Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75507.t1 | XP_003601923.1 | 97.9 | 720 | 15 | 0 | 1 | 720 | 1 | 720 | 0.00E+00 | 1375.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75507.t1 | Q54Q92 | 27.6 | 605 | 352 | 15 | 1 | 543 | 4 | 584 | 7.2e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75507.t1 | G7J381 | 97.9 | 720 | 15 | 0 | 1 | 720 | 1 | 720 | 0.0e+00 | 1375.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene75507 | 0.818563 | 1.84E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene75507 | 0.823986 | 1.03E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene75507 | 0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene050084 | MS.gene75507 | 0.823355 | 1.45E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene75507 | 0.827763 | 1.31E-54 | -1.69E-46 |
| MS.gene050213 | MS.gene75507 | 0.857916 | 1.18E-62 | -1.69E-46 |
| MS.gene050257 | MS.gene75507 | 0.839203 | 1.82E-57 | -1.69E-46 |
| MS.gene050258 | MS.gene75507 | 0.83131 | 1.80E-55 | -1.69E-46 |
| MS.gene050348 | MS.gene75507 | 0.803489 | 3.40E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene75507 | 0.820102 | 8.19E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene75507 | 0.83539 | 1.73E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene75507 | 0.819957 | 8.84E-53 | -1.69E-46 |
| MS.gene050931 | MS.gene75507 | 0.809139 | 2.19E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene75507 | 0.816623 | 5.03E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene75507 | 0.80679 | 6.93E-50 | -1.69E-46 |
| MS.gene051209 | MS.gene75507 | 0.812886 | 3.38E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene75507 | 0.822131 | 2.79E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene75507 | 0.80189 | 7.27E-49 | -1.69E-46 |
| MS.gene051381 | MS.gene75507 | 0.812668 | 3.78E-51 | -1.69E-46 |
| MS.gene051819 | MS.gene75507 | 0.806146 | 9.48E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene75507 | 0.809597 | 1.75E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene75507 | 0.838235 | 3.24E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene75507 | 0.854268 | 1.38E-61 | -1.69E-46 |
| MS.gene052776 | MS.gene75507 | 0.806691 | 7.27E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene75507 | 0.806017 | 1.01E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene75507 | 0.852626 | 4.08E-61 | -1.69E-46 |
| MS.gene054004 | MS.gene75507 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene75507 | 0.820697 | 5.98E-53 | -1.69E-46 |
| MS.gene054585 | MS.gene75507 | 0.830995 | 2.15E-55 | -1.69E-46 |
| MS.gene054644 | MS.gene75507 | 0.806284 | 8.86E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene75507 | 0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene75507 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene75507 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene75507 | 0.805287 | 1.44E-49 | -1.69E-46 |
| MS.gene056578 | MS.gene75507 | 0.846229 | 2.48E-59 | -1.69E-46 |
| MS.gene056881 | MS.gene75507 | 0.802008 | 6.88E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene75507 | 0.820895 | 5.39E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene75507 | 0.819782 | 9.69E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene75507 | 0.806605 | 7.58E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene75507 | 0.825966 | 3.51E-54 | -1.69E-46 |
| MS.gene059778 | MS.gene75507 | 0.856596 | 2.89E-62 | -1.69E-46 |
| MS.gene060522 | MS.gene75507 | 0.82714 | 1.84E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene75507 | 0.860327 | 2.23E-63 | -1.69E-46 |
| MS.gene060935 | MS.gene75507 | 0.807313 | 5.37E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene75507 | 0.829932 | 3.90E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene75507 | 0.854647 | 1.07E-61 | -1.69E-46 |
| MS.gene061160 | MS.gene75507 | 0.807649 | 4.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75507.t1 | MTR_3g086840 | 97.917 | 720 | 15 | 0 | 1 | 720 | 1 | 720 | 0.0 | 1460 |
| MS.gene75507.t1 | MTR_8g089925 | 80.028 | 721 | 138 | 4 | 1 | 718 | 1 | 718 | 0.0 | 1206 |
| MS.gene75507.t1 | MTR_8g089925 | 78.173 | 591 | 123 | 4 | 131 | 718 | 1 | 588 | 0.0 | 965 |
| MS.gene75507.t1 | MTR_4g094110 | 64.246 | 716 | 232 | 10 | 1 | 709 | 1 | 699 | 0.0 | 916 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75507.t1 | AT5G65290 | 71.196 | 736 | 190 | 9 | 1 | 720 | 1 | 730 | 0.0 | 1039 |
| MS.gene75507.t1 | AT5G65290 | 78.519 | 540 | 110 | 3 | 1 | 536 | 1 | 538 | 0.0 | 870 |
Find 170 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAACGCCGTCCCTTTATT+TGG | 0.138899 | 3.3:-72414012 | MS.gene75507:CDS |
| TTCTCGTCCCTGCTGATATT+TGG | 0.160912 | 3.3:-72422771 | MS.gene75507:CDS |
| AAACCACAAGGCGGGCAATT+AGG | 0.191717 | 3.3:-72419340 | MS.gene75507:CDS |
| TCAAATATAGTTTCTTTATT+AGG | 0.194715 | 3.3:+72414711 | None:intergenic |
| GTTACTGGTGCATTTCTTCT+TGG | 0.201801 | 3.3:-72420322 | MS.gene75507:CDS |
| ATGGAGGTATTTCTTTCTTT+TGG | 0.213086 | 3.3:-72421898 | MS.gene75507:CDS |
| GGTGCATTTCTTCTTGGTTT+TGG | 0.219379 | 3.3:-72420316 | MS.gene75507:CDS |
| GTTAACTGAGCTGGTTTGTC+TGG | 0.226512 | 3.3:+72414914 | None:intergenic |
| CAAAATTTATCCGCTTATTA+TGG | 0.237697 | 3.3:-72413977 | MS.gene75507:CDS |
| TATTATTTGCAGAATTCTTT+TGG | 0.241151 | 3.3:-72416176 | MS.gene75507:intron |
| ATGACTTGCTCAAATACTTT+TGG | 0.241273 | 3.3:-72420349 | MS.gene75507:CDS |
| TGTCTCTTCATCCATAGTTT+TGG | 0.243444 | 3.3:+72413380 | None:intergenic |
| AACCACAAGGCGGGCAATTA+GGG | 0.255023 | 3.3:-72419339 | MS.gene75507:CDS |
| CATCTTCAAAACCTTGAATA+AGG | 0.267615 | 3.3:+72421279 | None:intergenic |
| TTAAACCTGTCCCCAAATAA+AGG | 0.272474 | 3.3:+72414000 | None:intergenic |
| ACAACGCCGTCCCTTTATTT+GGG | 0.282924 | 3.3:-72414011 | MS.gene75507:CDS |
| AGCAAGTACGCTGCAATTAG+AGG | 0.298768 | 3.3:-72413324 | MS.gene75507:CDS |
| TGAGGAAGTTGTATGATATA+GGG | 0.300928 | 3.3:+72414751 | None:intergenic |
| TCTCGTCCCTGCTGATATTT+GGG | 0.304058 | 3.3:-72422770 | MS.gene75507:CDS |
| CAAAACTGAAGCAGAGGATA+TGG | 0.304694 | 3.3:-72413875 | MS.gene75507:CDS |
| TGCAGCGTACTTGCTGCTTA+TGG | 0.304776 | 3.3:+72413332 | None:intergenic |
| GGGATCCTTATTTAATACTT+TGG | 0.324766 | 3.3:-72418540 | MS.gene75507:CDS |
| AAGCAGGAGTGGGAGCCTTA+TGG | 0.325612 | 3.3:-72420380 | MS.gene75507:intron |
| GGATCCTTATTTAATACTTT+GGG | 0.327645 | 3.3:-72418539 | MS.gene75507:intron |
| TTGAGGAAGTTGTATGATAT+AGG | 0.327982 | 3.3:+72414750 | None:intergenic |
| TACTACTCTTTGTTCAAAAT+CGG | 0.331193 | 3.3:-72414963 | MS.gene75507:CDS |
| CAATAGCATTGGAAAGTTCT+TGG | 0.333733 | 3.3:+72420185 | None:intergenic |
| CATCCAGTTTGACAGCCATT+TGG | 0.337713 | 3.3:+72420215 | None:intergenic |
| TGGAGCACCATCTTCGGGTT+TGG | 0.340533 | 3.3:-72413205 | MS.gene75507:CDS |
| ATCCAGTTTGACAGCCATTT+GGG | 0.348188 | 3.3:+72420216 | None:intergenic |
| ATTACCCAAAGTATTAAATA+AGG | 0.349352 | 3.3:+72418535 | None:intergenic |
| TTCAGCTGGAGCACCATCTT+CGG | 0.350183 | 3.3:-72413211 | MS.gene75507:CDS |
| CGGAGGTATATCCAAAACTA+TGG | 0.350526 | 3.3:-72413391 | MS.gene75507:CDS |
| TGCCCAAATGGCTGTCAAAC+TGG | 0.351462 | 3.3:-72420218 | MS.gene75507:CDS |
| AGCACCATTCCCGTTGTTAG+AGG | 0.360366 | 3.3:+72422886 | None:intergenic |
| CTTGAACAAGGGCGCAAAAT+CGG | 0.364439 | 3.3:-72413676 | MS.gene75507:CDS |
| TATGGTTACATACACCGTTT+TGG | 0.368794 | 3.3:-72413959 | MS.gene75507:CDS |
| TTGAACAAGGGCGCAAAATC+GGG | 0.378695 | 3.3:-72413675 | MS.gene75507:CDS |
| GCAATTAGGGGAAAATGATA+TGG | 0.380335 | 3.3:-72419326 | MS.gene75507:CDS |
| TCAGCTGGAGCACCATCTTC+GGG | 0.382820 | 3.3:-72413210 | MS.gene75507:CDS |
| AGCAGGGACGAGAATGATAA+TGG | 0.384683 | 3.3:+72422780 | None:intergenic |
| ATCTTCAAAACCTTGAATAA+GGG | 0.385541 | 3.3:+72421280 | None:intergenic |
| GTGAAATTCCTAAAAGCATC+TGG | 0.388838 | 3.3:-72420288 | MS.gene75507:CDS |
| TATGAACGCCGCAAGTCAAC+TGG | 0.391408 | 3.3:-72418734 | MS.gene75507:CDS |
| TTCCCACAAAATTGCCCAAA+TGG | 0.393163 | 3.3:-72420230 | MS.gene75507:CDS |
| AGCAGAGGATATGGATGGTT+TGG | 0.400479 | 3.3:-72413866 | MS.gene75507:CDS |
| ACATCTGCTTGGAAGTTGCT+TGG | 0.405047 | 3.3:+72419540 | None:intergenic |
| CAACGGACTTGATATTGAAT+CGG | 0.409675 | 3.3:-72413620 | MS.gene75507:CDS |
| AGCAGGAGTGGGAGCCTTAT+GGG | 0.410727 | 3.3:-72420379 | MS.gene75507:intron |
| GCTGTGGCACCCCTTATTCA+AGG | 0.413324 | 3.3:-72421290 | MS.gene75507:CDS |
| CCTGTTCGGACTGGCAAGTT+GGG | 0.417625 | 3.3:-72418560 | MS.gene75507:CDS |
| TCGTCAATAACATTCATATA+AGG | 0.419796 | 3.3:+72419497 | None:intergenic |
| CATCTGCTTGGAAGTTGCTT+GGG | 0.419895 | 3.3:+72419541 | None:intergenic |
| TATCTAATTGTGGGATCCAT+TGG | 0.421566 | 3.3:-72421197 | MS.gene75507:CDS |
| TGACGATATGCTTACTCAAA+TGG | 0.422170 | 3.3:-72419480 | MS.gene75507:intron |
| TTCATCAAGCGCAGAATAAG+AGG | 0.422203 | 3.3:+72413254 | None:intergenic |
| CTTGGTCTTCTATCTAATTG+TGG | 0.424052 | 3.3:-72421207 | MS.gene75507:CDS |
| TATCTATGATTGCAGCGAAT+GGG | 0.425215 | 3.3:-72414042 | MS.gene75507:intron |
| CTAAACTAAGGCGTCATCTT+CGG | 0.426988 | 3.3:-72419276 | MS.gene75507:CDS |
| CCTCGTCATTGTAAGTAACT+TGG | 0.428128 | 3.3:+72413016 | None:intergenic |
| TTCTTCTTCAGTAATTAAAT+CGG | 0.439054 | 3.3:+72413416 | None:intergenic |
| CAGAGTTTCAAGTCCAACAT+AGG | 0.440272 | 3.3:-72413150 | MS.gene75507:CDS |
| CCGCCTTGTGGTTTGAATGA+AGG | 0.440418 | 3.3:+72419349 | None:intergenic |
| CCCAACTTGCCAGTCCGAAC+AGG | 0.446107 | 3.3:+72418560 | None:intergenic |
| AGCACGTATCTAGGAACATC+TGG | 0.446451 | 3.3:+72422838 | None:intergenic |
| CCGTCCCTTTATTTGGGGAC+AGG | 0.447195 | 3.3:-72414005 | MS.gene75507:CDS |
| GATGAAGAGACAAGGAGATA+TGG | 0.447213 | 3.3:-72413369 | MS.gene75507:CDS |
| ATCTCGCTTCCTCTAACAAC+GGG | 0.449941 | 3.3:-72422895 | MS.gene75507:CDS |
| AACGGACTTGATATTGAATC+GGG | 0.450684 | 3.3:-72413619 | MS.gene75507:CDS |
| TTGGTCTTCTATCTAATTGT+GGG | 0.454361 | 3.3:-72421206 | MS.gene75507:CDS |
| TTAAGGAAACAAGTTGAGAA+AGG | 0.458142 | 3.3:-72416144 | MS.gene75507:CDS |
| TTCTTCTCATTATGATGCAC+AGG | 0.460422 | 3.3:-72421160 | MS.gene75507:CDS |
| TCTTATTCTGCGCTTGATGA+AGG | 0.462589 | 3.3:-72413252 | MS.gene75507:CDS |
| TTATCGTATCTTCCAACTCA+AGG | 0.467532 | 3.3:+72418762 | None:intergenic |
| CAGATGCACATGTACATTAG+TGG | 0.471011 | 3.3:+72414990 | None:intergenic |
| CATAAGTAAGTTAACTGAGC+TGG | 0.472174 | 3.3:+72414905 | None:intergenic |
| TAAAGAAACTATATTTGAAA+AGG | 0.474544 | 3.3:-72414706 | MS.gene75507:intron |
| TAAGTAACTTGGTTCAAAGA+TGG | 0.475479 | 3.3:+72413027 | None:intergenic |
| GACTAGTGTGCATGTTAACT+TGG | 0.477495 | 3.3:-72421225 | MS.gene75507:CDS |
| TTGTTAGAGGAAGCGAGATC+AGG | 0.477817 | 3.3:+72422899 | None:intergenic |
| TGAGTATATAACTTATGTAC+TGG | 0.479540 | 3.3:-72418789 | MS.gene75507:CDS |
| TAAACCTGTCCCCAAATAAA+GGG | 0.479597 | 3.3:+72414001 | None:intergenic |
| AGAGTTTCAAGTCCAACATA+GGG | 0.488494 | 3.3:-72413149 | MS.gene75507:CDS |
| ATCCCGCTTGGACATCTGCT+TGG | 0.488961 | 3.3:+72419529 | None:intergenic |
| GCGCAAAATCGGGGAAGAGC+AGG | 0.491919 | 3.3:-72413665 | MS.gene75507:CDS |
| GAGGAAGTTGTATGATATAG+GGG | 0.492511 | 3.3:+72414752 | None:intergenic |
| CAACGCCGTCCCTTTATTTG+GGG | 0.494059 | 3.3:-72414010 | MS.gene75507:CDS |
| TTAATTACTGAAGAAGAAAA+CGG | 0.496066 | 3.3:-72413411 | MS.gene75507:CDS |
| GCATCTGGAGAAATGCTGAT+TGG | 0.499524 | 3.3:-72420273 | MS.gene75507:CDS |
| TCCCCTAATTGCCCGCCTTG+TGG | 0.501900 | 3.3:+72419337 | None:intergenic |
| ACCTGTTCGGACTGGCAAGT+TGG | 0.503123 | 3.3:-72418561 | MS.gene75507:CDS |
| ATCACTTACAACAATAGCAT+TGG | 0.505667 | 3.3:+72420174 | None:intergenic |
| GTACGCTGCAATTAGAGGGC+AGG | 0.507649 | 3.3:-72413319 | MS.gene75507:CDS |
| TCATTATGATGCACAGGACC+TGG | 0.509715 | 3.3:-72421154 | MS.gene75507:intron |
| TTAACTGAGCTGGTTTGTCT+GGG | 0.512639 | 3.3:+72414915 | None:intergenic |
| ACGGCAAACACAGGAAAATA+CGG | 0.512908 | 3.3:-72413106 | MS.gene75507:CDS |
| TGTAAAATAATTAGTCCGGA+TGG | 0.513683 | 3.3:+72413841 | None:intergenic |
| TATAAAATCCGTTCGAACAC+AGG | 0.517451 | 3.3:-72416028 | MS.gene75507:CDS |
| AGGAGTATTATAGATACAAA+AGG | 0.519923 | 3.3:-72419243 | MS.gene75507:intron |
| AAGTCATGGCAAATCCCATA+AGG | 0.521001 | 3.3:+72420365 | None:intergenic |
| ACGGTGAAAAGCACGTATCT+AGG | 0.525843 | 3.3:+72422829 | None:intergenic |
| CTTCGGGTTTGGCTTCGACA+TGG | 0.526937 | 3.3:-72413194 | MS.gene75507:CDS |
| ATAGCTTCTCACAATGAGAA+TGG | 0.527440 | 3.3:-72421917 | MS.gene75507:CDS |
| TTCACGTTGAGGTACTTCGC+TGG | 0.527462 | 3.3:-72422862 | MS.gene75507:CDS |
| GATCTCGCTTCCTCTAACAA+CGG | 0.537993 | 3.3:-72422896 | MS.gene75507:CDS |
| GACCGAGGCGAATGAGATTG+AGG | 0.539105 | 3.3:+72414733 | None:intergenic |
| AGTAATTCTAGAAATTCAGC+TGG | 0.539123 | 3.3:-72413225 | MS.gene75507:CDS |
| AGAAGTCAATGGCTAAACTA+AGG | 0.542357 | 3.3:-72419288 | MS.gene75507:CDS |
| TATCGTATCTTCCAACTCAA+GGG | 0.546729 | 3.3:+72418763 | None:intergenic |
| ATGGATGGTTTGGATCCATC+CGG | 0.547244 | 3.3:-72413856 | MS.gene75507:CDS |
| ATTCAAGCATCAGACCTGTT+CGG | 0.547965 | 3.3:-72418574 | MS.gene75507:CDS |
| TTCCTCAATCTCATTCGCCT+CGG | 0.548073 | 3.3:-72414735 | MS.gene75507:CDS |
| TGTACTGGAAGCCCTTGAGT+TGG | 0.550473 | 3.3:-72418774 | MS.gene75507:CDS |
| AACACAGGAGCTACTTGTGC+AGG | 0.550794 | 3.3:-72416013 | MS.gene75507:intron |
| AGCATCAGACCTGTTCGGAC+TGG | 0.552727 | 3.3:-72418569 | MS.gene75507:CDS |
| GAGCGGTCTTGGCTTGAACA+AGG | 0.552878 | 3.3:-72413688 | MS.gene75507:CDS |
| GTCGAAGCCAAACCCGAAGA+TGG | 0.553952 | 3.3:+72413198 | None:intergenic |
| AGTACCGCCCAAATATCAGC+AGG | 0.559037 | 3.3:+72422763 | None:intergenic |
| TACGCTGCAATTAGAGGGCA+GGG | 0.559127 | 3.3:-72413318 | MS.gene75507:CDS |
| CCGTTGAAATTCCTAGCAAG+TGG | 0.563702 | 3.3:+72413637 | None:intergenic |
| CAGGAAAATACGGTCTCTCG+TGG | 0.565236 | 3.3:-72413096 | MS.gene75507:CDS |
| GAAGTTGCTTGCAACCAAAA+CGG | 0.565444 | 3.3:+72413945 | None:intergenic |
| ATCTATGATTGCAGCGAATG+GGG | 0.568014 | 3.3:-72414041 | MS.gene75507:intron |
| GCAAGTACGCTGCAATTAGA+GGG | 0.570104 | 3.3:-72413323 | MS.gene75507:CDS |
| CTTCATTCAAACCACAAGGC+GGG | 0.573322 | 3.3:-72419348 | MS.gene75507:CDS |
| TGACACAGATGAGAAGTCAA+TGG | 0.574831 | 3.3:-72419299 | MS.gene75507:CDS |
| AGCAGGTTGTTCCACTTGCT+AGG | 0.574893 | 3.3:-72413648 | MS.gene75507:CDS |
| TCTTCAAAACCTTGAATAAG+GGG | 0.580909 | 3.3:+72421281 | None:intergenic |
| AAGTAGCTCCTGTGTTCGAA+CGG | 0.584062 | 3.3:+72416020 | None:intergenic |
| AATAATTCCGAAAAGACCAA+TGG | 0.585598 | 3.3:+72421181 | None:intergenic |
| TTCCAAGCAGATGTCCAAGC+GGG | 0.587731 | 3.3:-72419531 | MS.gene75507:CDS |
| GTGGGAAAGAACTTTCTGGC+GGG | 0.588522 | 3.3:+72420246 | None:intergenic |
| GTATTTCTTCAGGAGAGGAA+CGG | 0.591443 | 3.3:-72413459 | MS.gene75507:intron |
| ACATGGCAAACAATGAAGAC+AGG | 0.594497 | 3.3:-72413177 | MS.gene75507:CDS |
| CCACTTGCTAGGAATTTCAA+CGG | 0.597233 | 3.3:-72413637 | MS.gene75507:CDS |
| AAAAGTATTTGAGCAAGTCA+TGG | 0.600122 | 3.3:+72420351 | None:intergenic |
| AGCGGTCTTGGCTTGAACAA+GGG | 0.602451 | 3.3:-72413687 | MS.gene75507:CDS |
| AGGTCTCAAAGGATCCCGCT+TGG | 0.604904 | 3.3:+72419517 | None:intergenic |
| TTTACCCCTACGGCAAACAC+AGG | 0.604921 | 3.3:-72413115 | MS.gene75507:CDS |
| CGTCCCTGCTGATATTTGGG+CGG | 0.611244 | 3.3:-72422767 | MS.gene75507:intron |
| TCATCTTCGGAATGCTCGTG+AGG | 0.613725 | 3.3:-72419263 | MS.gene75507:CDS |
| TAGTTTCTTTATTAGGACCG+AGG | 0.614327 | 3.3:+72414718 | None:intergenic |
| ACATTCATATAAGGTCTCAA+AGG | 0.619065 | 3.3:+72419506 | None:intergenic |
| CCAAGTTACTTACAATGACG+AGG | 0.620005 | 3.3:-72413016 | MS.gene75507:CDS |
| GCTTCCTCTAACAACGGGAA+TGG | 0.622110 | 3.3:-72422890 | MS.gene75507:CDS |
| CTGCAATTAGAGGGCAGGGT+GGG | 0.622483 | 3.3:-72413314 | MS.gene75507:CDS |
| AAAAGCGATAGATCAATGCT+AGG | 0.623744 | 3.3:+72416060 | None:intergenic |
| CAAACCATCCAGTTGACTTG+CGG | 0.625928 | 3.3:+72418726 | None:intergenic |
| TGAACAAGGGCGCAAAATCG+GGG | 0.626860 | 3.3:-72413674 | MS.gene75507:CDS |
| ACCACAAGGCGGGCAATTAG+GGG | 0.627913 | 3.3:-72419338 | MS.gene75507:CDS |
| AGGAAGTTGTATGATATAGG+GGG | 0.634202 | 3.3:+72414753 | None:intergenic |
| ACTGAAGCAGAGGATATGGA+TGG | 0.638835 | 3.3:-72413871 | MS.gene75507:CDS |
| CCTGTCCCCAAATAAAGGGA+CGG | 0.643271 | 3.3:+72414005 | None:intergenic |
| GTGTATGTAACCATAATAAG+CGG | 0.646657 | 3.3:+72413967 | None:intergenic |
| CTCATCAAGTGACTCAGACG+AGG | 0.649535 | 3.3:+72413071 | None:intergenic |
| GAGTTTCAAGTCCAACATAG+GGG | 0.653222 | 3.3:-72413148 | MS.gene75507:CDS |
| GCTTCTCACAATGAGAATGG+AGG | 0.663834 | 3.3:-72421914 | MS.gene75507:CDS |
| GAAACAAGTTGAGAAAGGCA+TGG | 0.668398 | 3.3:-72416139 | MS.gene75507:CDS |
| AACGCCGCAAGTCAACTGGA+TGG | 0.668525 | 3.3:-72418730 | MS.gene75507:intron |
| TGTGGGAAAGAACTTTCTGG+CGG | 0.668683 | 3.3:+72420245 | None:intergenic |
| GATCCTTCATTCAAACCACA+AGG | 0.673960 | 3.3:-72419352 | MS.gene75507:CDS |
| AAACTATGGATGAAGAGACA+AGG | 0.676921 | 3.3:-72413377 | MS.gene75507:CDS |
| TGAATCGGGTAACAACTATG+TGG | 0.678863 | 3.3:-72413605 | MS.gene75507:intron |
| AGGAAAATACGGTCTCTCGT+GGG | 0.680794 | 3.3:-72413095 | MS.gene75507:CDS |
| ACAGAACCAAGTATATCCAA+CGG | 0.692277 | 3.3:+72422810 | None:intergenic |
| CTTCCAAGCAGATGTCCAAG+CGG | 0.707280 | 3.3:-72419532 | MS.gene75507:CDS |
| ATTACTGAAGAAGAAAACGG+AGG | 0.707582 | 3.3:-72413408 | MS.gene75507:CDS |
| CCTTCATTCAAACCACAAGG+CGG | 0.708725 | 3.3:-72419349 | MS.gene75507:CDS |
| GCTGCAATTAGAGGGCAGGG+TGG | 0.716544 | 3.3:-72413315 | MS.gene75507:CDS |
| GTACCGCCCAAATATCAGCA+GGG | 0.734973 | 3.3:+72422764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 72413011 | 72422935 | 72413011 | ID=MS.gene75507 |
| chr3.3 | mRNA | 72413011 | 72422935 | 72413011 | ID=MS.gene75507.t1;Parent=MS.gene75507 |
| chr3.3 | exon | 72422768 | 72422935 | 72422768 | ID=MS.gene75507.t1.exon1;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72422768 | 72422935 | 72422768 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72421863 | 72421942 | 72421863 | ID=MS.gene75507.t1.exon2;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72421863 | 72421942 | 72421863 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72421155 | 72421313 | 72421155 | ID=MS.gene75507.t1.exon3;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72421155 | 72421313 | 72421155 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72420183 | 72420396 | 72420183 | ID=MS.gene75507.t1.exon4;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72420183 | 72420396 | 72420183 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72419481 | 72419567 | 72419481 | ID=MS.gene75507.t1.exon5;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72419481 | 72419567 | 72419481 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72419244 | 72419383 | 72419244 | ID=MS.gene75507.t1.exon6;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72419244 | 72419383 | 72419244 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72418731 | 72418811 | 72418731 | ID=MS.gene75507.t1.exon7;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72418731 | 72418811 | 72418731 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72418540 | 72418604 | 72418540 | ID=MS.gene75507.t1.exon8;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72418540 | 72418604 | 72418540 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72416014 | 72416186 | 72416014 | ID=MS.gene75507.t1.exon9;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72416014 | 72416186 | 72416014 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72414897 | 72415027 | 72414897 | ID=MS.gene75507.t1.exon10;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72414897 | 72415027 | 72414897 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72414707 | 72414794 | 72414707 | ID=MS.gene75507.t1.exon11;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72414707 | 72414794 | 72414707 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72413836 | 72414049 | 72413836 | ID=MS.gene75507.t1.exon12;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72413836 | 72414049 | 72413836 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72413606 | 72413709 | 72413606 | ID=MS.gene75507.t1.exon13;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72413606 | 72413709 | 72413606 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| chr3.3 | exon | 72413011 | 72413469 | 72413011 | ID=MS.gene75507.t1.exon14;Parent=MS.gene75507.t1 |
| chr3.3 | CDS | 72413011 | 72413469 | 72413011 | ID=cds.MS.gene75507.t1;Parent=MS.gene75507.t1 |
| Gene Sequence |
| Protein sequence |
