Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054781.t1 | XP_024640437.1 | 99.3 | 443 | 3 | 0 | 1 | 443 | 1 | 443 | 3.60E-248 | 867.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054781.t1 | Q8LJW3 | 74.7 | 454 | 101 | 5 | 1 | 443 | 1 | 451 | 2.2e-185 | 649.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054781.t1 | G7JY63 | 99.3 | 443 | 3 | 0 | 1 | 443 | 9 | 451 | 2.6e-248 | 867.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054781 | MS.gene001931 | PPI |
| MS.gene054781 | MS.gene88063 | PPI |
| MS.gene054781 | MS.gene86660 | PPI |
| MS.gene054781 | MS.gene99846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054781.t1 | MTR_5g047260 | 99.323 | 443 | 3 | 0 | 1 | 443 | 9 | 451 | 0.0 | 911 |
| MS.gene054781.t1 | MTR_5g047260 | 95.184 | 353 | 16 | 1 | 1 | 353 | 9 | 360 | 0.0 | 693 |
| MS.gene054781.t1 | MTR_5g047260 | 98.671 | 301 | 4 | 0 | 1 | 301 | 9 | 309 | 0.0 | 619 |
| MS.gene054781.t1 | MTR_7g028050 | 59.729 | 442 | 171 | 4 | 9 | 443 | 1 | 442 | 0.0 | 541 |
| MS.gene054781.t1 | MTR_7g022470 | 58.093 | 451 | 176 | 6 | 3 | 443 | 4 | 451 | 1.20e-176 | 502 |
| MS.gene054781.t1 | MTR_3g088885 | 54.940 | 415 | 174 | 5 | 8 | 410 | 8 | 421 | 1.74e-153 | 443 |
| MS.gene054781.t1 | MTR_4g101950 | 52.489 | 442 | 193 | 4 | 11 | 443 | 8 | 441 | 5.93e-153 | 441 |
| MS.gene054781.t1 | MTR_5g011580 | 51.131 | 442 | 199 | 4 | 11 | 443 | 8 | 441 | 8.56e-147 | 426 |
| MS.gene054781.t1 | MTR_1g029520 | 52.347 | 426 | 182 | 7 | 25 | 429 | 254 | 679 | 3.10e-141 | 420 |
| MS.gene054781.t1 | MTR_7g028050 | 57.440 | 336 | 137 | 3 | 114 | 443 | 4 | 339 | 6.03e-136 | 394 |
| MS.gene054781.t1 | MTR_5g015170 | 46.318 | 421 | 199 | 7 | 9 | 403 | 9 | 428 | 6.59e-120 | 358 |
| MS.gene054781.t1 | MTR_4g097380 | 43.287 | 432 | 215 | 8 | 3 | 410 | 23 | 448 | 4.55e-113 | 341 |
| MS.gene054781.t1 | MTR_1g012740 | 37.607 | 117 | 66 | 2 | 249 | 364 | 34 | 144 | 5.12e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054781.t1 | AT1G69040 | 74.670 | 454 | 101 | 5 | 1 | 443 | 5 | 455 | 0.0 | 679 |
| MS.gene054781.t1 | AT1G69040 | 74.670 | 454 | 101 | 5 | 1 | 443 | 1 | 451 | 0.0 | 679 |
| MS.gene054781.t1 | AT2G03730 | 69.536 | 453 | 121 | 7 | 4 | 441 | 6 | 456 | 0.0 | 617 |
| MS.gene054781.t1 | AT2G03730 | 69.536 | 453 | 121 | 7 | 4 | 441 | 6 | 456 | 0.0 | 617 |
| MS.gene054781.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 17 | 407 | 0.0 | 513 |
| MS.gene054781.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 17 | 407 | 0.0 | 513 |
| MS.gene054781.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 17 | 407 | 0.0 | 513 |
| MS.gene054781.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 3 | 393 | 0.0 | 512 |
| MS.gene054781.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 3 | 393 | 0.0 | 512 |
| MS.gene054781.t1 | AT3G01990 | 64.885 | 393 | 134 | 3 | 10 | 400 | 3 | 393 | 0.0 | 512 |
| MS.gene054781.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 9.87e-157 | 451 |
| MS.gene054781.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 9.87e-157 | 451 |
| MS.gene054781.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 9.87e-157 | 451 |
| MS.gene054781.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 9.87e-157 | 451 |
| MS.gene054781.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 9.87e-157 | 451 |
| MS.gene054781.t1 | AT3G01990 | 65.231 | 325 | 109 | 3 | 10 | 332 | 17 | 339 | 7.16e-149 | 427 |
| MS.gene054781.t1 | AT3G01990 | 64.242 | 330 | 114 | 3 | 10 | 337 | 17 | 344 | 7.52e-149 | 427 |
| MS.gene054781.t1 | AT3G01990 | 64.242 | 330 | 114 | 3 | 10 | 337 | 3 | 330 | 1.35e-148 | 426 |
| MS.gene054781.t1 | AT1G12420 | 52.036 | 442 | 195 | 7 | 11 | 443 | 8 | 441 | 2.43e-145 | 422 |
| MS.gene054781.t1 | AT4G22780 | 48.894 | 452 | 200 | 8 | 11 | 442 | 8 | 448 | 1.19e-134 | 395 |
| MS.gene054781.t1 | AT4G22780 | 30.233 | 172 | 100 | 3 | 5 | 171 | 214 | 370 | 9.69e-13 | 70.1 |
| MS.gene054781.t1 | AT4G22780 | 48.894 | 452 | 200 | 8 | 11 | 442 | 8 | 448 | 1.19e-134 | 395 |
| MS.gene054781.t1 | AT4G22780 | 30.233 | 172 | 100 | 3 | 5 | 171 | 214 | 370 | 9.69e-13 | 70.1 |
| MS.gene054781.t1 | AT3G01990 | 64.828 | 290 | 98 | 3 | 10 | 297 | 17 | 304 | 1.22e-127 | 372 |
| MS.gene054781.t1 | AT3G01990 | 64.828 | 290 | 98 | 3 | 10 | 297 | 3 | 290 | 2.33e-127 | 371 |
| MS.gene054781.t1 | AT5G25320 | 43.791 | 459 | 214 | 8 | 8 | 422 | 8 | 466 | 2.99e-127 | 378 |
| MS.gene054781.t1 | AT5G25320 | 43.794 | 427 | 198 | 6 | 38 | 422 | 1 | 427 | 3.64e-120 | 358 |
| MS.gene054781.t1 | AT5G65890 | 40.381 | 473 | 217 | 9 | 1 | 423 | 2 | 459 | 8.88e-111 | 335 |
| MS.gene054781.t1 | AT5G65890 | 40.381 | 473 | 217 | 9 | 1 | 423 | 2 | 459 | 8.88e-111 | 335 |
| MS.gene054781.t1 | AT1G12420 | 48.806 | 377 | 176 | 7 | 76 | 443 | 1 | 369 | 3.05e-110 | 330 |
| MS.gene054781.t1 | AT5G25320 | 42.896 | 366 | 168 | 7 | 8 | 332 | 8 | 373 | 1.01e-96 | 295 |
| MS.gene054781.t1 | AT5G65890 | 39.336 | 422 | 191 | 9 | 52 | 423 | 1 | 407 | 1.83e-92 | 286 |
| MS.gene054781.t1 | AT5G65890 | 39.336 | 422 | 191 | 9 | 52 | 423 | 1 | 407 | 1.83e-92 | 286 |
| MS.gene054781.t1 | AT5G65890 | 39.466 | 337 | 161 | 7 | 122 | 423 | 17 | 345 | 2.51e-71 | 229 |
Find 84 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAAATGCCACTGTTATA+AGG | 0.177173 | 5.3:-34568243 | MS.gene054781:CDS |
| GGTAACAGATGAAGTCATTT+TGG | 0.193644 | 5.3:-34567876 | MS.gene054781:CDS |
| TTCTATGTTCGCGGAGCTTC+TGG | 0.235707 | 5.3:-34566153 | MS.gene054781:CDS |
| CTGTTACCTTGTTTCCATCT+TGG | 0.252705 | 5.3:+34567891 | None:intergenic |
| TTCAGGGTTGTGATTGATAA+TGG | 0.272653 | 5.3:-34568271 | MS.gene054781:intron |
| CCACACAGCAATAGAGCTTA+TGG | 0.298609 | 5.3:-34567674 | MS.gene054781:CDS |
| TTCTGATGGTGGATGGTTCA+TGG | 0.305458 | 5.3:-34568035 | MS.gene054781:CDS |
| CGTTCACTATGTTGCATTTG+AGG | 0.335990 | 5.3:+34567602 | None:intergenic |
| GTTACCAATTGTTTGCCTAA+TGG | 0.351693 | 5.3:+34566101 | None:intergenic |
| GAATCTTGAGGTACAGATTC+AGG | 0.353056 | 5.3:+34566054 | None:intergenic |
| ATCAGATGATGTTTGATGAT+AGG | 0.358215 | 5.3:-34567381 | MS.gene054781:CDS |
| CGAGGGGCCACAAGCATATC+AGG | 0.358239 | 5.3:-34567170 | MS.gene054781:intron |
| TATTACATCAAGCATATAGA+TGG | 0.358620 | 5.3:-34567003 | MS.gene054781:CDS |
| GTAGTTGGAAAGCAGGATTC+AGG | 0.372324 | 5.3:+34567730 | None:intergenic |
| CTCACTTCTGAAAGCAATCC+TGG | 0.377119 | 5.3:+34567640 | None:intergenic |
| TCAAAATGCCACTGTTATAA+GGG | 0.390728 | 5.3:-34568242 | MS.gene054781:intron |
| TACGTGTTACGTTCGATAAT+AGG | 0.395501 | 5.3:+34566247 | None:intergenic |
| CTGTTGTTACTATTGAATGT+AGG | 0.402093 | 5.3:-34567273 | MS.gene054781:CDS |
| TCAGATGATGTTTGATGATA+GGG | 0.410378 | 5.3:-34567380 | MS.gene054781:CDS |
| ACATAGTGAACGCGGAGGTT+TGG | 0.418101 | 5.3:-34567591 | MS.gene054781:CDS |
| CTAAGACAATTGAATCCATT+AGG | 0.420076 | 5.3:-34566116 | MS.gene054781:CDS |
| TATTTATGGATTTAGTCTCT+TGG | 0.422919 | 5.3:-34567754 | MS.gene054781:intron |
| TGTTGTTACTATTGAATGTA+GGG | 0.432062 | 5.3:-34567272 | MS.gene054781:CDS |
| ATGTGCTTGGTGGTGGAAAC+AGG | 0.437113 | 5.3:-34567462 | MS.gene054781:CDS |
| GAATCCATTAGGCAAACAAT+TGG | 0.439461 | 5.3:-34566105 | MS.gene054781:CDS |
| ACAAGATCATCAATCTTTAG+TGG | 0.446305 | 5.3:-34566027 | MS.gene054781:CDS |
| CTGTGTAATGTGCTTGGTGG+TGG | 0.460185 | 5.3:-34567469 | MS.gene054781:CDS |
| AACACAATACTCAAAGTAAA+GGG | 0.460429 | 5.3:-34566081 | MS.gene054781:CDS |
| ACATTTCTTCTGATGGTGGA+TGG | 0.466352 | 5.3:-34568042 | MS.gene054781:CDS |
| CTAAAGATTGATGATCTTGT+CGG | 0.470921 | 5.3:+34566030 | None:intergenic |
| CCAACAGATCTCATAGTAGT+TGG | 0.479948 | 5.3:+34567715 | None:intergenic |
| CATGTGACCGACGAGGAAAC+AGG | 0.483221 | 5.3:-34567538 | MS.gene054781:CDS |
| TGATGAGATTTAGATCAGTA+AGG | 0.486493 | 5.3:+34568077 | None:intergenic |
| CTATTCTCAGTCTCATTACA+TGG | 0.487826 | 5.3:-34568417 | MS.gene054781:CDS |
| ATTCGACGCATACTGATAGA+AGG | 0.487974 | 5.3:-34567408 | MS.gene054781:CDS |
| TAACACAATACTCAAAGTAA+AGG | 0.491332 | 5.3:-34566082 | MS.gene054781:CDS |
| TCTAAATCTCATCATAACTA+AGG | 0.492141 | 5.3:-34568068 | MS.gene054781:CDS |
| TTTGACAGATATGCAATATG+TGG | 0.492908 | 5.3:-34567215 | MS.gene054781:CDS |
| ACAGTGTCGAAAACAAGCTT+TGG | 0.494289 | 5.3:+34567244 | None:intergenic |
| GTTAACACTTTCTATGTTCG+CGG | 0.497796 | 5.3:-34566162 | MS.gene054781:CDS |
| TAGAGCTTATGGGAAGTGAT+AGG | 0.500002 | 5.3:-34567663 | MS.gene054781:CDS |
| AGAATAGCCTCACAGTTACA+AGG | 0.500098 | 5.3:-34566215 | MS.gene054781:CDS |
| CAGTTCACAACATCAACATT+TGG | 0.501696 | 5.3:+34567313 | None:intergenic |
| TCTCATAGTAGTTGGAAAGC+AGG | 0.503054 | 5.3:+34567723 | None:intergenic |
| AAGGCTTACATTTCTTCTGA+TGG | 0.503999 | 5.3:-34568049 | MS.gene054781:CDS |
| TGTTGTGAACTGGTCTGATA+AGG | 0.506598 | 5.3:-34567302 | MS.gene054781:CDS |
| CACACAGCAATAGAGCTTAT+GGG | 0.511438 | 5.3:-34567673 | MS.gene054781:CDS |
| TTTAATGTAACTGACCAAGA+TGG | 0.522792 | 5.3:-34567905 | MS.gene054781:CDS |
| GAGCTTCTGTGTAATGTGCT+TGG | 0.535698 | 5.3:-34567475 | MS.gene054781:CDS |
| CGATAATAGGCCAACTCTGT+CGG | 0.536108 | 5.3:+34566260 | None:intergenic |
| ACAGAGGCTTTCGCTAATCA+AGG | 0.537275 | 5.3:-34567497 | MS.gene054781:CDS |
| GCTTACATTTCTTCTGATGG+TGG | 0.539478 | 5.3:-34568046 | MS.gene054781:CDS |
| TTACTATTGAATGTAGGGAT+AGG | 0.544712 | 5.3:-34567267 | MS.gene054781:CDS |
| CAAATGTTGATGTTGTGAAC+TGG | 0.551926 | 5.3:-34567312 | MS.gene054781:CDS |
| AGCAGAACCTGTTTCCTCGT+CGG | 0.554657 | 5.3:+34567531 | None:intergenic |
| CTCTGCACCACCGACAGAGT+TGG | 0.561892 | 5.3:-34566270 | MS.gene054781:CDS |
| CTGATATGCTTGTGGCCCCT+CGG | 0.564762 | 5.3:+34567171 | None:intergenic |
| CTTCTGTGTAATGTGCTTGG+TGG | 0.570795 | 5.3:-34567472 | MS.gene054781:CDS |
| GGTGGTGGAAACAGGAAAAG+AGG | 0.576386 | 5.3:-34567454 | MS.gene054781:CDS |
| CCAACTACTATGAGATCTGT+TGG | 0.577524 | 5.3:-34567715 | MS.gene054781:CDS |
| TTAGAAGAATGAACCCTCCA+AGG | 0.580242 | 5.3:-34568373 | MS.gene054781:intron |
| CATGCTAATATTGATGCCGA+GGG | 0.584102 | 5.3:-34567187 | MS.gene054781:CDS |
| TGTTGGTGTTAAACAAACAC+TGG | 0.585143 | 5.3:-34567698 | MS.gene054781:CDS |
| ATTACATCAAGCATATAGAT+GGG | 0.598451 | 5.3:-34567002 | MS.gene054781:CDS |
| TCATGCTAATATTGATGCCG+AGG | 0.598549 | 5.3:-34567188 | MS.gene054781:CDS |
| TATTGAGAGAAGAGTTTCTG+AGG | 0.605394 | 5.3:-34566923 | MS.gene054781:intron |
| CTTATGGGAAGTGATAGGCC+AGG | 0.625341 | 5.3:-34567658 | MS.gene054781:CDS |
| GCAGAAGTAACAACGAAAGG+AGG | 0.625698 | 5.3:-34566192 | MS.gene054781:CDS |
| AGGGCAGAAGTAACAACGAA+AGG | 0.626664 | 5.3:-34566195 | MS.gene054781:CDS |
| GAATAGCCTCACAGTTACAA+GGG | 0.627441 | 5.3:-34566214 | MS.gene054781:CDS |
| GATCTTGTCGGAGAATCTTG+AGG | 0.633809 | 5.3:+34566042 | None:intergenic |
| GTTGATAGTGCTAACAAACA+AGG | 0.636397 | 5.3:-34568124 | MS.gene054781:CDS |
| ATATATACCTGATATGCTTG+TGG | 0.647448 | 5.3:+34567163 | None:intergenic |
| AACTGACCAAGATGGAAACA+AGG | 0.648970 | 5.3:-34567897 | MS.gene054781:CDS |
| CTTCTGCCCTTGTAACTGTG+AGG | 0.651693 | 5.3:+34566208 | None:intergenic |
| TAATAGGCCAACTCTGTCGG+TGG | 0.652365 | 5.3:+34566263 | None:intergenic |
| CCATAAGCTCTATTGCTGTG+TGG | 0.654498 | 5.3:+34567674 | None:intergenic |
| GATGGTGGATGGTTCATGGA+TGG | 0.659799 | 5.3:-34568031 | MS.gene054781:intron |
| TAAACATACCCTTATAACAG+TGG | 0.663440 | 5.3:+34568234 | None:intergenic |
| CAAATGCAACATAGTGAACG+CGG | 0.679127 | 5.3:-34567599 | MS.gene054781:CDS |
| ATGCTAATATTGATGCCGAG+GGG | 0.728802 | 5.3:-34567186 | MS.gene054781:CDS |
| ATGCAACATAGTGAACGCGG+AGG | 0.752860 | 5.3:-34567596 | MS.gene054781:CDS |
| CTGCTATAACTGACTCACAG+AGG | 0.754139 | 5.3:-34567513 | MS.gene054781:CDS |
| TGTGATGCATGTGACCGACG+AGG | 0.784173 | 5.3:-34567545 | MS.gene054781:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTACTAAAATATTGTTT+AGG | + | chr5.3:34567942-34567961 | None:intergenic | 10.0% |
| !! | TATATTTGATTGTATATTGT+AGG | - | chr5.3:34567366-34567385 | MS.gene054781:CDS | 15.0% |
| !! | TCATAAATTAGTAAATTAAG+TGG | + | chr5.3:34567663-34567682 | None:intergenic | 15.0% |
| !!! | CACATGTTATTTAAAATAAA+GGG | + | chr5.3:34567802-34567821 | None:intergenic | 15.0% |
| !!! | TCACATGTTATTTAAAATAA+AGG | + | chr5.3:34567803-34567822 | None:intergenic | 15.0% |
| !!! | TTGTATCTATTTTTGTTAAA+TGG | + | chr5.3:34566059-34566078 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTTAATTTGTTAA+GGG | - | chr5.3:34568088-34568107 | MS.gene054781:CDS | 15.0% |
| !!! | TTTGTTTTGTTAATTTGTTA+AGG | - | chr5.3:34568087-34568106 | MS.gene054781:CDS | 15.0% |
| !! | ACATTGTTTGATTCTATTTA+TGG | - | chr5.3:34566626-34566645 | MS.gene054781:intron | 20.0% |
| !! | ATCATATAACATAGAAAAGT+AGG | + | chr5.3:34567740-34567759 | None:intergenic | 20.0% |
| !! | TTGATCTTTACAAATAAACA+TGG | - | chr5.3:34567266-34567285 | MS.gene054781:CDS | 20.0% |
| !! | TTTATTTGTAAAGATCAAAG+TGG | + | chr5.3:34567264-34567283 | None:intergenic | 20.0% |
| !!! | AAGTTTGATTTTTTATGTTC+TGG | - | chr5.3:34566456-34566475 | MS.gene054781:intron | 20.0% |
| !!! | ACATGTTTATTTTATACAAG+TGG | - | chr5.3:34567995-34568014 | MS.gene054781:intron | 20.0% |
| !!! | GATTTATGTTGTTGAAATTT+TGG | - | chr5.3:34566218-34566237 | MS.gene054781:CDS | 20.0% |
| !!! | TGATAATCTTAACTTTTTGA+GGG | - | chr5.3:34566430-34566449 | MS.gene054781:intron | 20.0% |
| !!! | TTATTTAAAATAAAGGGTCA+TGG | + | chr5.3:34567796-34567815 | None:intergenic | 20.0% |
| !!! | TTGATAATCTTAACTTTTTG+AGG | - | chr5.3:34566429-34566448 | MS.gene054781:intron | 20.0% |
| ! | AAAGTAAACTAACAAGATTG+TGG | + | chr5.3:34567887-34567906 | None:intergenic | 25.0% |
| ! | AACACAATACTCAAAGTAAA+GGG | - | chr5.3:34568313-34568332 | MS.gene054781:intron | 25.0% |
| ! | AATGGAAAAAATTAGTACCT+TGG | + | chr5.3:34566041-34566060 | None:intergenic | 25.0% |
| ! | ATACAAGATAAACAATGAAG+AGG | + | chr5.3:34567700-34567719 | None:intergenic | 25.0% |
| ! | ATATATACTTAGCGAAAAAG+TGG | + | chr5.3:34566401-34566420 | None:intergenic | 25.0% |
| ! | ATTACATCAAGCATATAGAT+GGG | - | chr5.3:34567392-34567411 | MS.gene054781:CDS | 25.0% |
| ! | TAACACAATACTCAAAGTAA+AGG | - | chr5.3:34568312-34568331 | MS.gene054781:intron | 25.0% |
| ! | TACAAGATAAACAATGAAGA+GGG | + | chr5.3:34567699-34567718 | None:intergenic | 25.0% |
| ! | TATTACATCAAGCATATAGA+TGG | - | chr5.3:34567391-34567410 | MS.gene054781:CDS | 25.0% |
| ! | TATTTATGGATTTAGTCTCT+TGG | - | chr5.3:34566640-34566659 | MS.gene054781:intron | 25.0% |
| ! | TCAACAAGTAGAAAATAATG+AGG | + | chr5.3:34566095-34566114 | None:intergenic | 25.0% |
| ! | TCTAAATCTCATCATAACTA+AGG | - | chr5.3:34566326-34566345 | MS.gene054781:intron | 25.0% |
| ! | TGTTAGTACTTAGTTATGTT+TGG | - | chr5.3:34567506-34567525 | MS.gene054781:CDS | 25.0% |
| ! | TGTTGTTACTATTGAATGTA+GGG | - | chr5.3:34567122-34567141 | MS.gene054781:intron | 25.0% |
| !! | AAAGTCAATTTGTATTTTGC+AGG | - | chr5.3:34566248-34566267 | MS.gene054781:CDS | 25.0% |
| !! | ATCTTTTGTTAACTTTGGTT+TGG | - | chr5.3:34568405-34568424 | MS.gene054781:CDS | 25.0% |
| !! | ATTTTATACAAGTGGCAATT+AGG | - | chr5.3:34568003-34568022 | MS.gene054781:intron | 25.0% |
| !! | CATTTTGGATTACATTAGAA+AGG | - | chr5.3:34566533-34566552 | MS.gene054781:intron | 25.0% |
| !! | TCTAGATCTTTTGTTAACTT+TGG | - | chr5.3:34568400-34568419 | MS.gene054781:CDS | 25.0% |
| !! | TGTAGCTTTTGTTAAAATCA+CGG | + | chr5.3:34567567-34567586 | None:intergenic | 25.0% |
| !!! | ACTTGTTGATTTGTTTTTTC+AGG | - | chr5.3:34566106-34566125 | MS.gene054781:CDS | 25.0% |
| !!! | CTTGTTGATTTGTTTTTTCA+GGG | - | chr5.3:34566107-34566126 | MS.gene054781:CDS | 25.0% |
| !!! | GATAATCTTAACTTTTTGAG+GGG | - | chr5.3:34566431-34566450 | MS.gene054781:intron | 25.0% |
| AATCTTGCTAGTTGTGATAA+TGG | - | chr5.3:34567825-34567844 | MS.gene054781:intron | 30.0% | |
| ACAAGATCATCAATCTTTAG+TGG | - | chr5.3:34568367-34568386 | MS.gene054781:intron | 30.0% | |
| ACTAATTTATGATTTCCTGC+AGG | - | chr5.3:34567671-34567690 | MS.gene054781:CDS | 30.0% | |
| ATATATACCTGATATGCTTG+TGG | + | chr5.3:34567234-34567253 | None:intergenic | 30.0% | |
| ATCACAGCATACTCAAAAAA+AGG | + | chr5.3:34566201-34566220 | None:intergenic | 30.0% | |
| CAAACAATGTACATAGTTAG+TGG | + | chr5.3:34566616-34566635 | None:intergenic | 30.0% | |
| CTAAGACAATTGAATCCATT+AGG | - | chr5.3:34568278-34568297 | MS.gene054781:intron | 30.0% | |
| CTAATTTATGATTTCCTGCA+GGG | - | chr5.3:34567672-34567691 | MS.gene054781:CDS | 30.0% | |
| CTGTTGTTACTATTGAATGT+AGG | - | chr5.3:34567121-34567140 | MS.gene054781:intron | 30.0% | |
| GAAAAAATTAGTACCTTGGA+GGG | + | chr5.3:34566037-34566056 | None:intergenic | 30.0% | |
| GGTTTATAAGGTGATTTCAT+TGG | - | chr5.3:34567336-34567355 | MS.gene054781:CDS | 30.0% | |
| GTACTTAGTTATGTTTGGAT+TGG | - | chr5.3:34567511-34567530 | MS.gene054781:CDS | 30.0% | |
| TAAACATACCCTTATAACAG+TGG | + | chr5.3:34566163-34566182 | None:intergenic | 30.0% | |
| TAGTAAATTAAGTGGATGCT+TGG | + | chr5.3:34567655-34567674 | None:intergenic | 30.0% | |
| TCAAAATGCCACTGTTATAA+GGG | - | chr5.3:34566152-34566171 | MS.gene054781:CDS | 30.0% | |
| TGAACTTAACCACAATTTGT+TGG | - | chr5.3:34567906-34567925 | MS.gene054781:CDS | 30.0% | |
| TGATGAGATTTAGATCAGTA+AGG | + | chr5.3:34566320-34566339 | None:intergenic | 30.0% | |
| TGTACTTTGTTGGGTTTATA+AGG | - | chr5.3:34567324-34567343 | MS.gene054781:CDS | 30.0% | |
| TTACTATTGAATGTAGGGAT+AGG | - | chr5.3:34567127-34567146 | MS.gene054781:intron | 30.0% | |
| TTTAATGTAACTGACCAAGA+TGG | - | chr5.3:34566489-34566508 | MS.gene054781:intron | 30.0% | |
| TTTGACAGATATGCAATATG+TGG | - | chr5.3:34567179-34567198 | MS.gene054781:CDS | 30.0% | |
| ! | ATCAGATGATGTTTGATGAT+AGG | - | chr5.3:34567013-34567032 | MS.gene054781:intron | 30.0% |
| ! | CAGTAAATTTTGCAGAATCA+CGG | - | chr5.3:34567534-34567553 | MS.gene054781:CDS | 30.0% |
| ! | CTAAAGATTGATGATCTTGT+CGG | + | chr5.3:34568367-34568386 | None:intergenic | 30.0% |
| ! | TCAGATGATGTTTGATGATA+GGG | - | chr5.3:34567014-34567033 | MS.gene054781:intron | 30.0% |
| ! | TTTCTGCATCTGATTTTACA+GGG | + | chr5.3:34567420-34567439 | None:intergenic | 30.0% |
| AACTGCTATTCAACTAACCT+TGG | + | chr5.3:34567852-34567871 | None:intergenic | 35.0% | |
| AAGGCTTACATTTCTTCTGA+TGG | - | chr5.3:34566345-34566364 | MS.gene054781:intron | 35.0% | |
| AAGTGGCAATTAGGTATTCT+TGG | - | chr5.3:34568012-34568031 | MS.gene054781:intron | 35.0% | |
| ACAGACTTATGAGATTCCTT+TGG | - | chr5.3:34567291-34567310 | MS.gene054781:CDS | 35.0% | |
| AGAAAGGTGAGTGTTTCATT+TGG | - | chr5.3:34566549-34566568 | MS.gene054781:intron | 35.0% | |
| CAAATGTTGATGTTGTGAAC+TGG | - | chr5.3:34567082-34567101 | MS.gene054781:intron | 35.0% | |
| CAGTTCACAACATCAACATT+TGG | + | chr5.3:34567084-34567103 | None:intergenic | 35.0% | |
| CTATTCTCAGTCTCATTACA+TGG | - | chr5.3:34565977-34565996 | MS.gene054781:CDS | 35.0% | |
| CTCAAAATGCCACTGTTATA+AGG | - | chr5.3:34566151-34566170 | MS.gene054781:CDS | 35.0% | |
| GAATCCATTAGGCAAACAAT+TGG | - | chr5.3:34568289-34568308 | MS.gene054781:intron | 35.0% | |
| GGAAAAAATTAGTACCTTGG+AGG | + | chr5.3:34566038-34566057 | None:intergenic | 35.0% | |
| GTTAACACTTTCTATGTTCG+CGG | - | chr5.3:34568232-34568251 | MS.gene054781:intron | 35.0% | |
| GTTACCAATTGTTTGCCTAA+TGG | + | chr5.3:34568296-34568315 | None:intergenic | 35.0% | |
| TACGTGTTACGTTCGATAAT+AGG | + | chr5.3:34568150-34568169 | None:intergenic | 35.0% | |
| TATTGAGAGAAGAGTTTCTG+AGG | - | chr5.3:34567471-34567490 | MS.gene054781:CDS | 35.0% | |
| TTCAGGGTTGTGATTGATAA+TGG | - | chr5.3:34566123-34566142 | MS.gene054781:CDS | 35.0% | |
| TTTGTCAAGCCAACAAATTG+TGG | + | chr5.3:34567918-34567937 | None:intergenic | 35.0% | |
| ! | CTTTCTGCATCTGATTTTAC+AGG | + | chr5.3:34567421-34567440 | None:intergenic | 35.0% |
| ! | GGTAACAGATGAAGTCATTT+TGG | - | chr5.3:34566518-34566537 | MS.gene054781:intron | 35.0% |
| ! | TATAACAGTGGCATTTTGAG+AGG | + | chr5.3:34566151-34566170 | None:intergenic | 35.0% |
| ! | TTCTGCATCTGATTTTACAG+GGG | + | chr5.3:34567419-34567438 | None:intergenic | 35.0% |
| !! | GTTGATAGTGCTAACAAACA+AGG | - | chr5.3:34566270-34566289 | MS.gene054781:CDS | 35.0% |
| !! | TGTTGGTGTTAAACAAACAC+TGG | - | chr5.3:34566696-34566715 | MS.gene054781:intron | 35.0% |
| AACTGACCAAGATGGAAACA+AGG | - | chr5.3:34566497-34566516 | MS.gene054781:intron | 40.0% | |
| AGAATAGCCTCACAGTTACA+AGG | - | chr5.3:34568179-34568198 | MS.gene054781:intron | 40.0% | |
| ATGAGATTCCTTTGGTTGCT+TGG | - | chr5.3:34567299-34567318 | MS.gene054781:CDS | 40.0% | |
| ATGCTAATATTGATGCCGAG+GGG | - | chr5.3:34567208-34567227 | MS.gene054781:CDS | 40.0% | |
| ATTCGACGCATACTGATAGA+AGG | - | chr5.3:34566986-34567005 | MS.gene054781:CDS | 40.0% | |
| CAAATGCAACATAGTGAACG+CGG | - | chr5.3:34566795-34566814 | MS.gene054781:intron | 40.0% | |
| CACACAGCAATAGAGCTTAT+GGG | - | chr5.3:34566721-34566740 | MS.gene054781:intron | 40.0% | |
| CATGCTAATATTGATGCCGA+GGG | - | chr5.3:34567207-34567226 | MS.gene054781:CDS | 40.0% | |
| CCAACAGATCTCATAGTAGT+TGG | + | chr5.3:34566682-34566701 | None:intergenic | 40.0% | |
| CCAACTACTATGAGATCTGT+TGG | - | chr5.3:34566679-34566698 | MS.gene054781:intron | 40.0% | |
| CGTTCACTATGTTGCATTTG+AGG | + | chr5.3:34566795-34566814 | None:intergenic | 40.0% | |
| GAATAGCCTCACAGTTACAA+GGG | - | chr5.3:34568180-34568199 | MS.gene054781:intron | 40.0% | |
| GAATCTTGAGGTACAGATTC+AGG | + | chr5.3:34568343-34568362 | None:intergenic | 40.0% | |
| GCTTACATTTCTTCTGATGG+TGG | - | chr5.3:34566348-34566367 | MS.gene054781:intron | 40.0% | |
| TAGAGCTTATGGGAAGTGAT+AGG | - | chr5.3:34566731-34566750 | MS.gene054781:intron | 40.0% | |
| TCATGCTAATATTGATGCCG+AGG | - | chr5.3:34567206-34567225 | MS.gene054781:CDS | 40.0% | |
| TCTCATAGTAGTTGGAAAGC+AGG | + | chr5.3:34566674-34566693 | None:intergenic | 40.0% | |
| TGCTTGGTCTGTACTTTGTT+GGG | - | chr5.3:34567315-34567334 | MS.gene054781:CDS | 40.0% | |
| TTAGAAGAATGAACCCTCCA+AGG | - | chr5.3:34566021-34566040 | MS.gene054781:CDS | 40.0% | |
| TTGCTTGGTCTGTACTTTGT+TGG | - | chr5.3:34567314-34567333 | MS.gene054781:CDS | 40.0% | |
| ! | ACAGTGTCGAAAACAAGCTT+TGG | + | chr5.3:34567153-34567172 | None:intergenic | 40.0% |
| ! | CTGTTACCTTGTTTCCATCT+TGG | + | chr5.3:34566506-34566525 | None:intergenic | 40.0% |
| ! | TGTTGTGAACTGGTCTGATA+AGG | - | chr5.3:34567092-34567111 | MS.gene054781:intron | 40.0% |
| !! | ACATTTCTTCTGATGGTGGA+TGG | - | chr5.3:34566352-34566371 | MS.gene054781:intron | 40.0% |
| !! | CTAGTTGTGATAATGGTCCA+AGG | - | chr5.3:34567832-34567851 | MS.gene054781:intron | 40.0% |
| ACAGAGGCTTTCGCTAATCA+AGG | - | chr5.3:34566897-34566916 | MS.gene054781:intron | 45.0% | |
| AGGGCAGAAGTAACAACGAA+AGG | - | chr5.3:34568199-34568218 | MS.gene054781:intron | 45.0% | |
| AGTACAGACCAAGCAACCAA+AGG | + | chr5.3:34567310-34567329 | None:intergenic | 45.0% | |
| CCACACAGCAATAGAGCTTA+TGG | - | chr5.3:34566720-34566739 | MS.gene054781:intron | 45.0% | |
| CCATAAGCTCTATTGCTGTG+TGG | + | chr5.3:34566723-34566742 | None:intergenic | 45.0% | |
| CGATAATAGGCCAACTCTGT+CGG | + | chr5.3:34568137-34568156 | None:intergenic | 45.0% | |
| CTTCTGTGTAATGTGCTTGG+TGG | - | chr5.3:34566922-34566941 | MS.gene054781:intron | 45.0% | |
| GAGCTTCTGTGTAATGTGCT+TGG | - | chr5.3:34566919-34566938 | MS.gene054781:intron | 45.0% | |
| GATCTTGTCGGAGAATCTTG+AGG | + | chr5.3:34568355-34568374 | None:intergenic | 45.0% | |
| GCAGAAGTAACAACGAAAGG+AGG | - | chr5.3:34568202-34568221 | MS.gene054781:intron | 45.0% | |
| GTAGTTGGAAAGCAGGATTC+AGG | + | chr5.3:34566667-34566686 | None:intergenic | 45.0% | |
| ! | CTCACTTCTGAAAGCAATCC+TGG | + | chr5.3:34566757-34566776 | None:intergenic | 45.0% |
| ! | CTGCTATAACTGACTCACAG+AGG | - | chr5.3:34566881-34566900 | MS.gene054781:intron | 45.0% |
| !! | AGAGAAGAGTTTCTGAGGTG+AGG | - | chr5.3:34567476-34567495 | MS.gene054781:CDS | 45.0% |
| !! | GAGAAGAGTTTCTGAGGTGA+GGG | - | chr5.3:34567477-34567496 | MS.gene054781:CDS | 45.0% |
| !! | TTCTGATGGTGGATGGTTCA+TGG | - | chr5.3:34566359-34566378 | MS.gene054781:intron | 45.0% |
| ACATAGTGAACGCGGAGGTT+TGG | - | chr5.3:34566803-34566822 | MS.gene054781:intron | 50.0% | |
| AGCAGAACCTGTTTCCTCGT+CGG | + | chr5.3:34566866-34566885 | None:intergenic | 50.0% | |
| ATGCAACATAGTGAACGCGG+AGG | - | chr5.3:34566798-34566817 | MS.gene054781:intron | 50.0% | |
| CTTATGGGAAGTGATAGGCC+AGG | - | chr5.3:34566736-34566755 | MS.gene054781:intron | 50.0% | |
| CTTCTGCCCTTGTAACTGTG+AGG | + | chr5.3:34568189-34568208 | None:intergenic | 50.0% | |
| TAATAGGCCAACTCTGTCGG+TGG | + | chr5.3:34568134-34568153 | None:intergenic | 50.0% | |
| TTCTATGTTCGCGGAGCTTC+TGG | - | chr5.3:34568241-34568260 | MS.gene054781:intron | 50.0% | |
| ! | CTGTGTAATGTGCTTGGTGG+TGG | - | chr5.3:34566925-34566944 | MS.gene054781:CDS | 50.0% |
| !! | ATGTGCTTGGTGGTGGAAAC+AGG | - | chr5.3:34566932-34566951 | MS.gene054781:CDS | 50.0% |
| !! | GATGGTGGATGGTTCATGGA+TGG | - | chr5.3:34566363-34566382 | MS.gene054781:intron | 50.0% |
| !! | GGTGGTGGAAACAGGAAAAG+AGG | - | chr5.3:34566940-34566959 | MS.gene054781:CDS | 50.0% |
| ACAATGAAGAGGGTCCCTGC+AGG | + | chr5.3:34567689-34567708 | None:intergenic | 55.0% | |
| CATGTGACCGACGAGGAAAC+AGG | - | chr5.3:34566856-34566875 | MS.gene054781:intron | 55.0% | |
| CTGATATGCTTGTGGCCCCT+CGG | + | chr5.3:34567226-34567245 | None:intergenic | 55.0% | |
| TGTGATGCATGTGACCGACG+AGG | - | chr5.3:34566849-34566868 | MS.gene054781:intron | 55.0% | |
| CGAGGGGCCACAAGCATATC+AGG | - | chr5.3:34567224-34567243 | MS.gene054781:CDS | 60.0% | |
| CTCTGCACCACCGACAGAGT+TGG | - | chr5.3:34568124-34568143 | MS.gene054781:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 34565972 | 34568444 | 34565972 | ID=MS.gene054781 |
| chr5.3 | mRNA | 34565972 | 34568444 | 34565972 | ID=MS.gene054781.t1;Parent=MS.gene054781 |
| chr5.3 | exon | 34568374 | 34568444 | 34568374 | ID=MS.gene054781.t1.exon1;Parent=MS.gene054781.t1 |
| chr5.3 | CDS | 34568374 | 34568444 | 34568374 | ID=cds.MS.gene054781.t1;Parent=MS.gene054781.t1 |
| chr5.3 | exon | 34568243 | 34568288 | 34568243 | ID=MS.gene054781.t1.exon2;Parent=MS.gene054781.t1 |
| chr5.3 | CDS | 34568243 | 34568288 | 34568243 | ID=cds.MS.gene054781.t1;Parent=MS.gene054781.t1 |
| chr5.3 | exon | 34568032 | 34568146 | 34568032 | ID=MS.gene054781.t1.exon3;Parent=MS.gene054781.t1 |
| chr5.3 | CDS | 34568032 | 34568146 | 34568032 | ID=cds.MS.gene054781.t1;Parent=MS.gene054781.t1 |
| chr5.3 | exon | 34567862 | 34567929 | 34567862 | ID=MS.gene054781.t1.exon4;Parent=MS.gene054781.t1 |
| chr5.3 | CDS | 34567862 | 34567929 | 34567862 | ID=cds.MS.gene054781.t1;Parent=MS.gene054781.t1 |
| chr5.3 | exon | 34567171 | 34567761 | 34567171 | ID=MS.gene054781.t1.exon5;Parent=MS.gene054781.t1 |
| chr5.3 | CDS | 34567171 | 34567761 | 34567171 | ID=cds.MS.gene054781.t1;Parent=MS.gene054781.t1 |
| chr5.3 | exon | 34566924 | 34567028 | 34566924 | ID=MS.gene054781.t1.exon6;Parent=MS.gene054781.t1 |
| chr5.3 | CDS | 34566924 | 34567028 | 34566924 | ID=cds.MS.gene054781.t1;Parent=MS.gene054781.t1 |
| chr5.3 | exon | 34565972 | 34566307 | 34565972 | ID=MS.gene054781.t1.exon7;Parent=MS.gene054781.t1 |
| chr5.3 | CDS | 34565972 | 34566307 | 34565972 | ID=cds.MS.gene054781.t1;Parent=MS.gene054781.t1 |
| Gene Sequence |
| Protein sequence |
