACAAACGGGTCTTTT+TGG | - | chr7.3:32429934-32429953 | MS.gene42091:intron | 30.0% |
| ! | AGATATTGACTATGCATGAT+CGG | - | chr7.3:32431205-32431224 | MS.gene42091:intron | 30.0% |
| ! | GGTGCTAACAATTTTTATGT+TGG | - | chr7.3:32430936-32430955 | MS.gene42091:intron | 30.0% |
| ! | TATGGGCTAACTTATTTAAC+CGG | - | chr7.3:32430614-32430633 | MS.gene42091:intron | 30.0% |
| ! | TTTTACTCCTCTAGTATTTG+TGG | - | chr7.3:32430435-32430454 | MS.gene42091:intron | 30.0% |
| !! | CATTGATTACGCTTTTATAG+TGG | - | chr7.3:32431627-32431646 | MS.gene42091:CDS | 30.0% |
| !! | TCACATCAATAAGTTGATAG+TGG | + | chr7.3:32429997-32430016 | None:intergenic | 30.0% |
| AAAAATCTTCTCGTCCACAT+TGG | - | chr7.3:32431064-32431083 | MS.gene42091:intron | 35.0% | |
| AACTCAATTACAATCAGGTC+GGG | - | chr7.3:32430569-32430588 | MS.gene42091:intron | 35.0% | |
| AAGCAAGCCAAATTACAAAC+GGG | - | chr7.3:32429925-32429944 | MS.gene42091:intron | 35.0% | |
| ACTATGAGCTTGTGATCTAA+TGG | + | chr7.3:32430406-32430425 | None:intergenic | 35.0% | |
| ATATTGAGGACCTATTATGG+TGG | + | chr7.3:32429370-32429389 | None:intergenic | 35.0% | |
| CAAAATAGATCGAGCCTAAT+AGG | - | chr7.3:32429851-32429870 | MS.gene42091:intron | 35.0% | |
| CAACTCAATTACAATCAGGT+CGG | - | chr7.3:32430568-32430587 | MS.gene42091:intron | 35.0% | |
| CACATCTATGATCAAGAAGT+TGG | - | chr7.3:32429734-32429753 | MS.gene42091:CDS | 35.0% | |
| GATACAACGAACGACTAATT+TGG | + | chr7.3:32431028-32431047 | None:intergenic | 35.0% | |
| TCAATATTGTACTCCGTATC+CGG | - | chr7.3:32429383-32429402 | MS.gene42091:CDS | 35.0% | |
| TGATACACCACAAATACTAG+AGG | + | chr7.3:32430445-32430464 | None:intergenic | 35.0% | |
| TGTGCAACTCAATTACAATC+AGG | - | chr7.3:32430564-32430583 | MS.gene42091:intron | 35.0% | |
| TTAACCGTTACTGATGTCAA+CGG | - | chr7.3:32429450-32429469 | MS.gene42091:CDS | 35.0% | |
| TTAGATCACAAGCTCATAGT+AGG | - | chr7.3:32430406-32430425 | MS.gene42091:intron | 35.0% | |
| ! | ATGCGTTTAAAGGCTGATTT+GGG | + | chr7.3:32430754-32430773 | None:intergenic | 35.0% |
| !! | ACGGTTACGAGCATTTTAAT+TGG | - | chr7.3:32431571-32431590 | MS.gene42091:CDS | 35.0% |
| !! | CTTTAGAGTGTGTTCTCTTT+AGG | - | chr7.3:32430893-32430912 | MS.gene42091:intron | 35.0% |
| !! | GTTTGTGACTTTAAAGTCAG+AGG | - | chr7.3:32431351-32431370 | MS.gene42091:intron | 35.0% |
| !! | TTATAATGGACCGACCTATT+AGG | + | chr7.3:32429868-32429887 | None:intergenic | 35.0% |
| ACGACACTTTATTGGGTCAT+TGG | + | chr7.3:32431124-32431143 | None:intergenic | 40.0% | |
| AGGTCAAAGCACAAATGCTA+AGG | - | chr7.3:32431242-32431261 | MS.gene42091:intron | 40.0% | |
| ATAGATCGAGCCTAATAGGT+CGG | - | chr7.3:32429855-32429874 | MS.gene42091:intron | 40.0% | |
| ATTGACTATGCATGATCGGT+GGG | - | chr7.3:32431209-32431228 | MS.gene42091:intron | 40.0% | |
| CGACACTTTATTGGGTCATT+GGG | + | chr7.3:32431123-32431142 | None:intergenic | 40.0% | |
| GACACTTTATTGGGTCATTG+GGG | + | chr7.3:32431122-32431141 | None:intergenic | 40.0% | |
| GATGCGTTTAAAGGCTGATT+TGG | + | chr7.3:32430755-32430774 | None:intergenic | 40.0% | |
| GGATACGGAGTACAATATTG+AGG | + | chr7.3:32429384-32429403 | None:intergenic | 40.0% | |
| GTGGCATTAATCGTGATTCT+TGG | - | chr7.3:32431646-32431665 | MS.gene42091:CDS | 40.0% | |
| GTTTCCGTTGACATCAGTAA+CGG | + | chr7.3:32429457-32429476 | None:intergenic | 40.0% | |
| TGAACATACCTTACGACGTA+GGG | + | chr7.3:32429562-32429581 | None:intergenic | 40.0% | |
| TTCCACCTTCAATTAGCAGA+TGG | + | chr7.3:32430998-32431017 | None:intergenic | 40.0% | |
| TTGAACATACCTTACGACGT+AGG | + | chr7.3:32429563-32429582 | None:intergenic | 40.0% | |
| TTGAGCCATCTGCTAATTGA+AGG | - | chr7.3:32430990-32431009 | MS.gene42091:intron | 40.0% | |
| ! | AACGGTTAAGTTGTCTGCAA+TGG | + | chr7.3:32429439-32429458 | None:intergenic | 40.0% |
| ! | ATTTCTTGTAGTGGTGGTGT+AGG | - | chr7.3:32430863-32430882 | MS.gene42091:intron | 40.0% |
| ! | TATTGACTATGCATGATCGG+TGG | - | chr7.3:32431208-32431227 | MS.gene42091:intron | 40.0% |
| !! | ACTTTAAAGTCAGAGGCAGT+TGG | - | chr7.3:32431358-32431377 | MS.gene42091:intron | 40.0% |
| !! | TGCGTTTAAAGGCTGATTTG+GGG | + | chr7.3:32430753-32430772 | None:intergenic | 40.0% |
| AGCCATCTGCTAATTGAAGG+TGG | - | chr7.3:32430993-32431012 | MS.gene42091:intron | 45.0% | |
| ATATTGTACTCCGTATCCGG+TGG | - | chr7.3:32429386-32429405 | MS.gene42091:CDS | 45.0% | |
| CGATCTTGCACTGTTTATGC+TGG | - | chr7.3:32431387-32431406 | MS.gene42091:intron | 45.0% | |
| GGTGTATCAGTCTCAAACTC+AGG | - | chr7.3:32430456-32430475 | MS.gene42091:intron | 45.0% | |
| GTCTCAAACTCAGGTCATCA+AGG | - | chr7.3:32430465-32430484 | MS.gene42091:intron | 45.0% | |
| TGAGGACCTATTATGGTGGT+GGG | + | chr7.3:32429366-32429385 | None:intergenic | 45.0% | |
| TTGAGGACCTATTATGGTGG+TGG | + | chr7.3:32429367-32429386 | None:intergenic | 45.0% | |
| ! | AGTTAGCCCATATTGGCCTA+CGG | + | chr7.3:32430606-32430625 | None:intergenic | 45.0% |
| ! | CAATCAGGTCGGGTTGTAAT+CGG | - | chr7.3:32430579-32430598 | MS.gene42091:intron | 45.0% |
| ! | GCAGATGCACAAAAAGCACA+CGG | - | chr7.3:32431552-32431571 | MS.gene42091:CDS | 45.0% |
| !! | AGAAATGAAACGGGTTGGAC+TGG | - | chr7.3:32430379-32430398 | MS.gene42091:intron | 45.0% |
| !!! | ATTTCTATTTTTAATTTATT+TGG | + | chr7.3:32430365-32430384 | None:intergenic | 5.0% |
| GCCAATCTATGGGGACATGT+GGG | + | chr7.3:32430808-32430827 | None:intergenic | 50.0% | |
| GTCGCGTCATGCCAATCTAT+GGG | + | chr7.3:32430818-32430837 | None:intergenic | 50.0% | |
| TCGCGTCATGCCAATCTATG+GGG | + | chr7.3:32430817-32430836 | None:intergenic | 50.0% | |
| TGCCAATCTATGGGGACATG+TGG | + | chr7.3:32430809-32430828 | None:intergenic | 50.0% | |
| TTACGACGTAGGGTGACGAT+GGG | + | chr7.3:32429552-32429571 | None:intergenic | 50.0% | |
| ! | GAGGACCTATTATGGTGGTG+GGG | + | chr7.3:32429365-32429384 | None:intergenic | 50.0% |
| ! | GTTAGCCCATATTGGCCTAC+GGG | + | chr7.3:32430605-32430624 | None:intergenic | 50.0% |
| AATCGGCCCGTAGGCCAATA+TGG | - | chr7.3:32430596-32430615 | MS.gene42091:intron | 55.0% | |
| ATCGGCCCGTAGGCCAATAT+GGG | - | chr7.3:32430597-32430616 | MS.gene42091:intron | 55.0% | |
| CAAGACACGGTGGTCACGTA+TGG | + | chr7.3:32429511-32429530 | None:intergenic | 55.0% | |
| CATACGTGACCACCGTGTCT+TGG | - | chr7.3:32429509-32429528 | MS.gene42091:intron | 55.0% | |
| CATCGTCACCCTACGTCGTA+AGG | - | chr7.3:32429551-32429570 | MS.gene42091:intron | 55.0% | |
| CCACTCCCCACCACCATAAT+AGG | - | chr7.3:32429357-32429376 | MS.gene42091:CDS | 55.0% | |
| CGTCGCGTCATGCCAATCTA+TGG | + | chr7.3:32430819-32430838 | None:intergenic | 55.0% | |
| CTTACGACGTAGGGTGACGA+TGG | + | chr7.3:32429553-32429572 | None:intergenic | 55.0% | |
| GCCCACATGTCCCCATAGAT+TGG | - | chr7.3:32430804-32430823 | MS.gene42091:intron | 55.0% | |
| GGAACTCGCGGTGGTGAAAA+AGG | - | chr7.3:32429407-32429426 | MS.gene42091:CDS | 55.0% | |
| TACGACGTAGGGTGACGATG+GGG | + | chr7.3:32429551-32429570 | None:intergenic | 55.0% | |
| TAGGGTGACGATGGGGTTAC+CGG | + | chr7.3:32429544-32429563 | None:intergenic | 55.0% | |
| ! | GATCGGTGGGAAGCGTATAG+AGG | - | chr7.3:32431222-32431241 | MS.gene42091:intron | 55.0% |
| !! | ATTATGGTGGTGGGGAGTGG+TGG | + | chr7.3:32429357-32429376 | None:intergenic | 55.0% |
| !! | CCTATTATGGTGGTGGGGAG+TGG | + | chr7.3:32429360-32429379 | None:intergenic | 55.0% |
| ACCGCGAGTTCCACCGGATA+CGG | + | chr7.3:32429399-32429418 | None:intergenic | 60.0% | |
| CGGCATCAACCAAGACACGG+TGG | + | chr7.3:32429521-32429540 | None:intergenic | 60.0% | |
| CGGCGGCATCAACCAAGACA+CGG | + | chr7.3:32429524-32429543 | None:intergenic | 60.0% | |
| TCCGTATCCGGTGGAACTCG+CGG | - | chr7.3:32429395-32429414 | MS.gene42091:CDS | 60.0% | |
| TTCACCACCGCGAGTTCCAC+CGG | + | chr7.3:32429405-32429424 | None:intergenic | 60.0% | |
| ! | CGTGTCTTGGTTGATGCCGC+CGG | - | chr7.3:32429522-32429541 | MS.gene42091:intron | 60.0% |
| ! | TCGGGTTGTAATCGGCCCGT+AGG | - | chr7.3:32430587-32430606 | MS.gene42091:intron | 60.0% |
| GGTGACGATGGGGTTACCGG+CGG | + | chr7.3:32429541-32429560 | None:intergenic | 65.0% | |
| GTATCCGGTGGAACTCGCGG+TGG | - | chr7.3:32429398-32429417 | MS.gene42091:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 32429351 | 32431702 | 32429351 | ID=MS.gene42091 |
| chr7.3 | mRNA | 32429351 | 32431702 | 32429351 | ID=MS.gene42091.t1;Parent=MS.gene42091 |
| chr7.3 | exon | 32431499 | 32431702 | 32431499 | ID=MS.gene42091.t1.exon1;Parent=MS.gene42091.t1 |
| chr7.3 | CDS | 32431499 | 32431702 | 32431499 | ID=cds.MS.gene42091.t1;Parent=MS.gene42091.t1 |
| chr7.3 | exon | 32429619 | 32429846 | 32429619 | ID=MS.gene42091.t1.exon2;Parent=MS.gene42091.t1 |
| chr7.3 | CDS | 32429619 | 32429846 | 32429619 | ID=cds.MS.gene42091.t1;Parent=MS.gene42091.t1 |
| chr7.3 | exon | 32429351 | 32429497 | 32429351 | ID=MS.gene42091.t1.exon3;Parent=MS.gene42091.t1 |
| chr7.3 | CDS | 32429351 | 32429497 | 32429351 | ID=cds.MS.gene42091.t1;Parent=MS.gene42091.t1 |
| Gene Sequence |
| Protein sequence |
