Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60550.t1 | XP_024640583.1 | 98.8 | 917 | 11 | 0 | 1 | 917 | 143 | 1059 | 0.00E+00 | 1771.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60550.t1 | Q9Z160 | 21.9 | 845 | 547 | 22 | 3 | 803 | 140 | 915 | 1.6e-33 | 146.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60550.t1 | A0A396JZ67 | 98.8 | 917 | 11 | 0 | 1 | 917 | 143 | 1059 | 0.0e+00 | 1771.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene60550 | 0.813875 | 2.05E-51 | -1.69E-46 |
| MS.gene049193 | MS.gene60550 | 0.800681 | 1.29E-48 | -1.69E-46 |
| MS.gene049209 | MS.gene60550 | 0.846497 | 2.09E-59 | -1.69E-46 |
| MS.gene050213 | MS.gene60550 | 0.863008 | 3.38E-64 | -1.69E-46 |
| MS.gene051020 | MS.gene60550 | 0.815721 | 7.99E-52 | -1.69E-46 |
| MS.gene052776 | MS.gene60550 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene054585 | MS.gene60550 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene054644 | MS.gene60550 | 0.802666 | 5.04E-49 | -1.69E-46 |
| MS.gene055572 | MS.gene60550 | 0.850268 | 1.89E-60 | -1.69E-46 |
| MS.gene056035 | MS.gene60550 | 0.820046 | 8.43E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22747 | MS.gene60550 | PPI |
| MS.gene024389 | MS.gene60550 | PPI |
| MS.gene22749 | MS.gene60550 | PPI |
| MS.gene050696 | MS.gene60550 | PPI |
| MS.gene025857 | MS.gene60550 | PPI |
| MS.gene001540 | MS.gene60550 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60550.t1 | MTR_1g492710 | 98.305 | 649 | 11 | 0 | 1 | 649 | 143 | 791 | 0.0 | 1311 |
| MS.gene60550.t1 | MTR_1g492710 | 95.679 | 162 | 7 | 0 | 641 | 802 | 930 | 1091 | 3.01e-93 | 318 |
| MS.gene60550.t1 | MTR_1g492720 | 100.000 | 59 | 0 | 0 | 803 | 861 | 16 | 74 | 1.14e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60550.t1 | AT5G16300 | 61.991 | 934 | 327 | 11 | 1 | 917 | 146 | 1068 | 0.0 | 1147 |
| MS.gene60550.t1 | AT5G16300 | 60.129 | 933 | 312 | 10 | 1 | 917 | 146 | 1034 | 0.0 | 1100 |
| MS.gene60550.t1 | AT5G16300 | 59.315 | 934 | 321 | 12 | 1 | 917 | 144 | 1035 | 0.0 | 1078 |
| MS.gene60550.t1 | AT5G16300 | 60.865 | 879 | 322 | 10 | 1 | 862 | 146 | 1019 | 0.0 | 1068 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGTGTTGGACTTGTTTC+TGG | 0.129159 | 1.2:+68830046 | MS.gene60550:intron |
| CTCTGGTGGTGATTCAAATT+TGG | 0.135515 | 1.2:+68834361 | MS.gene60550:CDS |
| TACTTGGTTCTCCCAGATTT+TGG | 0.137160 | 1.2:+68831200 | MS.gene60550:CDS |
| CAATCATTGACTTGAGATTT+AGG | 0.165545 | 1.2:+68830654 | MS.gene60550:CDS |
| TTGAGGTTTGTTTGTCTTCC+TGG | 0.188667 | 1.2:-68831310 | None:intergenic |
| TCTTGTCTTAATGCCTATTT+TGG | 0.191178 | 1.2:+68830869 | MS.gene60550:CDS |
| TAAACTTGCATCAAGGTTAT+TGG | 0.209158 | 1.2:+68833415 | MS.gene60550:CDS |
| TGGAAGATGATTCTGATCTT+TGG | 0.232967 | 1.2:+68830591 | MS.gene60550:CDS |
| TCTAGGTTGGAAGCAGGTTT+GGG | 0.249144 | 1.2:+68836418 | MS.gene60550:intron |
| TTCTAGGTTGGAAGCAGGTT+TGG | 0.258849 | 1.2:+68836417 | MS.gene60550:intron |
| ACTTACTTCAGGACCAAAAT+AGG | 0.266675 | 1.2:-68830882 | None:intergenic |
| TAACATTTACTTTGCAGATA+TGG | 0.267231 | 1.2:-68831007 | None:intergenic |
| TATTCAATTCTTCCAATTCA+TGG | 0.270315 | 1.2:-68831393 | None:intergenic |
| GTGCTAGATCCCTCAGTCTT+TGG | 0.274785 | 1.2:-68830985 | None:intergenic |
| GACTGAAATTCACTTTCTTC+AGG | 0.282420 | 1.2:-68830848 | None:intergenic |
| AAACAAACCTCAACTCTAAA+AGG | 0.284126 | 1.2:+68831320 | MS.gene60550:CDS |
| GTATATGTTTAGAATGGTTT+TGG | 0.284554 | 1.2:-68831171 | None:intergenic |
| TGCTAGATCCCTCAGTCTTT+GGG | 0.291204 | 1.2:-68830984 | None:intergenic |
| TCTGCCACAGCAGCCTTGTT+TGG | 0.296679 | 1.2:+68831352 | MS.gene60550:CDS |
| GCTCATCAAGTGACAGAAAA+AGG | 0.297837 | 1.2:+68834293 | MS.gene60550:CDS |
| AATCATTGACTTGAGATTTA+GGG | 0.303397 | 1.2:+68830655 | MS.gene60550:CDS |
| ATTCCCGCTGGCCCAAAATC+TGG | 0.308945 | 1.2:-68831212 | None:intergenic |
| CTAGTGAAACATTCTCGTTT+TGG | 0.316077 | 1.2:+68831262 | MS.gene60550:CDS |
| CCTCCAGCTTCACAATTGTT+TGG | 0.317405 | 1.2:+68830254 | MS.gene60550:CDS |
| TAGGATTCGGGAACTCGTTT+TGG | 0.320530 | 1.2:+68830571 | MS.gene60550:CDS |
| CAAAGCTTAACTTCCTCTTC+AGG | 0.325723 | 1.2:-68830290 | None:intergenic |
| GGAAGATGATTCTGATCTTT+GGG | 0.338215 | 1.2:+68830592 | MS.gene60550:CDS |
| CTCTCATTCTCCCAGAGATA+TGG | 0.340747 | 1.2:-68834808 | None:intergenic |
| TCTGTCTTGTGTGATGTGTT+AGG | 0.343702 | 1.2:+68830140 | MS.gene60550:CDS |
| CCTACAACTTATGGATACTA+TGG | 0.344473 | 1.2:+68831443 | MS.gene60550:CDS |
| CTTCTGCAGAGAAATCAATA+AGG | 0.352799 | 1.2:+68830462 | MS.gene60550:CDS |
| GATGGGGTGAATGTCTTCTT+TGG | 0.353422 | 1.2:-68835888 | None:intergenic |
| CTAAGAGAAGACTTTGCCTT+TGG | 0.354459 | 1.2:-68834404 | None:intergenic |
| CAAACACCGCCTGCTGTATA+AGG | 0.362242 | 1.2:-68830770 | None:intergenic |
| GTATTAGAGCCTACAACTTA+TGG | 0.363762 | 1.2:+68831434 | MS.gene60550:CDS |
| GTCGTGGATATCGCAAGTTT+TGG | 0.367262 | 1.2:+68830079 | MS.gene60550:CDS |
| AGTTGCCTTGGAGTAGGATT+CGG | 0.376951 | 1.2:+68830558 | MS.gene60550:CDS |
| GCCTTAACTTTGAGCACGCC+TGG | 0.378141 | 1.2:+68831517 | MS.gene60550:CDS |
| CTTATACAGCAGGCGGTGTT+TGG | 0.379413 | 1.2:+68830771 | MS.gene60550:CDS |
| TCCCTGATTCGACTTACTTC+AGG | 0.380422 | 1.2:-68830893 | None:intergenic |
| TTAACTTCCTCTTCAGGATT+GGG | 0.381330 | 1.2:-68830284 | None:intergenic |
| CAAGAATGACTTTGTAGAAA+AGG | 0.383535 | 1.2:-68830226 | None:intergenic |
| GTCCTGAAGTAAGTCGAATC+AGG | 0.384077 | 1.2:+68830891 | MS.gene60550:CDS |
| CTTAACTTCCTCTTCAGGAT+TGG | 0.385326 | 1.2:-68830285 | None:intergenic |
| AGAAGATGCAAGCCATGAAT+TGG | 0.386596 | 1.2:+68831381 | MS.gene60550:CDS |
| TGGATGACAGCTCAAGTCTT+GGG | 0.386894 | 1.2:+68835982 | MS.gene60550:CDS |
| GTATTAGATTCTGAATTAGT+AGG | 0.398427 | 1.2:-68834913 | None:intergenic |
| GTGGTGATTCAAATTTGGTT+GGG | 0.399574 | 1.2:+68834366 | MS.gene60550:CDS |
| GGGTCATCATCAGTCTGATC+TGG | 0.399832 | 1.2:-68836580 | None:intergenic |
| CTCAGTCTTTGGGAGGCCTT+CGG | 0.399852 | 1.2:-68830974 | None:intergenic |
| GTTGCCTTGGAGTAGGATTC+GGG | 0.401004 | 1.2:+68830559 | MS.gene60550:CDS |
| AAGAATGACTTTGTAGAAAA+GGG | 0.403222 | 1.2:-68830225 | None:intergenic |
| AAATCTCTTCAAGAAGTTCA+TGG | 0.404740 | 1.2:+68835919 | MS.gene60550:CDS |
| CTGAAGAGGAAGTTAAGCTT+TGG | 0.406834 | 1.2:+68830291 | MS.gene60550:CDS |
| TAAGAGAAGACTTTGCCTTT+GGG | 0.409198 | 1.2:-68834403 | None:intergenic |
| TTTGTCATTGATGTTCTCTC+TGG | 0.410244 | 1.2:+68834344 | MS.gene60550:CDS |
| GGAAAGTAAACAAGTTCTAC+AGG | 0.414373 | 1.2:+68830493 | MS.gene60550:CDS |
| AGATAAGCTGGAATCGGTTA+TGG | 0.414553 | 1.2:+68830325 | MS.gene60550:CDS |
| GCAGCGGCTATGTCCACATT+TGG | 0.416741 | 1.2:+68836507 | MS.gene60550:CDS |
| CTGATTAGACCGTTCTCTAA+TGG | 0.417724 | 1.2:-68834459 | None:intergenic |
| AAGCTCCTGGCCACTGCCAA+TGG | 0.422355 | 1.2:-68830438 | None:intergenic |
| CCATAGTATCCATAAGTTGT+AGG | 0.423408 | 1.2:-68831443 | None:intergenic |
| TCTTTCTCAAAAGATAAATC+TGG | 0.424373 | 1.2:+68835962 | MS.gene60550:CDS |
| GAAGAGATTTCATTTGAAGA+TGG | 0.424725 | 1.2:-68835906 | None:intergenic |
| TGCATCAAGGTTATTGGAAA+AGG | 0.425874 | 1.2:+68833421 | MS.gene60550:CDS |
| GCCTTTCTTTCCACTGAAGT+GGG | 0.425997 | 1.2:+68834266 | MS.gene60550:CDS |
| CATCTGAACATCATTCTGTT+TGG | 0.427866 | 1.2:-68830735 | None:intergenic |
| CCCAGGCGTGCTCAAAGTTA+AGG | 0.428583 | 1.2:-68831518 | None:intergenic |
| ACTGAAATTCACTTTCTTCA+GGG | 0.430090 | 1.2:-68830847 | None:intergenic |
| AAAGGTATGAACCATATCTC+TGG | 0.433620 | 1.2:+68834797 | MS.gene60550:intron |
| GGTGGTGATTCAAATTTGGT+TGG | 0.439017 | 1.2:+68834365 | MS.gene60550:CDS |
| ATCAGACTGATCTTGCTTGA+CGG | 0.443865 | 1.2:-68833264 | None:intergenic |
| GCTTGCTGCTATTGTCTCTC+AGG | 0.444950 | 1.2:+68831477 | MS.gene60550:CDS |
| AAACATATACCCTTGATACT+TGG | 0.448713 | 1.2:+68831184 | MS.gene60550:CDS |
| TCATGGAATTCAATTACAAA+TGG | 0.449641 | 1.2:+68835936 | MS.gene60550:CDS |
| CCAGCTTCACAATTGTTTGG+CGG | 0.452392 | 1.2:+68830257 | MS.gene60550:CDS |
| GAAGAATTGAATAAGACTAT+AGG | 0.452669 | 1.2:+68831403 | MS.gene60550:CDS |
| TTTGGATTCTGATGAGGGTA+AGG | 0.452923 | 1.2:+68829234 | MS.gene60550:CDS |
| CAGCTTCACAATTGTTTGGC+GGG | 0.453635 | 1.2:+68830258 | MS.gene60550:CDS |
| AAGAGATTTCATTTGAAGAT+GGG | 0.456289 | 1.2:-68835905 | None:intergenic |
| GTCATTGATGTTCTCTCTGG+TGG | 0.462199 | 1.2:+68834347 | MS.gene60550:CDS |
| TGGCTGAGATTGTCAAACTT+TGG | 0.462256 | 1.2:-68834439 | None:intergenic |
| TCAAGGGTATATGTTTAGAA+TGG | 0.463200 | 1.2:-68831177 | None:intergenic |
| GGTTTAAATACCTCCCCATC+AGG | 0.463246 | 1.2:+68834959 | MS.gene60550:CDS |
| TGAGGGTAAGGTTAAGATCT+TGG | 0.463258 | 1.2:+68829246 | MS.gene60550:CDS |
| AGAAGACCAGCTGCCTGAGC+AGG | 0.465139 | 1.2:-68836540 | None:intergenic |
| CTGGATGACAGCTCAAGTCT+TGG | 0.465347 | 1.2:+68835981 | MS.gene60550:CDS |
| GGCCTTTCTTTCCACTGAAG+TGG | 0.465406 | 1.2:+68834265 | MS.gene60550:CDS |
| TGGAGATATTCTACCTGCTC+AGG | 0.465773 | 1.2:+68836527 | MS.gene60550:CDS |
| TCAGGTCACTCTGGGTCAGG+TGG | 0.469957 | 1.2:+68830169 | MS.gene60550:CDS |
| GATCTGAGATTGAGTTGCCT+TGG | 0.470997 | 1.2:+68830546 | MS.gene60550:CDS |
| GGTCTAATCAGTTGTTAAAC+CGG | 0.471854 | 1.2:+68834471 | MS.gene60550:CDS |
| AGAAATTTAATTGATGCCAT+TGG | 0.473388 | 1.2:+68830422 | MS.gene60550:CDS |
| AAACCGGCTTTCTCAGAGAC+TGG | 0.473732 | 1.2:+68834487 | MS.gene60550:CDS |
| TCAGATCTCGCAGCGGAGTC+GGG | 0.474276 | 1.2:+68829321 | MS.gene60550:CDS |
| TGATGGGGAGGTATTTAAAC+CGG | 0.475659 | 1.2:-68834957 | None:intergenic |
| ACTTACGTAAGCCAGTCTAT+AGG | 0.479011 | 1.2:-68834512 | None:intergenic |
| AACACAATTTCTGCAGTAGT+TGG | 0.479333 | 1.2:+68830704 | MS.gene60550:CDS |
| ATTCTACCTGCTCAGGCAGC+TGG | 0.479804 | 1.2:+68836534 | MS.gene60550:CDS |
| GTCTTCTCTTAGAAGAAAGC+AGG | 0.480005 | 1.2:+68834415 | MS.gene60550:CDS |
| CATTCAGGTCACTCTGGGTC+AGG | 0.483438 | 1.2:+68830166 | MS.gene60550:CDS |
| CCGCCAAACAATTGTGAAGC+TGG | 0.485468 | 1.2:-68830257 | None:intergenic |
| ACAGGTAGTTGGAATCTTTG+AGG | 0.485788 | 1.2:+68834244 | MS.gene60550:intron |
| TGATGTGTTAGGAATCATTC+AGG | 0.486504 | 1.2:+68830151 | MS.gene60550:CDS |
| TTAATTGATGCCATTGGCAG+TGG | 0.486951 | 1.2:+68830428 | MS.gene60550:CDS |
| TTCCCGCTGGCCCAAAATCT+GGG | 0.488521 | 1.2:-68831211 | None:intergenic |
| ACAAACAACATTACCTTCTC+CGG | 0.489314 | 1.2:-68829424 | None:intergenic |
| TCTGGGAGAACCAAGTATCA+AGG | 0.496917 | 1.2:-68831194 | None:intergenic |
| AGGAATCATTCAGGTCACTC+TGG | 0.498232 | 1.2:+68830160 | MS.gene60550:CDS |
| TGATGCCATTGGCAGTGGCC+AGG | 0.505848 | 1.2:+68830433 | MS.gene60550:CDS |
| CTTTGGGTTGAGATATTTGA+GGG | 0.508784 | 1.2:+68830608 | MS.gene60550:CDS |
| CGAGAATGTTTCACTAGAGA+TGG | 0.508905 | 1.2:-68831256 | None:intergenic |
| AGCGGGAATGCATCTACAGT+TGG | 0.508933 | 1.2:+68831226 | MS.gene60550:CDS |
| TTCCTCTTCTTCAGCATCAG+TGG | 0.509680 | 1.2:+68829275 | MS.gene60550:CDS |
| CTCAGATCTCGCAGCGGAGT+CGG | 0.511516 | 1.2:+68829320 | MS.gene60550:CDS |
| TGCTCCAAACAAGGCTGCTG+TGG | 0.512339 | 1.2:-68831356 | None:intergenic |
| TGGTGATTCAAATTTGGTTG+GGG | 0.513230 | 1.2:+68834367 | MS.gene60550:CDS |
| ACCGCCTGCTGTATAAGGTC+TGG | 0.515915 | 1.2:-68830765 | None:intergenic |
| ACCCACTTCAGTGGAAAGAA+AGG | 0.517882 | 1.2:-68834267 | None:intergenic |
| ATCTTCTCTTGCTCCAAACA+AGG | 0.518368 | 1.2:-68831365 | None:intergenic |
| TTCTACAGGGGAGTCTAGAA+TGG | 0.519002 | 1.2:+68830507 | MS.gene60550:CDS |
| CGATGAATTTCAGCCGGAGA+AGG | 0.522546 | 1.2:+68829411 | MS.gene60550:CDS |
| TGCCACTGATGCTGAAGAAG+AGG | 0.523386 | 1.2:-68829277 | None:intergenic |
| TCTTTGGGTTGAGATATTTG+AGG | 0.524872 | 1.2:+68830607 | MS.gene60550:CDS |
| TCTCTGCAGAAGCAAGCTCC+TGG | 0.525434 | 1.2:-68830451 | None:intergenic |
| TGAGGTGTTCTACAGTTCCC+CGG | 0.527851 | 1.2:+68834938 | MS.gene60550:CDS |
| GAAGAAGTTCATCGAGTTGG+AGG | 0.528343 | 1.2:+68833365 | MS.gene60550:CDS |
| GGCCCTCTAGAGGACAATGC+TGG | 0.528993 | 1.2:-68835867 | None:intergenic |
| AGATTGAGTTGCCTTGGAGT+AGG | 0.532804 | 1.2:+68830552 | MS.gene60550:CDS |
| CAATATCAAACTGACCTGAT+GGG | 0.532941 | 1.2:-68834973 | None:intergenic |
| TTCTGCAGAGAAATCAATAA+GGG | 0.533059 | 1.2:+68830463 | MS.gene60550:CDS |
| ATGCTAACTGATGGGCAAGT+TGG | 0.535035 | 1.2:+68836465 | MS.gene60550:CDS |
| GAATGTGTAAATAAGATAAG+TGG | 0.536688 | 1.2:+68830398 | MS.gene60550:CDS |
| GCGGGAATGCATCTACAGTT+GGG | 0.539031 | 1.2:+68831227 | MS.gene60550:CDS |
| TGTGAAGAAGTTCATCGAGT+TGG | 0.544251 | 1.2:+68833362 | MS.gene60550:CDS |
| AACTTTGAGCACGCCTGGGA+GGG | 0.546184 | 1.2:+68831522 | MS.gene60550:CDS |
| AGAGATTTCATTTGAAGATG+GGG | 0.546216 | 1.2:-68835904 | None:intergenic |
| GGAATCATTCAGGTCACTCT+GGG | 0.546727 | 1.2:+68830161 | MS.gene60550:CDS |
| CCTTAACTTTGAGCACGCCT+GGG | 0.547017 | 1.2:+68831518 | MS.gene60550:CDS |
| GAAATCAATAAGGGAGACAA+TGG | 0.549599 | 1.2:+68830472 | MS.gene60550:CDS |
| CTGGGATCAATGCTAACTGA+TGG | 0.549686 | 1.2:+68836456 | MS.gene60550:CDS |
| GGTCATCATCAGTCTGATCT+GGG | 0.554497 | 1.2:-68836579 | None:intergenic |
| TTCTGGAATCGAGGAAGTCG+TGG | 0.555193 | 1.2:+68830063 | MS.gene60550:CDS |
| TTTCTTTCCACTGAAGTGGG+TGG | 0.557146 | 1.2:+68834269 | MS.gene60550:CDS |
| CAGGTCACTCTGGGTCAGGT+GGG | 0.557190 | 1.2:+68830170 | MS.gene60550:CDS |
| AACTGTAGATGCATTCCCGC+TGG | 0.560911 | 1.2:-68831224 | None:intergenic |
| GCTCCAGCATTGTCCTCTAG+AGG | 0.560921 | 1.2:+68835864 | MS.gene60550:CDS |
| AATGAGATTATATATAGAGA+AGG | 0.563945 | 1.2:-68833326 | None:intergenic |
| TGTTATCGATGAATTTCAGC+CGG | 0.567099 | 1.2:+68829405 | MS.gene60550:CDS |
| AAGGTATGAACCATATCTCT+GGG | 0.568167 | 1.2:+68834798 | MS.gene60550:intron |
| TCTGCTATCTGTGATAGTCC+AGG | 0.568587 | 1.2:+68831292 | MS.gene60550:CDS |
| AAAATGTCACTTACCCTCCC+AGG | 0.568735 | 1.2:-68831535 | None:intergenic |
| TCAGTCTGATGAGAACCAAT+CGG | 0.570120 | 1.2:+68833277 | MS.gene60550:CDS |
| TGTCTTCTTTGGCCCTCTAG+AGG | 0.571932 | 1.2:-68835877 | None:intergenic |
| ATGAGCACCACCCACTTCAG+TGG | 0.574773 | 1.2:-68834276 | None:intergenic |
| CGGGATCGTTTGCTTGATCG+TGG | 0.576724 | 1.2:+68829340 | MS.gene60550:CDS |
| CTGGGAGAACCAAGTATCAA+GGG | 0.578029 | 1.2:-68831193 | None:intergenic |
| GTTAACCAGCACGGTTGATG+TGG | 0.588280 | 1.2:+68830679 | MS.gene60550:CDS |
| TTGACCAGACCTTATACAGC+AGG | 0.590278 | 1.2:+68830761 | MS.gene60550:CDS |
| TGATAGTTTATATGTCTCGA+TGG | 0.592465 | 1.2:+68831072 | MS.gene60550:CDS |
| GTTCACCACATCAACCGTGC+TGG | 0.593350 | 1.2:-68830684 | None:intergenic |
| AGAGACTGGATCCTATAGAC+TGG | 0.594900 | 1.2:+68834501 | MS.gene60550:CDS |
| TGGGATCAATGCTAACTGAT+GGG | 0.595228 | 1.2:+68836457 | MS.gene60550:CDS |
| GGATGACAGCTCAAGTCTTG+GGG | 0.597612 | 1.2:+68835983 | MS.gene60550:CDS |
| TTATATGTCTCGATGGAAAG+TGG | 0.599105 | 1.2:+68831079 | MS.gene60550:CDS |
| ATATATAGAGAAGGCATAGA+CGG | 0.599927 | 1.2:-68833317 | None:intergenic |
| CGGGATTCCCAATCCTGAAG+AGG | 0.601860 | 1.2:+68830277 | MS.gene60550:CDS |
| TCTTCTCTTAGAAGAAAGCA+GGG | 0.604861 | 1.2:+68834416 | MS.gene60550:CDS |
| GATCCAGTCTCTGAGAAAGC+CGG | 0.605086 | 1.2:-68834490 | None:intergenic |
| CATATCTCTGGGAGAATGAG+AGG | 0.605460 | 1.2:+68834809 | MS.gene60550:CDS |
| CGAAGGCCTCCCAAAGACTG+AGG | 0.606469 | 1.2:+68830975 | MS.gene60550:CDS |
| GTTTACTGAACAGGGATGGG+AGG | 0.606685 | 1.2:+68833235 | MS.gene60550:intron |
| TAACTTTGAGCACGCCTGGG+AGG | 0.607220 | 1.2:+68831521 | MS.gene60550:CDS |
| CTCCAGCATTGTCCTCTAGA+GGG | 0.608602 | 1.2:+68835865 | MS.gene60550:CDS |
| TCCTGAAGTAAGTCGAATCA+GGG | 0.610907 | 1.2:+68830892 | MS.gene60550:CDS |
| AAGTTTCTTAGAATCTCCGA+AGG | 0.612765 | 1.2:+68830958 | MS.gene60550:CDS |
| AATATCAAACTGACCTGATG+GGG | 0.614646 | 1.2:-68834972 | None:intergenic |
| CACAAAAGAAGAATCGTCAC+CGG | 0.618519 | 1.2:-68830114 | None:intergenic |
| GAAGGCCTCCCAAAGACTGA+GGG | 0.619317 | 1.2:+68830976 | MS.gene60550:CDS |
| CTAGGTTGGAAGCAGGTTTG+GGG | 0.621040 | 1.2:+68836419 | MS.gene60550:intron |
| GATGGGGAGGTATTTAAACC+GGG | 0.621555 | 1.2:-68834956 | None:intergenic |
| ATCAAACTGACCTGATGGGG+AGG | 0.624136 | 1.2:-68834969 | None:intergenic |
| TGGACTTGTTTCTGGAATCG+AGG | 0.625618 | 1.2:+68830054 | MS.gene60550:CDS |
| AGAATGACTTTGTAGAAAAG+GGG | 0.628281 | 1.2:-68830224 | None:intergenic |
| TTCTTGTCAGAGCATCCTTG+AGG | 0.630385 | 1.2:+68830928 | MS.gene60550:CDS |
| GGAATTATCTAGTAACCCAA+AGG | 0.632091 | 1.2:+68834388 | MS.gene60550:CDS |
| TAGATCCCTCAGTCTTTGGG+AGG | 0.634391 | 1.2:-68830981 | None:intergenic |
| GAAATTCACTTTCTTCAGGG+TGG | 0.634719 | 1.2:-68830844 | None:intergenic |
| GAAAGTAAACAAGTTCTACA+GGG | 0.640980 | 1.2:+68830494 | MS.gene60550:CDS |
| TGACAGCTCAAGTCTTGGGG+TGG | 0.641795 | 1.2:+68835986 | MS.gene60550:CDS |
| ATTTAGGGAGTTAACCAGCA+CGG | 0.645100 | 1.2:+68830670 | MS.gene60550:CDS |
| AGAAACTTAACAGATCCTCA+AGG | 0.648118 | 1.2:-68830943 | None:intergenic |
| AGGTAGAATATCTCCAAATG+TGG | 0.648626 | 1.2:-68836520 | None:intergenic |
| CAATCTCAGCCATTAGAGAA+CGG | 0.648660 | 1.2:+68834450 | MS.gene60550:CDS |
| GATGGAAAGTGGTGACAAAG+AGG | 0.649981 | 1.2:+68831090 | MS.gene60550:CDS |
| AGTTCCCGAATCCTACTCCA+AGG | 0.652818 | 1.2:-68830563 | None:intergenic |
| CCAAACAATTGTGAAGCTGG+AGG | 0.661046 | 1.2:-68830254 | None:intergenic |
| ACCAGACCTTATACAGCAGG+CGG | 0.668431 | 1.2:+68830764 | MS.gene60550:CDS |
| ATTCAGAATCTAATACTCTG+AGG | 0.683698 | 1.2:+68834920 | MS.gene60550:CDS |
| TTAGAGCTCAGATCTCGCAG+CGG | 0.695588 | 1.2:+68829314 | MS.gene60550:CDS |
| AAAGTAAACAAGTTCTACAG+GGG | 0.712947 | 1.2:+68830495 | MS.gene60550:CDS |
| ATGGGGAGGTATTTAAACCG+GGG | 0.735896 | 1.2:-68834955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 68829175 | 68836593 | 68829175 | ID=MS.gene60550 |
| chr1.2 | mRNA | 68829175 | 68836593 | 68829175 | ID=MS.gene60550.t1;Parent=MS.gene60550 |
| chr1.2 | exon | 68829175 | 68829432 | 68829175 | ID=MS.gene60550.t1.exon1;Parent=MS.gene60550.t1 |
| chr1.2 | CDS | 68829175 | 68829432 | 68829175 | ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1 |
| chr1.2 | exon | 68830050 | 68831543 | 68830050 | ID=MS.gene60550.t1.exon2;Parent=MS.gene60550.t1 |
| chr1.2 | CDS | 68830050 | 68831543 | 68830050 | ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1 |
| chr1.2 | exon | 68833248 | 68833442 | 68833248 | ID=MS.gene60550.t1.exon3;Parent=MS.gene60550.t1 |
| chr1.2 | CDS | 68833248 | 68833442 | 68833248 | ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1 |
| chr1.2 | exon | 68834248 | 68834528 | 68834248 | ID=MS.gene60550.t1.exon4;Parent=MS.gene60550.t1 |
| chr1.2 | CDS | 68834248 | 68834528 | 68834248 | ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1 |
| chr1.2 | exon | 68834801 | 68834980 | 68834801 | ID=MS.gene60550.t1.exon5;Parent=MS.gene60550.t1 |
| chr1.2 | CDS | 68834801 | 68834980 | 68834801 | ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1 |
| chr1.2 | exon | 68835863 | 68836037 | 68835863 | ID=MS.gene60550.t1.exon6;Parent=MS.gene60550.t1 |
| chr1.2 | CDS | 68835863 | 68836037 | 68835863 | ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1 |
| chr1.2 | exon | 68836423 | 68836593 | 68836423 | ID=MS.gene60550.t1.exon7;Parent=MS.gene60550.t1 |
| chr1.2 | CDS | 68836423 | 68836593 | 68836423 | ID=cds.MS.gene60550.t1;Parent=MS.gene60550.t1 |
| Gene Sequence |
| Protein sequence |
