AlfalfaGEDB | MS.gene60550

M. sativa cultivar XinJiangDaYe / MS.gene60550

KEGG: K20288
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60550.t1	XP_024640583.1	98.8	917	11	0	1	917	143	1059	0.00E+00	1771.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60550.t1	Q9Z160	21.9	845	547	22	3	803	140	915	1.6e-33	146.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60550.t1	A0A396JZ67	98.8	917	11	0	1	917	143	1059	0.0e+00	1771.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049180	MS.gene60550	0.813875	2.05E-51	-1.69E-46
MS.gene049193	MS.gene60550	0.800681	1.29E-48	-1.69E-46
MS.gene049209	MS.gene60550	0.846497	2.09E-59	-1.69E-46
MS.gene050213	MS.gene60550	0.863008	3.38E-64	-1.69E-46
MS.gene051020	MS.gene60550	0.815721	7.99E-52	-1.69E-46
MS.gene052776	MS.gene60550	0.800118	1.67E-48	-1.69E-46
MS.gene054585	MS.gene60550	0.80919	2.14E-50	-1.69E-46
MS.gene054644	MS.gene60550	0.802666	5.04E-49	-1.69E-46
MS.gene055572	MS.gene60550	0.850268	1.89E-60	-1.69E-46
MS.gene056035	MS.gene60550	0.820046	8.43E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene001540	MS.gene60550	PPI
MS.gene024389	MS.gene60550	PPI
MS.gene025857	MS.gene60550	PPI
MS.gene050696	MS.gene60550	PPI
MS.gene22747	MS.gene60550	PPI
MS.gene22749	MS.gene60550	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60550.t1	MTR_1g492710	98.305	649	11	1	649	143	791	0.0	1311
MS.gene60550.t1	MTR_1g492710	95.679	162	7	641	802	930	1091	3.01e-93	318
MS.gene60550.t1	MTR_1g492720	100.000	59	0	803	861	16	74	1.14e-31	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene60550.t1	AT5G16300	61.991	934	327	11	1	917	146	1068	1147
MS.gene60550.t1	AT5G16300	60.129	933	312	10	1	917	146	1034	1100
MS.gene60550.t1	AT5G16300	59.315	934	321	12	1	917	144	1035	1078
MS.gene60550.t1	AT5G16300	60.865	879	322	10	1	862	146	1019	1068

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Find 202 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCACTTACCCTCCC+AGG	0.568735	1.2:-68831535	None:intergenic
AAACAAACCTCAACTCTAAA+AGG	0.284126	1.2:+68831320	MS.gene60550:CDS
AAACATATACCCTTGATACT+TGG	0.448713	1.2:+68831184	MS.gene60550:CDS
AAACCGGCTTTCTCAGAGAC+TGG	0.473732	1.2:+68834487	MS.gene60550:CDS
AAAGGTATGAACCATATCTC+TGG	0.433620	1.2:+68834797	MS.gene60550:intron
AAAGTAAACAAGTTCTACAG+GGG	0.712947	1.2:+68830495	MS.gene60550:CDS
AAATCTCTTCAAGAAGTTCA+TGG	0.404740	1.2:+68835919	MS.gene60550:CDS
AACACAATTTCTGCAGTAGT+TGG	0.479333	1.2:+68830704	MS.gene60550:CDS
AACTGTAGATGCATTCCCGC+TGG	0.560911	1.2:-68831224	None:intergenic
AACTTTGAGCACGCCTGGGA+GGG	0.546184	1.2:+68831522	MS.gene60550:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	68829175	68836593	68829175	ID=MS.gene60550
chr1.2	mRNA	68829175	68836593	68829175	ID=MS.gene60550.t1;Parent=MS.gene60550
chr1.2	exon	68829175	68829432	68829175	ID=MS.gene60550.t1.exon1;Parent=MS.gene60550.t1
chr1.2	CDS	68829175	68829432	68829175	ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1
chr1.2	exon	68830050	68831543	68830050	ID=MS.gene60550.t1.exon2;Parent=MS.gene60550.t1
chr1.2	CDS	68830050	68831543	68830050	ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1
chr1.2	exon	68833248	68833442	68833248	ID=MS.gene60550.t1.exon3;Parent=MS.gene60550.t1
chr1.2	CDS	68833248	68833442	68833248	ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1
chr1.2	exon	68834248	68834528	68834248	ID=MS.gene60550.t1.exon4;Parent=MS.gene60550.t1
chr1.2	CDS	68834248	68834528	68834248	ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1
chr1.2	exon	68834801	68834980	68834801	ID=MS.gene60550.t1.exon5;Parent=MS.gene60550.t1
chr1.2	CDS	68834801	68834980	68834801	ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1
chr1.2	exon	68835863	68836037	68835863	ID=MS.gene60550.t1.exon6;Parent=MS.gene60550.t1
chr1.2	CDS	68835863	68836037	68835863	ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1
chr1.2	exon	68836423	68836593	68836423	ID=MS.gene60550.t1.exon7;Parent=MS.gene60550.t1
chr1.2	CDS	68836423	68836593	68836423	ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1

Gene Sequence

>MS.gene60550

ATGTTTCTAGAAGCTGCTTCGCGTTATTCTCGTGCTAAGCACGTGCATCAGCGTCTGTTTTTGGATTCTGATGAGGGTAAGGTTAAGATCTTGGCGAGTTTTCCTCTTCTTCAGCATCAGTGGCAGATTGTCGAGAGTTTTAGAGCTCAGATCTCGCAGCGGAGTCGGGATCGTTTGCTTGATCGTGGACTTCGTATTGATGCTTATGCTGATGCTCTTGCTGCTGTAGCTGTTATCGATGAATTTCAGCCGGAGAAGGTAATGTTGTTTGTTTGTTTATCAGTCTGGATTGGGGATGGGTAGTTAAAGTGTGTTTAGTTGCTTTCATTATGTATTGTGGATTTATGTGATTTGAGCAACGTTGTTAAATAGTAGTAGCTATAGCAGTGCTGTAGGGTAGCAGTCAAATGGTGGTGTATCGTCCCCATTGTTACAGTCTAGTAGTGGTCTGGCTGTGGGACATTTTATGTGGAATCTGGGATCCGGGTCTCCACACTTCCCTGTCCCCGTCTGTGTTTATTTAAGTATGTGTTGGCCACTGAGCCAGCAGCAAAAAAAGAAAATAGTGCTGTATCATGACGGAATTTGAGCAAACAACTGTTTTTGCAATCACAATTGACAACACTGGATTTGAGATGTGGTTAGTTAGTTGGTTAGTTAGGTGTATAGATTTTAGTTTGATGAGTGTACTTTTATTTGTTCATGAAAAACAGGTCGATGTGAGTTGTTTTGGGTTTGGATTGAGAATTTTGGTTGTAGATGGTGTGTCATTTGCAAGTTTTTATAGTTTTTAGATTTGTGTGATTTTCGATGTGGGCAGTTGGTTAATTCTTCTTCAATTGGTGGGTATAAACTGATTAATTGATGAAAAACAGGTGTTGGACTTGTTTCTGGAATCGAGGAAGTCGTGGATATCGCAAGTTTTGGGTAATGCTGGTGCCGGTGACGATTCTTCTTTTGTGGTTTCTGTCTTGTGTGATGTGTTAGGAATCATTCAGGTCACTCTGGGTCAGGTGGGTGAGTCATTTTTACAAGTGTTGAATGATATGCCCCTTTTCTACAAAGTCATTCTTGGATCTCCTCCAGCTTCACAATTGTTTGGCGGGATTCCCAATCCTGAAGAGGAAGTTAAGCTTTGGAAGTCTTTTAGAGATAAGCTGGAATCGGTTATGGTAATGCTTGACAAACGTTACATTGCTGATACTTGTTTTGCTTGGTTGAAGGAATGTGTAAATAAGATAAGTGGAAGAAATTTAATTGATGCCATTGGCAGTGGCCAGGAGCTTGCTTCTGCAGAGAAATCAATAAGGGAGACAATGGAAAGTAAACAAGTTCTACAGGGGAGTCTAGAATGGCTGAAGAGTGTTTTCGGATCTGAGATTGAGTTGCCTTGGAGTAGGATTCGGGAACTCGTTTTGGAAGATGATTCTGATCTTTGGGTTGAGATATTTGAGGGTGCTTTTCTTGGTAGGATGAAAGCAATCATTGACTTGAGATTTAGGGAGTTAACCAGCACGGTTGATGTGGTGAACACAATTTCTGCAGTAGTTGGCTCTTTCACCAAACAGAATGATGTTCAGATGTACTTGACCAGACCTTATACAGCAGGCGGTGTTTGGTTTCTAGAATCCAATGCCAAAAAAACTGGAGTTGCTTCTGGGTTCAAAGTCCACCCTGAAGAAAGTGAATTTCAGTCTTGTCTTAATGCCTATTTTGGTCCTGAAGTAAGTCGAATCAGGGATGCAGTTGACGTTTCTTGTCAGAGCATCCTTGAGGATCTGTTAAGTTTCTTAGAATCTCCGAAGGCCTCCCAAAGACTGAGGGATCTAGCACCATATCTGCAAAGTAAATGTTATGAAAGTCTGTCTTCTATATTGATTGCATTGCAAAAAGAACTTGATAGTTTATATGTCTCGATGGAAAGTGGTGACAAAGAGGTACCAACAGTTGTTGCTGTTGAAAAATCTCTTTTCATTGGAAGGTTATTGTTTGCATTCCAAAACCATTCTAAACATATACCCTTGATACTTGGTTCTCCCAGATTTTGGGCCAGCGGGAATGCATCTACAGTTGGGAAATTACCATCTCTAGTGAAACATTCTCGTTTTGGATCTGATTCTGCTATCTGTGATAGTCCAGGAAGACAAACAAACCTCAACTCTAAAAGGCAAAATTCTTCTGCCACAGCAGCCTTGTTTGGAGCAAGAGAAGATGCAAGCCATGAATTGGAAGAATTGAATAAGACTATAGGTGATCTATGTATTAGAGCCTACAACTTATGGATACTATGGATGTCAGATGAGCTTGCTGCTATTGTCTCTCAGGATCTTAAACAAGATGATGCCTTAACTTTGAGCACGCCTGGGAGGGTAAGTGACATTTTTTCGTCTTCCCCCTGTTGTTTATTCATTTTCCGTGAATTTTGATGGTTTAAGATTGTTTTTTTCTTATGGTTATATCTTATTATTAGTTTTCCTCCGATCAGCCTTTAATTTTTGTAGAACGATTATCTTCTACAAGAGCTTGTTTGTTGCTTTTACATCTTATTTAATAAAATAGAAATTCCTAAGGCGAGAAGAAAAAACAATGGAAAAAGCATGAACAAGTGGGAAATTGACTTATAAAATTAATATAAAAACATAAAACAGTAGTCGGAAAGGCCTTTTAAAAGATATTCTGGTCAAACAAAACTTGTCCGTTATTCCCATTTGACCAATTATATCACACAGGATACCATATAATCATATTCTGATCTGATAAAAACTCTACTGAAACATACATGTGAACAACTAAGAAATACATGATTTATATTATGTGAAGCTTGGAGCTGATATTATGGAGGAAGCACTGAAGTACTATACCATAATTCATAAATAAATATTACTATTTCGTTAATTAAATTTTCCTAATGTCTTGCCAATGAAATCATCTGTTAGCAGACTGGTCCATTTCAACATTCATTTTCTCAGTCTATGAAAACTGATCAAACCAAATTTCTGTTACCGTCACCATCTTTGAGAATTATGACAAGGAATTGAGCAAACCTCATATCCAATTATTTCAGAGCTCTATTGTAAATATTGTTTTGAATCAGTTGAGAATAATTGGATTTGTTATATGGCTTTGTCTTTGATCAGTTTCCTTTAAGATCCATATTCTTGAAAACAAAGTTTATTGTTTTCCGCAATCATTACCTCAATAGTAGTAGTATTGTACTAGAAATATGCTAACGAGCATGTGATGATAAGGTTTTTTCACCTTAACTTCAATGAATCAGTGGCATTCAGCTTGACTAATTTCCGTCCTTTAAAACTTCTATTGCTCTCAAACCATGCAGTGATACATGCACACAAGTGGAGAACCTTCCTTAAGTTAAGTGGTGTTACTTGGTAGAAAGAGCCACCACTGAAATACCAAGAAGATATTGATATATATATATCCCTTAATTGAATTTATTCTAGCAGTTAGCAATTTACCGAGGTTAGTCATGTTAAGACCAAAACAATTGAAATGAATTGAAAATTTGTTAAGGAAGTACATGCTCGCTTTGATATTCTGCGTTCCAATACAAAGAATTTTATGGGTTTTGAATCTTTAACTTTCATCATGTGTTTACTTTGGAAGAGATATTAAATTATAAGATGATATTAAAAACATTGCTTTCAATCGATTTATTAGGAATTCGGTTTTTGTCAGAGCTCAATAGTGCCAGTCAGTGCTTCTAGCAAACATACTTTGAGATTAGTCTTGGCTGTTATAAAGCTTTAGTGATGCCAGCTTAGTTAGCATTACACTTATCATCGTCAACATCATCTTTTCTTTCTCTATATGGAACCTTATACCTTCTGAAAACTCGCGGGCTTTCAATATAGAACTAAATATTTTGCTTACCTTTTTGTAGGGATGGTAGGTACCATCAAAGCATAATAATGTTATTATCATTGCTAATCATTGATAATACGTCTACCACTGCTACTATTCTTTTATTGAGGACTCTTTCTTGGTGATACAAACAACCAAGATCTTATAGCCTTTTAATCTAGAAGTTGCTCATGCTTTTGTTTACTGAACAGGGATGGGAGGATATCGCCGTCAAGCAAGATCAGTCTGATGAGAACCAATCGGAGATGAAAATATCTCTTCCGTCTATGCCTTCTCTATATATAATCTCATTTCTATTTAGAGCGTGTGAAGAAGTTCATCGAGTTGGAGGTCATGTACTTGACAAGAAGATTTTGCATAAACTTGCATCAAGGTTATTGGAAAAGGTAGGTTTTCTGATTTGTTAATCCATTTGATCTTAGTCCACTAGTGTGGCTGTTTTTTTTTTACTCCCAGCCTTTCCTTTAGGTACAATTATTTTTCTATAAATGAATTTTCGTTGAAAAAAAAAAGAGTAAATAATGGAGGGGATTATATATCCACAAATTAATAGAATGCAAAAAACAATAAAAAAATATGAGAAGTGAACTAAGAATGCAGTGCTGCAAATGCTGCATGATCTCTACAATATTCCTCTTGTTACTCTACTGTAGTTTTTTTTTACCTTCTGGGGGTTTTAAAGTCACTTTTGTCCCATTAAATTGATATGATATTTGAGTGTCTTTCTAATTTGAATCCCCAAGTTAAGAATACACAGAAGTTAGTCTGTGATATGTGGTATTTTCTTTGTCAGCTTACTTAAAATGGAGATAATTTGTAATCTTTGATCAATTTCTGATAGAAAATTTAGTTGGTATTCTTAAATTGACACATCCACTGTGAAATTTTATAGCTACTATGCAATTATGACATGTGACACTAAGATTTCAGAGAAATGGAGATAATCATAATGTCCCCAAGACCATACTGTTCCCACTTTTAAAGACCACTTTTAAATAATTTATTGAAACACTAGAATGAATTATGAGTAAGTGGCTAAAGAGAATTGAAAAATAAAATGATACAGTTTCAGTGAGGCCCTTTATGCACCAGATGATGGATTATCAAGTAAATTTGAACATACAATGAGGCCCTCTATGTGCTTGACTTATTGTACATTTGTATATACAATGACTGTATTTTATCATACAGGTAGTTGGAATCTTTGAGGCCTTTCTTTCCACTGAAGTGGGTGGTGCTCATCAAGTGACAGAAAAAGGAGTCTTGCAGCTTTTGTTAGATGTCAAATTTGTCATTGATGTTCTCTCTGGTGGTGATTCAAATTTGGTTGGGGAATTATCTAGTAACCCAAAGGCAAAGTCTTCTCTTAGAAGAAAGCAGGGCCAAAGTTTGACAATCTCAGCCATTAGAGAACGGTCTAATCAGTTGTTAAACCGGCTTTCTCAGAGACTGGATCCTATAGACTGGCTTACGTAAGTTTCTCATTATTCTGTTCAAGCTTTTTCTTTCTTTCGATTCAACAGTACATCGGAAGGACCATCGGAGCACAGTTCATGGTGGCTTATGGAATAATAACTAAATTAGGGAAAATATAGGAAAAAGACTGATTGTAGACTGTAGTGTGTGTTTCTTGTGCAAGGATAAATTAGTAATGGGCAATAGTTTTTCTTTTAGTGATTGTTTGCTGTCATCTCAAGTTTTCTCCTTATAATCTGACAATGATTTCTTATCTACATGTGTAAAGGTATGAACCATATCTCTGGGAGAATGAGAGGCAATCGTATCTACGACATGCTGTTCTTTTTGGTTTCTTTGTGCAACTTAATCGAATGTACACAGATACTGTACAGAAACTGCCTACTAATTCAGAATCTAATACTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGGTCAGTTTGATATTGTAATTTATCTATTCTTTGTCCATCTTTTTACAGTGCACAGCTTTTTGCGAGTCTCTCTTACCATCATTCTGTATATATTTTAATTTAAATTCAATTATTTATTCCGTTGACTGAGGCTTTATATATATATTTTTTTATTTCCTTCTTTTTATCATTACATGTGATATAGGGTCCGTTTGTTATAAATTTTAAAAAAAATAGAAAATTGCTTGTATTATTTTTATGAAAACGTATCCAAAAAAAAAAAAAAATAGTAAAAGTTATTTCAAACTCATTTGTTATAAATTAAAAGTGTAATTTTGACATTCATTAATTTAGATATGCATTGTTATAAACTTAACATTATAAAAACCACATACTTTTTCAAAAAGATATCTCTCAAAAATGATTTTTCATTTTAAGCATTTTTTGATATTTTATTATCCCTAAAAAGTTGTACCAAAAGGATGAAATACTAAAAATGACTTTCTATGAGAAGCTATTCGAACTAATTTCTCATTTGAAGCTTTCTTTACAAATTCTTTGTTAAAAAAATTATAGCAAAAATATGATATGCTATAAAAATCATTTTAAAAAAAAAGCTATAACAGACCCCTTAGCTTCCCATAGATAGGGTAAATATACAGCTCAACTGTAATCCCTCTTAATCCTCATAATACTAGAGGTTCCTTTTTCTCTACAGCATGTGTTATACTTTATATTGTATCATTCCTAATTTAACGAGACAAGAAATTCATCAGTTTCAAGTTATTCAATGACTTTTACGGCAGATCTGCTAACAAACCTTTTAATATACCAAAGCTAGTAATTGACAACCTAAAATTTCTTCTTATTTACAAACTTACATCTTAATCGTGGTAAATCCAGTGCTCCAGCATTGTCCTCTAGAGGGCCAAAGAAGACATTCACCCCATCTTCAAATGAAATCTCTTCAAGAAGTTCATGGAATTCAATTACAAATGGAGATCTTTCTCAAAAGATAAATCTGGATGACAGCTCAAGTCTTGGGGTGGCAGCACCATTTTTGAAGTCTTTCATGCAAGTAAGTTTTTATCATATTCTGGTATTATTTTTTGCCTCATTGCATTCTAATGCTGGACACTATATTCTTTGAATAACAAATCACAAGATGTTGATATTCTGCAACTCCATGATTTCCTAATCATCACACTCATGGCACCACAATAAACTGTATCTATTTGTGCAGCCATACTAACATGAACATTTTTTTCTTGTCACACGTTAACCTTATATTTTGTATACATGGTGGAGCAACTGTTCTACTAAATTTCAATCTGTTAACCAAAAAAACAAATGGGCTATGAATTGCTCAAAACATGAAGAATGCCTCAACTATTTTATTTGGACTGTACTGTTGCAGTATTCAACATAGTTTTGTCAAGACTTCATACAAAATTTTTTTCTAGGTTGGAAGCAGGTTTGGGGAGAGTACTTTTAAACTGGGATCAATGCTAACTGATGGGCAAGTTGGTATTTTTAAGGATAGATCTGCAGCGGCTATGTCCACATTTGGAGATATTCTACCTGCTCAGGCAGCTGGTCTTCTCTCATCTTTTACTGCTCCCAGATCAGACTGA

Protein sequence

>MS.gene60550.t1

MFLEAASRYSRAKHVHQRLFLDSDEGKVKILASFPLLQHQWQIVESFRAQISQRSRDRLLDRGLRIDAYADALAAVAVIDEFQPEKVLDLFLESRKSWISQVLGNAGAGDDSSFVVSVLCDVLGIIQVTLGQVGESFLQVLNDMPLFYKVILGSPPASQLFGGIPNPEEEVKLWKSFRDKLESVMVMLDKRYIADTCFAWLKECVNKISGRNLIDAIGSGQELASAEKSIRETMESKQVLQGSLEWLKSVFGSEIELPWSRIRELVLEDDSDLWVEIFEGAFLGRMKAIIDLRFRELTSTVDVVNTISAVVGSFTKQNDVQMYLTRPYTAGGVWFLESNAKKTGVASGFKVHPEESEFQSCLNAYFGPEVSRIRDAVDVSCQSILEDLLSFLESPKASQRLRDLAPYLQSKCYESLSSILIALQKELDSLYVSMESGDKEVPTVVAVEKSLFIGRLLFAFQNHSKHIPLILGSPRFWASGNASTVGKLPSLVKHSRFGSDSAICDSPGRQTNLNSKRQNSSATAALFGAREDASHELEELNKTIGDLCIRAYNLWILWMSDELAAIVSQDLKQDDALTLSTPGRGWEDIAVKQDQSDENQSEMKISLPSMPSLYIISFLFRACEEVHRVGGHVLDKKILHKLASRLLEKVVGIFEAFLSTEVGGAHQVTEKGVLQLLLDVKFVIDVLSGGDSNLVGELSSNPKAKSSLRRKQGQSLTISAIRERSNQLLNRLSQRLDPIDWLTYEPYLWENERQSYLRHAVLFGFFVQLNRMYTDTVQKLPTNSESNTLRCSTVPRFKYLPISAPALSSRGPKKTFTPSSNEISSRSSWNSITNGDLSQKINLDDSSSLGVAAPFLKSFMQVGSRFGESTFKLGSMLTDGQVGIFKDRSAAAMSTFGDILPAQAAGLLSSFTAPRSD